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authorNeil Fortner <nfortne2@hdfgroup.org>2019-01-07 21:20:11 (GMT)
committerNeil Fortner <nfortne2@hdfgroup.org>2019-01-07 21:40:44 (GMT)
commitb043126e5e502d198b222139677bc08c9915a12b (patch)
treed7594f6cbdc7dc2264f4df71a042b5c744e40295 /test/tbogus.h5
parente52e68c82f16a74551d7ce21976d87b40c6ddcd7 (diff)
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Delay checking if decoded message's "shareable" flag is appropriate for
the message type until we've verified we understand the message type. Reduce size of H5O_msg_class_g to *not* include space for H5O_BOGUS_INVALID. Make bogus messages shareable. Add new bogus message test with shareable messages to cover the formerly problematic code. Re-run gen_bogus.c to add this test case and also to fix the bogus_invalid messages that were no longer H5O_BOGUS_INVLAID due to a new message class being added in a previous commit. Added comment to remind developers to run gen_bogus.c when adding a new message class.
Diffstat (limited to 'test/tbogus.h5')
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1 files changed, 0 insertions, 0 deletions
diff --git a/test/tbogus.h5 b/test/tbogus.h5
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tools/test/misc/testfiles/h5clear_missing_file.err delete mode 100644 tools/test/misc/testfiles/h5clear_no_mdc_image.ddl create mode 100644 tools/test/misc/testfiles/h5clear_no_mdc_image.err delete mode 100644 tools/test/misc/testfiles/h5clear_open_fail.ddl create mode 100644 tools/test/misc/testfiles/h5clear_open_fail.err create mode 100644 tools/test/perform/chunk_cache.c create mode 100644 tools/testfiles/t128bit_float.h5 diff --git a/CMakeFilters.cmake b/CMakeFilters.cmake index 71dabb1..5a89564 100644 --- a/CMakeFilters.cmake +++ b/CMakeFilters.cmake @@ -27,7 +27,15 @@ if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MAT set (TGZPATH ${HDF5_SOURCE_DIR}) endif () set (ZLIB_URL ${TGZPATH}/${ZLIB_TGZ_NAME}) + if (NOT EXISTS "${ZLIB_URL}") + set (HDF5_ENABLE_Z_LIB_SUPPORT OFF CACHE BOOL "" FORCE) + message (STATUS "Filter ZLIB file ${ZLIB_URL} not found") + endif () set (SZIP_URL ${TGZPATH}/${SZIP_TGZ_NAME}) + if (NOT EXISTS "${SZIP_URL}") + set (HDF5_ENABLE_SZIP_SUPPORT OFF CACHE BOOL "" FORCE) + message (STATUS "Filter SZIP file ${SZIP_URL} not found") + endif () else () set (ZLIB_USE_EXTERNAL 0) set (SZIP_USE_EXTERNAL 0) diff --git a/CMakeInstallation.cmake b/CMakeInstallation.cmake index 2339049..dc229d2 100644 --- a/CMakeInstallation.cmake +++ b/CMakeInstallation.cmake @@ -33,7 +33,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED) EXPORT ${HDF5_EXPORTED_TARGETS} DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5 FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake - NAMESPACE ${HDF5_PACKAGE}:: + NAMESPACE ${HDF_PACKAGE_NAMESPACE} COMPONENT configinstall ) endif () @@ -45,7 +45,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED) export ( TARGETS ${HDF5_LIBRARIES_TO_EXPORT} ${HDF5_LIB_DEPENDENCIES} ${HDF5_UTILS_TO_EXPORT} FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake - NAMESPACE ${HDF5_PACKAGE}:: + NAMESPACE ${HDF_PACKAGE_NAMESPACE} ) endif () endif () @@ -104,6 +104,12 @@ endif () # Configure the hdf5-config-version .cmake file for the install directory #----------------------------------------------------------------------------- if (NOT HDF5_EXTERNALLY_CONFIGURED) + # 3.11 or greater + #write_basic_package_version_file ( + # ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake + # VERSION ${HDF5_PACKAGE_VERSION} + # COMPATIBILITY SameMinorVersion + #) configure_file ( ${HDF_RESOURCES_DIR}/hdf5-config-version.cmake.in ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake @ONLY @@ -125,7 +131,7 @@ else () endif () configure_file ( ${HDF_RESOURCES_DIR}/libhdf5.settings.cmake.in - ${HDF5_BINARY_DIR}/libhdf5.settings @ONLY + ${HDF5_BINARY_DIR}/libhdf5.settings ESCAPE_QUOTES @ONLY ) install ( FILES ${HDF5_BINARY_DIR}/libhdf5.settings @@ -134,7 +140,7 @@ install ( ) #----------------------------------------------------------------------------- -# Configure the HDF518_Examples.cmake file and the examples +# Configure the HDF5_Examples.cmake file and the examples #----------------------------------------------------------------------------- option (HDF5_PACK_EXAMPLES "Package the HDF5 Library Examples Compressed File" OFF) if (HDF5_PACK_EXAMPLES) @@ -186,7 +192,7 @@ HDF_README_PROPERTIES(HDF5_BUILD_FORTRAN) #----------------------------------------------------------------------------- # Configure the COPYING.txt file for the windows binary package #----------------------------------------------------------------------------- -if (WIN32) +if (WIN32 OR MINGW) configure_file (${HDF5_SOURCE_DIR}/COPYING ${HDF5_BINARY_DIR}/COPYING.txt @ONLY) endif () @@ -206,7 +212,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED) ${HDF5_SOURCE_DIR}/release_docs/COPYING ${HDF5_SOURCE_DIR}/release_docs/RELEASE.txt ) - if (WIN32) + if (WIN32 OR MINGW) set (release_files ${release_files} ${HDF5_SOURCE_DIR}/release_docs/USING_HDF5_VS.txt @@ -220,7 +226,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED) ${HDF5_SOURCE_DIR}/release_docs/HISTORY-1_8.txt ${HDF5_SOURCE_DIR}/release_docs/INSTALL ) - if (WIN32) + if (WIN32 OR MINGW) set (release_files ${release_files} ${HDF5_SOURCE_DIR}/release_docs/INSTALL_Windows.txt @@ -288,7 +294,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED AND NOT HDF5_NO_PACKAGES) set (CPACK_PACKAGE_ICON "${HDF_RESOURCES_EXT_DIR}/hdf.bmp") set (CPACK_GENERATOR "TGZ") - if (WIN32) + if (WIN32 OR MINGW) set (CPACK_GENERATOR "ZIP") if (NSIS_EXECUTABLE) @@ -453,7 +459,7 @@ The HDF5 data model, file format, API, library, and tools are open and distribut if (HDF5_PACKAGE_EXTLIBS) if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ") if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL) - if (WIN32) + if (WIN32 OR MINGW) set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;ALL;/") else () set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;libraries;/") @@ -462,7 +468,7 @@ The HDF5 data model, file format, API, library, and tools are open and distribut endif () endif () if (SZIP_FOUND AND SZIP_USE_EXTERNAL) - if (WIN32) + if (WIN32 OR MINGW) set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${SZIP_INCLUDE_DIR_GEN};SZIP;ALL;/") else () set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${SZIP_INCLUDE_DIR_GEN};SZIP;libraries;/") diff --git a/CMakeLists.txt b/CMakeLists.txt index 53cddf7..7ae0833 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,6 +1,10 @@ cmake_minimum_required (VERSION 3.10) project (HDF5 C) +if(POLICY CMP0074) + cmake_policy(SET CMP0074 NEW) +endif() + #----------------------------------------------------------------------------- # Instructions for use : Normal Build # @@ -10,7 +14,7 @@ project (HDF5 C) # set CMAKE_INSTALL_PREFIX to the required install path. # Make install can be used to install all components for system-wide use. # -if ("${CMAKE_CURRENT_SOURCE_DIR}" STREQUAL "${CMAKE_CURRENT_BINARY_DIR}") +if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_CURRENT_BINARY_DIR) MESSAGE(FATAL_ERROR "\nERROR! ${PROJECT_NAME} DOES NOT SUPPORT IN SOURCE BUILDS!\n" "CMAKE_CURRENT_SOURCE_DIR=${CMAKE_CURRENT_SOURCE_DIR}" " == CMAKE_CURRENT_BINARY_DIR=${CMAKE_CURRENT_BINARY_DIR}\n" @@ -28,6 +32,12 @@ if ("${CMAKE_CURRENT_SOURCE_DIR}" STREQUAL "${CMAKE_CURRENT_BINARY_DIR}") ) endif () +# CMake version 3.14 added option --ignore-eol to compare files +# cmake -E compare_files --ignore-eol file1 file2 +#if(CMAKE_VERSION VERSION_LESS "3.14.0" AND WIN32) +# MESSAGE(FATAL_ERROR "Windows builds requires a minimum of CMake 3.14") +#endif() + #----------------------------------------------------------------------------- # Instructions for use : Sub-Project Build # @@ -314,7 +324,7 @@ set (HDF5_PACKAGE_NAME "HDF5") set (HDF5_PACKAGE_VERSION "${H5_VERS_MAJOR}.${H5_VERS_MINOR}.${H5_VERS_RELEASE}") set (HDF5_PACKAGE_VERSION_MAJOR "${H5_VERS_MAJOR}.${H5_VERS_MINOR}") set (HDF5_PACKAGE_VERSION_MINOR "${H5_VERS_RELEASE}") -if (NOT "${H5_VERS_SUBRELEASE}" STREQUAL "") +if (H5_VERS_SUBRELEASE) set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}-${H5_VERS_SUBRELEASE}") else () set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}") @@ -416,18 +426,23 @@ set (CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON) # Mac OS X Options #----------------------------------------------------------------------------- if (HDF5_BUILD_FRAMEWORKS AND NOT BUILD_SHARED_LIBS) - set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries") + set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries" FORCE) endif () #----------------------------------------------------------------------------- # Option to Build Shared and Static libs, default is both #----------------------------------------------------------------------------- +option (ONLY_SHARED_LIBS "Only Build Shared Libraries" OFF) +set (H5_ENABLE_STATIC_LIB YES) +if (ONLY_SHARED_LIBS) + set (H5_ENABLE_STATIC_LIB NO) + set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries") +endif () option (BUILD_SHARED_LIBS "Build Shared Libraries" ON) set (H5_ENABLE_SHARED_LIB NO) if (BUILD_SHARED_LIBS) set (H5_ENABLE_SHARED_LIB YES) endif () -set (H5_ENABLE_STATIC_LIB YES) set (CMAKE_POSITION_INDEPENDENT_CODE ON) #----------------------------------------------------------------------------- @@ -482,6 +497,15 @@ if (HDF5_MEMORY_ALLOC_SANITY_CHECK) endif () #----------------------------------------------------------------------------- +# Option to enable/disable using pread/pwrite for VFDs +#----------------------------------------------------------------------------- +option (HDF5_ENABLE_PREADWRITE "Use pread/pwrite in sec2/log/core VFDs in place of read/write (when available)" ON) +mark_as_advanced (HDF5_ENABLE_PREADWRITE) +if (HDF5_ENABLE_PREADWRITE AND H5_HAVE_PREAD AND H5_HAVE_PWRITE) + set (H5_HAVE_PREADWRITE 1) +endif () + +#----------------------------------------------------------------------------- # Option to use deprecated public API symbols #----------------------------------------------------------------------------- option (HDF5_ENABLE_DEPRECATED_SYMBOLS "Enable deprecated public API symbols" ON) @@ -498,7 +522,7 @@ endif () # and we need to call the executable from inside the CMake configuration #----------------------------------------------------------------------------- set (EXE_EXT "") -if (WIN32) +if (WIN32 OR MINGW) set (EXE_EXT ".exe") add_definitions (-D_BIND_TO_CURRENT_VCLIBS_VERSION=1) add_definitions (-D_CRT_SECURE_NO_WARNINGS) @@ -554,6 +578,27 @@ include (${HDF_RESOURCES_DIR}/HDFCompilerFlags.cmake) set (CMAKE_MODULE_PATH ${HDF_RESOURCES_DIR} ${HDF_RESOURCES_EXT_DIR} ${CMAKE_MODULE_PATH}) #----------------------------------------------------------------------------- +# Option to Enable HDFS +#----------------------------------------------------------------------------- +option (HDF5_ENABLE_HDFS "Enable HDFS" OFF) +if (HDF5_ENABLE_HDFS) + find_package(JNI REQUIRED) + if (JNI_FOUND) + set (H5_HAVE_LIBJVM 1) + endif () + find_package(HDFS REQUIRED) + if (HDFS_FOUND) + set (H5_HAVE_LIBHDFS 1) + set (H5_HAVE_HDFS_H 1) + if (NOT MSVC) + list (APPEND LINK_LIBS -pthread) + endif () + else () + message (FATAL_ERROR "Set to use libhdfs library, but could not find or use libhdfs. Please verify that the path to HADOOP_HOME is valid, and/or reconfigure without HDF5_ENABLE_HDFS") + endif () +endif () + +#----------------------------------------------------------------------------- # Option to Enable MPI Parallel #----------------------------------------------------------------------------- option (HDF5_ENABLE_PARALLEL "Enable parallel build (requires MPI)" OFF) @@ -601,45 +646,53 @@ if (H5_HAVE_PARALLEL) endif () endif () -set (DEFAULT_API_VERSION "v110") +#option (DEFAULT_API_VERSION "Enable v1.14 API (v16, v18, v110, v112, v114)" "v114") +set (DEFAULT_API_VERSION "v114" CACHE STRING "Enable v1.14 API (v16, v18, v110, v112, v114)") +set_property (CACHE DEFAULT_API_VERSION PROPERTY STRINGS v16 v18 v110 v112 v114) #----------------------------------------------------------------------------- # Option to use 1.6.x API #----------------------------------------------------------------------------- -option (HDF5_USE_16_API_DEFAULT "Use the HDF5 1.6.x API by default" OFF) set (H5_USE_16_API_DEFAULT 0) -if (HDF5_USE_16_API_DEFAULT) +if (DEFAULT_API_VERSION MATCHES "v16") set (H5_USE_16_API_DEFAULT 1) - set (DEFAULT_API_VERSION "v16") endif () #----------------------------------------------------------------------------- # Option to use 1.8.x API #----------------------------------------------------------------------------- -option (HDF5_USE_18_API_DEFAULT "Use the HDF5 1.8.x API by default" OFF) set (H5_USE_18_API_DEFAULT 0) -if (HDF5_USE_18_API_DEFAULT) +if (DEFAULT_API_VERSION MATCHES "v18") set (H5_USE_18_API_DEFAULT 1) - set (DEFAULT_API_VERSION "v18") endif () #----------------------------------------------------------------------------- # Option to use 1.10.x API #----------------------------------------------------------------------------- -option (HDF5_USE_110_API_DEFAULT "Use the HDF5 1.10.x API by default" OFF) set (H5_USE_110_API_DEFAULT 0) -if (HDF5_USE_110_API_DEFAULT) +if (DEFAULT_API_VERSION MATCHES "v110") set (H5_USE_110_API_DEFAULT 1) - set (DEFAULT_API_VERSION "v110") endif () #----------------------------------------------------------------------------- # Option to use 1.12.x API #----------------------------------------------------------------------------- -option (HDF5_USE_112_API_DEFAULT "Use the HDF5 1.12.x API by default" ON) +if (NOT DEFAULT_API_VERSION) + set (DEFAULT_API_VERSION "v112") +endif () set (H5_USE_112_API_DEFAULT 0) -if (HDF5_USE_112_API_DEFAULT) +if (DEFAULT_API_VERSION MATCHES "v112") set (H5_USE_112_API_DEFAULT 1) - set (DEFAULT_API_VERSION "v112") +endif () + +#----------------------------------------------------------------------------- +# Option to use 1.14.x API +#----------------------------------------------------------------------------- +if (NOT DEFAULT_API_VERSION) + set (DEFAULT_API_VERSION "v114") +endif () +set (H5_USE_114_API_DEFAULT 0) +if (DEFAULT_API_VERSION MATCHES "v114") + set (H5_USE_114_API_DEFAULT 1) endif () #----------------------------------------------------------------------------- @@ -668,14 +721,17 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED) endif () endif () endif () + #----------------------------------------------------------------------------- # Option to use threadsafe #----------------------------------------------------------------------------- option (HDF5_ENABLE_THREADSAFE "Enable thread-safety" OFF) if (HDF5_ENABLE_THREADSAFE) # check for unsupported options - message (STATUS " **** thread-safety option not supported with static library **** ") - message (STATUS " **** thread-safety option will not be used building static library **** ") + if (WIN32 OR MINGW) + message (STATUS " **** thread-safety option not supported with static library **** ") + message (STATUS " **** thread-safety option will not be used building static library **** ") + endif () if (HDF5_ENABLE_PARALLEL) if (NOT ALLOW_UNSUPPORTED) message (FATAL_ERROR " **** parallel and thread-safety options are not supported **** ") @@ -713,26 +769,38 @@ if (HDF5_ENABLE_THREADSAFE) endif () endif () set(THREADS_PREFER_PTHREAD_FLAG ON) - find_package(Threads) - if (NOT Threads_FOUND) - message (STATUS " **** thread-safe package not found - threads still might work **** ") + find_package(Threads REQUIRED) + if (Threads_FOUND) + set (H5_HAVE_THREADSAFE 1) endif () endif () #----------------------------------------------------------------------------- +# Option to build the map API +#----------------------------------------------------------------------------- +option (HDF5_ENABLE_MAP_API "Build the map API" OFF) +if (HDF5_ENABLE_MAP_API) + set (H5_HAVE_MAP_API 1) +endif () + +#----------------------------------------------------------------------------- # Add the HDF5 Library Target to the build #----------------------------------------------------------------------------- add_subdirectory (src) if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ") if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL) - add_dependencies (${HDF5_LIB_TARGET} ZLIB) + if (NOT ONLY_SHARED_LIBS) + add_dependencies (${HDF5_LIB_TARGET} ZLIB) + endif () if (BUILD_SHARED_LIBS) add_dependencies (${HDF5_LIBSH_TARGET} ZLIB) endif () endif () if (SZIP_FOUND AND SZIP_USE_EXTERNAL) - add_dependencies (${HDF5_LIB_TARGET} SZIP) + if (NOT ONLY_SHARED_LIBS) + add_dependencies (${HDF5_LIB_TARGET} SZIP) + endif () if (BUILD_SHARED_LIBS) add_dependencies (${HDF5_LIBSH_TARGET} SZIP) endif () @@ -745,10 +813,15 @@ endif () option (BUILD_TESTING "Build HDF5 Unit Testing" ON) if (BUILD_TESTING) set (DART_TESTING_TIMEOUT 1200 - CACHE INTEGER + CACHE STRING "Timeout in seconds for each test (default 1200=20minutes)" ) + # Generate a list of timeouts based on DART_TESTING_TIMEOUT + math (EXPR CTEST_SHORT_TIMEOUT "${DART_TESTING_TIMEOUT} / 2") + math (EXPR CTEST_LONG_TIMEOUT "${DART_TESTING_TIMEOUT} * 2") + math (EXPR CTEST_VERY_LONG_TIMEOUT "${DART_TESTING_TIMEOUT} * 3") + option (HDF5_TEST_VFD "Execute tests with different VFDs" OFF) mark_as_advanced (HDF5_TEST_VFD) if (HDF5_TEST_VFD) @@ -756,6 +829,13 @@ if (BUILD_TESTING) mark_as_advanced (HDF5_TEST_FHEAP_VFD) endif () + option (HDF5_TEST_PASSTHROUGH_VOL "Execute tests with different passthrough VOL connectors" OFF) + mark_as_advanced (HDF5_TEST_PASSTHROUGH_VOL) + if (HDF5_TEST_PASSTHROUGH_VOL) + option (HDF5_TEST_FHEAP_PASSTHROUGH_VOL "Execute fheap test with different passthrough VOL connectors" ON) + mark_as_advanced (HDF5_TEST_FHEAP_PASSTHROUGH VOL) + endif () + option (HDF_TEST_EXPRESS "Control testing framework (0-3)" "0") mark_as_advanced (HDF_TEST_EXPRESS) @@ -819,25 +899,20 @@ set (H5_FC_FUNC_ "H5_FC_FUNC_(name,NAME) name ## _") if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/fortran") option (HDF5_BUILD_FORTRAN "Build FORTRAN support" OFF) if (HDF5_BUILD_FORTRAN) - - option (HDF5_ENABLE_F2003 "Enable FORTRAN 2003 Standard" ON) - include (${HDF_RESOURCES_EXT_DIR}/HDFUseFortran.cmake) message (STATUS "Fortran compiler ID is ${CMAKE_Fortran_COMPILER_ID}") # Building with PGI requires CMake 3.3 or greater because previous versions # of CMake add the wrong compiler flag for the PGI Fortran compiler. - if ("${CMAKE_Fortran_COMPILER_ID}" MATCHES "PGI" AND "${CMAKE_VERSION}" VERSION_LESS "3.3") + if (CMAKE_Fortran_COMPILER_ID MATCHES "PGI" AND CMAKE_VERSION VERSION_LESS "3.3") message (FATAL_ERROR " **** PGI FORTRAN REQUIRES CMAKE VERSION 3.3 OR GREATER **** ") endif () include (${HDF_RESOURCES_DIR}/HDF5UseFortran.cmake) set (LINK_Fortran_LIBS ${LINK_LIBS}) - if (HDF5_ENABLE_F2003) - if (NOT FORTRAN_HAVE_ISO_C_BINDING) - set (HDF5_ENABLE_F2003 OFF) - endif () + if (NOT H5_FORTRAN_HAVE_ISO_C_BINDING) + message (FATAL_ERROR " **** Fortran compiler lacks required Fortran 2003 features; unsupported Fortran 2003 compiler, disable HDF5_BUILD_FORTRAN **** ") endif () # Parallel IO usage requires MPI to be Linked and Included @@ -913,4 +988,10 @@ endif () #----------------------------------------------------------------------------- configure_file (${HDF_RESOURCES_DIR}/H5pubconf.h.in ${HDF5_BINARY_DIR}/H5pubconf.h @ONLY) +#----------------------------------------------------------------------------- +# Options for use by cross compiling and toolchains +#----------------------------------------------------------------------------- +option (HDF5_USE_PREGEN "Use pre-generated Files" OFF) +option (HDF5_BATCH_H5DETECT "Use a batch command for running h5detect" OFF) + include (CMakeInstallation.cmake) diff --git a/COPYING b/COPYING index 560e8c4..659bf1c 100644 --- a/COPYING +++ b/COPYING @@ -3,10 +3,10 @@ HDF5 (Hierarchical Data Format 5) Software Library and Utilities ----------------------------------------------------------------------------- HDF5 (Hierarchical Data Format 5) Software Library and Utilities -Copyright (c) 2006-2018, The HDF Group. +Copyright 2006 by The HDF Group. NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities -Copyright (c) 1998-2006, The Board of Trustees of the University of Illinois. +Copyright 1998-2006 by The Board of Trustees of the University of Illinois. All rights reserved. @@ -80,20 +80,20 @@ and/or accompanying materials: for the operation of UC LLNL. DISCLAIMER: - This work was prepared as an account of work sponsored by an agency of - the United States Government. Neither the United States Government nor - the University of California nor any of their employees, makes any - warranty, express or implied, or assumes any liability or responsibility - for the accuracy, completeness, or usefulness of any information, - apparatus, product, or process disclosed, or represents that its use - would not infringe privately- owned rights. Reference herein to any - specific commercial products, process, or service by trade name, - trademark, manufacturer, or otherwise, does not necessarily constitute - or imply its endorsement, recommendation, or favoring by the United - States Government or the University of California. The views and - opinions of authors expressed herein do not necessarily state or reflect - those of the United States Government or the University of California, - and shall not be used for advertising or product endorsement purposes. + THIS WORK WAS PREPARED AS AN ACCOUNT OF WORK SPONSORED BY AN AGENCY OF + THE UNITED STATES GOVERNMENT. NEITHER THE UNITED STATES GOVERNMENT NOR + THE UNIVERSITY OF CALIFORNIA NOR ANY OF THEIR EMPLOYEES, MAKES ANY + WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY OR RESPONSIBILITY + FOR THE ACCURACY, COMPLETENESS, OR USEFULNESS OF ANY INFORMATION, + APPARATUS, PRODUCT, OR PROCESS DISCLOSED, OR REPRESENTS THAT ITS USE + WOULD NOT INFRINGE PRIVATELY- OWNED RIGHTS. REFERENCE HEREIN TO ANY + SPECIFIC COMMERCIAL PRODUCTS, PROCESS, OR SERVICE BY TRADE NAME, + TRADEMARK, MANUFACTURER, OR OTHERWISE, DOES NOT NECESSARILY CONSTITUTE + OR IMPLY ITS ENDORSEMENT, RECOMMENDATION, OR FAVORING BY THE UNITED + STATES GOVERNMENT OR THE UNIVERSITY OF CALIFORNIA. THE VIEWS AND + OPINIONS OF AUTHORS EXPRESSED HEREIN DO NOT NECESSARILY STATE OR REFLECT + THOSE OF THE UNITED STATES GOVERNMENT OR THE UNIVERSITY OF CALIFORNIA, + AND SHALL NOT BE USED FOR ADVERTISING OR PRODUCT ENDORSEMENT PURPOSES. ----------------------------------------------------------------------------- diff --git a/CTestConfig.cmake b/CTestConfig.cmake index 5b35688..4868d07 100644 --- a/CTestConfig.cmake +++ b/CTestConfig.cmake @@ -45,10 +45,10 @@ set (VALGRIND_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds= set (CTEST_MEMORYCHECK_COMMAND "/usr/bin/valgrind") set (CTEST_MEMORYCHECK_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=yes --num-callers=50 --show-reachable=yes --track-origins=yes --malloc-fill=0xff --free-fill=0xfe") -set (CTEST_TEST_TIMEOUT 600 CACHE STRING +set (CTEST_TEST_TIMEOUT 1200 CACHE STRING "Maximum time allowed before CTest will kill the test.") -set (DART_TESTING_TIMEOUT 600 CACHE STRING +set (DART_TESTING_TIMEOUT 1200 CACHE STRING "Maximum time allowed before CTest will kill the test." FORCE) -SET(CTEST_SUBMIT_RETRY_DELAY 20 CACHE STRING +set (CTEST_SUBMIT_RETRY_DELAY 20 CACHE STRING "How long to wait between timed-out CTest submissions.") diff --git a/MANIFEST b/MANIFEST index c9a6706..59d4118 100644 --- a/MANIFEST +++ b/MANIFEST @@ -71,12 +71,15 @@ ./bin/errors _DO_NOT_DISTRIBUTE_ ./bin/genparser ./bin/gcov_script _DO_NOT_DISTRIBUTE_ +./bin/h5cc.in +./bin/h5redeploy.in ./bin/h5vers ./bin/iostats ./bin/locate_sw ./bin/make_err ./bin/make_overflow ./bin/make_vers +./bin/Makefile.am ./bin/makehelp ./bin/mkdirs ./bin/newer @@ -91,7 +94,19 @@ ./bin/switch_maint_mode _DO_NOT_DISTRIBUTE_ ./bin/timekeeper _DO_NOT_DISTRIBUTE_ ./bin/trace +./bin/warnhist _DO_NOT_DISTRIBUTE_ ./bin/yodconfigure +./bin/batch/ctestP.lsf.in.cmake +./bin/batch/ctestP.sl.in.cmake +./bin/batch/ctestS.lsf.in.cmake +./bin/batch/ctestS.sl.in.cmake +./bin/batch/knl_ctestP.sl.in.cmake +./bin/batch/knl_ctestS.sl.in.cmake +./bin/batch/knl_H5detect.sl.in.cmake +./bin/batch/ctest.qsub.in.cmake +./bin/batch/ray_ctestP.lsf.in.cmake +./bin/batch/ray_ctestS.lsf.in.cmake +./bin/batch/raybsub ./bin/pkgscrpts/h5rmflags _DO_NOT_DISTRIBUTE_ ./bin/pkgscrpts/makeHDF5BinaryTarfiles.pl _DO_NOT_DISTRIBUTE_ ./bin/pkgscrpts/makeInternalREADME.pl _DO_NOT_DISTRIBUTE_ @@ -152,8 +167,10 @@ ./examples/h5_select.c ./examples/h5_attribute.c ./examples/h5_mount.c -./examples/h5_reference.c -./examples/h5_ref2reg.c +./examples/h5_ref_compat.c +./examples/h5_ref_extern.c +./examples/h5_reference_deprec.c +./examples/h5_ref2reg_deprec.c ./examples/h5_shared_mesg.c ./examples/ph5example.c ./examples/h5_vds.c @@ -231,6 +248,7 @@ ./fortran/src/H5Sff.F90 ./fortran/src/H5Tf.c ./fortran/src/H5Tff.F90 +./fortran/src/H5VLff.F90 ./fortran/src/H5Zf.c ./fortran/src/H5Zff.F90 ./fortran/src/H5config_f.inc.cmake @@ -250,8 +268,8 @@ ./fortran/src/h5fc.in ./fortran/src/hdf5_fortrandll.def.in - ./fortran/test/Makefile.am +./fortran/test/vol_connector.F90 ./fortran/test/fflush1.F90 ./fortran/test/fflush2.F90 ./fortran/test/fortranlib_test.F90 @@ -447,6 +465,8 @@ ./release_docs/INSTALL_parallel ./release_docs/INSTALL_Warnings.txt ./release_docs/INSTALL_Windows.txt +./release_docs/README_HDF5_CMake +./release_docs/README_HPC ./release_docs/RELEASE.txt ./release_docs/USING_HDF5_CMake.txt ./release_docs/USING_HDF5_VS.txt @@ -463,6 +483,7 @@ ./src/H5err.txt ./src/H5detect.c ./src/H5make_libsettings.c +./src/H5mpi.c ./src/H5overflow.txt ./src/H5private.h ./src/H5public.h @@ -482,7 +503,6 @@ ./src/H5Apublic.h ./src/H5AC.c ./src/H5ACdbg.c -./src/H5AClog.c ./src/H5ACmodule.h ./src/H5ACmpio.c ./src/H5ACpkg.h @@ -495,7 +515,6 @@ ./src/H5Bmodule.h ./src/H5Bpkg.h ./src/H5Bprivate.h -./src/H5Bpublic.h ./src/H5B2.c ./src/H5B2cache.c ./src/H5B2dbg.c @@ -506,7 +525,6 @@ ./src/H5B2module.h ./src/H5B2pkg.h ./src/H5B2private.h -./src/H5B2public.h ./src/H5B2stat.c ./src/H5B2test.c ./src/H5C.c @@ -514,6 +532,9 @@ ./src/H5Cepoch.c ./src/H5Cimage.c ./src/H5Clog.c +./src/H5Clog.h +./src/H5Clog_json.c +./src/H5Clog_trace.c ./src/H5Cmodule.h ./src/H5Cmpio.c ./src/H5Cpkg.h @@ -576,6 +597,7 @@ ./src/H5EAsblock.c ./src/H5EAstat.c ./src/H5EAtest.c +./src/H5ESpublic.h ./src/H5F.c ./src/H5Faccum.c ./src/H5Fcwfs.c @@ -617,6 +639,8 @@ ./src/H5FDdrvr_module.h ./src/H5FDfamily.c ./src/H5FDfamily.h +./src/H5FDhdfs.c +./src/H5FDhdfs.h ./src/H5FDint.c ./src/H5FDlog.c ./src/H5FDlog.h @@ -627,9 +651,13 @@ ./src/H5FDmpio.h ./src/H5FDmulti.c ./src/H5FDmulti.h +./src/H5FDros3.c +./src/H5FDros3.h ./src/H5FDpkg.h ./src/H5FDprivate.h ./src/H5FDpublic.h +./src/H5FDs3comms.h +./src/H5FDs3comms.c ./src/H5FDsec2.c ./src/H5FDsec2.h ./src/H5FDspace.c @@ -652,7 +680,6 @@ ./src/H5FSmodule.h ./src/H5FSpkg.h ./src/H5FSprivate.h -./src/H5FSpublic.h ./src/H5FSsection.c ./src/H5FSstat.c ./src/H5FStest.c @@ -692,7 +719,6 @@ ./src/H5HFmodule.h ./src/H5HFpkg.h ./src/H5HFprivate.h -./src/H5HFpublic.h ./src/H5HFsection.c ./src/H5HFspace.c ./src/H5HFstat.c @@ -704,7 +730,6 @@ ./src/H5HGmodule.h ./src/H5HGpkg.h ./src/H5HGprivate.h -./src/H5HGpublic.h ./src/H5HGquery.c ./src/H5HL.c ./src/H5HLcache.c @@ -715,7 +740,6 @@ ./src/H5HLpkg.h ./src/H5HLprfx.c ./src/H5HLprivate.h -./src/H5HLpublic.h ./src/H5HP.c ./src/H5HPprivate.h ./src/H5I.c @@ -730,6 +754,11 @@ ./src/H5Lpkg.h ./src/H5Lprivate.h ./src/H5Lpublic.h +./src/H5M.c +./src/H5Mmodule.h +./src/H5Mpkg.h +./src/H5Mprivate.h +./src/H5Mpublic.h ./src/H5MF.c ./src/H5MFaggr.c ./src/H5MFdbg.c @@ -762,6 +791,7 @@ ./src/H5Ochunk.c ./src/H5Ocont.c ./src/H5Ocopy.c +./src/H5Ocopy_ref.c ./src/H5Odbg.c ./src/H5Odeprec.c ./src/H5Odrvinfo.c @@ -806,6 +836,8 @@ ./src/H5Pint.c ./src/H5Plapl.c ./src/H5Plcpl.c +./src/H5Pmapl.c +./src/H5Pmcpl.c ./src/H5Pmodule.h ./src/H5Pocpl.c ./src/H5Pocpypl.c @@ -841,6 +873,7 @@ ./src/H5S.c ./src/H5Sall.c ./src/H5Sdbg.c +./src/H5Sdeprec.c ./src/H5Shyper.c ./src/H5Smodule.h ./src/H5Smpio.c @@ -888,11 +921,34 @@ ./src/H5Tprecis.c ./src/H5Tprivate.h ./src/H5Tpublic.h +./src/H5Tref.c ./src/H5Tstrpad.c ./src/H5Tvisit.c ./src/H5Tvlen.c ./src/H5TS.c ./src/H5TSprivate.h +./src/H5VL.c +./src/H5VLcallback.c +./src/H5VLconnector.h +./src/H5VLconnector_passthru.h +./src/H5VLint.c +./src/H5VLmodule.h +./src/H5VLnative.c +./src/H5VLnative.h +./src/H5VLnative_attr.c +./src/H5VLnative_blob.c +./src/H5VLnative_dataset.c +./src/H5VLnative_datatype.c +./src/H5VLnative_file.c +./src/H5VLnative_group.c +./src/H5VLnative_link.c +./src/H5VLnative_object.c +./src/H5VLnative_private.h +./src/H5VLpassthru.c +./src/H5VLpassthru.h +./src/H5VLpkg.h +./src/H5VLprivate.h +./src/H5VLpublic.h ./src/H5VM.c ./src/H5VMprivate.h ./src/H5WB.c @@ -946,12 +1002,14 @@ ./test/cache_image.c ./test/cache_logging.c ./test/cache_tagging.c +./test/chunk_info.c ./test/cmpd_dset.c ./test/cork.c ./test/corrupt_stab_msg.h5 ./test/cross_read.c ./test/dangle.c ./test/deflate.h5 +./test/del_many_dense_attrs.c ./test/direct_chunk.c ./test/dsets.c ./test/dt_arith.c @@ -965,6 +1023,10 @@ ./test/evict_on_close.c ./test/extend.c ./test/external.c +./test/external_common.c +./test/external_common.h +./test/external_env.c +./test/external_fname.h ./test/error_test.c ./test/err_compat.c ./test/filter_error.h5 @@ -982,6 +1044,7 @@ ./test/file_image.c ./test/file_image_core_test.h5 ./test/fill_old.h5 +./test/fill18.h5 ./test/fillval.c ./test/filter_fail.c ./test/filter_plugin.c @@ -1005,6 +1068,7 @@ ./test/gen_deflate.c ./test/gen_file_image.c ./test/gen_filespace.c +./test/gen_filters.c ./test/gen_mergemsg.c ./test/gen_new_array.c ./test/gen_new_fill.c @@ -1032,6 +1096,7 @@ ./test/h5fc_ext_none.h5 ./test/h5test.c ./test/h5test.h +./test/hdfs.c ./test/hyperslab.c ./test/istore.c ./test/le_data.h5 @@ -1039,6 +1104,7 @@ ./test/le_extlink2.h5 ./test/lheap.c ./test/links.c +./test/memleak_H5O_dtype_decode_helper_H5Odtype.h5 ./test/mergemsg.h5 ./test/mf.c ./test/mount.c @@ -1048,13 +1114,18 @@ ./test/noencoder.h5 ./test/none.h5 ./test/ntypes.c +./test/null_vol_connector.c +./test/null_vol_connector.h ./test/ohdr.c ./test/objcopy.c +./test/objcopy_ref.c ./test/page_buffer.c ./test/paged_nopersist.h5 ./test/paged_persist.h5 ./test/reserved.c +./test/ros3.c ./test/pool.c +./test/s3comms.c ./test/set_extent.c # ====distribute this for now. See HDFFV-8236==== ./test/space_overflow.c @@ -1083,21 +1154,26 @@ ./test/tcheck_version.c ./test/tconfig.c ./test/tcoords.c +./test/testabort_fail.sh.in ./test/testcheck_version.sh.in +./test/testexternal_env.sh.in ./test/testerror.sh.in ./test/testlinks_env.sh.in -./test/test_filenotclosed.sh.in ./test/test_filter_plugin.sh.in +./test/test_filters_le.h5 +./test/test_filters_be.h5 ./test/testflushrefresh.sh.in ./test/testframe.c ./test/testhdf5.c ./test/testhdf5.h ./test/testlibinfo.sh.in ./test/test_usecases.sh.in +./test/test_vol_plugin.sh.in ./test/testmeta.c ./test/testswmr.sh.in ./test/testvdsswmr.sh.in ./test/testvfdswmr.sh.in +./test/testvds_env.sh.in ./test/tfile.c ./test/tgenprop.c ./test/th5o.c @@ -1113,6 +1189,7 @@ ./test/tmtimeo.h5 ./test/ttime.c ./test/trefer.c +./test/trefer_deprec.c ./test/trefstr.c ./test/tselect.c ./test/tsizeslheap.h5 @@ -1136,12 +1213,8 @@ ./test/use_common.c ./test/use_disable_mdc_flushes.c ./test/use.h -./test/vfd.c -./test/test_filters_le.h5 -./test/test_filters_be.h5 -./test/gen_filters.c -./test/chunk_info.c ./test/vds.c +./test/vds_env.c ./test/vds_swmr.h ./test/vds_swmr_gen.c ./test/vds_swmr_reader.c @@ -1152,6 +1225,10 @@ ./test/vfd_swmr_generator.c ./test/vfd_swmr_reader.c ./test/vfd_swmr_writer.c +./test/vfd.c +./test/vol.c +./test/vol_plugin.c + ./test/testfiles/err_compat_1 ./test/testfiles/err_compat_2 ./test/testfiles/error_test_1 @@ -1281,6 +1358,7 @@ ./testpar/t_span_tree.c ./testpar/t_init_term.c ./testpar/testpar.h +./testpar/testpflush.sh.in ./testpar/testphdf5.c ./testpar/testphdf5.h @@ -1387,14 +1465,17 @@ ./tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err ./tools/test/h5format_convert/testfiles/h5fc_v_non_chunked.ddl ./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl +./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl.err +./tools/test/h5format_convert/testfiles/h5fc_d_file-d.ddl ./tools/test/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl ./tools/test/h5format_convert/testfiles/h5fc_dname.ddl -./tools/test/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl +./tools/test/h5format_convert/testfiles/h5fc_dname.err +./tools/test/h5format_convert/testfiles/h5fc_nonexistfile.ddl.err +./tools/test/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl.err ./tools/test/h5format_convert/testfiles/h5fc_help.ddl ./tools/test/h5format_convert/testfiles/h5fc_v_all.ddl ./tools/test/h5format_convert/testfiles/h5fc_nooption.ddl ./tools/test/h5format_convert/testfiles/h5fc_v_n_1d.ddl -./tools/test/h5format_convert/testfiles/h5fc_nonexistfile.ddl ./tools/test/h5format_convert/testfiles/h5fc_non_v3.h5 ./tools/test/h5format_convert/testfiles/h5fc_edge_v3.h5 ./tools/test/h5format_convert/testfiles/h5fc_err_level.h5 @@ -1445,6 +1526,7 @@ ./tools/test/h5repack/dynlib_rpk.c ./tools/test/h5repack/dynlib_vrpk.c ./tools/test/h5repack/h5repack.sh.in +./tools/test/h5repack/h5repackgentest.c ./tools/test/h5repack/h5repack_plugin.sh.in ./tools/test/h5repack/h5repacktst.c ./tools/test/h5repack/testh5repack_detect_szip.c @@ -1464,6 +1546,11 @@ ./tools/test/h5ls/vds_prefix/tvds-4.ls ./tools/test/h5ls/vds_prefix/tvds-5.ls +# h5ls test error files +./tools/test/h5ls/errfiles/nosuchfile.err +./tools/test/h5ls/errfiles/textlinksrc-nodangle-1.err +./tools/test/h5ls/errfiles/tgroup-1.err + # h5copy sources ./tools/src/h5copy/Makefile.am ./tools/src/h5copy/h5copy.c @@ -1499,12 +1586,13 @@ ./tools/lib/io_timer.c ./tools/lib/io_timer.h +./tools/libtest/Makefile.am +./tools/libtest/h5tools_test_utils.c + ./tools/src/misc/Makefile.am -./tools/src/misc/h5cc.in ./tools/src/misc/h5clear.c ./tools/src/misc/h5debug.c ./tools/src/misc/h5mkgrp.c -./tools/src/misc/h5redeploy.in ./tools/src/misc/h5repart.c ./tools/test/misc/Makefile.am ./tools/test/misc/h5repart_gentest.c @@ -1519,10 +1607,11 @@ ./tools/test/misc/testfiles/h5clear_less_after_size.ddl ./tools/test/misc/testfiles/h5clear_less_before_size.ddl ./tools/test/misc/testfiles/h5clear_missing_file.ddl +./tools/test/misc/testfiles/h5clear_missing_file.err ./tools/test/misc/testfiles/h5clear_noclose_after_size.ddl ./tools/test/misc/testfiles/h5clear_noclose_before_size.ddl -./tools/test/misc/testfiles/h5clear_no_mdc_image.ddl -./tools/test/misc/testfiles/h5clear_open_fail.ddl +./tools/test/misc/testfiles/h5clear_no_mdc_image.err +./tools/test/misc/testfiles/h5clear_open_fail.err ./tools/test/misc/testfiles/h5clear_status_noclose_after_size.ddl ./tools/test/misc/testfiles/h5clear_usage.ddl ./tools/test/misc/testfiles/h5clear_user_equal_after_size.ddl @@ -1576,10 +1665,6 @@ ./tools/test/h5stat/testh5stat.sh.in ./tools/test/h5stat/testfiles/h5stat_dims1.ddl ./tools/test/h5stat/testfiles/h5stat_dims2.ddl -./tools/test/h5stat/testfiles/h5stat_err1_dims.ddl -./tools/test/h5stat/testfiles/h5stat_err1_links.ddl -./tools/test/h5stat/testfiles/h5stat_err1_numattrs.ddl -./tools/test/h5stat/testfiles/h5stat_err2_numattrs.ddl ./tools/test/h5stat/testfiles/h5stat_err_old_fill.h5 ./tools/test/h5stat/testfiles/h5stat_err_old_fill.ddl ./tools/test/h5stat/testfiles/h5stat_err_old_layout.h5 @@ -1617,6 +1702,15 @@ ./tools/test/h5stat/testfiles/h5stat_threshold.h5 ./tools/test/h5stat/testfiles/h5stat_tsohm.ddl ./tools/test/h5stat/testfiles/h5stat_tsohm.h5 +./tools/test/h5stat/testfiles/h5stat_err_refcount.err +./tools/test/h5stat/testfiles/h5stat_err_old_layout.err +./tools/test/h5stat/testfiles/h5stat_err_old_fill.err +./tools/test/h5stat/testfiles/h5stat_err1_dims.err +./tools/test/h5stat/testfiles/h5stat_err1_links.err +./tools/test/h5stat/testfiles/h5stat_err1_numattrs.err +./tools/test/h5stat/testfiles/h5stat_err2_numattrs.err +./tools/test/h5stat/testfiles/h5stat_notexist.err +./tools/test/h5stat/testfiles/h5stat_nofile.err # h5dump test files ./tools/testfiles/charsets.h5 @@ -1648,6 +1742,7 @@ ./tools/testfiles/h5dump-help.txt ./tools/testfiles/non_existing.ddl ./tools/testfiles/packedbits.ddl +./tools/testfiles/t128bit_float.h5 ./tools/testfiles/taindices.h5 ./tools/testfiles/tall-1.ddl ./tools/testfiles/tall-2.ddl @@ -2278,7 +2373,6 @@ ./tools/test/h5diff/testfiles/h5diff_600.txt ./tools/test/h5diff/testfiles/h5diff_601.txt ./tools/test/h5diff/testfiles/h5diff_601_ERR.err -./tools/test/h5diff/testfiles/h5diff_601_ERR.txt ./tools/test/h5diff/testfiles/h5diff_603.txt ./tools/test/h5diff/testfiles/h5diff_604.txt ./tools/test/h5diff/testfiles/h5diff_605.txt @@ -2385,21 +2479,12 @@ ./tools/test/h5diff/testfiles/h5diff_452.txt ./tools/test/h5diff/testfiles/h5diff_453.txt ./tools/test/h5diff/testfiles/h5diff_454.txt -./tools/test/h5diff/testfiles/h5diff_454_ERR.err -./tools/test/h5diff/testfiles/h5diff_454_ERR.txt +./tools/test/h5diff/testfiles/dangling_link.err ./tools/test/h5diff/testfiles/h5diff_455.txt -./tools/test/h5diff/testfiles/h5diff_455_ERR.err -./tools/test/h5diff/testfiles/h5diff_455_ERR.txt ./tools/test/h5diff/testfiles/h5diff_456.txt ./tools/test/h5diff/testfiles/h5diff_457.txt -./tools/test/h5diff/testfiles/h5diff_457_ERR.err -./tools/test/h5diff/testfiles/h5diff_457_ERR.txt ./tools/test/h5diff/testfiles/h5diff_458.txt -./tools/test/h5diff/testfiles/h5diff_458_ERR.err -./tools/test/h5diff/testfiles/h5diff_458_ERR.txt ./tools/test/h5diff/testfiles/h5diff_459.txt -./tools/test/h5diff/testfiles/h5diff_459_ERR.err -./tools/test/h5diff/testfiles/h5diff_459_ERR.txt ./tools/test/h5diff/testfiles/h5diff_465.txt ./tools/test/h5diff/testfiles/h5diff_466.txt ./tools/test/h5diff/testfiles/h5diff_467.txt @@ -2489,6 +2574,7 @@ ./tools/test/h5diff/testfiles/tudfilter.h5 ./tools/test/h5diff/testfiles/tudfilter2.h5 ./tools/test/h5diff/testfiles/h5diff_ud.txt +./tools/test/h5diff/testfiles/h5diff_udfail.err ./tools/test/h5diff/testfiles/h5diff_udfail.txt ./tools/test/h5diff/testfiles/diff_strings1.h5 ./tools/test/h5diff/testfiles/diff_strings2.h5 @@ -2508,12 +2594,25 @@ ./tools/test/h5repack/testfiles/h5repack_early.h5 ./tools/test/h5repack/testfiles/h5repack_ext.bin ./tools/test/h5repack/testfiles/h5repack_ext.h5 +./tools/test/h5repack/testfiles/h5repack_f32le.h5 +./tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 ./tools/test/h5repack/testfiles/h5repack_fill.h5 ./tools/test/h5repack/testfiles/h5repack_filters.h5 ./tools/test/h5repack/testfiles/h5repack_fletcher.h5 ./tools/test/h5repack/testfiles/h5repack_fsm_aggr_nopersist.h5 ./tools/test/h5repack/testfiles/h5repack_fsm_aggr_persist.h5 ./tools/test/h5repack/testfiles/h5repack_hlink.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 ./tools/test/h5repack/testfiles/h5repack.info ./tools/test/h5repack/testfiles/h5repack_layout.h5 ./tools/test/h5repack/testfiles/h5repack_layouto.h5 @@ -2532,6 +2631,12 @@ ./tools/test/h5repack/testfiles/h5repack_shuffle.h5 ./tools/test/h5repack/testfiles/h5repack_soffset.h5 ./tools/test/h5repack/testfiles/h5repack_szip.h5 +./tools/test/h5repack/testfiles/h5repack_uint8be.h5 +./tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat +./tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat +./tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat +./tools/test/h5repack/testfiles/h5repack_uint8be_ex.h5 ./tools/test/h5repack/testfiles/ublock.bin ./tools/test/h5repack/testfiles/crtorder.tordergr.h5.ddl ./tools/test/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl @@ -2589,6 +2694,7 @@ ./tools/test/h5copy/testfiles/h5copy_extlinks_src.h5 ./tools/test/h5copy/testfiles/h5copy_extlinks_trg.h5 ./tools/test/h5copy/testfiles/h5copy_extlinks_src.out.ls +./tools/test/h5copy/testfiles/h5copy_misc1.err ./tools/test/h5copy/testfiles/h5copy_misc1.out ./tools/test/h5copy/testfiles/h5copytst_new.h5 ./tools/test/h5copy/testfiles/h5copytst_new.out.ls @@ -2618,6 +2724,7 @@ ./tools/test/perform/build_h5perf_alone.sh ./tools/test/perform/build_h5perf_serial_alone.sh ./tools/test/perform/chunk.c +./tools/test/perform/chunk_cache.c ./tools/test/perform/direct_write_perf.c ./tools/test/perform/gen_report.pl ./tools/test/perform/iopipe.c @@ -2756,16 +2863,17 @@ # expected test output from testing h5watch # -./hl/tools/testfiles/w-err-cmpd1.ddl -./hl/tools/testfiles/w-err-cmpd2.ddl -./hl/tools/testfiles/w-err-cmpd3.ddl -./hl/tools/testfiles/w-err-cmpd4.ddl -./hl/tools/testfiles/w-err-cmpd5.ddl -./hl/tools/testfiles/w-err-dset1.ddl -./hl/tools/testfiles/w-err-dset2.ddl -./hl/tools/testfiles/w-err-dset-nomax.ddl -./hl/tools/testfiles/w-err-dset-none.ddl -./hl/tools/testfiles/w-err-file.ddl +./hl/tools/testfiles/w-err-std.ddl +./hl/tools/testfiles/w-err-cmpd1.err +./hl/tools/testfiles/w-err-cmpd2.err +./hl/tools/testfiles/w-err-cmpd3.err +./hl/tools/testfiles/w-err-cmpd4.err +./hl/tools/testfiles/w-err-cmpd5.err +./hl/tools/testfiles/w-err-dset1.err +./hl/tools/testfiles/w-err-dset2.err +./hl/tools/testfiles/w-err-dset-nomax.err +./hl/tools/testfiles/w-err-dset-none.err +./hl/tools/testfiles/w-err-file.err ./hl/tools/testfiles/w-err-poll0.ddl ./hl/tools/testfiles/w-err-poll.ddl ./hl/tools/testfiles/w-err-width.ddl @@ -2867,6 +2975,32 @@ ./java/src/jni/h5oImp.h ./java/src/jni/h5pImp.c ./java/src/jni/h5pImp.h +./java/src/jni/h5pACPLImp.c +./java/src/jni/h5pACPLImp.h +./java/src/jni/h5pDAPLImp.c +./java/src/jni/h5pDAPLImp.h +./java/src/jni/h5pDCPLImp.c +./java/src/jni/h5pDCPLImp.h +./java/src/jni/h5pDXPLImp.c +./java/src/jni/h5pDXPLImp.h +./java/src/jni/h5pFAPLImp.c +./java/src/jni/h5pFAPLImp.h +./java/src/jni/h5pFCPLImp.c +./java/src/jni/h5pFCPLImp.h +./java/src/jni/h5pGAPLImp.c +./java/src/jni/h5pGAPLImp.h +./java/src/jni/h5pGCPLImp.c +./java/src/jni/h5pGCPLImp.h +./java/src/jni/h5pLAPLImp.c +./java/src/jni/h5pLAPLImp.h +./java/src/jni/h5pLCPLImp.c +./java/src/jni/h5pLCPLImp.h +./java/src/jni/h5pOCPLImp.c +./java/src/jni/h5pOCPLImp.h +./java/src/jni/h5pOCpyPLImp.c +./java/src/jni/h5pOCpyPLImp.h +./java/src/jni/h5pStrCPLImp.c +./java/src/jni/h5pStrCPLImp.h ./java/src/jni/h5plImp.c ./java/src/jni/h5plImp.h ./java/src/jni/h5rImp.c @@ -2875,6 +3009,8 @@ ./java/src/jni/h5sImp.h ./java/src/jni/h5tImp.c ./java/src/jni/h5tImp.h +./java/src/jni/h5vlImp.c +./java/src/jni/h5vlImp.h ./java/src/jni/h5zImp.c ./java/src/jni/h5zImp.h @@ -2941,6 +3077,8 @@ ./java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java ./java/src/hdf/hdf5lib/structs/H5E_error2_t.java ./java/src/hdf/hdf5lib/structs/H5F_info2_t.java +./java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java +./java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java ./java/src/hdf/hdf5lib/structs/H5G_info_t.java ./java/src/hdf/hdf5lib/structs/H5L_info_t.java ./java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java @@ -3104,6 +3242,8 @@ ./java/test/testfiles/JUnit-TestH5P.txt ./java/test/testfiles/JUnit-TestH5PData.txt ./java/test/testfiles/JUnit-TestH5Pfapl.txt +./java/test/testfiles/JUnit-TestH5Pfaplhdfs.txt +./java/test/testfiles/JUnit-TestH5Pfapls3.txt ./java/test/testfiles/JUnit-TestH5Plist.txt ./java/test/testfiles/JUnit-TestH5Pvirtual.txt ./java/test/testfiles/JUnit-TestH5PL.txt @@ -3113,6 +3253,7 @@ ./java/test/testfiles/JUnit-TestH5Tparams.txt ./java/test/testfiles/JUnit-TestH5Tbasic.txt ./java/test/testfiles/JUnit-TestH5T.txt +./java/test/testfiles/JUnit-TestH5VL.txt ./java/test/testfiles/JUnit-TestH5Z.txt ./java/test/h5ex_g_iterate.orig ./java/test/TestH5.java @@ -3141,6 +3282,8 @@ ./java/test/TestH5P.java ./java/test/TestH5PData.java ./java/test/TestH5Pfapl.java +./java/test/TestH5Pfaplhdfs.java +./java/test/TestH5Pfapls3.java ./java/test/TestH5Plist.java ./java/test/TestH5Pvirtual.java ./java/test/TestH5PL.java @@ -3150,6 +3293,7 @@ ./java/test/TestH5Tparams.java ./java/test/TestH5Tbasic.java ./java/test/TestH5T.java +./java/test/TestH5VL.java ./java/test/TestH5Z.java ./java/test/TestAll.java @@ -3161,14 +3305,21 @@ ./java/lib/ext/slf4j-simple-1.7.25.jar # CMake-specific Files +./config/toolchain/build32.cmake +./config/toolchain/clang.cmake +./config/toolchain/crayle.cmake +./config/toolchain/GCC.cmake +./config/toolchain/intel.cmake +./config/toolchain/mingw64.cmake +./config/toolchain/PGI.cmake + ./config/cmake/cacheinit.cmake ./config/cmake/CMakeFindJavaCommon.cmake ./config/cmake/ConversionTests.c ./config/cmake/ConfigureChecks.cmake ./config/cmake/CPack.Info.plist.in ./config/cmake/CTestCustom.cmake -./config/cmake/FindHDFJAVA.cmake.in -./config/cmake/FindJNI.cmake +./config/cmake/FindHDFS.cmake ./config/cmake/H5cxx_config.h.in ./config/cmake/H5pubconf.h.in ./config/cmake/hdf5-config.cmake.in @@ -3190,6 +3341,8 @@ ./config/cmake/UseJavaSymlinks.cmake ./config/cmake/userblockTest.cmake ./config/cmake/vfdTest.cmake +./config/cmake/volTest.cmake +./config/cmake/wait_H5Tinit.cmake ./config/cmake_ext_mod/ConfigureChecks.cmake ./config/cmake_ext_mod/CTestCustom.cmake @@ -3215,7 +3368,6 @@ # CMake-specific Examples Files ./config/cmake/HDF5_Examples.cmake.in -./config/cmake/HDF518_Examples.cmake.in ./release_docs/USING_CMake_Examples.txt ./CMakeLists.txt @@ -3229,6 +3381,7 @@ ./c++/src/CMakeLists.txt ./c++/test/CMakeLists.txt ./c++/test/CMakeTests.cmake +./c++/test/CMakeVFDTests.cmake ./examples/CMakeLists.txt ./examples/CMakeTests.cmake ./examples/run-all-ex.sh @@ -3266,14 +3419,18 @@ ./hl/tools/h5watch/CMakeTests.cmake ./src/CMakeLists.txt ./test/CMakeLists.txt +./test/CMakePassthroughVOLTests.cmake ./test/CMakeTests.cmake ./test/CMakeVFDTests.cmake ./test/flushrefreshTest.cmake ./test/ShellTests.cmake ./testpar/CMakeLists.txt ./testpar/CMakeTests.cmake +./testpar/CMakeVFDTests.cmake ./tools/CMakeLists.txt ./tools/lib/CMakeLists.txt +./tools/libtest/CMakeLists.txt +./tools/libtest/CMakeTests.cmake ./tools/src/CMakeLists.txt ./tools/test/CMakeLists.txt ./tools/src/h5copy/CMakeLists.txt @@ -3288,6 +3445,7 @@ ./tools/test/h5dump/CMakeTestsPBITS.cmake ./tools/test/h5dump/CMakeTestsXML.cmake ./tools/test/h5dump/CMakeTestsVDS.cmake +./tools/test/h5dump/CMakeVFDTests.cmake ./tools/src/h5format_convert/CMakeLists.txt ./tools/test/h5format_convert/CMakeLists.txt ./tools/test/h5format_convert/CMakeTests.cmake @@ -3304,6 +3462,7 @@ ./tools/src/h5repack/CMakeLists.txt ./tools/test/h5repack/CMakeLists.txt ./tools/test/h5repack/CMakeTests.cmake +./tools/test/h5repack/CMakeVFDTests.cmake ./tools/src/h5stat/CMakeLists.txt ./tools/test/h5stat/CMakeLists.txt ./tools/test/h5stat/CMakeTests.cmake @@ -3323,6 +3482,12 @@ ./config/cmake/scripts/HDF5config.cmake ./config/cmake/scripts/HDF5options.cmake +# CMake-specific HPC Scripts +./config/cmake/scripts/HPC/sbatch-HDF5options.cmake +./config/cmake/scripts/HPC/bsub-HDF5options.cmake +./config/cmake/scripts/HPC/qsub-HDF5options.cmake +./config/cmake/scripts/HPC/raybsub-HDF5options.cmake + # Files generated by autogen ./aclocal.m4 ./bin/compile @@ -3336,6 +3501,7 @@ ./c++/examples/Makefile.in ./c++/Makefile.in ./configure +./bin/Makefile.in ./c++/src/Makefile.in ./c++/test/Makefile.in ./examples/Makefile.in @@ -3386,6 +3552,7 @@ ./testpar/Makefile.in ./tools/Makefile.in ./tools/lib/Makefile.in +./tools/libtest/Makefile.in ./tools/src/Makefile.in ./tools/src/h5copy/Makefile.in ./tools/src/h5diff/Makefile.in diff --git a/Makefile.am b/Makefile.am index e3e5e3d..d96ffe3 100644 --- a/Makefile.am +++ b/Makefile.am @@ -49,11 +49,6 @@ include $(top_srcdir)/config/commence.am # Conditionals. These conditionals are defined