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authorJacob Smith <jake.smith@hdfgroup.org>2020-03-13 22:13:17 (GMT)
committerJacob Smith <jake.smith@hdfgroup.org>2020-03-13 22:13:17 (GMT)
commitb65405439d88be6c09fe94360e7fea9856697926 (patch)
treef81fc8aa14e58a3b500cdf64a6a53b7150d8ac3e /test/use_common.c
parent7613f7e1aa89210bb625d59d79a6220c49a1f22c (diff)
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Add Splitter VFD to library.
* "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
Diffstat (limited to 'test/use_common.c')
-rw-r--r--test/use_common.c645
1 files changed, 315 insertions, 330 deletions
diff --git a/test/use_common.c b/test/use_common.c
index 4111b24..a986543 100644
--- a/test/use_common.c
+++ b/test/use_common.c
@@ -23,8 +23,13 @@
#define H5D_FRIEND /*suppress error about including H5Dpkg */
#define H5D_TESTING
-#include "H5Dpkg.h"
+#include "H5Dpkg.h" /* TODO : used to verify chunk index type (yes?) -- is there a way to do this sanity-check using the public API instead? */
+/* ----------------------------------------------------------------------------
+ * Print a common/shared usage message.
+ * Receives program name to show default test file name (<program_name>.h5).
+ * ----------------------------------------------------------------------------
+ */
void
usage(const char *prog)
{
@@ -41,10 +46,13 @@ usage(const char *prog)
HDfprintf(stderr, "\n");
} /* end usage() */
-/* Setup Use Case parameters by parsing command line options.
-* Setup default values if not set by options. */
+/* ----------------------------------------------------------------------------
+ * Setup Use Case parameters by parsing command line options.
+ * Includes default values for unspecified options.
+ * ----------------------------------------------------------------------------
+ */
int
-parse_option(int argc, char * const argv[])
+parse_option(int argc, char * const argv[], options_t * opts)
{
int ret_value=0;
int c;
@@ -56,302 +64,307 @@ parse_option(int argc, char * const argv[])
/* suppress getopt from printing error */
opterr = 0;
- while (1){
- c = getopt (argc, argv, nagg_options);
- if (-1 == c)
- break;
- switch (c) {
- case 'h':
- usage(progname_g);
- HDexit(EXIT_SUCCESS);
- break;
- case 'f': /* usecase data file name */
- UC_opts.filename = optarg;
- break;
- case 'i': /* iterations */
- if ((UC_opts.iterations = HDatoi(optarg)) <= 0) {
- HDfprintf(stderr, "bad iterations number %s, must be a positive integer\n", optarg);
- usage(progname_g);
- Hgoto_error(-1);
- };
- break;
- case 'l': /* launch reader or writer only */
- switch (*optarg) {
- case 'r': /* reader only */
- UC_opts.launch = UC_READER;
- break;
- case 'w': /* writer only */
- UC_opts.launch = UC_WRITER;
- break;
+ while (1) {
+ c = getopt(argc, argv, nagg_options);
+ if (-1 == c)
+ break;
+ switch (c) {
+ case 'h':
+ usage(opts->progname);
+ exit(EXIT_SUCCESS);
+ break;
+ case 'f': /* usecase data file name */
+ opts->filename = optarg;
+ break;
+ case 'i': /* iterations */
+ if ((opts->iterations = HDatoi(optarg)) <= 0) {
+ HDfprintf(stderr, "bad iterations number %s, must be a positive integer\n", optarg);
+ usage(opts->progname);
+ Hgoto_error(-1);
+ }
+ break;
+ case 'l': /* launch reader or writer only */
+ switch (*optarg) {
+ case 'r': /* reader only */
+ opts->launch = UC_READER;
+ break;
+ case 'w': /* writer only */
+ opts->launch = UC_WRITER;
+ break;
+ default:
+ HDfprintf(stderr, "launch value(%c) should be w or r only.\n", *optarg);
+ usage(opts->progname);
+ Hgoto_error(-1);
+ break;
+ } /* end switch (reader/writer-only mode toggle) */
+ break;
+ case 'n': /* number of planes to write/read */
+ if ((opts->nplanes = HDstrtoul(optarg, NULL, 0)) <= 0) {
+ HDfprintf(stderr, "bad number of planes %s, must be a positive integer\n", optarg);
+ usage(opts->progname);
+ Hgoto_error(-1);
+ }
+ break;
+ case 's': /* use swmr file open mode */
+ use_swmr = HDatoi(optarg);
+ if (use_swmr != 0 && use_swmr != 1) {
+ HDfprintf(stderr, "swmr value should be 0(no) or 1(yes)\n");
+ usage(opts->progname);
+ Hgoto_error(-1);
+ }
+ opts->use_swmr = (hbool_t)use_swmr;
+ break;
+ case 'y': /* Number of planes per chunk */
+ if ((opts->chunkplanes = HDstrtoul(optarg, NULL, 0)) <= 0) {
+ HDfprintf(stderr, "bad number of planes per chunk %s, must be a positive integer\n", optarg);
+ usage(opts->progname);
+ Hgoto_error(-1);
+ }
+ break;
+ case 'z': /* size of chunk=(z,z) */
+ if ((opts->chunksize = HDstrtoull(optarg, NULL, 0)) <= 0) {
+ HDfprintf(stderr, "bad chunksize %s, must be a positive integer\n", optarg);
+ usage(opts->progname);
+ Hgoto_error(-1);
+ }
+ break;
+ case '?':
+ HDfprintf(stderr, "getopt returned '%c'.\n", c);
+ Hgoto_error(-1);
default:
- HDfprintf(stderr, "launch value(%c) should be w or r only.\n", *optarg);
- usage(progname_g);
- Hgoto_error(-1);
- break;
- }
- break;
- case 'n': /* number of planes to write/read */
- if ((UC_opts.nplanes = HDstrtoul(optarg, NULL, 0)) <= 0) {
- HDfprintf(stderr, "bad number of planes %s, must be a positive integer\n", optarg);
- usage(progname_g);
- Hgoto_error(-1);
- };
- break;
- case 's': /* use swmr file open mode */
- use_swmr = HDatoi(optarg);
- if (use_swmr != 0 && use_swmr != 1) {
- HDfprintf(stderr, "swmr value should be 0(no) or 1(yes)\n");
- usage(progname_g);
+ HDfprintf(stderr, "getopt returned unexpected value.\n");
+ HDfprintf(stderr, "Unexpected value is %d\n", c);
Hgoto_error(-1);
- }
- UC_opts.use_swmr = (hbool_t)use_swmr;
- break;
- case 'y': /* Number of planes per chunk */
- if ((UC_opts.chunkplanes = HDstrtoul(optarg, NULL, 0)) <= 0) {
- HDfprintf(stderr, "bad number of planes per chunk %s, must be a positive integer\n", optarg);
- usage(progname_g);
- Hgoto_error(-1);
- };
- break;
- case 'z': /* size of chunk=(z,z) */
- if ((UC_opts.chunksize = HDstrtoull(optarg, NULL, 0)) <= 0) {
- HDfprintf(stderr, "bad chunksize %s, must be a positive integer\n", optarg);
- usage(progname_g);
- Hgoto_error(-1);
- };
- break;
- case '?':
- HDfprintf(stderr, "getopt returned '%c'.\n", c);
- Hgoto_error(-1);
- default:
- HDfprintf(stderr, "getopt returned unexpected value.\n");
- HDfprintf(stderr, "Unexpected value is %d\n", c);
- Hgoto_error(-1);
- }
- }
+ } /* end switch (argument symbol) */
+ } /* end while (there are still arguments) */
/* set test file name if not given */
- if (!UC_opts.filename){
- /* default data file name is <progname>.h5 */
- if ((UC_opts.filename=(char*)HDmalloc(HDstrlen(progname_g)+4))==NULL) {
- HDfprintf(stderr, "malloc: failed\n");
- Hgoto_error(-1);
- };
- HDstrcpy(UC_opts.filename, progname_g);
- HDstrcat(UC_opts.filename, ".h5");
+ if (!opts->filename) {
+ /* default data file name is <progname>.h5 */
+ if ((opts->filename=(char*)HDmalloc(HDstrlen(opts->progname)+4))==NULL) {
+ HDfprintf(stderr, "malloc: failed\n");
+ Hgoto_error(-1);
+ }
+ HDstrcpy(opts->filename, opts->progname);
+ HDstrcat(opts->filename, ".h5");
}
done:
- /* All done. */
return(ret_value);
-}
+} /* end parse_option() */
-/* Show parameters used for this use case */
-void show_parameters(void){
+/* ----------------------------------------------------------------------------
+ * Show parameters used for this use case.
+ * ----------------------------------------------------------------------------
+ */
+void
+show_parameters(options_t * opts)
+{
HDprintf("===Parameters used:===\n");
- printf("chunk dims=(%llu, %llu, %llu)\n", (unsigned long long)UC_opts.chunkdims[0],
- (unsigned long long)UC_opts.chunkdims[1], (unsigned long long)UC_opts.chunkdims[2]);
- printf("dataset max dims=(%llu, %llu, %llu)\n", (unsigned long long)UC_opts.max_dims[0],
- (unsigned long long)UC_opts.max_dims[1], (unsigned long long)UC_opts.max_dims[2]);
- HDprintf("number of planes to write=%llu\n", (unsigned long long)UC_opts.nplanes);
- HDprintf("using SWMR mode=%s\n", UC_opts.use_swmr ? "yes(1)" : "no(0)");
- HDprintf("data filename=%s\n", UC_opts.filename);
+ HDprintf("chunk dims=(%llu, %llu, %llu)\n", (unsigned long long)opts->chunkdims[0],
+ (unsigned long long)opts->chunkdims[1], (unsigned long long)opts->chunkdims[2]);
+ HDprintf("dataset max dims=(%llu, %llu, %llu)\n", (unsigned long long)opts->max_dims[0],
+ (unsigned long long)opts->max_dims[1], (unsigned long long)opts->max_dims[2]);
+ HDprintf("number of planes to write=%llu\n", (unsigned long long)opts->nplanes);
+ HDprintf("using SWMR mode=%s\n", opts->use_swmr ? "yes(1)" : "no(0)");
+ HDprintf("data filename=%s\n", opts->filename);
HDprintf("launch part=");
- switch (UC_opts.launch){
- case UC_READWRITE:
- printf("Reader/Writer\n");
- break;
- case UC_WRITER:
- printf("Writer\n");
- break;
- case UC_READER:
- printf("Reader\n");
- break;
- default:
- /* should not happen */
- printf("Illegal part(%d)\n", UC_opts.launch);
- };
- HDprintf("number of iterations=%d (not used yet)\n", UC_opts.iterations);
+ switch (opts->launch) {
+ case UC_READWRITE:
+ HDprintf("Reader/Writer\n");
+ break;
+ case UC_WRITER:
+ HDprintf("Writer\n");
+ break;
+ case UC_READER:
+ HDprintf("Reader\n");
+ break;
+ default:
+ /* should not happen */
+ HDprintf("Illegal part(%d)\n", opts->launch);
+ }
+ HDprintf("number of iterations=%d (not used yet)\n", opts->iterations);
HDprintf("===Parameters shown===\n");
-}
+} /* end show_parameters() */
-/* Create the skeleton use case file for testing.
+/* ----------------------------------------------------------------------------
+ * Create the skeleton use case file for testing.
* It has one 3d dataset using chunked storage.
* The dataset is (unlimited, chunksize, chunksize).
* Dataset type is 2 bytes integer.
* It starts out "empty", i.e., first dimension is 0.
*
* Return: 0 succeed; -1 fail.
+ * ----------------------------------------------------------------------------
*/
-int create_uc_file(void)
+int
+create_uc_file(options_t * opts)
{
- hsize_t dims[3]; /* Dataset starting dimensions */
- hid_t fid; /* File ID for new HDF5 file */
- hid_t dcpl; /* Dataset creation property list */
- hid_t sid; /* Dataspace ID */
- hid_t dsid; /* Dataset ID */
- hid_t fapl; /* File access property list */
+ hsize_t dims[3]; /* Dataset starting dimensions */
+ hid_t fid; /* File ID for new HDF5 file */
+ hid_t dcpl; /* Dataset creation property list */
+ hid_t sid; /* Dataspace ID */
+ hid_t dsid; /* Dataset ID */
H5D_chunk_index_t idx_type; /* Chunk index type */
- /* Create the file */
- if((fapl = h5_fileaccess()) < 0)
- return -1;
- if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
- return -1;
- if((fid = H5Fcreate(UC_opts.filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
+ if ((fid = H5Fcreate(opts->filename, H5F_ACC_TRUNC, H5P_DEFAULT, opts->fapl_id)) < 0)
return -1;
/* Set up dimension sizes */
dims[0] = 0;
- dims[1] = dims[2] = UC_opts.max_dims[1];
+ dims[1] = dims[2] = opts->max_dims[1];
/* Create dataspace for creating datasets */
- if((sid = H5Screate_simple(3, dims, UC_opts.max_dims)) < 0)
+ if ((sid = H5Screate_simple(3, dims, opts->max_dims)) < 0)
return -1;
/* Create dataset creation property list */
- if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
return -1;
- if(H5Pset_chunk(dcpl, 3, UC_opts.chunkdims) < 0)
+ if (H5Pset_chunk(dcpl, 3, opts->chunkdims) < 0)
return -1;
/* create dataset of progname */
- if((dsid = H5Dcreate2(fid, progname_g, UC_DATATYPE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
- return -1;
+ if ((dsid = H5Dcreate2(fid, opts->progname, UC_DATATYPE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ return -1;
/* Check that the chunk index type is not version 1 B-tree.
* Version 1 B-trees are not supported under SWMR.
*/
- if(H5D__layout_idx_type_test(dsid, &idx_type) < 0)
+ if (H5D__layout_idx_type_test(dsid, &idx_type) < 0)
return -1;
- if(idx_type == H5D_CHUNK_IDX_BTREE) {
+ if (idx_type == H5D_CHUNK_IDX_BTREE) {
HDfprintf(stderr, "ERROR: Chunk index is version 1 B-tree: aborting.\n");
return -1;
}
/* Close everything */
- if(H5Dclose(dsid) < 0)
- return -1;
- if(H5Pclose(fapl) < 0)
+ if (H5Dclose(dsid) < 0)
return -1;
- if(H5Pclose(dcpl) < 0)
+ if (H5Pclose(dcpl) < 0)
return -1;
- if(H5Sclose(sid) < 0)
+ if (H5Sclose(sid) < 0)
return -1;
- if(H5Fclose(fid) < 0)
+ if (H5Fclose(fid) < 0)
return -1;
return 0;
-}
+} /* end create_uc_file() */
-/* Append planes, each of (1,2*chunksize,2*chunksize) to the dataset.
+/* ----------------------------------------------------------------------------
+ * Append planes, each of (1,2*chunksize,2*chunksize) to the dataset.
* In other words, 4 chunks are appended to the dataset at a time.
* Fill each plan with the plane number and then write it at the nth plane.
* Increase the plane number and repeat till the end of dataset, when it
* reaches chunksize long. End product is a (2*chunksize)^3 cube.
*
* Return: 0 succeed; -1 fail.
+ * ----------------------------------------------------------------------------
*/
-int write_uc_file(hbool_t tosend, hid_t fid)
+int
+write_uc_file(hbool_t tosend, hid_t file_id, options_t * opts)
{
- hid_t dsid; /* dataset ID */
- hid_t dcpl; /* Dataset creation property list */
- UC_CTYPE *buffer, *bufptr; /* data buffer */
- hsize_t cz=UC_opts.chunksize; /* Chunk size */
- hid_t f_sid; /* dataset file space id */
- hid_t m_sid; /* memory space id */
- int rank; /* rank */
- hsize_t chunk_dims[3]; /* Chunk dimensions */
- hsize_t dims[3]; /* Dataspace dimensions */
- hsize_t memdims[3]; /* Memory space dimensions */
- hsize_t start[3] = {0,0,0}, count[3]; /* Hyperslab selection values */
- hsize_t i, j, k;
-
- if(tosend)
+ hid_t dsid; /* dataset ID */
+ hid_t dcpl; /* Dataset creation property list */
+ UC_CTYPE *buffer, *bufptr; /* data buffer */
+ hsize_t cz=opts->chunksize; /* Chunk size */
+ hid_t f_sid; /* dataset file space id */
+ hid_t m_sid; /* memory space id */
+ int rank; /* rank */
+ hsize_t chunk_dims[3]; /* Chunk dimensions */
+ hsize_t dims[3]; /* Dataspace dimensions */
+ hsize_t memdims[3]; /* Memory space dimensions */
+ hsize_t start[3] = {0,0,0}, count[3]; /* Hyperslab selection values */
+ hsize_t i, j, k;
+
+ if (TRUE == tosend) {
/* Send a message that H5Fopen is complete--releasing the file lock */
h5_send_message(WRITER_MESSAGE, NULL, NULL);
+ }
/* Open the dataset of the program name */
- if((dsid = H5Dopen2(fid, progname_g, H5P_DEFAULT)) < 0){
+ if ((dsid = H5Dopen2(file_id, opts->progname, H5P_DEFAULT)) < 0) {
HDfprintf(stderr, "H5Dopen2 failed\n");
return -1;
}
/* Find chunksize used */
- if ((dcpl = H5Dget_create_plist(dsid)) < 0){
+ if ((dcpl = H5Dget_create_plist(dsid)) < 0) {
HDfprintf(stderr, "H5Dget_create_plist failed\n");
return -1;
}
- if (H5D_CHUNKED != H5Pget_layout(dcpl)){
+ if (H5D_CHUNKED != H5Pget_layout(dcpl)) {
HDfprintf(stderr, "storage layout is not chunked\n");
return -1;
}
- if ((rank = H5Pget_chunk(dcpl, 3, chunk_dims)) != 3){
+ if ((rank = H5Pget_chunk(dcpl, 3, chunk_dims)) != 3) {
HDfprintf(stderr, "storage rank is not 3\n");
return -1;
}
/* verify chunk_dims against set paramenters */
- if (chunk_dims[0]!=UC_opts.chunkdims[0] || chunk_dims[1] != cz || chunk_dims[2] != cz){
+ if (chunk_dims[0]!=opts->chunkdims[0] || chunk_dims[1] != cz || chunk_dims[2] != cz) {
HDfprintf(stderr, "chunk size is not as expected. Got dims=(%llu,%llu,%llu)\n",
- (unsigned long long)chunk_dims[0], (unsigned long long)chunk_dims[1],
+ (unsigned long long)chunk_dims[0], (unsigned long long)chunk_dims[1],
(unsigned long long)chunk_dims[2]);
return -1;
}
/* allocate space for data buffer 1 X dims[1] X dims[2] of UC_CTYPE */
memdims[0]=1;
- memdims[1] = UC_opts.dims[1];
- memdims[2] = UC_opts.dims[2];
+ memdims[1] = opts->dims[1];
+ memdims[2] = opts->dims[2];
if ((buffer=(UC_CTYPE*)HDmalloc((size_t)memdims[1]*(size_t)memdims[2]*sizeof(UC_CTYPE)))==NULL) {
HDfprintf(stderr, "malloc: failed\n");
return -1;
- };
+ }
/*
* Get dataset rank and dimension.
*/
f_sid = H5Dget_space(dsid); /* Get filespace handle first. */
rank = H5Sget_simple_extent_ndims(f_sid);
- if (rank != UC_RANK){
+ if (rank != UC_RANK) {
HDfprintf(stderr, "rank(%d) of dataset does not match\n", rank);
return -1;
}
- if (H5Sget_simple_extent_dims(f_sid, dims, NULL) < 0){
+ if (H5Sget_simple_extent_dims(f_sid, dims, NULL) < 0) {
HDfprintf(stderr, "H5Sget_simple_extent_dims got error\n");
return -1;
}
HDprintf("dataset rank %d, dimensions %llu x %llu x %llu\n",
- rank, (unsigned long long)(dims[0]), (unsigned long long)(dims[1]),
+ rank, (unsigned long long)(dims[0]), (unsigned long long)(dims[1]),
(unsigned long long)(dims[2]));
/* verify that file space dims are as expected and are consistent with memory space dims */
- if (dims[0] != 0 || dims[1] != memdims[1] || dims[2] != memdims[2]){
+ if (dims[0] != 0 || dims[1] != memdims[1] || dims[2] != memdims[2]) {
HDfprintf(stderr, "dataset is not empty. Got dims=(%llu,%llu,%llu)\n",
- (unsigned long long)dims[0], (unsigned long long)dims[1],
+ (unsigned long long)dims[0], (unsigned long long)dims[1],
(unsigned long long)dims[2]);
return -1;
}
/* setup mem-space for buffer */
- if ((m_sid=H5Screate_simple(rank, memdims, NULL))<0){
+ if ((m_sid=H5Screate_simple(rank, memdims, NULL))<0) {
HDfprintf(stderr, "H5Screate_simple for memory failed\n");
return -1;
- };
+ }
/* write planes */
count[0]=1;
count[1]=dims[1];
count[2]=dims[2];
- for (i=0; i<UC_opts.nplanes; i++){
+ for (i=0; i < opts->nplanes; i++) {
/* fill buffer with value i+1 */
bufptr = buffer;
- for (j=0; j<dims[1]; j++)
- for (k=0; k<dims[2]; k++)
+ for (j=0; j < dims[1]; j++) {
+ for (k=0; k < dims[2]; k++) {
*bufptr++ = (UC_CTYPE)i;
+ }
+ }
/* Cork the dataset's metadata in the cache, if SWMR is enabled */
- if(UC_opts.use_swmr) {
- if(H5Odisable_mdc_flushes(dsid) < 0) {
+ if (opts->use_swmr) {
+ if (H5Odisable_mdc_flushes(dsid) < 0) {
HDfprintf(stderr, "H5Odisable_mdc_flushes failed\n");
return -1;
}
@@ -359,64 +372,65 @@ int write_uc_file(hbool_t tosend, hid_t fid)
/* extend the dataset by one for new plane */
dims[0]=i+1;
- if(H5Dset_extent(dsid, dims) < 0){
+ if (H5Dset_extent(dsid, dims) < 0) {
HDfprintf(stderr, "H5Dset_extent failed\n");
return -1;
}
/* Get the dataset's dataspace */
- if((f_sid = H5Dget_space(dsid)) < 0){
+ if ((f_sid = H5Dget_space(dsid)) < 0) {
HDfprintf(stderr, "H5Dset_extent failed\n");
return -1;
}
start[0]=i;
/* Choose the next plane to write */
- if(H5Sselect_hyperslab(f_sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0){
+ if (H5Sselect_hyperslab(f_sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0) {
HDfprintf(stderr, "Failed H5Sselect_hyperslab\n");
return -1;
}
/* Write plane to the dataset */
- if(H5Dwrite(dsid, UC_DATATYPE, m_sid, f_sid, H5P_DEFAULT, buffer) < 0){
+ if (H5Dwrite(dsid, UC_DATATYPE, m_sid, f_sid, H5P_DEFAULT, buffer) < 0) {
HDfprintf(stderr, "Failed H5Dwrite\n");
return -1;
}
/* Uncork the dataset's metadata from the cache, if SWMR is enabled */
- if(UC_opts.use_swmr)
- if(H5Oenable_mdc_flushes(dsid) < 0) {
+ if (opts->use_swmr) {
+ if (H5Oenable_mdc_flushes(dsid) < 0) {
HDfprintf(stderr, "H5Oenable_mdc_flushes failed\n");
return -1;
}
+ }
/* flush file to make the just written plane available. */
- if(H5Dflush(dsid) < 0) {
+ if (H5Dflush(dsid) < 0) {
HDfprintf(stderr, "Failed to H5Fflush file\n");
return -1;
}
- }
+ } /* end for each plane to write */
/* Done writing. Free/Close all resources including data file */
HDfree(buffer);
- if (H5Dclose(dsid) < 0){
+ if (H5Dclose(dsid) < 0) {
HDfprintf(stderr, "Failed to close datasete\n");
return -1;
}
- if (H5Sclose(m_sid) < 0){
+ if (H5Sclose(m_sid) < 0) {
HDfprintf(stderr, "Failed to close memory space\n");
return -1;
}
- if (H5Sclose(f_sid) < 0){
+ if (H5Sclose(f_sid) < 0) {
HDfprintf(stderr, "Failed to close file space\n");
return -1;
}
return 0;
-}
-
+} /* end write_uc_file() */
-/* Read planes from the dataset.
+/* ----------------------------------------------------------------------------
+ * Read planes from the dataset.
* It expects the dataset is being changed (growing).
* It checks the unlimited dimension (1st one). When it increases,
* it will read in the new planes, one by one, and verify the data correctness.
@@ -425,61 +439,51 @@ int write_uc_file(hbool_t tosend, hid_t fid)
* that is the expected end of data, the reader exits.
*
* Return: 0 succeed; -1 fail.
+ * ----------------------------------------------------------------------------
*/
-int read_uc_file(hbool_t towait)
+int
+read_uc_file(hbool_t towait, options_t * opts)
{
- hid_t fapl; /* file access property list ID */
- hid_t fid; /* File ID for new HDF5 file */
- hid_t dsid; /* dataset ID */
- char *name;
- UC_CTYPE *buffer, *bufptr; /* read data buffer */
- hid_t f_sid; /* dataset file space id */
- hid_t m_sid; /* memory space id */
- int rank; /* rank */
- hsize_t dims[3]; /* Dataspace dimensions */
- hsize_t memdims[3]; /* Memory space dimensions */
- hsize_t nplane=0, nplane_old=0; /* nth plane, last nth plane */
- hsize_t start[3] = {0,0,0}, count[3]; /* Hyperslab selection values */
- hsize_t j, k;
- int nreadererr=0;
- int nerrs;
- int nonewplane;
+ hid_t fid; /* File ID for new HDF5 file */
+ hid_t dsid; /* dataset ID */
+ UC_CTYPE *buffer, *bufptr; /* read data buffer */
+ hid_t f_sid; /* dataset file space id */
+ hid_t m_sid; /* memory space id */
+ int rank; /* rank */
+ hsize_t dims[3]; /* Dataspace dimensions */
+ hsize_t memdims[3]; /* Memory space dimensions */
+ hsize_t nplane=0, nplanes_seen=0; /* nth plane, last nth plane */
+ hsize_t start[3] = {0,0,0}, count[3]; /* Hyperslab selection values */
+ hsize_t j, k;
+ int nreadererr=0;
+ int nerrs;
+ int loops_waiting_for_plane;
/* Before reading, wait for the message that H5Fopen is complete--file lock is released */
- if(towait && h5_wait_message(WRITER_MESSAGE) < 0) {
+ if (towait && h5_wait_message(WRITER_MESSAGE) < 0) {
HDfprintf(stderr, "Cannot find writer message file...failed\n");
return -1;
}
- name = UC_opts.filename;
-
- /* Open the file */
- if((fapl = h5_fileaccess()) < 0)
- return -1;
- if((fid = H5Fopen(name, H5F_ACC_RDONLY | (UC_opts.use_swmr ? H5F_ACC_SWMR_READ : 0), fapl)) < 0){
+ HDfprintf(stderr, "Opening to read %s\n", opts->filename);
+ if ((fid = H5Fopen(opts->filename, H5F_ACC_RDONLY | (opts->use_swmr ? H5F_ACC_SWMR_READ : 0), opts->fapl_id)) < 0) {
HDfprintf(stderr, "H5Fopen failed\n");
return -1;
}
- if (H5Pclose(fapl) < 0){
- HDfprintf(stderr, "Failed to property list\n");
- return -1;
- }
-
- /* Open the dataset of the program name */
- if((dsid = H5Dopen2(fid, progname_g, H5P_DEFAULT)) < 0){
+ if ((dsid = H5Dopen2(fid, opts->progname, H5P_DEFAULT)) < 0) {
HDfprintf(stderr, "H5Dopen2 failed\n");
return -1;
}
- /* allocate space for data buffer 1 X dims[1] X dims[2] of UC_CTYPE */
- memdims[0]=1;
- memdims[1] = UC_opts.dims[1];
- memdims[2] = UC_opts.dims[2];
+ /* Allocate space for data buffer 1 X dims[1] X dims[2] of UC_CTYPE */
+ memdims[0] = 1;
+ memdims[1] = opts->dims[1];
+ memdims[2] = opts->dims[2];
if ((buffer=(UC_CTYPE*)HDmalloc((size_t)memdims[1]*(size_t)memdims[2]*sizeof(UC_CTYPE)))==NULL) {
HDfprintf(stderr, "malloc: failed\n");
return -1;
- };
+ }
/*
* Get dataset rank and dimension.
@@ -487,11 +491,11 @@ int read_uc_file(hbool_t towait)
*/
f_sid = H5Dget_space(dsid); /* Get filespace handle first. */
rank = H5Sget_simple_extent_ndims(f_sid);
- if (rank != UC_RANK){
+ if (rank != UC_RANK) {
HDfprintf(stderr, "rank(%d) of dataset does not match\n", rank);
return -1;
}
- if (H5Sget_simple_extent_dims(f_sid, dims, NULL) < 0){
+ if (H5Sget_simple_extent_dims(f_sid, dims, NULL) < 0) {
HDfprintf(stderr, "H5Sget_simple_extent_dims got error\n");
return -1;
}
@@ -499,7 +503,7 @@ int read_uc_file(hbool_t towait)
rank, (unsigned long long)(dims[0]), (unsigned long long)(dims[1]),
(unsigned long long)(dims[2]));
/* verify that file space dims are as expected and are consistent with memory space dims */
- if (dims[1] != memdims[1] || dims[2] != memdims[2]){
+ if (dims[1] != memdims[1] || dims[2] != memdims[2]) {
HDfprintf(stderr, "dataset dimension is not as expected. Got dims=(%llu,%llu,%llu)\n",
(unsigned long long)dims[0], (unsigned long long)dims[1],
(unsigned long long)dims[2]);
@@ -509,120 +513,101 @@ int read_uc_file(hbool_t towait)
return -1;
}
- /* setup mem-space for buffer */
- if ((m_sid=H5Screate_simple(rank, memdims, NULL))<0){
+ /* Setup mem-space for buffer */
+ if ((m_sid=H5Screate_simple(rank, memdims, NULL)) < 0) {
HDfprintf(stderr, "H5Screate_simple for memory failed\n");
return -1;
- };
+ }
- /* Read 1 plane at a time whenever the dataset grows larger
- * (along dim[0]) */
- count[0]=1;
- count[1]=dims[1];
- count[2]=dims[2];
+ /* Read 1 plane at a time whenever the dataset grows larger (along dim[0]) */
+ count[0] = 1;
+ count[1] = dims[1];
+ count[2] = dims[2];
/* quit when all nplanes have been read */
- nonewplane=0;
- while (nplane_old < UC_opts.nplanes ){
- /* print progress message according to if new planes are availalbe */
- if (nplane_old < dims[0]) {
- if (nonewplane){
- /* end the previous message */
- HDprintf("\n");
- nonewplane=0;
- }
- HDprintf("reading planes %llu to %llu\n", (unsigned long long)nplane_old,
+ loops_waiting_for_plane=0;
+ while (nplanes_seen < opts->nplanes) {
+ /* print progress message according to if new planes are availalbe */
+ if (nplanes_seen < dims[0]) {
+ if (loops_waiting_for_plane) {
+ /* end the previous message */
+ HDprintf("\n");
+ loops_waiting_for_plane=0;
+ }
+ HDprintf("reading planes %llu to %llu\n", (unsigned long long)nplanes_seen,
(unsigned long long)dims[0]);
- }else{
- if (nonewplane){
- HDprintf(".");
- if (nonewplane>=30){
- HDfprintf(stderr, "waited too long for new plane, quit.\n");
- return -1;
- }
- }else{
- /* print mesg only the first time; dots still no new plane */
- HDprintf("no new planes to read ");
}
- nonewplane++;
- /* pause for a second */
- HDsleep(1);
- }
- for (nplane=nplane_old; nplane < dims[0]; nplane++){
- /* read planes between last old nplanes and current extent */
- /* Get the dataset's dataspace */
- if((f_sid = H5Dget_space(dsid)) < 0){
- HDfprintf(stderr, "H5Dget_space failed\n");
- return -1;
+ else {
+ if (loops_waiting_for_plane) {
+ HDprintf(".");
+ if (loops_waiting_for_plane>=30) {
+ HDfprintf(stderr, "waited too long for new plane, quit.\n");
+ return -1;
+ }
+ }
+ else {
+ /* print mesg only the first time; dots still no new plane */
+ HDprintf("waiting for new planes to read ");
+ }
+ loops_waiting_for_plane++;
+ /* pause for a second */
+ HDsleep(1);
}
- start[0]=nplane;
- /* Choose the next plane to read */
- if(H5Sselect_hyperslab(f_sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0){
- HDfprintf(stderr, "H5Sselect_hyperslab failed\n");
- return -1;
- }
+ for (nplane=nplanes_seen; nplane < dims[0]; nplane++) {
+ /* read planes between last old nplanes and current extent */
+ /* Get the dataset's dataspace */
+ if ((f_sid = H5Dget_space(dsid)) < 0) {
+ HDfprintf(stderr, "H5Dget_space failed\n");
+ return -1;
+ }
- /* Read the plane from the dataset */
- if(H5Dread(dsid, UC_DATATYPE, m_sid, f_sid, H5P_DEFAULT, buffer) < 0){
- HDfprintf(stderr, "H5Dread failed\n");
- return -1;
- }
+ start[0]=nplane;
+ /* Choose the next plane to read */
+ if (H5Sselect_hyperslab(f_sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0) {
+ HDfprintf(stderr, "H5Sselect_hyperslab failed\n");
+ return -1;
+ }
- /* compare read data with expected data value which is nplane */
- bufptr = buffer;
- nerrs=0;
- for (j=0; j<dims[1]; j++){
- for (k=0; k<dims[2]; k++){
- if ((hsize_t)*bufptr++ != nplane){
- if (++nerrs < ErrorReportMax){
- HDfprintf(stderr,
- "found error %llu plane(%llu,%llu), expected %llu, got %d\n",
- (unsigned long long)nplane, (unsigned long long)j,
- (unsigned long long)k, (unsigned long long)nplane, (int)*(bufptr-1));
- }
- }
+ /* Read the plane from the dataset */
+ if (H5Dread(dsid, UC_DATATYPE, m_sid, f_sid, H5P_DEFAULT, buffer) < 0) {
+ HDfprintf(stderr, "H5Dread failed\n");
+ return -1;
}
- }
- if (nerrs){
- nreadererr++;
- HDfprintf(stderr, "found %d unexpected values in plane %llu\n", nerrs,
+
+ /* compare read data with expected data value which is nplane */
+ bufptr = buffer;
+ nerrs=0;
+ for (j=0; j < dims[1]; j++) {
+ for (k=0; k < dims[2]; k++) {
+ if ((hsize_t)*bufptr++ != nplane) {
+ if (++nerrs < ErrorReportMax) {
+ HDfprintf(stderr,
+ "found error %llu plane(%llu,%llu), expected %llu, got %d\n",
+ (unsigned long long)nplane, (unsigned long long)j,
+ (unsigned long long)k, (unsigned long long)nplane, (int)*(bufptr-1));
+ } /* end if should print error */
+ } /* end if value mismatch */
+ } /* end for plane second dimension */
+ } /* end for plane first dimension */
+ if (nerrs) {
+ nreadererr++;
+ HDfprintf(stderr, "found %d unexpected values in plane %llu\n", nerrs,
(unsigned long long)nplane);
- }
- }
- /* Have read all current planes */
- nplane_old=dims[0];
+ }
+ } /* end for each plane added since last read */
- /* check if dataset has grown since last time */
-#if 0
- /* close dsid and file, then reopen them */
- if (H5Dclose(dsid) < 0){
- HDfprintf(stderr, "H5Dclose failed\n");
- return -1;
- }
- if (H5Fclose(fid) < 0){
- HDfprintf(stderr, "H5Fclose failed\n");
- return -1;
- }
- if((fid = H5Fopen(name, H5F_ACC_RDONLY | (UC_opts.use_swmr ? H5F_ACC_SWMR_READ : 0), H5P_DEFAULT)) < 0){
- HDfprintf(stderr, "H5Fopen failed\n");
- return -1;
- }
- if((dsid = H5Dopen2(fid, progname_g, H5P_DEFAULT)) < 0){
- HDfprintf(stderr, "H5Dopen2 failed\n");
- return -1;
- }
-#else
- H5Drefresh(dsid);
-#endif
- f_sid = H5Dget_space(dsid); /* Get filespace handle first. */
- if (H5Sget_simple_extent_dims(f_sid, dims, NULL) < 0){
- HDfprintf(stderr, "H5Sget_simple_extent_dims got error\n");
- return -1;
- }
- }
+ nplanes_seen=dims[0];
+
+ /* check if dataset has grown since last time (update dims) */
+ H5Drefresh(dsid);
+ f_sid = H5Dget_space(dsid); /* Get filespace handle first. */
+ if (H5Sget_simple_extent_dims(f_sid, dims, NULL) < 0) {
+ HDfprintf(stderr, "H5Sget_simple_extent_dims got error\n");
+ return -1;
+ }
+ } /* end while (expecting more planes to read) */
- /* Close the file */
- if(H5Fclose(fid) < 0) {
+ if (H5Fclose(fid) < 0) {
HDfprintf(stderr, "H5Fclose failed\n");
return -1;
}
@@ -631,7 +616,7 @@ int read_uc_file(hbool_t towait)
return -1;
else
return 0;
-} /* read_uc_file() */
+} /* end read_uc_file() */
#endif /* H5_HAVE_FORK */