OESS-29 Update HD prefix mostly

1 files changed, 264 insertions, 264 deletions

diff --git a/testpar/t_bigio.c b/testpar/t_bigio.c
index 1d882b8..9ca077c 100644
--- a/testpar/t_bigio.c
+++ b/testpar/t_bigio.c
@@ -1,7 +1,7 @@
 
 #include "hdf5.h"
 #include "testphdf5.h"
-#include "H5Dprivate.h"	            /* For Chunk tests */
+#include "H5Dprivate.h"                /* For Chunk tests */
 
 /* FILENAME and filenames must have the same number of names */
 const char *FILENAME[2]={ "bigio_test.h5",
@@ -17,7 +17,7 @@ const char *FILENAME[2]={ "bigio_test.h5",
 #define MAINPROCESS     (!mpi_rank) /* define process 0 as main process */
 
 /* Constants definitions */
-#define RANK		2
+#define RANK        2
 
 #define IN_ORDER     1
 #define OUT_OF_ORDER 2
@@ -33,12 +33,12 @@ const char *FILENAME[2]={ "bigio_test.h5",
 
 #define HYPER 1
 #define POINT 2
-#define ALL 3 
+#define ALL 3
 
 /* Dataset data type.  Int's can be easily octo dumped. */
 typedef hsize_t B_DATATYPE;
 
-int facc_type = FACC_MPIO;		/*Test file access type */
+int facc_type = FACC_MPIO;        /*Test file access type */
 int dxfer_coll_type = DXFER_COLLECTIVE_IO;
 size_t bigcount = DXFER_BIGCOUNT;
 int nerrors = 0;
@@ -54,12 +54,12 @@ hid_t create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type);
 /*
  * Setup the coordinates for point selection.
  */
-static void 
+static void
 set_coords(hsize_t start[],
           hsize_t count[],
           hsize_t stride[],
           hsize_t block[],
-          size_t num_points, 
+          size_t num_points,
           hsize_t coords[],
           int order)
 {
@@ -99,10 +99,10 @@ fill_datasets(hsize_t start[], hsize_t block[], B_DATATYPE * dataset)
 
     /* put some trivial data in the data_array */
     for (i=0; i < block[0]; i++){
-	for (j=0; j < block[1]; j++){
-	    *dataptr = (B_DATATYPE)((i+start[0])*100 + (j+start[1]+1));
-	    dataptr++;
-	}
+    for (j=0; j < block[1]; j++){
+        *dataptr = (B_DATATYPE)((i+start[0])*100 + (j+start[1]+1));
+        dataptr++;
+    }
     }
 }
 
@@ -113,7 +113,7 @@ void point_set(hsize_t start[],
                hsize_t count[],
                hsize_t stride[],
                hsize_t block[],
-               size_t num_points, 
+               size_t num_points,
                hsize_t coords[],
                int order)
 {
@@ -143,13 +143,13 @@ void point_set(hsize_t start[],
                     }
 
     if(VERBOSE_MED) {
-        printf("start[]=(%lu, %lu), count[]=(%lu, %lu), stride[]=(%lu, %lu), block[]=(%lu, %lu), total datapoints=%lu\n",
+        HDprintf("start[]=(%lu, %lu), count[]=(%lu, %lu), stride[]=(%lu, %lu), block[]=(%lu, %lu), total datapoints=%lu\n",
                (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
                (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
                (unsigned long)(block[0] * block[1] * count[0] * count[1]));
         k = 0;
         for(i = 0; i < num_points ; i++) {
-            printf("(%d, %d)\n", (int)coords[k], (int)coords[k + 1]);
+            HDprintf("(%d, %d)\n", (int)coords[k], (int)coords[k + 1]);
             k += 2;
         }
     }
@@ -165,19 +165,19 @@ dataset_print(hsize_t start[], hsize_t block[], B_DATATYPE * dataset)
     hsize_t i, j;
 
     /* print the column heading */
-    printf("%-8s", "Cols:");
+    HDprintf("%-8s", "Cols:");
     for (j=0; j < block[1]; j++){
-	printf("%3lu ", (unsigned long)(start[1]+j));
+        HDprintf("%3lu ", (unsigned long)(start[1]+j));
     }
-    printf("\n");
+    HDprintf("\n");
 
     /* print the slab data */
     for (i=0; i < block[0]; i++){
-	printf("Row %2lu: ", (unsigned long)(i+start[0]));
-	for (j=0; j < block[1]; j++){
-	    printf("%llu ", *dataptr++);
-	}
-	printf("\n");
+    HDprintf("Row %2lu: ", (unsigned long)(i+start[0]));
+    for (j=0; j < block[1]; j++){
+        HDprintf("%llu ", *dataptr++);
+    }
+    HDprintf("\n");
     }
 }
 
@@ -193,90 +193,90 @@ verify_data(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[],
 
     /* print it if VERBOSE_MED */
     if(VERBOSE_MED) {
-	printf("verify_data dumping:::\n");
-	printf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
-	    (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
-	    (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
-	printf("original values:\n");
-	dataset_print(start, block, original);
-	printf("compared values:\n");
-	dataset_print(start, block, dataset);
+        HDprintf("verify_data dumping:::\n");
+        HDprintf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
+            (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+            (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
+        HDprintf("original values:\n");
+        dataset_print(start, block, original);
+        HDprintf("compared values:\n");
+        dataset_print(start, block, dataset);
     }
 
     vrfyerrs = 0;
     for (i=0; i < block[0]; i++){
-	for (j=0; j < block[1]; j++){
-	    if(*dataset != *original){
-		if(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
-		    printf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %llu, got %llu\n",
+    for (j=0; j < block[1]; j++){
+        if(*dataset != *original){
+        if(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
+            HDprintf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %llu, got %llu\n",
                            (unsigned long)i, (unsigned long)j,
                            (unsigned long)(i+start[0]), (unsigned long)(j+start[1]),
                            *(original), *(dataset));
-		}
-		dataset++;
-		original++;
-	    }
-	}
+        }
+        dataset++;
+        original++;
+        }
+    }
     }
     if(vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
-	printf("[more errors ...]\n");
+        HDprintf("[more errors ...]\n");
     if(vrfyerrs)
-	printf("%d errors found in verify_data\n", vrfyerrs);
+        HDprintf("%d errors found in verify_data\n", vrfyerrs);
     return(vrfyerrs);
 }
 
 /* Set up the selection */
 static void
 ccslab_set(int mpi_rank,
-	   int mpi_size,
-	   hsize_t start[],
-	   hsize_t count[],
-	   hsize_t stride[],
-	   hsize_t block[],
-	   int mode)
+    int mpi_size,
+    hsize_t start[],
+    hsize_t count[],
+    hsize_t stride[],
+    hsize_t block[],
+    int mode)
 {
 
     switch (mode){
 
     case BYROW_CONT:
-	/* Each process takes a slabs of rows. */
-	block[0]  =  1;
-	block[1]  =  1;
-	stride[0] =  1;
-	stride[1] =  1;
-	count[0]  =  space_dim1;
-	count[1]  =  space_dim2;
-	start[0]  =  mpi_rank*count[0];
-	start[1]  =  0;
-
-	break;
+    /* Each process takes a slabs of rows. */
+    block[0]  =  1;
+    block[1]  =  1;
+    stride[0] =  1;
+    stride[1] =  1;
+    count[0]  =  space_dim1;
+    count[1]  =  space_dim2;
+    start[0]  =  mpi_rank*count[0];
+    start[1]  =  0;
+
+    break;
 
     case BYROW_DISCONT:
-	/* Each process takes several disjoint blocks. */
-	block[0]  =  1;
-	block[1]  =  1;
+    /* Each process takes several disjoint blocks. */
+    block[0]  =  1;
+    block[1]  =  1;
         stride[0] =  3;
         stride[1] =  3;
         count[0]  =  space_dim1/(stride[0]*block[0]);
         count[1]  =  (space_dim2)/(stride[1]*block[1]);
-	start[0]  =  space_dim1*mpi_rank;
-	start[1]  =  0;
+    start[0]  =  space_dim1*mpi_rank;
+    start[1]  =  0;
 
-	break;
+    break;
 
     case BYROW_SELECTNONE:
-	/* Each process takes a slabs of rows, there are
+    /* Each process takes a slabs of rows, there are
            no selections for the last process. */
-	block[0]  =  1;
-	block[1]  =  1;
-	stride[0] =  1;
-	stride[1] =  1;
-	count[0]  =  ((mpi_rank >= MAX(1,(mpi_size-2)))?0:space_dim1);
-	count[1]  =  space_dim2;
-	start[0]  =  mpi_rank*count[0];
-	start[1]  =  0;
+    block[0]  =  1;
+    block[1]  =  1;
+    stride[0] =  1;
+    stride[1] =  1;
+    count[0]  =  ((mpi_rank >= MAX(1,(mpi_size-2)))?0:space_dim1);
+    count[1]  =  space_dim2;
+    start[0]  =  mpi_rank*count[0];
+    start[1]  =  0;
 
-	break;
+    break;
 
     case BYROW_SELECTUNBALANCE:
       /* The first one-third of the number of processes only
@@ -284,14 +284,14 @@ ccslab_set(int mpi_rank,
          half of the domain. */
 
         block[0]  = 1;
-	count[0]  = 2;
+    count[0]  = 2;
         stride[0] = space_dim1*mpi_size/4+1;
         block[1]  = space_dim2;
         count[1]  = 1;
         start[1]  = 0;
         stride[1] = 1;
-	if((mpi_rank *3)<(mpi_size*2)) start[0]  = mpi_rank;
-	else start[0] = 1 + space_dim1*mpi_size/2 + (mpi_rank-2*mpi_size/3);
+    if((mpi_rank *3)<(mpi_size*2)) start[0]  = mpi_rank;
+    else start[0] = 1 + space_dim1*mpi_size/2 + (mpi_rank-2*mpi_size/3);
         break;
 
     case BYROW_SELECTINCHUNK:
@@ -299,33 +299,33 @@ ccslab_set(int mpi_rank,
 
         block[0] = 1;
         count[0] = 1;
-	start[0] = mpi_rank*space_dim1;
+    start[0] = mpi_rank*space_dim1;
         stride[0]= 1;
-	block[1] = space_dim2;
-	count[1] = 1;
-	stride[1]= 1;
-	start[1] = 0;
+    block[1] = space_dim2;
+    count[1] = 1;
+    stride[1]= 1;
+    start[1] = 0;
 
         break;
 
     default:
-	/* Unknown mode.  Set it to cover the whole dataset. */
-	block[0]  = space_dim1*mpi_size;
-	block[1]  = space_dim2;
-	stride[0] = block[0];
-	stride[1] = block[1];
-	count[0]  = 1;
-	count[1]  = 1;
-	start[0]  = 0;
-	start[1]  = 0;
-
-	break;
+    /* Unknown mode.  Set it to cover the whole dataset. */
+    block[0]  = space_dim1*mpi_size;
+    block[1]  = space_dim2;
+    stride[0] = block[0];
+    stride[1] = block[1];
+    count[0]  = 1;
+    count[1]  = 1;
+    start[0]  = 0;
+    start[1]  = 0;
+
+    break;
     }
     if (VERBOSE_MED){
-      printf("start[]=(%lu,%lu), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total datapoints=%lu\n",
-	(unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
-	(unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
-	(unsigned long)(block[0]*block[1]*count[0]*count[1]));
+      HDprintf("start[]=(%lu,%lu), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total datapoints=%lu\n",
+    (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+    (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
+    (unsigned long)(block[0]*block[1]*count[0]*count[1]));
     }
 }
 
@@ -336,10 +336,10 @@ ccslab_set(int mpi_rank,
  */
 static void
 ccdataset_fill(hsize_t start[],
-	       hsize_t stride[],
-	       hsize_t count[],
-	       hsize_t block[],
-	       DATATYPE * dataset,
+        hsize_t stride[],
+        hsize_t count[],
+        hsize_t block[],
+        DATATYPE * dataset,
                int mem_selection)
 {
     DATATYPE *dataptr = dataset;
@@ -377,28 +377,28 @@ ccdataset_fill(hsize_t start[],
  */
 static void
 ccdataset_print(hsize_t start[],
-		hsize_t block[],
-		DATATYPE * dataset)
+        hsize_t block[],
+        DATATYPE * dataset)
 
 {
     DATATYPE *dataptr = dataset;
     hsize_t i, j;
 
     /* print the column heading */
-    printf("Print only the first block of the dataset\n");
-    printf("%-8s", "Cols:");
+    HDprintf("Print only the first block of the dataset\n");
+    HDprintf("%-8s", "Cols:");
     for (j=0; j < block[1]; j++){
-	printf("%3lu ", (unsigned long)(start[1]+j));
+        HDprintf("%3lu ", (unsigned long)(start[1]+j));
     }
-    printf("\n");
+    HDprintf("\n");
 
     /* print the slab data */
     for (i=0; i < block[0]; i++){
-	printf("Row %2lu: ", (unsigned long)(i+start[0]));
-	for (j=0; j < block[1]; j++){
-	    printf("%03d ", *dataptr++);
-	}
-	printf("\n");
+        HDprintf("Row %2lu: ", (unsigned long)(i+start[0]));
+        for (j=0; j < block[1]; j++){
+            HDprintf("%03d ", *dataptr++);
+        }
+        HDprintf("\n");
     }
 }
 
@@ -407,11 +407,11 @@ ccdataset_print(hsize_t start[],
  */
 static int
 ccdataset_vrfy(hsize_t start[],
-	       hsize_t count[],
-	       hsize_t stride[],
-	       hsize_t block[],
-	       DATATYPE *dataset,
-	       DATATYPE *original,
+        hsize_t count[],
+        hsize_t stride[],
+        hsize_t block[],
+        DATATYPE *dataset,
+        DATATYPE *original,
                int mem_selection)
 {
     hsize_t i, j,k1,k2,k=0;
@@ -420,14 +420,14 @@ ccdataset_vrfy(hsize_t start[],
 
     /* print it if VERBOSE_MED */
     if (VERBOSE_MED) {
-	printf("dataset_vrfy dumping:::\n");
-	printf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
-	    (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
-	    (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
-	printf("original values:\n");
-	ccdataset_print(start, block, original);
-	printf("compared values:\n");
-	ccdataset_print(start, block, dataset);
+        HDprintf("dataset_vrfy dumping:::\n");
+        HDprintf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
+            (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+            (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
+        HDprintf("original values:\n");
+        ccdataset_print(start, block, original);
+        HDprintf("compared values:\n");
+        ccdataset_print(start, block, dataset);
     }
 
     vrfyerrs = 0;
@@ -449,7 +449,7 @@ ccdataset_vrfy(hsize_t start[],
                     }
                     if (*dataptr != *oriptr){
                         if (vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
-                            printf("Dataset Verify failed at [%lu][%lu]: expect %d, got %d\n",
+                            HDprintf("Dataset Verify failed at [%lu][%lu]: expect %d, got %d\n",
                                    (unsigned long)i, (unsigned long)j,
                                    *(oriptr), *(dataptr));
                         }
@@ -459,9 +459,9 @@ ccdataset_vrfy(hsize_t start[],
         }
     }
     if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
-	printf("[more errors ...]\n");
+        HDprintf("[more errors ...]\n");
     if (vrfyerrs)
-	printf("%d errors found in ccdataset_vrfy\n", vrfyerrs);
+        HDprintf("%d errors found in ccdataset_vrfy\n", vrfyerrs);
     return(vrfyerrs);
 }
 
@@ -478,28 +478,28 @@ static void
 dataset_big_write(void)
 {
 
-    hid_t xfer_plist;		/* Dataset transfer properties list */
-    hid_t sid;   		/* Dataspace ID */
-    hid_t file_dataspace;	/* File dataspace ID */
-    hid_t mem_dataspace;	/* memory dataspace ID */
+    hid_t xfer_plist;        /* Dataset transfer properties list */
+    hid_t sid;           /* Dataspace ID */
+    hid_t file_dataspace;    /* File dataspace ID */
+    hid_t mem_dataspace;    /* memory dataspace ID */
     hid_t dataset;
-    hid_t datatype;		/* Datatype ID */
-    hsize_t dims[RANK];   	/* dataset dim sizes */
-    hsize_t start[RANK];			/* for hyperslab setting */
-    hsize_t count[RANK], stride[RANK];		/* for hyperslab setting */
-    hsize_t block[RANK];			/* for hyperslab setting */
+    hid_t datatype;        /* Datatype ID */
+    hsize_t dims[RANK];       /* dataset dim sizes */
+    hsize_t start[RANK];            /* for hyperslab setting */
+    hsize_t count[RANK], stride[RANK];        /* for hyperslab setting */
+    hsize_t block[RANK];            /* for hyperslab setting */
     hsize_t *coords = NULL;
     int i;
-    herr_t ret;         	/* Generic return value */
+    herr_t ret;             /* Generic return value */
     hid_t fid;                  /* HDF5 file ID */
-    hid_t acc_tpl;		/* File access templates */
+    hid_t acc_tpl;        /* File access templates */
     hsize_t h;
     size_t num_points;
     B_DATATYPE * wdata;
 
 
     /* allocate memory for data buffer */
-    wdata = (B_DATATYPE *)malloc(bigcount*sizeof(B_DATATYPE));
+    wdata = (B_DATATYPE *)HDmalloc(bigcount*sizeof(B_DATATYPE));
     VRFY((wdata != NULL), "wdata malloc succeeded");
 
     /* setup file access template */
@@ -552,8 +552,8 @@ dataset_big_write(void)
     fill_datasets(start, block, wdata);
     MESG("data_array initialized");
     if(VERBOSE_MED){
-	MESG("data_array created");
-	dataset_print(start, block, wdata);
+        MESG("data_array created");
+        dataset_print(start, block, wdata);
     }
 
     /* set up the collective transfer properties list */
@@ -580,7 +580,7 @@ dataset_big_write(void)
 
 
     /* Each process takes a slabs of cols. */
-    if (mpi_rank == 0) 
+    if (mpi_rank == 0)
         HDprintf("\nTesting Dataset2 write by COL\n");
     /* Create a large dataset */
     dims[0] = bigcount;
@@ -615,8 +615,8 @@ dataset_big_write(void)
     fill_datasets(start, block, wdata);
     MESG("data_array initialized");
     if(VERBOSE_MED){
-	MESG("data_array created");
-	dataset_print(start, block, wdata);
+        MESG("data_array created");
+        dataset_print(start, block, wdata);
     }
 
     /* set up the collective transfer properties list */
@@ -690,7 +690,7 @@ dataset_big_write(void)
     fill_datasets(start, dims, wdata);
     MESG("data_array initialized");
     if(VERBOSE_MED){
-	MESG("data_array created");
+        MESG("data_array created");
     }
 
     ret = H5Dwrite(dataset, H5T_NATIVE_LLONG, mem_dataspace, file_dataspace,
@@ -729,7 +729,7 @@ dataset_big_write(void)
 
     num_points = bigcount;
 
-    coords = (hsize_t *)malloc(num_points * RANK * sizeof(hsize_t));
+    coords = (hsize_t *)HDmalloc(num_points * RANK * sizeof(hsize_t));
     VRFY((coords != NULL), "coords malloc succeeded");
 
     set_coords (start, count, stride, block, num_points, coords, IN_ORDER);
@@ -744,8 +744,8 @@ dataset_big_write(void)
     fill_datasets(start, block, wdata);
     MESG("data_array initialized");
     if(VERBOSE_MED){
-	MESG("data_array created");
-	dataset_print(start, block, wdata);
+        MESG("data_array created");
+        dataset_print(start, block, wdata);
     }
 
     /* create a memory dataspace */
@@ -778,7 +778,7 @@ dataset_big_write(void)
     ret = H5Dclose(dataset);
     VRFY((ret >= 0), "H5Dclose1 succeeded");
 
-    free(wdata);
+    HDfree(wdata);
     H5Fclose(fid);
 }
 
@@ -795,30 +795,30 @@ static void
 dataset_big_read(void)
 {
     hid_t fid;                  /* HDF5 file ID */
-    hid_t acc_tpl;		/* File access templates */
-    hid_t xfer_plist;		/* Dataset transfer properties list */
-    hid_t file_dataspace;	/* File dataspace ID */
-    hid_t mem_dataspace;	/* memory dataspace ID */
+    hid_t acc_tpl;        /* File access templates */
+    hid_t xfer_plist;        /* Dataset transfer properties list */
+    hid_t file_dataspace;    /* File dataspace ID */
+    hid_t mem_dataspace;    /* memory dataspace ID */
     hid_t dataset;
-    B_DATATYPE *rdata = NULL;	/* data buffer */
-    B_DATATYPE *wdata = NULL; 	/* expected data buffer */
-    hsize_t dims[RANK];   	/* dataset dim sizes */
-    hsize_t start[RANK];			/* for hyperslab setting */
-    hsize_t count[RANK], stride[RANK];		/* for hyperslab setting */
-    hsize_t block[RANK];			/* for hyperslab setting */
+    B_DATATYPE *rdata = NULL;    /* data buffer */
+    B_DATATYPE *wdata = NULL;     /* expected data buffer */
+    hsize_t dims[RANK];       /* dataset dim sizes */
+    hsize_t start[RANK];            /* for hyperslab setting */
+    hsize_t count[RANK], stride[RANK];        /* for hyperslab setting */
+    hsize_t block[RANK];            /* for hyperslab setting */
     int i,j,k;
     hsize_t h;
     size_t num_points;
     hsize_t *coords = NULL;
-    herr_t ret;         	/* Generic return value */
+    herr_t ret;             /* Generic return value */
 
     /* allocate memory for data buffer */
-    rdata = (B_DATATYPE *)malloc(bigcount*sizeof(B_DATATYPE));
+    rdata = (B_DATATYPE *)HDmalloc(bigcount*sizeof(B_DATATYPE));
     VRFY((rdata != NULL), "rdata malloc succeeded");
-    wdata = (B_DATATYPE *)malloc(bigcount*sizeof(B_DATATYPE));
+    wdata = (B_DATATYPE *)HDmalloc(bigcount*sizeof(B_DATATYPE));
     VRFY((wdata != NULL), "wdata malloc succeeded");
 
-    memset(rdata, 0, bigcount*sizeof(B_DATATYPE));
+    HDmemset(rdata, 0, bigcount*sizeof(B_DATATYPE));
 
     /* setup file access template */
     acc_tpl = H5Pcreate (H5P_FILE_ACCESS);
@@ -865,7 +865,7 @@ dataset_big_read(void)
     fill_datasets(start, block, wdata);
     MESG("data_array initialized");
     if(VERBOSE_MED){
-	MESG("data_array created");
+    MESG("data_array created");
     }
 
     /* set up the collective transfer properties list */
@@ -885,7 +885,7 @@ dataset_big_read(void)
 
     /* verify the read data with original expected data */
     ret = verify_data(start, count, stride, block, rdata, wdata);
-    if(ret) {fprintf(stderr, "verify failed\n"); exit(1);}
+    if(ret) {HDfprintf(stderr, "verify failed\n"); exit(1);}
 
     /* release all temporary handles. */
     H5Sclose(file_dataspace);
@@ -897,7 +897,7 @@ dataset_big_read(void)
 
     if (mpi_rank == 0)
         HDprintf("\nRead Testing Dataset2 by ROW\n");
-    memset(rdata, 0, bigcount*sizeof(B_DATATYPE));
+    HDmemset(rdata, 0, bigcount*sizeof(B_DATATYPE));
     dataset = H5Dopen2(fid, DATASET2, H5P_DEFAULT);
     VRFY((dataset >= 0), "H5Dopen2 succeeded");
 
@@ -927,7 +927,7 @@ dataset_big_read(void)
     fill_datasets(start, block, wdata);
     MESG("data_array initialized");
     if(VERBOSE_MED){
-	MESG("data_array created");
+        MESG("data_array created");
     }
 
     /* set up the collective transfer properties list */
@@ -947,7 +947,7 @@ dataset_big_read(void)
 
     /* verify the read data with original expected data */
     ret = verify_data(start, count, stride, block, rdata, wdata);
-    if(ret) {fprintf(stderr, "verify failed\n"); exit(1);}
+    if(ret) {HDfprintf(stderr, "verify failed\n"); exit(1);}
 
     /* release all temporary handles. */
     H5Sclose(file_dataspace);
@@ -958,7 +958,7 @@ dataset_big_read(void)
 
     if (mpi_rank == 0)
         HDprintf("\nRead Testing Dataset3 read select ALL proc 0, NONE others\n");
-    memset(rdata, 0, bigcount*sizeof(B_DATATYPE));
+    HDmemset(rdata, 0, bigcount*sizeof(B_DATATYPE));
     dataset = H5Dopen2(fid, DATASET3, H5P_DEFAULT);
     VRFY((dataset >= 0), "H5Dopen2 succeeded");
 
@@ -989,7 +989,7 @@ dataset_big_read(void)
     fill_datasets(start, dims, wdata);
     MESG("data_array initialized");
     if(VERBOSE_MED){
-	MESG("data_array created");
+        MESG("data_array created");
     }
 
     /* set up the collective transfer properties list */
@@ -1010,7 +1010,7 @@ dataset_big_read(void)
     if(mpi_rank == 0) {
         /* verify the read data with original expected data */
         ret = verify_data(start, count, stride, block, rdata, wdata);
-        if(ret) {fprintf(stderr, "verify failed\n"); exit(1);}
+        if(ret) {HDfprintf(stderr, "verify failed\n"); exit(1);}
     }
 
     /* release all temporary handles. */
@@ -1040,13 +1040,13 @@ dataset_big_read(void)
     fill_datasets(start, block, wdata);
     MESG("data_array initialized");
     if(VERBOSE_MED){
-	MESG("data_array created");
-	dataset_print(start, block, wdata);
+        MESG("data_array created");
+        dataset_print(start, block, wdata);
     }
 
     num_points = bigcount;
 
-    coords = (hsize_t *)malloc(num_points * RANK * sizeof(hsize_t));
+    coords = (hsize_t *)HDmalloc(num_points * RANK * sizeof(hsize_t));
     VRFY((coords != NULL), "coords malloc succeeded");
 
     set_coords (start, count, stride, block, num_points, coords, IN_ORDER);
@@ -1056,7 +1056,7 @@ dataset_big_read(void)
     ret = H5Sselect_elements(file_dataspace, H5S_SELECT_SET, num_points, coords);
     VRFY((ret >= 0), "H5Sselect_elements succeeded");
 
-    if(coords) free(coords);
+    if(coords) HDfree(coords);
 
     /* create a memory dataspace */
     /* Warning: H5Screate_simple requires an array of hsize_t elements
@@ -1082,7 +1082,7 @@ dataset_big_read(void)
     VRFY((ret >= 0), "H5Dread dataset1 succeeded");
 
     ret = verify_data(start, count, stride, block, rdata, wdata);
-    if(ret) {fprintf(stderr, "verify failed\n"); exit(1);}
+    if(ret) {HDfprintf(stderr, "verify failed\n"); exit(1);}
 
     /* release all temporary handles. */
     H5Sclose(file_dataspace);
@@ -1091,8 +1091,8 @@ dataset_big_read(void)
     ret = H5Dclose(dataset);
     VRFY((ret >= 0), "H5Dclose1 succeeded");
 
-    free(wdata);
-    free(rdata);
+    HDfree(wdata);
+    HDfree(rdata);
 
     wdata = NULL;
     rdata = NULL;
@@ -1115,8 +1115,8 @@ dataset_big_read(void)
     H5Fclose(fid);
 
     /* release data buffers */
-    if(rdata) free(rdata);
-    if(wdata) free(wdata);
+    if(rdata) HDfree(rdata);
+    if(wdata) HDfree(wdata);
 
 } /* dataset_large_readAll */
 
@@ -1129,7 +1129,7 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
 {
     hid_t ret_pl = -1;
     herr_t ret;                 /* generic return value */
-    int mpi_rank;		/* mpi variables */
+    int mpi_rank;        /* mpi variables */
 
     /* need the rank for error checking macros */
     MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
@@ -1138,36 +1138,36 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
     VRFY((ret_pl >= 0), "H5P_FILE_ACCESS");
 
     if (l_facc_type == FACC_DEFAULT)
-	return (ret_pl);
+    return (ret_pl);
 
     if (l_facc_type == FACC_MPIO){
-	/* set Parallel access with communicator */
-	ret = H5Pset_fapl_mpio(ret_pl, comm, info);
-	VRFY((ret >= 0), "");
+    /* set Parallel access with communicator */
+    ret = H5Pset_fapl_mpio(ret_pl, comm, info);
+    VRFY((ret >= 0), "");
         ret = H5Pset_all_coll_metadata_ops(ret_pl, TRUE);
-	VRFY((ret >= 0), "");
+    VRFY((ret >= 0), "");
         ret = H5Pset_coll_metadata_write(ret_pl, TRUE);
-	VRFY((ret >= 0), "");
-	return(ret_pl);
+    VRFY((ret >= 0), "");
+    return(ret_pl);
     }
 
     if (l_facc_type == (FACC_MPIO | FACC_SPLIT)){
-	hid_t mpio_pl;
-
-	mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
-	VRFY((mpio_pl >= 0), "");
-	/* set Parallel access with communicator */
-	ret = H5Pset_fapl_mpio(mpio_pl, comm, info);
-	VRFY((ret >= 0), "");
-
-	/* setup file access template */
-	ret_pl = H5Pcreate (H5P_FILE_ACCESS);
-	VRFY((ret_pl >= 0), "");
-	/* set Parallel access with communicator */
-	ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl);
-	VRFY((ret >= 0), "H5Pset_fapl_split succeeded");
-	H5Pclose(mpio_pl);
-	return(ret_pl);
+    hid_t mpio_pl;
+
+    mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
+    VRFY((mpio_pl >= 0), "");
+    /* set Parallel access with communicator */
+    ret = H5Pset_fapl_mpio(mpio_pl, comm, info);
+    VRFY((ret >= 0), "");
+
+    /* setup file access template */
+    ret_pl = H5Pcreate (H5P_FILE_ACCESS);
+    VRFY((ret_pl >= 0), "");
+    /* set Parallel access with communicator */
+    ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl);
+    VRFY((ret >= 0), "H5Pset_fapl_split succeeded");
+    H5Pclose(mpio_pl);
+    return(ret_pl);
     }
 
     /* unknown file access types */
@@ -1176,17 +1176,17 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
 
 
 /*-------------------------------------------------------------------------
- * Function:	coll_chunk1
+ * Function:    coll_chunk1
  *
- * Purpose:	Wrapper to test the collective chunk IO for regular JOINT
+ * Purpose:    Wrapper to test the collective chunk IO for regular JOINT
                 selection with a single chunk
  *
- * Return:	Success:	0
+ * Return:    Success:    0
  *
- *		Failure:	-1
+ *        Failure:    -1
  *
- * Programmer:	Unknown
- *		July 12th, 2004
+ * Programmer:    Unknown
+ *        July 12th, 2004
  *
  * Modifications:
  *
@@ -1215,7 +1215,7 @@ coll_chunk1(void)
 {
     const char *filename = FILENAME[0];
     if (mpi_rank == 0)
-       printf("coll_chunk1\n");
+        HDprintf("coll_chunk1\n");
 
     coll_chunktest(filename, 1, BYROW_CONT, API_NONE, HYPER, HYPER, OUT_OF_ORDER);
     coll_chunktest(filename, 1, BYROW_CONT, API_NONE, HYPER, POINT, OUT_OF_ORDER);
@@ -1230,17 +1230,17 @@ coll_chunk1(void)
 
 
 /*-------------------------------------------------------------------------
- * Function:	coll_chunk2
+ * Function:    coll_chunk2
  *
- * Purpose:	Wrapper to test the collective chunk IO for regular DISJOINT
+ * Purpose:    Wrapper to test the collective chunk IO for regular DISJOINT
                 selection with a single chunk
  *
- * Return:	Success:	0
+ * Return:    Success:    0
  *
- *		Failure:	-1
+ *        Failure:    -1
  *
- * Programmer:	Unknown
- *		July 12th, 2004
+ * Programmer:    Unknown
+ *        July 12th, 2004
  *
  * Modifications:
  *
@@ -1269,7 +1269,7 @@ coll_chunk2(void)
 {
     const char *filename = FILENAME[0];
     if (mpi_rank == 0)
-      printf("coll_chunk2\n");
+        HDprintf("coll_chunk2\n");
 
     coll_chunktest(filename, 1, BYROW_DISCONT, API_NONE, HYPER, HYPER, OUT_OF_ORDER);
     coll_chunktest(filename, 1, BYROW_DISCONT, API_NONE, HYPER, POINT, OUT_OF_ORDER);
@@ -1284,17 +1284,17 @@ coll_chunk2(void)
 
 
 /*-------------------------------------------------------------------------
- * Function:	coll_chunk3
+ * Function:    coll_chunk3
  *
- * Purpose:	Wrapper to test the collective chunk IO for regular JOINT
+ * Purpose:    Wrapper to test the collective chunk IO for regular JOINT
                 selection with at least number of 2*mpi_size chunks
  *
- * Return:	Success:	0
+ * Return:    Success:    0
  *
- *		Failure:	-1
+ *        Failure:    -1
  *
- * Programmer:	Unknown
- *		July 12th, 2004
+ * Programmer:    Unknown
+ *        July 12th, 2004
  *
  * Modifications:
  *
@@ -1324,7 +1324,7 @@ coll_chunk3(void)
 {
     const char *filename = FILENAME[0];
     if (mpi_rank == 0)
-        printf("coll_chunk3\n");
+        HDprintf("coll_chunk3\n");
 
     coll_chunktest(filename, mpi_size, BYROW_CONT, API_NONE, HYPER, HYPER, OUT_OF_ORDER);
     coll_chunktest(filename, mpi_size, BYROW_CONT, API_NONE, HYPER, POINT, OUT_OF_ORDER);
@@ -1341,17 +1341,17 @@ coll_chunk3(void)
 //-------------------------------------------------------------------------
 // Borrowed/Modified (slightly) from t_coll_chunk.c
 /*-------------------------------------------------------------------------
- * Function:	coll_chunktest
+ * Function:    coll_chunktest
  *
  * Purpose:     The real testing routine for regular selection of collective
                 chunking storage
                 testing both write and read,
-		If anything fails, it may be read or write. There is no
-		separation test between read and write.
+        If anything fails, it may be read or write. There is no
+        separation test between read and write.
  *
- * Return:	Success:	0
+ * Return:    Success:    0
  *
- *		Failure:	-1
+ *        Failure:    -1
  *
  * Modifications:
  *   Remove invalid temporary property checkings for API_LINK_HARD and
@@ -1359,8 +1359,8 @@ coll_chunk3(void)
  * Programmer: Jonathan Kim
  * Date: 2012-10-10
  *
- * Programmer:	Unknown
- *		July 12th, 2004
+ * Programmer:    Unknown
+ *        July 12th, 2004
  *
  * Modifications:
  *
@@ -1369,14 +1369,14 @@ coll_chunk3(void)
 
 static void
 coll_chunktest(const char* filename,
-	       int chunk_factor,
-	       int select_factor,
+        int chunk_factor,
+        int select_factor,
                int api_option,
                int file_selection,
                int mem_selection,
                int mode)
 {
-  hid_t	   file, dataset, file_dataspace, mem_dataspace;
+  hid_t       file, dataset, file_dataspace, mem_dataspace;
   hid_t    acc_plist,xfer_plist,crp_plist;
 
   hsize_t  dims[RANK], chunk_dims[RANK];
@@ -1524,41 +1524,41 @@ coll_chunktest(const char* filename,
   }
 
   switch(api_option){
-	case API_LINK_HARD:
-	   status = H5Pset_dxpl_mpio_chunk_opt(xfer_plist,H5FD_MPIO_CHUNK_ONE_IO);
+    case API_LINK_HARD:
+    status = H5Pset_dxpl_mpio_chunk_opt(xfer_plist,H5FD_MPIO_CHUNK_ONE_IO);
            VRFY((status>= 0),"collective chunk optimization succeeded");
            break;
 
-	case API_MULTI_HARD:
-	   status = H5Pset_dxpl_mpio_chunk_opt(xfer_plist,H5FD_MPIO_CHUNK_MULTI_IO);
-	   VRFY((status>= 0),"collective chunk optimization succeeded ");
+    case API_MULTI_HARD:
+    status = H5Pset_dxpl_mpio_chunk_opt(xfer_plist,H5FD_MPIO_CHUNK_MULTI_IO);
+    VRFY((status>= 0),"collective chunk optimization succeeded ");
            break;
 
-	case API_LINK_TRUE:
+    case API_LINK_TRUE:
            status = H5Pset_dxpl_mpio_chunk_opt_num(xfer_plist,2);
-	   VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
+    VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
            break;
 
-	case API_LINK_FALSE:
+    case API_LINK_FALSE:
            status = H5Pset_dxpl_mpio_chunk_opt_num(xfer_plist,6);
            VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
            break;
 
-	case API_MULTI_COLL:
+    case API_MULTI_COLL:
            status = H5Pset_dxpl_mpio_chunk_opt_num(xfer_plist,8);/* make sure it is using multi-chunk IO */
            VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
-	   status = H5Pset_dxpl_mpio_chunk_opt_ratio(xfer_plist,50);
+    status = H5Pset_dxpl_mpio_chunk_opt_ratio(xfer_plist,50);
            VRFY((status>= 0),"collective chunk optimization set chunk ratio succeeded");
            break;
 
-	case API_MULTI_IND:
+    case API_MULTI_IND:
            status = H5Pset_dxpl_mpio_chunk_opt_num(xfer_plist,8);/* make sure it is using multi-chunk IO */
            VRFY((status>= 0),"collective chunk optimization set chunk number succeeded");
-	   status = H5Pset_dxpl_mpio_chunk_opt_ratio(xfer_plist,100);
+    status = H5Pset_dxpl_mpio_chunk_opt_ratio(xfer_plist,100);
            VRFY((status>= 0),"collective chunk optimization set chunk ratio succeeded");
            break;
 
-	default:
+    default:
             ;
    }
 
@@ -1615,7 +1615,7 @@ coll_chunktest(const char* filename,
 
   /* write data collectively */
   status = H5Dwrite(dataset, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
-		    xfer_plist, data_array1);
+            xfer_plist, data_array1);
   VRFY((status >= 0),"dataset write succeeded");
 
 #ifdef H5_HAVE_INSTRUMENTED_LIBRARY
@@ -1820,22 +1820,22 @@ coll_chunktest(const char* filename,
 
 /*****************************************************************************
  *
- * Function:	do_express_test()
+ * Function:    do_express_test()
  *
- * Purpose:	Do an MPI_Allreduce to obtain the maximum value returned
- * 		by GetTestExpress() across all processes.  Return this
- * 		value.
+ * Purpose:    Do an MPI_Allreduce to obtain the maximum value returned
+ *         by GetTestExpress() across all processes.  Return this
+ *         value.
  *
- * 		Envirmoment variables can be different across different
- * 		processes.  This function ensures that all processes agree
- * 		on whether to do an express test.
+ *         Envirmoment variables can be different across different
+ *         processes.  This function ensures that all processes agree
+ *         on whether to do an express test.
  *
- * Return:	Success:	Maximum of the values returned by
- * 				GetTestExpress() across	all processes.
+ * Return:    Success:    Maximum of the values returned by
+ *                 GetTestExpress() across    all processes.
  *
- *		Failure:	-1
+ *        Failure:    -1
  *
- * Programmer:	JRM -- 4/25/06
+ * Programmer:    JRM -- 4/25/06
  *
  *****************************************************************************/
 static int
@@ -1868,7 +1868,7 @@ do_express_test(int world_mpi_rank)
 } /* do_express_test() */
 
 
-int main(int argc, char **argv) 
+int main(int argc, char **argv)
 {
     int ExpressMode = 0;
     hsize_t newsize = 1048576;
@@ -1894,12 +1894,12 @@ int main(int argc, char **argv)
      * calls.  By then, MPI calls may not work.
      */
     if (H5dont_atexit() < 0){
-	HDprintf("Failed to turn off atexit processing. Continue.\n");
+    HDprintf("Failed to turn off atexit processing. Continue.\n");
     };
 
     /* set alarm. */
     ALARM_ON;
-    
+
     ExpressMode = do_express_test(mpi_rank);
 
     dataset_big_write();
@@ -1923,7 +1923,7 @@ int main(int argc, char **argv)
     /* turn off alarm */
     ALARM_OFF;
 
-    if (mpi_rank == 0) 
+    if (mpi_rank == 0)
         HDremove(FILENAME[0]);
 
     /* close HDF5 library */