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author | Vailin Choi <vchoi@jam.ad.hdfgroup.org> | 2018-11-14 21:35:35 (GMT) |
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committer | Vailin Choi <vchoi@jam.ad.hdfgroup.org> | 2018-11-14 21:35:35 (GMT) |
commit | ce2748f0114cb1eae00799f8349a5451152c7fa3 (patch) | |
tree | fd3e39e6de7b37651a2c7047bd3ad128b5c4e204 /test/vfd_swmr_remove_writer.c | |
parent | e62f4bd4fab00b0cd03e269a858c21558a9321fa (diff) | |
download | hdf5-ce2748f0114cb1eae00799f8349a5451152c7fa3.zip hdf5-ce2748f0114cb1eae00799f8349a5451152c7fa3.tar.gz hdf5-ce2748f0114cb1eae00799f8349a5451152c7fa3.tar.bz2 |
(A) Fixes for the assertion failures described in issue #2 (see John Mainzer's last checkin message):
--src/H5PB.c: checks for size >= page size
--src/H5MF.c: disable/enable page buffering in H5MF_tidy_self_referential_fsm_hack()
--src/H5MFsection.c: call H5PB_remove_entry() for both raw/metadata pages in H5MF__sect_small_merge()
(B) Port and modify existing concurrent swmr tests to VFD SWMR. Also modify the following:
--remove flushes from VFD SWMR writer tests
--set Nreaders to 0 in test/testvfdswmr.sh.in to test for writers only
Please enter the commit message for your changes. Lines starting
Diffstat (limited to 'test/vfd_swmr_remove_writer.c')
-rw-r--r-- | test/vfd_swmr_remove_writer.c | 407 |
1 files changed, 407 insertions, 0 deletions
diff --git a/test/vfd_swmr_remove_writer.c b/test/vfd_swmr_remove_writer.c new file mode 100644 index 0000000..12131c4 --- /dev/null +++ b/test/vfd_swmr_remove_writer.c @@ -0,0 +1,407 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/*------------------------------------------------------------------------- + * + * Created: vfd_swmr_remove_writer.c + * (copied and modified from swmr_remove_writer.c) + * + * Purpose: Removes data from a randomly selected subset of the datasets + * in the VFD SWMR test file. + * + * This program is intended to run concurrently with the + * vfd_swmr_remove_reader program. It is also run AFTER a sequential + * (not concurrent!) invoking of vfd_swmr_writer so the writer + * can dump a bunch of data into the datasets. Otherwise, + * there wouldn't be much to shrink :) + * + *------------------------------------------------------------------------- + */ + +/***********/ +/* Headers */ +/***********/ + +#include "h5test.h" +#include "vfd_swmr_common.h" + +/****************/ +/* Local Macros */ +/****************/ + +/* The maximum number of records to remove in one step */ +#define MAX_REMOVE_SIZE 10 + +/********************/ +/* Local Prototypes */ +/********************/ + +static hid_t open_skeleton(const char *filename, unsigned verbose, unsigned old); +static int remove_records(hid_t fid, unsigned verbose, unsigned long nshrinks, + unsigned long flush_count); +static void usage(void); + + +/*------------------------------------------------------------------------- + * Function: open_skeleton + * + * Purpose: Opens the SWMR HDF5 file and datasets. + * + * Parameters: const char *filename + * The filename of the SWMR HDF5 file to open + * + * unsigned verbose + * Whether or not to emit verbose console messages + * + * Return: Success: The file ID of the opened SWMR file + * The dataset IDs are stored in a global array + * + * Failure: -1 + * + *------------------------------------------------------------------------- + */ +static hid_t +open_skeleton(const char *filename, unsigned verbose, unsigned old) +{ + hid_t fid; /* File ID for new HDF5 file */ + hid_t fapl; /* File access property list */ + hid_t sid; /* Dataspace ID */ + hsize_t dim[2]; /* Dataspace dimensions */ + unsigned u, v; /* Local index variable */ + H5F_vfd_swmr_config_t *config = NULL; /* Configuration for VFD SWMR */ + + HDassert(filename); + + /* Create file access property list */ + if((fapl = h5_fileaccess()) < 0) + return -1; + + /* FOR NOW: set to use latest format, the "old" parameter is not used */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) + return -1; + +#ifdef QAK +/* Increase the initial size of the metadata cache */ + { + H5AC_cache_config_t mdc_config; + + mdc_config.version = H5AC__CURR_CACHE_CONFIG_VERSION; + H5Pget_mdc_config(fapl, &mdc_config); + HDfprintf(stderr, "mdc_config.initial_size = %lu\n", (unsigned long)mdc_config.initial_size); + HDfprintf(stderr, "mdc_config.epoch_length = %lu\n", (unsigned long)mdc_config.epoch_length); + mdc_config.set_initial_size = 1; + mdc_config.initial_size = 16 * 1024 * 1024; + /* mdc_config.epoch_length = 5000; */ + H5Pset_mdc_config(fapl, &mdc_config); + } +#endif /* QAK */ + +#ifdef QAK + H5Pset_fapl_log(fapl, "append.log", H5FD_LOG_ALL, (size_t)(512 * 1024 * 1024)); +#endif /* QAK */ + + /* + * Set up to open the file with VFD SWMR configured. + */ + + /* Enable page buffering */ + if(H5Pset_page_buffer_size(fapl, 4096, 0, 0) < 0) + return -1; + + /* Allocate memory for the configuration structure */ + if((config = (H5F_vfd_swmr_config_t *)HDmalloc(sizeof(H5F_vfd_swmr_config_t))) == NULL) + return -1; + + config->version = H5F__CURR_VFD_SWMR_CONFIG_VERSION; + config->tick_len = 4; + config->max_lag = 6; + config->vfd_swmr_writer = TRUE; + config->md_pages_reserved = 2; + HDstrcpy(config->md_file_path, "./my_md_file"); + + /* Enable VFD SWMR configuration */ + if(H5Pset_vfd_swmr_config(fapl, config) < 0) + return -1; + + /* Open the file */ + if((fid = H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0) + return -1; + + /* Close file access property list */ + if(H5Pclose(fapl) < 0) + return -1; + + if(config) + HDfree(config); + + /* Emit informational message */ + if(verbose) + HDfprintf(stderr, "Opening datasets\n"); + + /* Open the datasets */ + for(u = 0; u < NLEVELS; u++) + for(v = 0; v < symbol_count[u]; v++) { + if((symbol_info[u][v].dsid = H5Dopen2(fid, symbol_info[u][v].name, H5P_DEFAULT)) < 0) + return -1; + if((sid = H5Dget_space(symbol_info[u][v].dsid)) < 0) + return -1; + if(2 != H5Sget_simple_extent_ndims(sid)) + return -1; + if(H5Sget_simple_extent_dims(sid, dim, NULL) < 0) + return -1; + symbol_info[u][v].nrecords = dim[1]; + } /* end for */ + + return fid; +} /* open_skeleton() */ + + +/*------------------------------------------------------------------------- + * Function: remove_records + * + * Purpose: Removes a specified number of records from random datasets in + * the SWMR test file. + * + * Parameters: hid_t fid + * The file ID of the SWMR HDF5 file + * + * unsigned verbose + * Whether or not to emit verbose console messages + * + * unsigned long nshrinks + * # of records to remove from the datasets + * + * unsigned long flush_count + * # of records to write before flushing the file to disk + * + * Return: Success: 0 + * Failure: -1 + * + *------------------------------------------------------------------------- + */ +static int +remove_records(hid_t fid, unsigned verbose, unsigned long nshrinks, unsigned long flush_count) +{ + unsigned long shrink_to_flush; /* # of removals before flush */ + hsize_t dim[2] = {1,0}; /* Dataspace dimensions */ + unsigned long u, v; /* Local index variables */ + + HDassert(fid >= 0); + + /* Remove records from random datasets, according to frequency distribution */ + shrink_to_flush = flush_count; + for(u = 0; u < nshrinks; u++) { + symbol_info_t *symbol; /* Symbol to remove record from */ + hsize_t remove_size; /* Size to reduce dataset dimension by */ + + /* Get a random dataset, according to the symbol distribution */ + symbol = choose_dataset(); + + /* Shrink the dataset's dataspace */ + remove_size = (hsize_t)HDrandom() % MAX_REMOVE_SIZE + 1; + if(remove_size > symbol->nrecords) + symbol->nrecords = 0; + else + symbol->nrecords -= remove_size; + dim[1] = symbol->nrecords; + if(H5Dset_extent(symbol->dsid, dim) < 0) + return -1; + + /* Check for flushing file */ + if(flush_count > 0) { + /* Decrement count of records to write before flushing */ + shrink_to_flush--; + + /* Check for counter being reached */ + if(0 == shrink_to_flush) { +#ifdef TEMP_OUT + /* Flush contents of file */ + if(H5Fflush(fid, H5F_SCOPE_GLOBAL) < 0) + return -1; +#endif + + /* Reset flush counter */ + shrink_to_flush = flush_count; + } /* end if */ + } /* end if */ + } /* end for */ + + /* Emit informational message */ + if(verbose) + HDfprintf(stderr, "Closing datasets\n"); + + /* Close the datasets */ + for(u = 0; u < NLEVELS; u++) + for(v = 0; v < symbol_count[u]; v++) + if(H5Dclose(symbol_info[u][v].dsid) < 0) + return -1; + + return 0; +} /* remove_records() */ + +static void +usage(void) +{ + printf("\n"); + printf("Usage error!\n"); + printf("\n"); + printf("Usage: swmr_remove_writer [-q] [-o] [-f <# of shrinks between flushing\n"); + printf(" file contents>] [-r <random seed>] <# of shrinks>\n"); + printf("\n"); + printf("<# of shrinks between flushing file contents> should be 0 (for no\n"); + printf("flushing) or between 1 and (<# of shrinks> - 1)\n"); + printf("\n"); + printf("Defaults to verbose (no '-q' given), latest format when opening file (no '-o' given),\n"); + printf("flushing every 1000 shrinks ('-f 1000'), and will generate a random seed (no -r given).\n"); + printf("\n"); + HDexit(1); +} /* usage() */ + +int main(int argc, const char *argv[]) +{ + hid_t fid; /* File ID for file opened */ + long nshrinks = 0; /* # of times to shrink the dataset */ + long flush_count = 1000; /* # of records to write between flushing file */ + unsigned verbose = 1; /* Whether to emit some informational messages */ + unsigned old = 0; /* Whether to use non-latest-format when opening file */ + unsigned use_seed = 0; /* Set to 1 if a seed was set on the command line */ + unsigned random_seed = 0; /* Random # seed */ + unsigned u; /* Local index variable */ + int temp; + + /* Parse command line options */ + if(argc < 2) + usage(); + if(argc > 1) { + u = 1; + while(u < (unsigned)argc) { + if(argv[u][0] == '-') { + switch(argv[u][1]) { + /* # of records to write between flushing file */ + case 'f': + flush_count = HDatol(argv[u + 1]); + if(flush_count < 0) + usage(); + u += 2; + break; + + /* Be quiet */ + case 'q': + verbose = 0; + u++; + break; + + /* Random # seed */ + case 'r': + use_seed = 1; + temp = HDatoi(argv[u + 1]); + random_seed = (unsigned)temp; + u += 2; + break; + + /* Use non-latest-format when opening file */ + case 'o': + old = 1; + u++; + break; + + default: + usage(); + break; + } /* end switch */ + } /* end if */ + else { + /* Get the number of records to append */ + nshrinks = HDatol(argv[u]); + if(nshrinks <= 0) + usage(); + + u++; + } /* end else */ + } /* end while */ + } /* end if */ + if(nshrinks <= 0) + usage(); + if(flush_count >= nshrinks) + usage(); + + /* Emit informational message */ + if(verbose) { + HDfprintf(stderr, "Parameters:\n"); + HDfprintf(stderr, "\t# of shrinks between flushes = %ld\n", flush_count); + HDfprintf(stderr, "\t# of shrinks = %ld\n", nshrinks); + } /* end if */ + + /* Set the random seed */ + if(0 == use_seed) { + struct timeval t; + HDgettimeofday(&t, NULL); + random_seed = (unsigned)(t.tv_usec); + } /* end if */ + HDsrandom(random_seed); + /* ALWAYS emit the random seed for possible debugging */ + HDfprintf(stderr, "Using writer random seed: %u\n", random_seed); + + /* Emit informational message */ + if(verbose) + HDfprintf(stderr, "Generating symbol names\n"); + + /* Generate dataset names */ + if(generate_symbols() < 0) + return -1; + + /* Emit informational message */ + if(verbose) + HDfprintf(stderr, "Opening skeleton file: %s\n", FILENAME); + + /* Open file skeleton */ + if((fid = open_skeleton(FILENAME, verbose, old)) < 0) { + HDfprintf(stderr, "Error opening skeleton file!\n"); + HDexit(1); + } /* end if */ + + /* Send a message to indicate "H5Fopen" is complete--releasing the file lock */ + h5_send_message(WRITER_MESSAGE, NULL, NULL); + + /* Emit informational message */ + if(verbose) + HDfprintf(stderr, "Removing records\n"); + + /* Remove records from datasets */ + if(remove_records(fid, verbose, (unsigned long)nshrinks, (unsigned long)flush_count) < 0) { + HDfprintf(stderr, "Error removing records from datasets!\n"); + HDexit(1); + } /* end if */ + + /* Emit informational message */ + if(verbose) + HDfprintf(stderr, "Releasing symbols\n"); + + /* Clean up the symbols */ + if(shutdown_symbols() < 0) { + HDfprintf(stderr, "Error releasing symbols!\n"); + HDexit(1); + } /* end if */ + + /* Emit informational message */ + if(verbose) + HDfprintf(stderr, "Closing objects\n"); + + /* Close objects opened */ + if(H5Fclose(fid) < 0) { + HDfprintf(stderr, "Error closing file!\n"); + HDexit(1); + } /* end if */ + + return 0; +} /* main() */ |