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authorJerome Soumagne <jsoumagne@hdfgroup.org>2020-08-06 19:22:29 (GMT)
committerJerome Soumagne <jsoumagne@hdfgroup.org>2020-08-06 19:22:29 (GMT)
commit302dfeb11b4bb5d204683dbfd6824586b3863122 (patch)
tree07a5fe6a6e5ff2c75ad9ed1510e5ad3cb14bcb86 /test/trefer.c
parentee274b97f8e577b874165e93f95e7dbf8e73e675 (diff)
parentef6db167a86e6c065d46963dbd75cd325fe83813 (diff)
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Merge pull request #2715 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:fix_vlen_ref to develop
* commit 'ef6db167a86e6c065d46963dbd75cd325fe83813': H5R: fix encoding of references that are part of compound types
Diffstat (limited to 'test/trefer.c')
-rw-r--r--test/trefer.c303
1 files changed, 303 insertions, 0 deletions
diff --git a/test/trefer.c b/test/trefer.c
index 68fef09..b90ec45 100644
--- a/test/trefer.c
+++ b/test/trefer.c
@@ -24,6 +24,7 @@
#define FILE_REF_PARAM "trefer_param.h5"
#define FILE_REF_OBJ "trefer_obj.h5"
#define FILE_REF_VL_OBJ "trefer_vl_obj.h5"
+#define FILE_REF_CMPND_OBJ "trefer_cmpnd_obj.h5"
#define FILE_REF_REG "trefer_reg.h5"
#define FILE_REF_REG_1D "trefer_reg_1d.h5"
#define FILE_REF_OBJ_DEL "trefer_obj_del.h5"
@@ -56,6 +57,15 @@ typedef struct s1_t {
float c;
} s1_t;
+/* Compound datatype with reference */
+typedef struct s2_t {
+ H5R_ref_t ref0; /* reference */
+ H5R_ref_t ref1; /* reference */
+ H5R_ref_t ref2; /* reference */
+ H5R_ref_t ref3; /* reference */
+ unsigned int dim_idx; /* dimension index of the dataset */
+} s2_t;
+
#define GROUPNAME "/group"
#define GROUPNAME2 "group2"
#define GROUPNAME3 "group3"
@@ -806,6 +816,297 @@ test_reference_vlen_obj(void)
/****************************************************************
**
+** test_reference_cmpnd_obj(): Test basic H5R (reference) object reference
+** within a compound type.
+** Tests references to various kinds of objects
+**
+****************************************************************/
+static void
+test_reference_cmpnd_obj(void)
+{
+ hid_t fid1; /* HDF5 File IDs */
+ hid_t dataset, /* Dataset ID */
+ dset2; /* Dereferenced dataset ID */
+ hid_t group; /* Group ID */
+ hid_t sid1; /* Dataspace ID */
+ hid_t tid1; /* Datatype ID */
+ hsize_t dims1[] = {SPACE1_DIM1};
+ hsize_t cmpnd_dims[] = {1};
+ hid_t dapl_id; /* Dataset access property list */
+ H5R_ref_t *wbuf, /* buffer to write to disk */
+ *rbuf; /* buffer read from disk */
+ unsigned *ibuf, *obuf;
+ unsigned i, j; /* Counters */
+ H5O_type_t obj_type; /* Object type */
+ herr_t ret; /* Generic return value */
+ s2_t cmpnd_wbuf, cmpnd_rbuf;
+
+ /* Output message about test being performed */
+ MESSAGE(5, ("Testing Object Reference Functions within compound type\n"));
+
+ /* Allocate write & read buffers */
+ wbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1);
+ rbuf = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1);
+ ibuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1);
+ obuf = HDcalloc(sizeof(unsigned), SPACE1_DIM1);
+
+ for (i = 0; i < SPACE1_DIM1; i++)
+ obuf[i] = i * 3;
+
+ /* Create file */
+ fid1 = H5Fcreate(FILE_REF_CMPND_OBJ, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(fid1, H5I_INVALID_HID, "H5Fcreate");
+
+ /* Create dataspace for datasets */
+ sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
+ CHECK(sid1, H5I_INVALID_HID, "H5Screate_simple");
+
+ /* Create dataset access property list */
+ dapl_id = H5Pcreate(H5P_DATASET_ACCESS);
+ CHECK(dapl_id, H5I_INVALID_HID, "H5Pcreate");
+
+ /* Create a group */
+ group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(group, H5I_INVALID_HID, "H5Gcreate2");
+
+ /* Create a dataset (inside Group1) */
+ dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2");
+
+ /* Write selection to disk */
+ ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obuf);
+ CHECK(ret, FAIL, "H5Dwrite");
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Create another dataset (inside Group1) */
+ dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(dataset, FAIL, "H5Dcreate2");
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Close disk dataspace */
+ ret = H5Sclose(sid1);
+ CHECK(ret, FAIL, "H5Sclose");
+
+ /* Create a datatype to refer to */
+ tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
+ CHECK(tid1, H5I_INVALID_HID, "H5Tcreate");
+
+ /* Insert fields */
+ ret = H5Tinsert(tid1, "a", HOFFSET(s1_t,a), H5T_NATIVE_INT);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ ret = H5Tinsert(tid1, "b", HOFFSET(s1_t,b), H5T_NATIVE_INT);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ ret = H5Tinsert(tid1, "c", HOFFSET(s1_t,c), H5T_NATIVE_FLOAT);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ /* Save datatype for later */
+ ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(ret, FAIL, "H5Tcommit2");
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+ CHECK(ret, FAIL, "H5Tclose");
+
+ /* Close group */
+ ret = H5Gclose(group);
+ CHECK(ret, FAIL, "H5Gclose");
+
+ /* Create compound type */
+ tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s2_t));
+ CHECK(tid1, H5I_INVALID_HID, "H5Tcreate");
+
+ /* Insert fields */
+ ret = H5Tinsert(tid1, "ref0", HOFFSET(s2_t, ref0), H5T_STD_REF);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ ret = H5Tinsert(tid1, "ref1", HOFFSET(s2_t, ref1), H5T_STD_REF);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ ret = H5Tinsert(tid1, "ref2", HOFFSET(s2_t, ref2), H5T_STD_REF);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ ret = H5Tinsert(tid1, "ref3", HOFFSET(s2_t, ref3), H5T_STD_REF);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ ret = H5Tinsert(tid1, "dim_idx", HOFFSET(s2_t, dim_idx), H5T_NATIVE_INT);
+ CHECK(ret, FAIL, "H5Tinsert");
+
+ /* Create dataspace for datasets */
+ sid1 = H5Screate_simple(SPACE1_RANK, cmpnd_dims, NULL);
+ CHECK(sid1, H5I_INVALID_HID, "H5Screate_simple");
+
+ /* Create a dataset */
+ dataset = H5Dcreate2(fid1, "Dataset3", tid1, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(dataset, H5I_INVALID_HID, "H5Dcreate2");
+
+ /* Create reference to dataset */
+ ret = H5Rcreate_object(fid1, "/Group1/Dataset1", H5P_DEFAULT, &wbuf[0]);
+ CHECK(ret, FAIL, "H5Rcreate_object");
+ ret = H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type3");
+ VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3");
+
+ /* Create reference to dataset */
+ ret = H5Rcreate_object(fid1, "/Group1/Dataset2", H5P_DEFAULT, &wbuf[1]);
+ CHECK(ret, FAIL, "H5Rcreate_object");
+ ret = H5Rget_obj_type3(&wbuf[1], H5P_DEFAULT, &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type3");
+ VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type3");
+
+ /* Create reference to group */
+ ret = H5Rcreate_object(fid1, "/Group1", H5P_DEFAULT, &wbuf[2]);
+ CHECK(ret, FAIL, "H5Rcreate_object");
+ ret = H5Rget_obj_type3(&wbuf[2], H5P_DEFAULT, &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type3");
+ VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type3");
+
+ /* Create reference to named datatype */
+ ret = H5Rcreate_object(fid1, "/Group1/Datatype1", H5P_DEFAULT, &wbuf[3]);
+ CHECK(ret, FAIL, "H5Rcreate_object");
+ ret = H5Rget_obj_type3(&wbuf[3], H5P_DEFAULT, &obj_type);
+ CHECK(ret, FAIL, "H5Rget_obj_type3");
+ VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type3");
+
+ /* Store dimensions */
+ cmpnd_wbuf.ref0 = wbuf[0];
+ cmpnd_wbuf.ref1 = wbuf[1];
+ cmpnd_wbuf.ref2 = wbuf[2];
+ cmpnd_wbuf.ref3 = wbuf[3];
+ cmpnd_wbuf.dim_idx = SPACE1_DIM1;
+
+ /* Write selection to disk */
+ ret = H5Dwrite(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &cmpnd_wbuf);
+ CHECK(ret, FAIL, "H5Dwrite");
+
+ /* Close disk dataspace */
+ ret = H5Sclose(sid1);
+ CHECK(ret, FAIL, "H5Sclose");
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+ CHECK(ret, FAIL, "H5Tclose");
+
+ /* Close file */
+ ret = H5Fclose(fid1);
+ CHECK(ret, FAIL, "H5Fclose");
+
+ /* Re-open the file */
+ fid1 = H5Fopen(FILE_REF_CMPND_OBJ, H5F_ACC_RDWR, H5P_DEFAULT);
+ CHECK(fid1, H5I_INVALID_HID, "H5Fopen");
+
+ /* Open the dataset */
+ dataset = H5Dopen2(fid1, "/Dataset3", H5P_DEFAULT);
+ CHECK(dataset, H5I_INVALID_HID, "H5Dopen2");
+
+ tid1 = H5Dget_type(dataset);
+ CHECK(tid1, H5I_INVALID_HID, "H5Dget_type");
+
+ /* Read selection from disk */
+ ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, &cmpnd_rbuf);
+ CHECK(ret, FAIL, "H5Dread");
+
+ VERIFY(cmpnd_rbuf.dim_idx, SPACE1_DIM1, "H5Dread");
+ rbuf[0] = cmpnd_rbuf.ref0;
+ rbuf[1] = cmpnd_rbuf.ref1;
+ rbuf[2] = cmpnd_rbuf.ref2;
+ rbuf[3] = cmpnd_rbuf.ref3;
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+ CHECK(ret, FAIL, "H5Tclose");
+
+ /* Open dataset object */
+ dset2 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, dapl_id);
+ CHECK(dset2, H5I_INVALID_HID, "H5Ropen_object");
+
+ /* Check information in referenced dataset */
+ sid1 = H5Dget_space(dset2);
+ CHECK(sid1, H5I_INVALID_HID, "H5Dget_space");
+
+ ret = (int)H5Sget_simple_extent_npoints(sid1);
+ VERIFY(ret, SPACE1_DIM1, "H5Sget_simple_extent_npoints");
+
+ /* Read from disk */
+ ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, ibuf);
+ CHECK(ret, FAIL, "H5Dread");
+
+ for(i = 0; i < SPACE1_DIM1; i++)
+ VERIFY(ibuf[i], i * 3, "Data");
+
+ /* Close dereferenced Dataset */
+ ret = H5Dclose(dset2);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Open group object. GAPL isn't supported yet. But it's harmless to pass in */
+ group = H5Ropen_object(&rbuf[2], H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(group, H5I_INVALID_HID, "H5Ropen_object");
+
+ /* Close group */
+ ret = H5Gclose(group);
+ CHECK(ret, FAIL, "H5Gclose");
+
+ /* Open datatype object. TAPL isn't supported yet. But it's harmless to pass in */
+ tid1 = H5Ropen_object(&rbuf[3], H5P_DEFAULT, H5P_DEFAULT);
+ CHECK(tid1, H5I_INVALID_HID, "H5Ropen_object");
+
+ /* Verify correct datatype */
+ {
+ H5T_class_t tclass;
+
+ tclass = H5Tget_class(tid1);
+ VERIFY(tclass, H5T_COMPOUND, "H5Tget_class");
+
+ ret= H5Tget_nmembers(tid1);
+ VERIFY(ret, 3, "H5Tget_nmembers");
+ }
+
+ /* Close datatype */
+ ret = H5Tclose(tid1);
+ CHECK(ret, FAIL, "H5Tclose");
+
+ /* Close Dataset */
+ ret = H5Dclose(dataset);
+ CHECK(ret, FAIL, "H5Dclose");
+
+ /* Close dataset access property list */
+ ret = H5Pclose(dapl_id);
+ CHECK(ret, FAIL, "H5Pclose");
+
+ /* Close file */
+ ret = H5Fclose(fid1);
+ CHECK(ret, FAIL, "H5Fclose");
+
+ /* Destroy references */
+ for(j = 0; j < SPACE1_DIM1; j++) {
+ ret = H5Rdestroy(&wbuf[j]);
+ CHECK(ret, FAIL, "H5Rdestroy");
+ }
+ for(j = 0; j < SPACE1_DIM1; j++) {
+ ret = H5Rdestroy(&rbuf[j]);
+ CHECK(ret, FAIL, "H5Rdestroy");
+ }
+
+ /* Free memory buffers */
+ HDfree(wbuf);
+ HDfree(rbuf);
+ HDfree(ibuf);
+ HDfree(obuf);
+} /* test_reference_cmpnd_obj() */
+
+/****************************************************************
+**
** test_reference_region(): Test basic H5R (reference) object reference code.
** Tests references to various kinds of objects
**
@@ -3131,6 +3432,7 @@ test_reference(void)
test_reference_params(); /* Test for correct parameter checking */
test_reference_obj(); /* Test basic H5R object reference code */
test_reference_vlen_obj(); /* Test reference within vlen */
+ test_reference_cmpnd_obj(); /* Test reference within compound type */
/* Loop through all the combinations of low/high version bounds */
for(low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) {
@@ -3177,6 +3479,7 @@ cleanup_reference(void)
HDremove(FILE_REF_PARAM);
HDremove(FILE_REF_OBJ);
HDremove(FILE_REF_VL_OBJ);
+ HDremove(FILE_REF_CMPND_OBJ);
HDremove(FILE_REF_REG);
HDremove(FILE_REF_REG_1D);
HDremove(FILE_REF_OBJ_DEL);