Squashed commit of the following:

commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94
Author: Kimmy Mu <kmu@hdfgroup.org>
Date:   Wed Jan 29 14:12:18 2020 -0600

    Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12

    * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1':
      pick up missing piece from merge
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      remove redundent definition
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
      missing prototype warning
      prototype issue
      Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
      Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop
      Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop
      Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop
      Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop
      Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop

commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c
Author: David Young <dyoung@hdfgroup.org>
Date:   Wed Jan 29 11:43:55 2020 -0600

    testpar/t_2Gio.c: Fix a typo that I think was introduced by a
            previous warnings PR.  An array element was assigned to
            itself---shape[2]Â =Â shape[2];---instead of being assigned to
            chunk[2].

    fortran/src/H5Pf.c: move conditional compilation controlled by
            H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

    fortran/src/H5match_types.c: put a variable's declaration under the same
            conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
            use.

    For now, skip compilation of some unused debug dump routines in the JNI.
    While I'm in the JNI, delete a set-but-unused variable.

    src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
            so that it's not declared but unused or vice versa.

    test/cache_common.h: add an #include in to get some symbols we need to
            avoid implicit declaration warnings.

    test/dsets.c: use a more conventional conditional-compilation syntax.

    test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
            variables before use.

    test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
            instead of `int **`.

    testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
            "equal to 0?" is the question not "is false?"  Repair some
            indentation while I'm here.

    testpar/testpar.h: repair misaligned line-continuation backslashes in a
            macro that probably should be a function so that we don't have
            to fiddle with the line continuation to begin with.

    tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
            enums.

    tools/test/perform/pio_engine.c: the compiler fusses if you cast a
            function call returning double directly to off_t.  It's ok if
            you cast a variable that's a double to off_t, however.  Write
            and use a new function, sqrto(), to avoid the cast warnings.

commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50
Author: David Young <dyoung@hdfgroup.org>
Date:   Wed Jan 29 10:47:30 2020 -0600

    Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.

    Reduce gratuitous casts---e.g., (size_t)1.

    Use the right format string for a pointer.

    In the H5C sanity checks, change a "size increase" variable from ssize_t
    (too narrow) to int64_t (wide enough).

    Parenthesize every appearance of `storage` in the macro
    `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an
    expression like &sc and it works properly.

    Disallow re-assignment of the `dset` parameter to H5D__chunk_init()
    because it helped assure me that it's safe to replace the repeating
    expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout.

    Replace lengthy expressions such as
    `&dset->shared->layout.storage.u.chunk` with `sc` throughout several
    functions in H5Dchunk.c ISTR that the compiler warned that `sc` was
    declared but unused in a couple of functions, and then I found that `sc`
    could be used in many places.  Maybe the disused `sc` appeared because a
    bunch of code was copied and pasted, I don't know.  Anyway, it's a lot
    tighter code now that I use `sc`.

    In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete()
    I actually expand `sc` and another temporary variable, `pline`,
    because they're used only in !defined(NDEBUG) code.  This squashes
    unused-variable warnings in the defined(NDEBUG) configuration.

    Don't drop the `volatile` qualification with a cast in
    tools/src/h5import/h5import.c.

commit 035bfa0769a4012881fc659b673bacf44d146537
Author: David Young <dyoung@hdfgroup.org>
Date:   Tue Jan 28 20:35:28 2020 -0600

    Reduce differences between my -Werror branch and `develop`:

    Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
    shadowed declaration warnings about index(3).

    Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
    H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.

11 files changed, 53 insertions, 53 deletions

diff --git a/test/big.c b/test/big.c
index 46acc5e..481da58 100644
--- a/test/big.c
+++ b/test/big.c
@@ -281,8 +281,7 @@ error:
  *      'name' in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 static int
 enough_room(hid_t fapl)
 {
@@ -323,7 +322,7 @@ done:
 
     return ret_value;
 }
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 
 /*-------------------------------------------------------------------------
diff --git a/test/cache_common.h b/test/cache_common.h
index 969cc2a..785dc21 100644
--- a/test/cache_common.h
+++ b/test/cache_common.h
@@ -25,6 +25,7 @@
 
 /* Include library header files */
 #include "H5ACprivate.h"
+#include "H5MFprivate.h"
 #include "H5Cpkg.h"
 #include "H5Fpkg.h"
 #include "H5Iprivate.h"
diff --git a/test/dsets.c b/test/dsets.c
index 8f89d82..5eb8763 100644
--- a/test/dsets.c
+++ b/test/dsets.c
@@ -2294,9 +2294,9 @@ H5_ATTR_UNUSED
 
     hsize_t     shuffle_size;       /* Size of dataset with shuffle filter */
 
-#if(defined H5_HAVE_FILTER_DEFLATE | defined H5_HAVE_FILTER_SZIP)
+#if defined(H5_HAVE_FILTER_DEFLATE) || defined(H5_HAVE_FILTER_SZIP)
     hsize_t     combo_size;         /* Size of dataset with multiple filters */
-#endif /* defined H5_HAVE_FILTER_DEFLATE | defined H5_HAVE_FILTER_SZIP */
+#endif /* defined(H5_HAVE_FILTER_DEFLATE) || defined(H5_HAVE_FILTER_SZIP) */
 
     /* test the H5Zget_filter_info function */
     if(test_get_filter_info() < 0) goto error;
diff --git a/test/dt_arith.c b/test/dt_arith.c
index 7e1adf5..8d04770 100644
--- a/test/dt_arith.c
+++ b/test/dt_arith.c
@@ -770,7 +770,7 @@ static int test_particular_fp_integer(void)
 
     /* Print errors */
     if(dst_c != SCHAR_MAX) {
-        double x;
+        double x = 0.;
         signed char   y;
 
         if(0 == fails_this_test++)
@@ -814,7 +814,7 @@ static int test_particular_fp_integer(void)
 
     /* Print errors */
     if(dst_i != fill_value) {
-        float x;
+        float x = 0.;
         int   y;
 
         if(0 == fails_this_test++)
@@ -2723,16 +2723,16 @@ my_isnan(dtype_t type, void *val)
     char s[256];
 
     if (FLT_FLOAT==type) {
-    float x;
+    float x = 0.;
     HDmemcpy(&x, val, sizeof(float));
     retval = (x!=x);
     } else if (FLT_DOUBLE==type) {
-    double x;
+    double x = 0.;
     HDmemcpy(&x, val, sizeof(double));
     retval = (x!=x);
 #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE && H5_SIZEOF_LONG_DOUBLE!=0
     } else if (FLT_LDOUBLE==type) {
-    long double x;
+    long double x = 0.;
     HDmemcpy(&x, val, sizeof(long double));
     retval = (x!=x);
 #endif
@@ -2746,18 +2746,18 @@ my_isnan(dtype_t type, void *val)
      */
     if (!retval) {
     if (FLT_FLOAT==type) {
-        float x;
+        float x = 0.;
 
         HDmemcpy(&x, val, sizeof(float));
         HDsnprintf(s, sizeof(s), "%g", (double)x);
     } else if (FLT_DOUBLE==type) {
-        double x;
+        double x = 0.;
 
         HDmemcpy(&x, val, sizeof(double));
         HDsnprintf(s, sizeof(s), "%g", x);
 #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE && H5_SIZEOF_LONG_DOUBLE!=0
     } else if (FLT_LDOUBLE==type) {
-        long double x;
+        long double x = 0.;
 
         HDmemcpy(&x, val, sizeof(long double));
         HDsnprintf(s, sizeof(s), "%Lg", x);
@@ -3197,7 +3197,7 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst)
             int        check_expo[2];
 
             if (FLT_FLOAT==dst_type) {
-                float x;
+                float x = 0.;
                 HDmemcpy(&x, &buf[j*dst_size], sizeof(float));
                 if (underflow &&
                         HDfabsf(x) <= FLT_MIN && HDfabsf(hw_f) <= FLT_MIN)
@@ -3208,7 +3208,7 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst)
                 check_mant[0] = HDfrexpf(x, check_expo+0);
                 check_mant[1] = HDfrexpf(hw_f, check_expo+1);
             } else if (FLT_DOUBLE==dst_type) {
-                double x;
+                double x = 0.;
                 HDmemcpy(&x, &buf[j*dst_size], sizeof(double));
                 if (underflow &&
                         HDfabs(x) <= DBL_MIN && HDfabs(hw_d) <= DBL_MIN)
@@ -3220,7 +3220,7 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst)
                 check_mant[1] = HDfrexp(hw_d, check_expo+1);
 #if H5_SIZEOF_LONG_DOUBLE !=0 && (H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE)
             } else {
-                long double x;
+                long double x = 0.;
                 HDmemcpy(&x, &buf[j*dst_size], sizeof(long double));
                 /* dst is largest float, no need to check underflow. */
                 check_mant[0] = (double)HDfrexpl(x, check_expo+0);
@@ -3265,16 +3265,16 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst)
             HDprintf(" %02x", saved[j*src_size+ENDIAN(src_size,k,sendian)]);
         HDprintf("%*s", (int)(3*MAX(0, (ssize_t)dst_size-(ssize_t)src_size)), "");
         if (FLT_FLOAT==src_type) {
-            float x;
+            float x = 0.;
             HDmemcpy(&x, &saved[j*src_size], sizeof(float));
             HDprintf(" %29.20e\n", (double)x);
         } else if (FLT_DOUBLE==src_type) {
-            double x;
+            double x = 0.;
             HDmemcpy(&x, &saved[j*src_size], sizeof(double));
             HDprintf(" %29.20e\n", x);
 #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE
         } else {
-            long double x;
+            long double x = 0.;
             HDmemcpy(&x, &saved[j*src_size], sizeof(long double));
             HDfprintf(stdout," %29.20Le\n", x);
 #endif
@@ -3285,16 +3285,16 @@ test_conv_flt_1 (const char *name, int run_test, hid_t src, hid_t dst)
             HDprintf(" %02x", buf[j*dst_size+ENDIAN(dst_size,k,dendian)]);
         HDprintf("%*s", (int)(3*MAX(0, (ssize_t)src_size-(ssize_t)dst_size)), "");
         if (FLT_FLOAT==dst_type) {
-            float x;
+            float x = 0.;
             HDmemcpy(&x, &buf[j*dst_size], sizeof(float));
             HDprintf(" %29.20e\n", (double)x);
         } else if (FLT_DOUBLE==dst_type) {
-            double x;
+            double x = 0.;
             HDmemcpy(&x, &buf[j*dst_size], sizeof(double));
             HDprintf(" %29.20e\n", x);
 #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE
         } else {
-            long double x;
+            long double x = 0.;
             HDmemcpy(&x, &buf[j*dst_size], sizeof(long double));
             HDfprintf(stdout," %29.20Le\n", x);
 #endif
diff --git a/test/error_test.c b/test/error_test.c
index 1de9065..d79dbec 100644
--- a/test/error_test.c
+++ b/test/error_test.c
@@ -326,8 +326,7 @@ long_desc_cb(unsigned H5_ATTR_UNUSED n, const H5E_error2_t *err_desc, void *clie
  *      'full_desc' in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 static herr_t
 test_long_desc(void)
 {
@@ -382,7 +381,7 @@ error:
 
     return -1;
 } /* end test_long_desc() */
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 
 /*-------------------------------------------------------------------------
diff --git a/test/fheap.c b/test/fheap.c
index 2cd2be3..c907e09 100644
--- a/test/fheap.c
+++ b/test/fheap.c
@@ -545,8 +545,7 @@ get_fill_size(const fheap_test_param_t *tparam)
  *      test_desc in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 static int
 begin_test(fheap_test_param_t *tparam, const char *base_desc,
     fheap_heap_ids_t *keep_ids, size_t *fill_size)
@@ -575,7 +574,7 @@ begin_test(fheap_test_param_t *tparam, const char *base_desc,
     /* Success */
     return(0);
 } /* end begin_test() */
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 
 /*-------------------------------------------------------------------------
diff --git a/test/file_image.c b/test/file_image.c
index ddbec80..dfb3ae8 100644
--- a/test/file_image.c
+++ b/test/file_image.c
@@ -678,8 +678,7 @@ error:
  *      'member_file_name' in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 static int
 test_get_file_image(const char * test_banner,
                     const int file_name_num,
@@ -946,7 +945,7 @@ test_get_file_image(const char * test_banner,
 error:
     return 1;
 } /* end test_get_file_image() */
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 
 /******************************************************************************
diff --git a/test/fillval.c b/test/fillval.c
index b3e2e88..019744a 100644
--- a/test/fillval.c
+++ b/test/fillval.c
@@ -762,6 +762,11 @@ test_rdwr_cases(hid_t file, hid_t dcpl, const char *dname, void *_fillval,
     comp_datatype    *buf_c=NULL;
     H5D_space_status_t  allocation;
 
+    fill_c.a = 0;
+    fill_c.x = 0;
+    fill_c.y = 0;
+    fill_c.z = 0;
+
     if(datatype == H5T_INTEGER) {
         fillval = *(int*)_fillval;
     }
diff --git a/test/h5test.c b/test/h5test.c
index bfc44b5..be974fe 100644
--- a/test/h5test.c
+++ b/test/h5test.c
@@ -195,8 +195,7 @@ h5_clean_files(const char *base_name[], hid_t fapl)
  *      sub_filename in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 void
 h5_delete_test_file(const char *base_name, hid_t fapl)
 {
@@ -246,7 +245,7 @@ h5_delete_test_file(const char *base_name, hid_t fapl)
 
     return;
 } /* end h5_delete_test_file() */
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 
 /*-------------------------------------------------------------------------
@@ -1357,8 +1356,7 @@ h5_dump_info_object(MPI_Info info)
  *      temp in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 h5_stat_size_t
 h5_get_file_size(const char *filename, hid_t fapl)
 {
@@ -1460,7 +1458,7 @@ h5_get_file_size(const char *filename, hid_t fapl)
 
     return(-1);
 } /* end get_file_size() */
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 /*
  * This routine is designed to provide equivalent functionality to 'printf'
diff --git a/test/trefer.c b/test/trefer.c
index fe237d7..32caf5e 100644
--- a/test/trefer.c
+++ b/test/trefer.c
@@ -2123,7 +2123,7 @@ test_reference_compat_conv(void)
     /* Allocate write & read buffers */
     wbuf_obj = (hobj_ref_t *)HDcalloc(sizeof(hobj_ref_t), SPACE1_DIM1);
     rbuf_obj = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1);
-    wbuf_reg = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1);
+    wbuf_reg = HDcalloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1);
     rbuf_reg = HDcalloc(sizeof(H5R_ref_t), SPACE1_DIM1);
 
     /* Create file */
diff --git a/test/vfd.c b/test/vfd.c
index 4fc61da..a960c3c 100644
--- a/test/vfd.c
+++ b/test/vfd.c
@@ -562,6 +562,7 @@ test_direct(void)
     size_t  mbound;
     size_t  fbsize;
     size_t  cbsize;
+    void *proto_points = NULL, *proto_check = NULL;
     int    *points = NULL, *check = NULL, *p1 = NULL, *p2 = NULL;
     int    wdata2[DSET2_DIM] = {11,12,13,14};
     int    rdata2[DSET2_DIM];
@@ -633,10 +634,12 @@ test_direct(void)
 
     /* Allocate aligned memory for data set 1. For data set 1, everything is aligned including
      * memory address, size of data, and file address. */
-    if(0 != HDposix_memalign(&points, (size_t)FBSIZE, (size_t)(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
+    if(0 != HDposix_memalign(&proto_points, (size_t)FBSIZE, (size_t)(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
         TEST_ERROR;
-    if(0 != HDposix_memalign(&check, (size_t)FBSIZE, (size_t)(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
+    points = proto_points;
+    if(0 != HDposix_memalign(&proto_check, (size_t)FBSIZE, (size_t)(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
         TEST_ERROR;
+    check = proto_check;
 
     /* Initialize the dset1 */
     p1 = points;
@@ -746,10 +749,10 @@ error:
         H5Fclose(file);
     } H5E_END_TRY;
 
-    if(points)
-        HDfree(points);
-    if(check)
-        HDfree(check);
+    if(proto_points)
+        HDfree(proto_points);
+    if(proto_check)
+        HDfree(proto_check);
 
     return -1;
 #endif /*H5_HAVE_DIRECT*/
@@ -776,8 +779,7 @@ error:
  *      'first_name' in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 static herr_t
 test_family_opens(char *fname, hid_t fa_pl)
 {
@@ -834,7 +836,7 @@ test_family_opens(char *fname, hid_t fa_pl)
 error:
     return -1;
 } /* end test_family_opens() */
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 
 /*-------------------------------------------------------------------------
@@ -1043,8 +1045,7 @@ error:
  *      'newname_individual', etc. in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 static herr_t
 test_family_compat(void)
 {
@@ -1128,7 +1129,7 @@ error:
 
     return -1;
 } /* end test_family_compat() */
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 
 /*-------------------------------------------------------------------------
@@ -1282,8 +1283,7 @@ error:
  *      'sf_name' in the code below, but early (4.4.7, at least) gcc only
  *      allows diagnostic pragmas to be toggled outside of functions.
  */
-#pragma GCC diagnostic push
-#pragma GCC diagnostic ignored "-Wformat-nonliteral"
+H5_GCC_DIAG_OFF(format-nonliteral)
 static herr_t
 test_multi_opens(char *fname)
 {
@@ -1301,7 +1301,7 @@ test_multi_opens(char *fname)
 
     return(fid >= 0 ? FAIL : SUCCEED);
 } /* end test_multi_opens() */
-#pragma GCC diagnostic pop
+H5_GCC_DIAG_ON(format-nonliteral)
 
 
 /*-------------------------------------------------------------------------