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authorAllen Byrne <byrn@hdfgroup.org>2018-08-28 15:54:42 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2018-08-28 15:54:54 (GMT)
commit27af9a7922550a71a2e9d2b9f6a9f60aef0b4dda (patch)
treefe52ff7c826a75c89bab18078e146ea4a9de4b92 /testpar/t_dset.c
parent553b1a01f89265fc2f01c15687ddae40e6d1d81d (diff)
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HD prefix and whitespace
Diffstat (limited to 'testpar/t_dset.c')
-rw-r--r--testpar/t_dset.c1050
1 files changed, 528 insertions, 522 deletions
diff --git a/testpar/t_dset.c b/testpar/t_dset.c
index b315772..281d027 100644
--- a/testpar/t_dset.c
+++ b/testpar/t_dset.c
@@ -36,83 +36,91 @@
* Setup the dimensions of the hyperslab.
* Two modes--by rows or by columns.
* Assume dimension rank is 2.
- * BYROW divide into slabs of rows
- * BYCOL divide into blocks of columns
- * ZROW same as BYROW except process 0 gets 0 rows
- * ZCOL same as BYCOL except process 0 gets 0 columns
+ * BYROW divide into slabs of rows
+ * BYCOL divide into blocks of columns
+ * ZROW same as BYROW except process 0 gets 0 rows
+ * ZCOL same as BYCOL except process 0 gets 0 columns
*/
static void
slab_set(int mpi_rank, int mpi_size, hsize_t start[], hsize_t count[],
- hsize_t stride[], hsize_t block[], int mode)
+ hsize_t stride[], hsize_t block[], int mode)
{
- switch (mode){
+ switch (mode) {
case BYROW:
- /* Each process takes a slabs of rows. */
- block[0] = dim0/mpi_size;
- block[1] = dim1;
- stride[0] = block[0];
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = mpi_rank*block[0];
- start[1] = 0;
-if(VERBOSE_MED) printf("slab_set BYROW\n");
- break;
+ /* Each process takes a slabs of rows. */
+ block[0] = dim0 / mpi_size;
+ block[1] = dim1;
+ stride[0] = block[0];
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = mpi_rank * block[0];
+ start[1] = 0;
+ if (VERBOSE_MED)
+ HDprintf("slab_set BYROW\n");
+ break;
case BYCOL:
- /* Each process takes a block of columns. */
- block[0] = dim0;
- block[1] = dim1/mpi_size;
- stride[0] = block[0];
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = 0;
- start[1] = mpi_rank*block[1];
-if(VERBOSE_MED) printf("slab_set BYCOL\n");
- break;
+ /* Each process takes a block of columns. */
+ block[0] = dim0;
+ block[1] = dim1 / mpi_size;
+ stride[0] = block[0];
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = 0;
+ start[1] = mpi_rank * block[1];
+ if (VERBOSE_MED)
+ HDprintf("slab_set BYCOL\n");
+ break;
case ZROW:
- /* Similar to BYROW except process 0 gets 0 row */
- block[0] = (mpi_rank ? dim0/mpi_size : 0);
- block[1] = dim1;
- stride[0] = (mpi_rank ? block[0] : 1); /* avoid setting stride to 0 */
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = (mpi_rank? mpi_rank*block[0] : 0);
- start[1] = 0;
-if(VERBOSE_MED) printf("slab_set ZROW\n");
- break;
+ /* Similar to BYROW except process 0 gets 0 row */
+ block[0] = (mpi_rank ? dim0 / mpi_size : 0);
+ block[1] = dim1;
+ stride[0] = (mpi_rank ? block[0] : 1); /* avoid setting stride to 0 */
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = (mpi_rank ? mpi_rank * block[0] : 0);
+ start[1] = 0;
+ if (VERBOSE_MED)
+ HDprintf("slab_set ZROW\n");
+ break;
case ZCOL:
- /* Similar to BYCOL except process 0 gets 0 column */
- block[0] = dim0;
- block[1] = (mpi_rank ? dim1/mpi_size : 0);
- stride[0] = block[0];
- stride[1] = (mpi_rank ? block[1] : 1); /* avoid setting stride to 0 */
- count[0] = 1;
- count[1] = 1;
- start[0] = 0;
- start[1] = (mpi_rank? mpi_rank*block[1] : 0);
-if(VERBOSE_MED) printf("slab_set ZCOL\n");
- break;
+ /* Similar to BYCOL except process 0 gets 0 column */
+ block[0] = dim0;
+ block[1] = (mpi_rank ? dim1 / mpi_size : 0);
+ stride[0] = block[0];
+ stride[1] = (mpi_rank ? block[1] : 1); /* avoid setting stride to 0 */
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = 0;
+ start[1] = (mpi_rank ? mpi_rank * block[1] : 0);
+ if (VERBOSE_MED)
+ HDprintf("slab_set ZCOL\n");
+ break;
default:
- /* Unknown mode. Set it to cover the whole dataset. */
- printf("unknown slab_set mode (%d)\n", mode);
- block[0] = dim0;
- block[1] = dim1;
- stride[0] = block[0];
- stride[1] = block[1];
- count[0] = 1;
- count[1] = 1;
- start[0] = 0;
- start[1] = 0;
-if(VERBOSE_MED) printf("slab_set wholeset\n");
- break;
+ /* Unknown mode. Set it to cover the whole dataset. */
+ HDprintf("unknown slab_set mode (%d)\n", mode);
+ block[0] = dim0;
+ block[1] = dim1;
+ stride[0] = block[0];
+ stride[1] = block[1];
+ count[0] = 1;
+ count[1] = 1;
+ start[0] = 0;
+ start[1] = 0;
+ if (VERBOSE_MED)
+ HDprintf("slab_set wholeset\n");
+ break;
}
-if(VERBOSE_MED){
- printf("start[]=(%lu,%lu), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total datapoints=%lu\n",
- (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
- (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
- (unsigned long)(block[0]*block[1]*count[0]*count[1]));
+ if (VERBOSE_MED) {
+ HDprintf(
+ "start[]=(%lu,%lu), count[]=(%lu,%lu), stride[]=(%lu,%lu), block[]=(%lu,%lu), total datapoints=%lu\n",
+ (unsigned long) start[0], (unsigned long) start[1],
+ (unsigned long) count[0], (unsigned long) count[1],
+ (unsigned long) stride[0], (unsigned long) stride[1],
+ (unsigned long) block[0], (unsigned long) block[1],
+ (unsigned long) (block[0] * block[1] * count[0] * count[1]));
}
}
@@ -123,7 +131,7 @@ void point_set(hsize_t start[],
hsize_t count[],
hsize_t stride[],
hsize_t block[],
- size_t num_points,
+ size_t num_points,
hsize_t coords[],
int order)
{
@@ -153,13 +161,13 @@ void point_set(hsize_t start[],
}
if(VERBOSE_MED) {
- printf("start[]=(%lu, %lu), count[]=(%lu, %lu), stride[]=(%lu, %lu), block[]=(%lu, %lu), total datapoints=%lu\n",
+ HDprintf("start[]=(%lu, %lu), count[]=(%lu, %lu), stride[]=(%lu, %lu), block[]=(%lu, %lu), total datapoints=%lu\n",
(unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
(unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1],
(unsigned long)(block[0] * block[1] * count[0] * count[1]));
k = 0;
for(i = 0; i < num_points ; i++) {
- printf("(%d, %d)\n", (int)coords[k], (int)coords[k + 1]);
+ HDprintf("(%d, %d)\n", (int)coords[k], (int)coords[k + 1]);
k += 2;
}
}
@@ -177,10 +185,10 @@ dataset_fill(hsize_t start[], hsize_t block[], DATATYPE * dataset)
/* put some trivial data in the data_array */
for (i=0; i < block[0]; i++){
- for (j=0; j < block[1]; j++){
- *dataptr = (DATATYPE)((i+start[0])*100 + (j+start[1]+1));
- dataptr++;
- }
+ for (j=0; j < block[1]; j++){
+ *dataptr = (DATATYPE)((i+start[0])*100 + (j+start[1]+1));
+ dataptr++;
+ }
}
}
@@ -195,19 +203,19 @@ dataset_print(hsize_t start[], hsize_t block[], DATATYPE * dataset)
hsize_t i, j;
/* print the column heading */
- printf("%-8s", "Cols:");
+ HDprintf("%-8s", "Cols:");
for (j=0; j < block[1]; j++){
- printf("%3lu ", (unsigned long)(start[1]+j));
+ HDprintf("%3lu ", (unsigned long)(start[1]+j));
}
- printf("\n");
+ HDprintf("\n");
/* print the slab data */
for (i=0; i < block[0]; i++){
- printf("Row %2lu: ", (unsigned long)(i+start[0]));
- for (j=0; j < block[1]; j++){
- printf("%03d ", *dataptr++);
- }
- printf("\n");
+ HDprintf("Row %2lu: ", (unsigned long)(i+start[0]));
+ for (j=0; j < block[1]; j++){
+ HDprintf("%03d ", *dataptr++);
+ }
+ HDprintf("\n");
}
}
@@ -223,35 +231,35 @@ dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[]
/* print it if VERBOSE_MED */
if(VERBOSE_MED) {
- printf("dataset_vrfy dumping:::\n");
- printf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
- (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
- (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
- printf("original values:\n");
- dataset_print(start, block, original);
- printf("compared values:\n");
- dataset_print(start, block, dataset);
+ HDprintf("dataset_vrfy dumping:::\n");
+ HDprintf("start(%lu, %lu), count(%lu, %lu), stride(%lu, %lu), block(%lu, %lu)\n",
+ (unsigned long)start[0], (unsigned long)start[1], (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)stride[0], (unsigned long)stride[1], (unsigned long)block[0], (unsigned long)block[1]);
+ HDprintf("original values:\n");
+ dataset_print(start, block, original);
+ HDprintf("compared values:\n");
+ dataset_print(start, block, dataset);
}
vrfyerrs = 0;
for (i=0; i < block[0]; i++){
- for (j=0; j < block[1]; j++){
- if(*dataset != *original){
- if(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
- printf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %d, got %d\n",
- (unsigned long)i, (unsigned long)j,
- (unsigned long)(i+start[0]), (unsigned long)(j+start[1]),
- *(original), *(dataset));
- }
- dataset++;
- original++;
- }
- }
+ for (j=0; j < block[1]; j++){
+ if(*dataset != *original){
+ if(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED){
+ HDprintf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %d, got %d\n",
+ (unsigned long)i, (unsigned long)j,
+ (unsigned long)(i+start[0]), (unsigned long)(j+start[1]),
+ *(original), *(dataset));
+ }
+ dataset++;
+ original++;
+ }
+ }
}
if(vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
- printf("[more errors ...]\n");
+ HDprintf("[more errors ...]\n");
if(vrfyerrs)
- printf("%d errors found in dataset_vrfy\n", vrfyerrs);
+ HDprintf("%d errors found in dataset_vrfy\n", vrfyerrs);
return(vrfyerrs);
}
@@ -272,20 +280,20 @@ void
dataset_writeInd(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
- hsize_t dims[RANK]; /* dataset dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
+ hid_t acc_tpl; /* File access templates */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ hsize_t dims[RANK]; /* dataset dim sizes */
+ DATATYPE *data_array1 = NULL; /* data buffer */
const char *filename;
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -293,7 +301,7 @@ dataset_writeInd(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Independent write test on file %s\n", filename);
+ HDprintf("Independent write test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -332,12 +340,12 @@ dataset_writeInd(void)
/* create a dataset collectively */
dataset1 = H5Dcreate2(fid, DATASETNAME1, H5T_NATIVE_INT, sid,
- H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
VRFY((dataset1 >= 0), "H5Dcreate2 succeeded");
/* create another dataset collectively */
dataset2 = H5Dcreate2(fid, DATASETNAME2, H5T_NATIVE_INT, sid,
- H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
VRFY((dataset2 >= 0), "H5Dcreate2 succeeded");
@@ -366,28 +374,28 @@ dataset_writeInd(void)
/* write data independently */
ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 succeeded");
/* write data independently */
ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset2 succeeded");
/* setup dimensions again to write with zero rows for process 0 */
if(VERBOSE_MED)
- printf("writeInd by some with zero row\n");
+ HDprintf("writeInd by some with zero row\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZROW);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("writeInd by some with zero row");
if((mpi_rank/2)*2 != mpi_rank){
ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 by ZROW succeeded");
}
#ifdef BARRIER_CHECKS
@@ -418,19 +426,19 @@ void
dataset_readInd(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
- DATATYPE *data_array1 = NULL; /* data buffer */
- DATATYPE *data_origin1 = NULL; /* expected data buffer */
+ hid_t acc_tpl; /* File access templates */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ DATATYPE *data_array1 = NULL; /* data buffer */
+ DATATYPE *data_origin1 = NULL; /* expected data buffer */
const char *filename;
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -438,7 +446,7 @@ dataset_readInd(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Independent read test on file %s\n", filename);
+ HDprintf("Independent read test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -489,7 +497,7 @@ dataset_readInd(void)
/* read data independently */
ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "");
/* verify the read data with original expected data */
@@ -498,7 +506,7 @@ dataset_readInd(void)
/* read data independently */
ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "");
/* verify the read data with original expected data */
@@ -540,28 +548,28 @@ void
dataset_writeAll(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
hid_t dataset1, dataset2, dataset3, dataset4; /* Dataset ID */
hid_t dataset5, dataset6, dataset7; /* Dataset ID */
- hid_t datatype; /* Datatype ID */
- hsize_t dims[RANK]; /* dataset dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
+ hid_t datatype; /* Datatype ID */
+ hsize_t dims[RANK]; /* dataset dim sizes */
+ DATATYPE *data_array1 = NULL; /* data buffer */
const char *filename;
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
size_t num_points; /* for point selection */
hsize_t *coords = NULL; /* for point selection */
hsize_t current_dims; /* for point selection */
int i;
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -569,7 +577,7 @@ dataset_writeAll(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Collective write test on file %s\n", filename);
+ HDprintf("Collective write test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -669,8 +677,8 @@ dataset_writeAll(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* set up the collective transfer properties list */
@@ -687,23 +695,23 @@ dataset_writeAll(void)
/* write data collectively */
MESG("writeAll by Row");
ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 succeeded");
/* setup dimensions again to writeAll with zero rows for process 0 */
if(VERBOSE_MED)
- printf("writeAll by some with zero row\n");
+ HDprintf("writeAll by some with zero row\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZROW);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("writeAll by some with zero row");
ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 by ZROW succeeded");
/* release all temporary handles. */
@@ -720,8 +728,8 @@ dataset_writeAll(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a file dataspace independently */
@@ -738,8 +746,8 @@ dataset_writeAll(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* set up the collective transfer properties list */
@@ -755,23 +763,23 @@ dataset_writeAll(void)
/* write data independently */
ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset2 succeeded");
/* setup dimensions again to writeAll with zero columns for process 0 */
if(VERBOSE_MED)
- printf("writeAll by some with zero col\n");
+ HDprintf("writeAll by some with zero col\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZCOL);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("writeAll by some with zero col");
ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset1 by ZCOL succeeded");
/* release all temporary handles. */
@@ -789,8 +797,8 @@ dataset_writeAll(void)
file_dataspace = H5Dget_space (dataset3);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
if(MAINPROCESS) {
- ret = H5Sselect_none(file_dataspace);
- VRFY((ret >= 0), "H5Sselect_none file_dataspace succeeded");
+ ret = H5Sselect_none(file_dataspace);
+ VRFY((ret >= 0), "H5Sselect_none file_dataspace succeeded");
} /* end if */
else {
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
@@ -801,16 +809,16 @@ dataset_writeAll(void)
mem_dataspace = H5Screate_simple (RANK, block, NULL);
VRFY((mem_dataspace >= 0), "");
if(MAINPROCESS) {
- ret = H5Sselect_none(mem_dataspace);
- VRFY((ret >= 0), "H5Sselect_none mem_dataspace succeeded");
+ ret = H5Sselect_none(mem_dataspace);
+ VRFY((ret >= 0), "H5Sselect_none mem_dataspace succeeded");
} /* end if */
/* fill the local slab with some trivial data */
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED) {
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
} /* end if */
/* set up the collective transfer properties list */
@@ -827,13 +835,13 @@ dataset_writeAll(void)
/* write data collectively */
MESG("writeAll with none");
ret = H5Dwrite(dataset3, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset3 succeeded");
/* write data collectively (with datatype conversion) */
MESG("writeAll with none");
ret = H5Dwrite(dataset3, H5T_NATIVE_UCHAR, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset3 succeeded");
/* release all temporary handles. */
@@ -850,8 +858,8 @@ dataset_writeAll(void)
file_dataspace = H5Dget_space (dataset4);
VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
if(MAINPROCESS) {
- ret = H5Sselect_none(file_dataspace);
- VRFY((ret >= 0), "H5Sselect_all file_dataspace succeeded");
+ ret = H5Sselect_none(file_dataspace);
+ VRFY((ret >= 0), "H5Sselect_all file_dataspace succeeded");
} /* end if */
else {
ret = H5Sselect_all(file_dataspace);
@@ -862,8 +870,8 @@ dataset_writeAll(void)
mem_dataspace = H5Screate(H5S_SCALAR);
VRFY((mem_dataspace >= 0), "");
if(MAINPROCESS) {
- ret = H5Sselect_none(mem_dataspace);
- VRFY((ret >= 0), "H5Sselect_all mem_dataspace succeeded");
+ ret = H5Sselect_none(mem_dataspace);
+ VRFY((ret >= 0), "H5Sselect_all mem_dataspace succeeded");
} /* end if */
else {
ret = H5Sselect_all(mem_dataspace);
@@ -874,8 +882,8 @@ dataset_writeAll(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED) {
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
} /* end if */
/* set up the collective transfer properties list */
@@ -891,13 +899,13 @@ dataset_writeAll(void)
/* write data collectively */
MESG("writeAll with scalar dataspace");
ret = H5Dwrite(dataset4, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset4 succeeded");
/* write data collectively (with datatype conversion) */
MESG("writeAll with scalar dataspace");
ret = H5Dwrite(dataset4, H5T_NATIVE_UCHAR, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite dataset4 succeeded");
/* release all temporary handles. */
@@ -907,7 +915,7 @@ dataset_writeAll(void)
if(data_array1) free(data_array1);
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
block[0] = 1;
@@ -922,15 +930,15 @@ dataset_writeAll(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* Dataset5: point selection in File - Hyperslab selection in Memory*/
/* create a file dataspace independently */
point_set (start, count, stride, block, num_points, coords, OUT_OF_ORDER);
file_dataspace = H5Dget_space (dataset5);
- VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
+ VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(file_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
@@ -1005,7 +1013,7 @@ dataset_writeAll(void)
start[1] = 0;
point_set (start, count, stride, block, num_points, coords, IN_ORDER);
file_dataspace = H5Dget_space (dataset7);
- VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
+ VRFY((file_dataspace >= 0), "H5Dget_space succeeded");
ret = H5Sselect_elements(file_dataspace, H5S_SELECT_SET, num_points, coords);
VRFY((ret >= 0), "H5Sselect_elements succeeded");
@@ -1075,25 +1083,25 @@ void
dataset_readAll(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
hid_t dataset1, dataset2, dataset5, dataset6, dataset7; /* Dataset ID */
- DATATYPE *data_array1 = NULL; /* data buffer */
- DATATYPE *data_origin1 = NULL; /* expected data buffer */
+ DATATYPE *data_array1 = NULL; /* data buffer */
+ DATATYPE *data_origin1 = NULL; /* expected data buffer */
const char *filename;
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
size_t num_points; /* for point selection */
hsize_t *coords = NULL; /* for point selection */
hsize_t current_dims; /* for point selection */
int i,j,k;
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -1101,7 +1109,7 @@ dataset_readAll(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Collective read test on file %s\n", filename);
+ HDprintf("Collective read test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -1174,8 +1182,8 @@ dataset_readAll(void)
dataset_fill(start, block, data_origin1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_origin1);
+ MESG("data_array created");
+ dataset_print(start, block, data_origin1);
}
/* set up the collective transfer properties list */
@@ -1191,7 +1199,7 @@ dataset_readAll(void)
/* read data collectively */
ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset1 succeeded");
/* verify the read data with original expected data */
@@ -1200,18 +1208,18 @@ dataset_readAll(void)
/* setup dimensions again to readAll with zero columns for process 0 */
if(VERBOSE_MED)
- printf("readAll by some with zero col\n");
+ HDprintf("readAll by some with zero col\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZCOL);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("readAll by some with zero col");
ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset1 by ZCOL succeeded");
/* verify the read data with original expected data */
@@ -1242,8 +1250,8 @@ dataset_readAll(void)
dataset_fill(start, block, data_origin1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_origin1);
+ MESG("data_array created");
+ dataset_print(start, block, data_origin1);
}
/* set up the collective transfer properties list */
@@ -1259,7 +1267,7 @@ dataset_readAll(void)
/* read data collectively */
ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset2 succeeded");
/* verify the read data with original expected data */
@@ -1268,18 +1276,18 @@ dataset_readAll(void)
/* setup dimensions again to readAll with zero rows for process 0 */
if(VERBOSE_MED)
- printf("readAll by some with zero row\n");
+ HDprintf("readAll by some with zero row\n");
slab_set(mpi_rank, mpi_size, start, count, stride, block, ZROW);
ret = H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
/* need to make mem_dataspace to match for process 0 */
if(MAINPROCESS){
- ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
- VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
+ ret = H5Sselect_hyperslab(mem_dataspace, H5S_SELECT_SET, start, stride, count, block);
+ VRFY((ret >= 0), "H5Sset_hyperslab mem_dataspace succeeded");
}
MESG("readAll by some with zero row");
ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset1 by ZROW succeeded");
/* verify the read data with original expected data */
@@ -1293,9 +1301,9 @@ dataset_readAll(void)
if(data_array1) free(data_array1);
if(data_origin1) free(data_origin1);
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
block[0] = 1;
@@ -1310,8 +1318,8 @@ dataset_readAll(void)
dataset_fill(start, block, data_origin1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_origin1);
+ MESG("data_array created");
+ dataset_print(start, block, data_origin1);
}
/* Dataset5: point selection in memory - Hyperslab selection in file*/
@@ -1344,7 +1352,7 @@ dataset_readAll(void)
xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread dataset5 succeeded");
-
+
ret = dataset_vrfy(start, count, stride, block, data_array1, data_origin1);
if(ret) nerrors++;
@@ -1355,7 +1363,7 @@ dataset_readAll(void)
if(data_array1) free(data_array1);
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
/* Dataset6: point selection in File - Point selection in Memory*/
@@ -1400,7 +1408,7 @@ dataset_readAll(void)
H5Pclose(xfer_plist);
if(data_array1) free(data_array1);
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
/* Dataset7: point selection in memory - All selection in file*/
@@ -1488,25 +1496,25 @@ void
extend_writeInd(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
const char *filename;
- hsize_t dims[RANK]; /* dataset dim sizes */
+ hsize_t dims[RANK]; /* dataset dim sizes */
hsize_t max_dims[RANK] =
- {H5S_UNLIMITED, H5S_UNLIMITED}; /* dataset maximum dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
- hsize_t chunk_dims[RANK]; /* chunk sizes */
- hid_t dataset_pl; /* dataset create prop. list */
+ {H5S_UNLIMITED, H5S_UNLIMITED}; /* dataset maximum dim sizes */
+ DATATYPE *data_array1 = NULL; /* data buffer */
+ hsize_t chunk_dims[RANK]; /* chunk sizes */
+ hid_t dataset_pl; /* dataset create prop. list */
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK]; /* for hyperslab setting */
- hsize_t stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK]; /* for hyperslab setting */
+ hsize_t stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -1514,7 +1522,7 @@ extend_writeInd(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Extend independent write test on file %s\n", filename);
+ HDprintf("Extend independent write test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -1567,7 +1575,7 @@ extend_writeInd(void)
/* set up dataset storage chunk sizes and creation property list */
if(VERBOSE_MED)
- printf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
+ HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
dataset_pl = H5Pcreate(H5P_DATASET_CREATE);
VRFY((dataset_pl >= 0), "H5Pcreate succeeded");
ret = H5Pset_chunk(dataset_pl, RANK, chunk_dims);
@@ -1603,8 +1611,8 @@ extend_writeInd(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED) {
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a memory dataspace independently */
@@ -1625,7 +1633,7 @@ extend_writeInd(void)
/* write data independently */
ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* release resource */
@@ -1643,8 +1651,8 @@ extend_writeInd(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a memory dataspace independently */
@@ -1664,7 +1672,7 @@ extend_writeInd(void)
/* write data independently. Should fail. */
ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret < 0), "H5Dwrite failed as expected");
/* restore auto error reporting */
@@ -1685,7 +1693,7 @@ extend_writeInd(void)
/* write data independently */
ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* release resource */
@@ -1719,25 +1727,25 @@ extend_writeInd2(void)
{
const char *filename;
hid_t fid; /* HDF5 file ID */
- hid_t fapl; /* File access templates */
- hid_t fs; /* File dataspace ID */
- hid_t ms; /* Memory dataspace ID */
- hid_t dataset; /* Dataset ID */
- hsize_t orig_size=10; /* Original dataset dim size */
- hsize_t new_size=20; /* Extended dataset dim size */
+ hid_t fapl; /* File access templates */
+ hid_t fs; /* File dataspace ID */
+ hid_t ms; /* Memory dataspace ID */
+ hid_t dataset; /* Dataset ID */
+ hsize_t orig_size=10; /* Original dataset dim size */
+ hsize_t new_size=20; /* Extended dataset dim size */
hsize_t one=1;
- hsize_t max_size = H5S_UNLIMITED; /* dataset maximum dim size */
- hsize_t chunk_size = 16384; /* chunk size */
- hid_t dcpl; /* dataset create prop. list */
+ hsize_t max_size = H5S_UNLIMITED; /* dataset maximum dim size */
+ hsize_t chunk_size = 16384; /* chunk size */
+ hid_t dcpl; /* dataset create prop. list */
int written[10], /* Data to write */
retrieved[10]; /* Data read in */
int mpi_size, mpi_rank; /* MPI settings */
int i; /* Local index variable */
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Extend independent write test #2 on file %s\n", filename);
+ HDprintf("Extend independent write test #2 on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -1794,10 +1802,10 @@ extend_writeInd2(void)
written[i] = i;
MESG("data array initialized");
if(VERBOSE_MED) {
- MESG("writing at offset zero: ");
+ MESG("writing at offset zero: ");
for(i = 0; i < (int)orig_size; i++)
- printf("%s%d", i?", ":"", written[i]);
- printf("\n");
+ HDprintf("%s%d", i?", ":"", written[i]);
+ HDprintf("\n");
}
ret = H5Dwrite(dataset, H5T_NATIVE_INT, ms, fs, H5P_DEFAULT, written);
VRFY((ret >= 0), "H5Dwrite succeeded");
@@ -1809,15 +1817,15 @@ extend_writeInd2(void)
VRFY((ret >= 0), "H5Dread succeeded");
for (i=0; i<(int)orig_size; i++)
if(written[i]!=retrieved[i]) {
- printf("Line #%d: written!=retrieved: written[%d]=%d, retrieved[%d]=%d\n",__LINE__,
+ HDprintf("Line #%d: written!=retrieved: written[%d]=%d, retrieved[%d]=%d\n",__LINE__,
i,written[i], i,retrieved[i]);
nerrors++;
}
if(VERBOSE_MED){
- MESG("read at offset zero: ");
+ MESG("read at offset zero: ");
for (i=0; i<(int)orig_size; i++)
- printf("%s%d", i?", ":"", retrieved[i]);
- printf("\n");
+ HDprintf("%s%d", i?", ":"", retrieved[i]);
+ HDprintf("\n");
}
/* -------------------------
@@ -1837,10 +1845,10 @@ extend_writeInd2(void)
written[i] = orig_size + i;
MESG("data array re-initialized");
if(VERBOSE_MED) {
- MESG("writing at offset 10: ");
+ MESG("writing at offset 10: ");
for (i=0; i<(int)orig_size; i++)
- printf("%s%d", i?", ":"", written[i]);
- printf("\n");
+ HDprintf("%s%d", i?", ":"", written[i]);
+ HDprintf("\n");
}
ret = H5Sselect_hyperslab(fs, H5S_SELECT_SET, &orig_size, NULL, &one, &orig_size);
VRFY((ret >= 0), "H5Sselect_hyperslab succeeded");
@@ -1854,15 +1862,15 @@ extend_writeInd2(void)
VRFY((ret >= 0), "H5Dread succeeded");
for (i=0; i<(int)orig_size; i++)
if(written[i]!=retrieved[i]) {
- printf("Line #%d: written!=retrieved: written[%d]=%d, retrieved[%d]=%d\n",__LINE__,
+ HDprintf("Line #%d: written!=retrieved: written[%d]=%d, retrieved[%d]=%d\n",__LINE__,
i,written[i], i,retrieved[i]);
nerrors++;
}
if(VERBOSE_MED){
- MESG("read at offset 10: ");
+ MESG("read at offset 10: ");
for (i=0; i<(int)orig_size; i++)
- printf("%s%d", i?", ":"", retrieved[i]);
- printf("\n");
+ HDprintf("%s%d", i?", ":"", retrieved[i]);
+ HDprintf("\n");
}
@@ -1879,22 +1887,22 @@ extend_writeInd2(void)
void
extend_readInd(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
- hsize_t dims[RANK]; /* dataset dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
- DATATYPE *data_array2 = NULL; /* data buffer */
- DATATYPE *data_origin1 = NULL; /* expected data buffer */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ hsize_t dims[RANK]; /* dataset dim sizes */
+ DATATYPE *data_array1 = NULL; /* data buffer */
+ DATATYPE *data_array2 = NULL; /* data buffer */
+ DATATYPE *data_origin1 = NULL; /* expected data buffer */
const char *filename;
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -1902,7 +1910,7 @@ extend_readInd(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Extend independent read test on file %s\n", filename);
+ HDprintf("Extend independent read test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -1974,13 +1982,13 @@ extend_readInd(void)
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* read data independently */
ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dread succeeded");
/* verify the read data with original expected data */
@@ -2009,13 +2017,13 @@ extend_readInd(void)
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* read data independently */
ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array1);
+ H5P_DEFAULT, data_array1);
VRFY((ret >= 0), "H5Dread succeeded");
/* verify the read data with original expected data */
@@ -2058,26 +2066,26 @@ void
extend_writeAll(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
const char *filename;
- hsize_t dims[RANK]; /* dataset dim sizes */
+ hsize_t dims[RANK]; /* dataset dim sizes */
hsize_t max_dims[RANK] =
- {H5S_UNLIMITED, H5S_UNLIMITED}; /* dataset maximum dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
- hsize_t chunk_dims[RANK]; /* chunk sizes */
- hid_t dataset_pl; /* dataset create prop. list */
+ {H5S_UNLIMITED, H5S_UNLIMITED}; /* dataset maximum dim sizes */
+ DATATYPE *data_array1 = NULL; /* data buffer */
+ hsize_t chunk_dims[RANK]; /* chunk sizes */
+ hid_t dataset_pl; /* dataset create prop. list */
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK]; /* for hyperslab setting */
- hsize_t stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK]; /* for hyperslab setting */
+ hsize_t stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -2085,7 +2093,7 @@ extend_writeAll(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Extend independent write test on file %s\n", filename);
+ HDprintf("Extend independent write test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -2138,7 +2146,7 @@ extend_writeAll(void)
/* set up dataset storage chunk sizes and creation property list */
if(VERBOSE_MED)
- printf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
+ HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
dataset_pl = H5Pcreate(H5P_DATASET_CREATE);
VRFY((dataset_pl >= 0), "H5Pcreate succeeded");
ret = H5Pset_chunk(dataset_pl, RANK, chunk_dims);
@@ -2174,8 +2182,8 @@ extend_writeAll(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED) {
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a memory dataspace independently */
@@ -2207,7 +2215,7 @@ extend_writeAll(void)
/* write data collectively */
ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* release resource */
@@ -2226,8 +2234,8 @@ extend_writeAll(void)
dataset_fill(start, block, data_array1);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* create a memory dataspace independently */
@@ -2258,7 +2266,7 @@ extend_writeAll(void)
/* write data independently. Should fail. */
ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret < 0), "H5Dwrite failed as expected");
/* restore auto error reporting */
@@ -2279,7 +2287,7 @@ extend_writeAll(void)
/* write data independently */
ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* release resource */
@@ -2308,23 +2316,23 @@ extend_writeAll(void)
void
extend_readAll(void)
{
- hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
+ hid_t fid; /* HDF5 file ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
const char *filename;
- hsize_t dims[RANK]; /* dataset dim sizes */
- DATATYPE *data_array1 = NULL; /* data buffer */
- DATATYPE *data_array2 = NULL; /* data buffer */
- DATATYPE *data_origin1 = NULL; /* expected data buffer */
+ hsize_t dims[RANK]; /* dataset dim sizes */
+ DATATYPE *data_array1 = NULL; /* data buffer */
+ DATATYPE *data_array2 = NULL; /* data buffer */
+ DATATYPE *data_origin1 = NULL; /* expected data buffer */
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK], stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -2332,7 +2340,7 @@ extend_readAll(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Extend independent read test on file %s\n", filename);
+ HDprintf("Extend independent read test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -2404,8 +2412,8 @@ extend_readAll(void)
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* set up the collective transfer properties list */
@@ -2421,7 +2429,7 @@ extend_readAll(void)
/* read data collectively */
ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread succeeded");
/* verify the read data with original expected data */
@@ -2451,8 +2459,8 @@ extend_readAll(void)
/* fill dataset with test data */
dataset_fill(start, block, data_origin1);
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(start, block, data_array1);
+ MESG("data_array created");
+ dataset_print(start, block, data_array1);
}
/* set up the collective transfer properties list */
@@ -2468,7 +2476,7 @@ extend_readAll(void)
/* read data collectively */
ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_array1);
+ xfer_plist, data_array1);
VRFY((ret >= 0), "H5Dread succeeded");
/* verify the read data with original expected data */
@@ -2505,27 +2513,27 @@ void
compress_readAll(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
+ hid_t acc_tpl; /* File access templates */
hid_t dcpl; /* Dataset creation property list */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t dataspace; /* Dataspace ID */
- hid_t dataset; /* Dataset ID */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t dataspace; /* Dataspace ID */
+ hid_t dataset; /* Dataset ID */
int rank=1; /* Dataspace rank */
hsize_t dim=dim0; /* Dataspace dimensions */
unsigned u; /* Local index variable */
unsigned chunk_opts; /* Chunk options */
unsigned disable_partial_chunk_filters; /* Whether filters are disabled on partial chunks */
- DATATYPE *data_read = NULL; /* data buffer */
+ DATATYPE *data_read = NULL; /* data buffer */
DATATYPE *data_orig = NULL; /* expected data buffer */
const char *filename;
MPI_Comm comm = MPI_COMM_WORLD;
MPI_Info info = MPI_INFO_NULL;
int mpi_size, mpi_rank;
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Collective chunked dataset read test on file %s\n", filename);
+ HDprintf("Collective chunked dataset read test on file %s\n", filename);
/* Retrieve MPI parameters */
MPI_Comm_size(comm,&mpi_size);
@@ -2646,7 +2654,7 @@ compress_readAll(void)
/* Verify data read */
for(u=0; u<dim; u++)
if(data_orig[u]!=data_read[u]) {
- printf("Line #%d: written!=retrieved: data_orig[%u]=%d, data_read[%u]=%d\n",__LINE__,
+ HDprintf("Line #%d: written!=retrieved: data_orig[%u]=%d, data_read[%u]=%d\n",__LINE__,
(unsigned)u,data_orig[u],(unsigned)u,data_read[u]);
nerrors++;
}
@@ -2687,26 +2695,26 @@ void
none_selection_chunk(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t xfer_plist; /* Dataset transfer properties list */
- hid_t sid; /* Dataspace ID */
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* memory dataspace ID */
- hid_t dataset1, dataset2; /* Dataset ID */
+ hid_t acc_tpl; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t sid; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
const char *filename;
- hsize_t dims[RANK]; /* dataset dim sizes */
- DATATYPE *data_origin = NULL; /* data buffer */
- DATATYPE *data_array = NULL; /* data buffer */
- hsize_t chunk_dims[RANK]; /* chunk sizes */
- hid_t dataset_pl; /* dataset create prop. list */
-
- hsize_t start[RANK]; /* for hyperslab setting */
- hsize_t count[RANK]; /* for hyperslab setting */
- hsize_t stride[RANK]; /* for hyperslab setting */
- hsize_t block[RANK]; /* for hyperslab setting */
- hsize_t mstart[RANK]; /* for data buffer in memory */
-
- herr_t ret; /* Generic return value */
+ hsize_t dims[RANK]; /* dataset dim sizes */
+ DATATYPE *data_origin = NULL; /* data buffer */
+ DATATYPE *data_array = NULL; /* data buffer */
+ hsize_t chunk_dims[RANK]; /* chunk sizes */
+ hid_t dataset_pl; /* dataset create prop. list */
+
+ hsize_t start[RANK]; /* for hyperslab setting */
+ hsize_t count[RANK]; /* for hyperslab setting */
+ hsize_t stride[RANK]; /* for hyperslab setting */
+ hsize_t block[RANK]; /* for hyperslab setting */
+ hsize_t mstart[RANK]; /* for data buffer in memory */
+
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
MPI_Comm comm = MPI_COMM_WORLD;
@@ -2714,7 +2722,7 @@ none_selection_chunk(void)
filename = GetTestParameters();
if(VERBOSE_MED)
- printf("Extend independent write test on file %s\n", filename);
+ HDprintf("Extend independent write test on file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -2745,7 +2753,7 @@ none_selection_chunk(void)
/* set up dataset storage chunk sizes and creation property list */
if(VERBOSE_MED)
- printf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
+ HDprintf("chunks[]=%lu,%lu\n", (unsigned long)chunk_dims[0], (unsigned long)chunk_dims[1]);
dataset_pl = H5Pcreate(H5P_DATASET_CREATE);
VRFY((dataset_pl >= 0), "H5Pcreate succeeded");
ret = H5Pset_chunk(dataset_pl, RANK, chunk_dims);
@@ -2789,8 +2797,8 @@ none_selection_chunk(void)
dataset_fill(mstart, block, data_origin);
MESG("data_array initialized");
if(VERBOSE_MED){
- MESG("data_array created");
- dataset_print(mstart, block, data_origin);
+ MESG("data_array created");
+ dataset_print(mstart, block, data_origin);
}
}
@@ -2824,12 +2832,12 @@ none_selection_chunk(void)
/* write data collectively */
ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_origin);
+ xfer_plist, data_origin);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* read data independently */
ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array);
+ H5P_DEFAULT, data_array);
VRFY((ret >= 0), "");
/* verify the read data with original expected data */
@@ -2846,12 +2854,12 @@ none_selection_chunk(void)
/* write data collectively */
ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- xfer_plist, data_origin);
+ xfer_plist, data_origin);
VRFY((ret >= 0), "H5Dwrite succeeded");
/* read data independently */
ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
- H5P_DEFAULT, data_array);
+ H5P_DEFAULT, data_array);
VRFY((ret >= 0), "");
/* verify the read data with original expected data */
@@ -2883,20 +2891,20 @@ none_selection_chunk(void)
if(data_array) HDfree(data_array);
}
-
+
/* Function: test_actual_io_mode
*
- * Purpose: tests one specific case of collective I/O and checks that the
+ * Purpose: tests one specific case of collective I/O and checks that the
* actual_chunk_opt_mode property and the actual_io_mode
* properties in the DXPL have the correct values.
*
* Input: selection_mode: changes the way processes select data from the space, as well
* as some dxpl flags to get collective I/O to break in different ways.
- *
+ *
* The relevant I/O function and expected response for each mode:
* TEST_ACTUAL_IO_MULTI_CHUNK_IND:
* H5D_mpi_chunk_collective_io, each process reports independent I/O
- *
+ *
* TEST_ACTUAL_IO_MULTI_CHUNK_COL:
* H5D_mpi_chunk_collective_io, each process reports collective I/O
*
@@ -2908,7 +2916,7 @@ none_selection_chunk(void)
* collective, the rest report independent I/O
*
* TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_IND:
- * Same test TEST_ACTUAL_IO_MULTI_CHUNK_IND.
+ * Same test TEST_ACTUAL_IO_MULTI_CHUNK_IND.
* Set directly go to multi-chunk-io without num threshold calc.
* TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_COL:
* Same test TEST_ACTUAL_IO_MULTI_CHUNK_COL.
@@ -2933,20 +2941,20 @@ none_selection_chunk(void)
*
* Note: DIRECT_MULTI_CHUNK_MIX and DIRECT_MULTI_CHUNK_MIX_DISAGREE
* is not needed as they are covered by DIRECT_CHUNK_MIX and
- * MULTI_CHUNK_MIX_DISAGREE cases. _DIRECT_ cases are only for testing
+ * MULTI_CHUNK_MIX_DISAGREE cases. _DIRECT_ cases are only for testing
* path way to multi-chunk-io by H5FD_MPIO_CHUNK_MULTI_IO insted of num-threshold.
*
* Modification:
- * - Refctore to remove multi-chunk-without-opimization test and update for
- * testing direct to multi-chunk-io
+ * - Refctore to remove multi-chunk-without-opimization test and update for
+ * testing direct to multi-chunk-io
* Programmer: Jonathan Kim
* Date: 2012-10-10
*
- *
+ *
* Programmer: Jacob Gruber
* Date: 2011-04-06
*/
-static void
+static void
test_actual_io_mode(int selection_mode) {
H5D_mpio_actual_chunk_opt_mode_t actual_chunk_opt_mode_write = -1;
H5D_mpio_actual_chunk_opt_mode_t actual_chunk_opt_mode_read = -1;
@@ -2960,7 +2968,7 @@ test_actual_io_mode(int selection_mode) {
hbool_t multi_chunk_io;
hbool_t is_chunked;
hbool_t is_collective;
- int mpi_size = -1;
+ int mpi_size = -1;
int mpi_rank = -1;
int length;
int * buffer;
@@ -2985,12 +2993,12 @@ test_actual_io_mode(int selection_mode) {
hsize_t block[RANK];
char message[256];
herr_t ret;
-
+
/* Set up some flags to make some future if statements slightly more readable */
direct_multi_chunk_io = (
selection_mode == TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_IND ||
selection_mode == TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_COL );
-
+
/* Note: RESET performs the same tests as MULTI_CHUNK_MIX_DISAGREE and then
* tests independent I/O
*/
@@ -3000,11 +3008,11 @@ test_actual_io_mode(int selection_mode) {
selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_MIX ||
selection_mode == TEST_ACTUAL_IO_MULTI_CHUNK_MIX_DISAGREE ||
selection_mode == TEST_ACTUAL_IO_RESET );
-
+
is_chunked = (
selection_mode != TEST_ACTUAL_IO_CONTIGUOUS &&
selection_mode != TEST_ACTUAL_IO_NO_COLLECTIVE);
-
+
is_collective = selection_mode != TEST_ACTUAL_IO_NO_COLLECTIVE;
/* Set up MPI parameters */
@@ -3012,7 +3020,7 @@ test_actual_io_mode(int selection_mode) {
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Barrier(MPI_COMM_WORLD);
-
+
HDassert(mpi_size >= 1);
mpi_comm = MPI_COMM_WORLD;
@@ -3029,7 +3037,7 @@ test_actual_io_mode(int selection_mode) {
fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
VRFY((fid >= 0), "H5Fcreate succeeded");
- /* Create the basic Space */
+ /* Create the basic Space */
dims[0] = dim0;
dims[1] = dim1;
sid = H5Screate_simple (RANK, dims, NULL);
@@ -3057,10 +3065,10 @@ test_actual_io_mode(int selection_mode) {
file_space = H5Dget_space(dataset);
VRFY((file_space >= 0), "H5Dget_space succeeded");
- /* Choose a selection method based on the type of I/O we want to occur,
+ /* Choose a selection method based on the type of I/O we want to occur,
* and also set up some selection-dependeent test info. */
switch(selection_mode) {
-
+
/* Independent I/O with optimization */
case TEST_ACTUAL_IO_MULTI_CHUNK_IND:
case TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_IND:
@@ -3069,7 +3077,7 @@ test_actual_io_mode(int selection_mode) {
* independent.
*/
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
-
+
test_name = "Multi Chunk - Independent";
actual_chunk_opt_mode_expected = H5D_MPIO_MULTI_CHUNK;
actual_io_mode_expected = H5D_MPIO_CHUNK_INDEPENDENT;
@@ -3083,7 +3091,7 @@ test_actual_io_mode(int selection_mode) {
* selections to each chunk, the operation is purely collective.
*/
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
-
+
test_name = "Multi Chunk - Collective";
actual_chunk_opt_mode_expected = H5D_MPIO_MULTI_CHUNK;
if(mpi_size > 1)
@@ -3091,7 +3099,7 @@ test_actual_io_mode(int selection_mode) {
else
actual_io_mode_expected = H5D_MPIO_CHUNK_INDEPENDENT;
break;
-
+
/* Mixed I/O with optimization */
case TEST_ACTUAL_IO_MULTI_CHUNK_MIX:
/* A chunk will be assigned collective I/O only if it is selected by each
@@ -3102,7 +3110,7 @@ test_actual_io_mode(int selection_mode) {
* assigned independent I/O. Each process will access one chunk collectively
* and at least one chunk independently, reporting mixed I/O.
*/
-
+
if(mpi_rank == 0) {
/* Select the first column */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYCOL);
@@ -3117,7 +3125,7 @@ test_actual_io_mode(int selection_mode) {
start[0] = 0;
start[1] = mpi_rank*block[1];
}
-
+
test_name = "Multi Chunk - Mixed";
actual_chunk_opt_mode_expected = H5D_MPIO_MULTI_CHUNK;
actual_io_mode_expected = H5D_MPIO_CHUNK_MIXED;
@@ -3127,7 +3135,7 @@ test_actual_io_mode(int selection_mode) {
* performed. To acheive this, we have RESET perform collective I/O (which would change
* the values from the defaults) followed by independent I/O (which should report the
* default values). RESET doesn't need to have a unique selection, so we reuse
- * MULTI_CHUMK_MIX_DISAGREE, which was chosen because it is a complex case that works
+ * MULTI_CHUMK_MIX_DISAGREE, which was chosen because it is a complex case that works
* on all builds. The independent section of RESET can be found at the end of this function.
*/
case TEST_ACTUAL_IO_RESET:
@@ -3136,7 +3144,7 @@ test_actual_io_mode(int selection_mode) {
case TEST_ACTUAL_IO_MULTI_CHUNK_MIX_DISAGREE:
/* A chunk will be assigned collective I/O only if it is selected by each
* process. To get mixed I/O with disagreement, assign process n to the
- * first chunk and the nth chunk. The first chunk, selected by all, is
+ * first chunk and the nth chunk. The first chunk, selected by all, is
* assgigned collective I/O, while each other process gets independent I/O.
* Since the root process with only access the first chunk, it will report
* collective I/O. The subsequent processes will access the first chunk
@@ -3158,13 +3166,13 @@ test_actual_io_mode(int selection_mode) {
start[0] = 0;
start[1] = mpi_rank*block[1];
}
-
+
/* If the testname was not already set by the RESET case */
if (selection_mode == TEST_ACTUAL_IO_RESET)
test_name = "RESET";
else
test_name = "Multi Chunk - Mixed (Disagreement)";
-
+
actual_chunk_opt_mode_expected = H5D_MPIO_MULTI_CHUNK;
if(mpi_size > 1) {
if(mpi_rank == 0)
@@ -3174,14 +3182,14 @@ test_actual_io_mode(int selection_mode) {
}
else
actual_io_mode_expected = H5D_MPIO_CHUNK_INDEPENDENT;
-
- break;
+
+ break;
/* Linked Chunk I/O */
- case TEST_ACTUAL_IO_LINK_CHUNK:
+ case TEST_ACTUAL_IO_LINK_CHUNK:
/* Nothing special; link chunk I/O is forced in the dxpl settings. */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
-
+
test_name = "Link Chunk";
actual_chunk_opt_mode_expected = H5D_MPIO_LINK_CHUNK;
actual_io_mode_expected = H5D_MPIO_CHUNK_COLLECTIVE;
@@ -3192,7 +3200,7 @@ test_actual_io_mode(int selection_mode) {
/* A non overlapping, regular selection in a contiguous dataset leads to
* collective I/O */
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
-
+
test_name = "Contiguous";
actual_chunk_opt_mode_expected = H5D_MPIO_NO_CHUNK_OPTIMIZATION;
actual_io_mode_expected = H5D_MPIO_CONTIGUOUS_COLLECTIVE;
@@ -3200,7 +3208,7 @@ test_actual_io_mode(int selection_mode) {
case TEST_ACTUAL_IO_NO_COLLECTIVE:
slab_set(mpi_rank, mpi_size, start, count, stride, block, BYROW);
-
+
test_name = "Independent";
actual_chunk_opt_mode_expected = H5D_MPIO_NO_CHUNK_OPTIMIZATION;
actual_io_mode_expected = H5D_MPIO_NO_COLLECTIVE;
@@ -3215,13 +3223,13 @@ test_actual_io_mode(int selection_mode) {
ret = H5Sselect_hyperslab(file_space, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
-
+
/* Create a memory dataspace mirroring the dataset and select the same hyperslab
- * as in the file space.
+ * as in the file space.
*/
mem_space = H5Screate_simple (RANK, dims, NULL);
VRFY((mem_space >= 0), "mem_space created");
-
+
ret = H5Sselect_hyperslab(mem_space, H5S_SELECT_SET, start, stride, count, block);
VRFY((ret >= 0), "H5Sset_hyperslab succeeded");
@@ -3230,22 +3238,22 @@ test_actual_io_mode(int selection_mode) {
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
- for(i = 0; i < length; i++)
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
+ for(i = 0; i < length; i++)
buffer[i] = i;
/* Set up the dxpl for the write */
dxpl_write = H5Pcreate(H5P_DATASET_XFER);
VRFY((dxpl_write >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded");
-
+
/* Set collective I/O properties in the dxpl. */
if(is_collective) {
/* Request collective I/O */
ret = H5Pset_dxpl_mpio(dxpl_write, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
-
- /* Set the threshold number of processes per chunk to twice mpi_size.
- * This will prevent the threshold from ever being met, thus forcing
+
+ /* Set the threshold number of processes per chunk to twice mpi_size.
+ * This will prevent the threshold from ever being met, thus forcing
* multi chunk io instead of link chunk io.
* This is via deault.
*/
@@ -3283,12 +3291,12 @@ test_actual_io_mode(int selection_mode) {
ret = H5Pget_mpio_actual_chunk_opt_mode(dxpl_write, &actual_chunk_opt_mode_write);
VRFY((ret >= 0), "retriving actual chunk opt mode succeeded" );
-
+
/* Read */
ret = H5Dread(dataset, data_type, mem_space, file_space, dxpl_read, buffer);
if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout);
VRFY((ret >= 0), "H5Dread() dataset multichunk read succeeded");
-
+
/* Retreive Actual io values */
ret = H5Pget_mpio_actual_io_mode(dxpl_read, &actual_io_mode_read);
VRFY((ret >= 0), "retriving actual io mode succeeded" );
@@ -3304,9 +3312,9 @@ test_actual_io_mode(int selection_mode) {
/* Test values */
if(actual_chunk_opt_mode_expected != (H5D_mpio_actual_chunk_opt_mode_t) -1 && actual_io_mode_expected != (H5D_mpio_actual_io_mode_t) -1) {
- sprintf(message, "Actual Chunk Opt Mode has the correct value for %s.\n",test_name);
+ HDsprintf(message, "Actual Chunk Opt Mode has the correct value for %s.\n",test_name);
VRFY((actual_chunk_opt_mode_write == actual_chunk_opt_mode_expected), message);
- sprintf(message, "Actual IO Mode has the correct value for %s.\n",test_name);
+ HDsprintf(message, "Actual IO Mode has the correct value for %s.\n",test_name);
VRFY((actual_io_mode_write == actual_io_mode_expected), message);
} else {
HDfprintf(stderr, "%s %d -> (%d,%d)\n", test_name, mpi_rank,
@@ -3338,7 +3346,7 @@ test_actual_io_mode(int selection_mode) {
"actual_chunk_opt_mode has correct value for reset write (independent)");
VRFY(actual_io_mode_write == H5D_MPIO_NO_COLLECTIVE,
"actual_io_mode has correct value for reset write (independent)");
-
+
/* Read */
ret = H5Dread(dataset, data_type, H5S_ALL, H5S_ALL, dxpl_read, buffer);
VRFY((ret >= 0), "H5Dwrite() dataset multichunk write succeeded");
@@ -3348,7 +3356,7 @@ test_actual_io_mode(int selection_mode) {
VRFY( (ret >= 0), "retriving actual io mode succeeded" );
ret = H5Pget_mpio_actual_chunk_opt_mode(dxpl_read, &actual_chunk_opt_mode_read);
VRFY( (ret >= 0), "retriving actual chunk opt mode succeeded" );
-
+
VRFY(actual_chunk_opt_mode_read == H5D_MPIO_NO_CHUNK_OPTIMIZATION,
"actual_chunk_opt_mode has correct value for reset read (independent)");
VRFY(actual_io_mode_read == H5D_MPIO_NO_COLLECTIVE,
@@ -3370,10 +3378,10 @@ test_actual_io_mode(int selection_mode) {
return;
}
-
+
/* Function: actual_io_mode_tests
*
- * Purpose: Tests all possible cases of the actual_io_mode property.
+ * Purpose: Tests all possible cases of the actual_io_mode property.
*
* Programmer: Jacob Gruber
* Date: 2011-04-06
@@ -3384,10 +3392,10 @@ actual_io_mode_tests(void) {
int mpi_rank = -1;
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
MPI_Comm_size(MPI_COMM_WORLD, &mpi_rank);
-
+
test_actual_io_mode(TEST_ACTUAL_IO_NO_COLLECTIVE);
-
- /*
+
+ /*
* Test multi-chunk-io via proc_num threshold
*/
test_actual_io_mode(TEST_ACTUAL_IO_MULTI_CHUNK_IND);
@@ -3398,10 +3406,10 @@ actual_io_mode_tests(void) {
test_actual_io_mode(TEST_ACTUAL_IO_MULTI_CHUNK_MIX);
else
HDfprintf(stdout, "Multi Chunk Mixed test requires 3 proceses minimum\n");
-
+
test_actual_io_mode(TEST_ACTUAL_IO_MULTI_CHUNK_MIX_DISAGREE);
- /*
+ /*
* Test multi-chunk-io via setting direct property
*/
test_actual_io_mode(TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_IND);
@@ -3409,31 +3417,31 @@ actual_io_mode_tests(void) {
test_actual_io_mode(TEST_ACTUAL_IO_LINK_CHUNK);
test_actual_io_mode(TEST_ACTUAL_IO_CONTIGUOUS);
-
+
test_actual_io_mode(TEST_ACTUAL_IO_RESET);
return;
}
-/*
+/*
* Function: test_no_collective_cause_mode
*
- * Purpose:
- * tests cases for broken collective I/O and checks that the
+ * Purpose:
+ * tests cases for broken collective I/O and checks that the
* H5Pget_mpio_no_collective_cause properties in the DXPL have the correct values.
*
- * Input:
+ * Input:
* selection_mode: various mode to cause broken collective I/O
* Note: Originally, each TEST case is supposed to be used alone.
* After some discussion, this is updated to take multiple TEST cases
- * with '|'. However there is no error check for any of combined
+ * with '|'. However there is no error check for any of combined
* test cases, so a tester is responsible to understand and feed
* proper combination of TESTs if needed.
*
- *
+ *
* TEST_COLLECTIVE:
* Test for regular collective I/O without cause of breaking.
* Just to test normal behavior.
- *
+ *
* TEST_SET_INDEPENDENT:
* Test for Independent I/O as the cause of breaking collective I/O.
*
@@ -3445,7 +3453,7 @@ actual_io_mode_tests(void) {
*
* TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES:
* Test for NULL dataspace as the cause of breaking collective I/O.
- *
+ *
* TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT:
* Test for Compact layout as the cause of breaking collective I/O.
*
@@ -3454,17 +3462,17 @@ actual_io_mode_tests(void) {
*
* TEST_FILTERS:
* Test for using filter (checksum) as the cause of breaking collective I/O.
- * Note: TEST_FILTERS mode will not work until H5Dcreate and H5write is supported for mpio and filter feature. Use test_no_collective_cause_mode_filter() function instead.
+ * Note: TEST_FILTERS mode will not work until H5Dcreate and H5write is supported for mpio and filter feature. Use test_no_collective_cause_mode_filter() function instead.
+ *
*
- *
* Programmer: Jonathan Kim
* Date: Aug, 2012
*/
#define DSET_NOCOLCAUSE "nocolcause"
#define NELM 2
#define FILE_EXTERNAL "nocolcause_extern.data"
-static void
-test_no_collective_cause_mode(int selection_mode)
+static void
+test_no_collective_cause_mode(int selection_mode)
{
uint32_t no_collective_cause_local_write = 0;
uint32_t no_collective_cause_local_read = 0;
@@ -3478,7 +3486,7 @@ test_no_collective_cause_mode(int selection_mode)
const char * test_name;
hbool_t is_chunked=1;
hbool_t is_independent=0;
- int mpi_size = -1;
+ int mpi_size = -1;
int mpi_rank = -1;
int length;
int * buffer;
@@ -3502,7 +3510,7 @@ test_no_collective_cause_mode(int selection_mode)
H5Z_filter_t filter_info;
#endif /* LATER */
/* set to global value as default */
- int l_facc_type = facc_type;
+ int l_facc_type = facc_type;
char message[256];
/* Set up MPI parameters */
@@ -3564,7 +3572,7 @@ test_no_collective_cause_mode(int selection_mode)
sid = H5Screate_simple (RANK, dims, NULL);
VRFY((sid >= 0), "H5Screate_simple succeeded");
}
-
+
filename = (const char *)GetTestParameters();
HDassert(filename != NULL);
@@ -3589,20 +3597,19 @@ test_no_collective_cause_mode(int selection_mode)
/* Create the dataset */
- dataset = H5Dcreate2(fid, "nocolcause", data_type, sid, H5P_DEFAULT,
- dcpl, H5P_DEFAULT);
+ dataset = H5Dcreate2(fid, "nocolcause", data_type, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT);
VRFY((dataset >= 0), "H5Dcreate2() dataset succeeded");
- /*
- * Set expected causes and some tweaks based on the type of test
+ /*
+ * Set expected causes and some tweaks based on the type of test
*/
if (selection_mode & TEST_DATATYPE_CONVERSION) {
test_name = "Broken Collective I/O - Datatype Conversion";
no_collective_cause_local_expected |= H5D_MPIO_DATATYPE_CONVERSION;
no_collective_cause_global_expected |= H5D_MPIO_DATATYPE_CONVERSION;
/* set different sign to trigger type conversion */
- data_type = H5T_NATIVE_UINT;
+ data_type = H5T_NATIVE_UINT;
}
if (selection_mode & TEST_DATA_TRANSFORMS) {
@@ -3667,14 +3674,14 @@ test_no_collective_cause_mode(int selection_mode)
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
- for(i = 0; i < length; i++)
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
+ for(i = 0; i < length; i++)
buffer[i] = i;
/* Set up the dxpl for the write */
dxpl_write = H5Pcreate(H5P_DATASET_XFER);
VRFY((dxpl_write >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded");
-
+
if(is_independent) {
/* Set Independent I/O */
ret = H5Pset_dxpl_mpio(dxpl_write, H5FD_MPIO_INDEPENDENT);
@@ -3684,17 +3691,17 @@ test_no_collective_cause_mode(int selection_mode)
/* Set Collective I/O */
ret = H5Pset_dxpl_mpio(dxpl_write, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
-
+
}
if (selection_mode & TEST_DATA_TRANSFORMS) {
- ret = H5Pset_data_transform (dxpl_write, "x+1");
+ ret = H5Pset_data_transform (dxpl_write, "x+1");
VRFY((ret >= 0), "H5Pset_data_transform succeeded");
}
/*---------------------
* Test Write access
- *---------------------*/
+ *---------------------*/
/* Write */
ret = H5Dwrite(dataset, data_type, mem_space, file_space, dxpl_write, buffer);
@@ -3709,7 +3716,7 @@ test_no_collective_cause_mode(int selection_mode)
/*---------------------
* Test Read access
- *---------------------*/
+ *---------------------*/
/* Make a copy of the dxpl to test the read operation */
dxpl_read = H5Pcopy(dxpl_write);
@@ -3720,7 +3727,7 @@ test_no_collective_cause_mode(int selection_mode)
if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout);
VRFY((ret >= 0), "H5Dread() dataset multichunk read succeeded");
-
+
/* Get the cause of broken collective I/O */
ret = H5Pget_mpio_no_collective_cause (dxpl_read, &no_collective_cause_local_read, &no_collective_cause_global_read);
VRFY((ret >= 0), "retriving no collective cause succeeded" );
@@ -3730,13 +3737,13 @@ test_no_collective_cause_mode(int selection_mode)
"reading and writing are the same for local cause of Broken Collective I/O");
VRFY((no_collective_cause_global_read == no_collective_cause_global_write),
"reading and writing are the same for global cause of Broken Collective I/O");
-
+
/* Test values */
- memset (message, 0, sizeof (message));
- sprintf(message, "Local cause of Broken Collective I/O has the correct value for %s.\n",test_name);
+ HDmemset (message, 0, sizeof (message));
+ HDsprintf(message, "Local cause of Broken Collective I/O has the correct value for %s.\n",test_name);
VRFY((no_collective_cause_local_write == no_collective_cause_local_expected), message);
- memset (message, 0, sizeof (message));
- sprintf(message, "Global cause of Broken Collective I/O has the correct value for %s.\n",test_name);
+ HDmemset (message, 0, sizeof (message));
+ HDsprintf(message, "Global cause of Broken Collective I/O has the correct value for %s.\n",test_name);
VRFY((no_collective_cause_global_write == no_collective_cause_global_expected), message);
/* Release some resources */
@@ -3768,28 +3775,28 @@ test_no_collective_cause_mode(int selection_mode)
}
-/*
+/*
* Function: test_no_collective_cause_mode_filter
*
- * Purpose:
- * Test specific for using filter as a caus of broken collective I/O and
+ * Purpose:
+ * Test specific for using filter as a caus of broken collective I/O and
* checks that the H5Pget_mpio_no_collective_cause properties in the DXPL
* have the correct values.
*
- * NOTE:
- * This is a temporary function.
+ * NOTE:
+ * This is a temporary function.
* test_no_collective_cause_mode(TEST_FILTERS) will replace this when
* H5Dcreate and H5write support for mpio and filter feature.
*
- * Input:
+ * Input:
* TEST_FILTERS_READ:
* Test for using filter (checksum) as the cause of breaking collective I/O.
- *
+ *
* Programmer: Jonathan Kim
* Date: Aug, 2012
*/
-static void
-test_no_collective_cause_mode_filter(int selection_mode)
+static void
+test_no_collective_cause_mode_filter(int selection_mode)
{
uint32_t no_collective_cause_local_read = 0;
uint32_t no_collective_cause_local_expected = 0;
@@ -3799,7 +3806,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
const char * filename;
const char * test_name;
hbool_t is_chunked=1;
- int mpi_size = -1;
+ int mpi_size = -1;
int mpi_rank = -1;
int length;
int * buffer;
@@ -3829,7 +3836,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
MPI_Barrier(MPI_COMM_WORLD);
-
+
HDassert(mpi_size >= 1);
mpi_comm = MPI_COMM_WORLD;
@@ -3855,12 +3862,12 @@ test_no_collective_cause_mode_filter(int selection_mode)
VRFY(0, "Unexpected mode, only test for TEST_FILTERS_READ.");
}
- /* Create the basic Space */
+ /* Create the basic Space */
dims[0] = dim0;
dims[1] = dim1;
sid = H5Screate_simple (RANK, dims, NULL);
VRFY((sid >= 0), "H5Screate_simple succeeded");
-
+
filename = (const char *)GetTestParameters();
HDassert(filename != NULL);
@@ -3883,8 +3890,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
/* Create the dataset */
- dataset = H5Dcreate2(fid, DSET_NOCOLCAUSE, data_type, sid, H5P_DEFAULT,
- dcpl, H5P_DEFAULT);
+ dataset = H5Dcreate2(fid, DSET_NOCOLCAUSE, data_type, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT);
VRFY((dataset >= 0), "H5Dcreate2() dataset succeeded");
#ifdef LATER /* fletcher32 */
@@ -3907,16 +3913,16 @@ test_no_collective_cause_mode_filter(int selection_mode)
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
- for(i = 0; i < length; i++)
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
+ for(i = 0; i < length; i++)
buffer[i] = i;
/* Set up the dxpl for the write */
dxpl = H5Pcreate(H5P_DATASET_XFER);
VRFY((dxpl >= 0), "H5Pcreate(H5P_DATASET_XFER) succeeded");
-
+
if (selection_mode == TEST_FILTERS_READ) {
- /* To test read in collective I/O mode , write in independent mode
+ /* To test read in collective I/O mode , write in independent mode
* because write fails with mpio + filter */
ret = H5Pset_dxpl_mpio(dxpl, H5FD_MPIO_INDEPENDENT);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
@@ -3926,7 +3932,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
ret = H5Pset_dxpl_mpio(dxpl, H5FD_MPIO_COLLECTIVE);
VRFY((ret >= 0), "H5Pset_dxpl_mpio succeeded");
}
-
+
/* Write */
ret = H5Dwrite(dataset, data_type, mem_space, file_space, dxpl, buffer);
@@ -3967,17 +3973,17 @@ test_no_collective_cause_mode_filter(int selection_mode)
if(ret < 0) H5Eprint2(H5E_DEFAULT, stdout);
VRFY((ret >= 0), "H5Dread() dataset multichunk read succeeded");
-
+
/* Get the cause of broken collective I/O */
ret = H5Pget_mpio_no_collective_cause (dxpl, &no_collective_cause_local_read, &no_collective_cause_global_read);
VRFY((ret >= 0), "retriving no collective cause succeeded" );
/* Test values */
- memset (message, 0, sizeof (message));
- sprintf(message, "Local cause of Broken Collective I/O has the correct value for %s.\n",test_name);
+ HDmemset (message, 0, sizeof (message));
+ HDsprintf(message, "Local cause of Broken Collective I/O has the correct value for %s.\n",test_name);
VRFY((no_collective_cause_local_read == (uint32_t)no_collective_cause_local_expected), message);
- memset (message, 0, sizeof (message));
- sprintf(message, "Global cause of Broken Collective I/O has the correct value for %s.\n",test_name);
+ HDmemset (message, 0, sizeof (message));
+ HDsprintf(message, "Global cause of Broken Collective I/O has the correct value for %s.\n",test_name);
VRFY((no_collective_cause_global_read == (uint32_t)no_collective_cause_global_expected), message);
/* Release some resources */
@@ -4003,16 +4009,16 @@ test_no_collective_cause_mode_filter(int selection_mode)
/* Function: no_collective_cause_tests
*
- * Purpose: Tests cases for broken collective IO.
+ * Purpose: Tests cases for broken collective IO.
*
* Programmer: Jonathan Kim
* Date: Aug, 2012
*/
-void
-no_collective_cause_tests(void)
+void
+no_collective_cause_tests(void)
{
- /*
- * Test individual cause
+ /*
+ * Test individual cause
*/
test_no_collective_cause_mode (TEST_COLLECTIVE);
test_no_collective_cause_mode (TEST_SET_INDEPENDENT);
@@ -4022,15 +4028,15 @@ no_collective_cause_tests(void)
test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT);
test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL);
#ifdef LATER /* fletcher32 */
- /* TODO: use this instead of below TEST_FILTERS_READ when H5Dcreate and
+ /* TODO: use this instead of below TEST_FILTERS_READ when H5Dcreate and
* H5Dwrite is ready for mpio + filter feature.
*/
/* test_no_collective_cause_mode (TEST_FILTERS); */
test_no_collective_cause_mode_filter (TEST_FILTERS_READ);
-#endif /* LATER */
+#endif /* LATER */
- /*
- * Test combined causes
+ /*
+ * Test combined causes
*/
test_no_collective_cause_mode (TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL | TEST_DATATYPE_CONVERSION);
test_no_collective_cause_mode (TEST_DATATYPE_CONVERSION | TEST_DATA_TRANSFORMS);
@@ -4054,22 +4060,22 @@ void
dataset_atomicity(void)
{
hid_t fid; /* HDF5 file ID */
- hid_t acc_tpl; /* File access templates */
- hid_t sid; /* Dataspace ID */
- hid_t dataset1; /* Dataset IDs */
- hsize_t dims[RANK]; /* dataset dim sizes */
- int *write_buf = NULL; /* data buffer */
- int *read_buf = NULL; /* data buffer */
+ hid_t acc_tpl; /* File access templates */
+ hid_t sid; /* Dataspace ID */
+ hid_t dataset1; /* Dataset IDs */
+ hsize_t dims[RANK]; /* dataset dim sizes */
+ int *write_buf = NULL; /* data buffer */
+ int *read_buf = NULL; /* data buffer */
int buf_size;
hid_t dataset2;
- hid_t file_dataspace; /* File dataspace ID */
- hid_t mem_dataspace; /* Memory dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* Memory dataspace ID */
hsize_t start[RANK];
hsize_t stride[RANK];
hsize_t count[RANK];
hsize_t block[RANK];
const char *filename;
- herr_t ret; /* Generic return value */
+ herr_t ret; /* Generic return value */
int mpi_size, mpi_rank;
int i, j, k;
hbool_t atomicity = FALSE;
@@ -4079,11 +4085,11 @@ dataset_atomicity(void)
dim0 = 64; dim1 = 32;
filename = GetTestParameters();
if (facc_type != FACC_MPIO) {
- printf("Atomicity tests will not work without the MPIO VFD\n");
+ HDprintf("Atomicity tests will not work without the MPIO VFD\n");
return;
}
if(VERBOSE_MED)
- printf("atomic writes to file %s\n", filename);
+ HDprintf("atomic writes to file %s\n", filename);
/* set up MPI parameters */
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
@@ -4134,7 +4140,7 @@ dataset_atomicity(void)
H5P_DEFAULT, write_buf);
VRFY((ret >= 0), "H5Dwrite dataset2 succeeded");
}
-
+
ret = H5Dclose(dataset1);
VRFY((ret >= 0), "H5Dclose succeeded");
ret = H5Dclose(dataset2);
@@ -4149,8 +4155,8 @@ dataset_atomicity(void)
/* make sure setting atomicity fails on a serial file ID */
/* file locking allows only one file open (serial) for writing */
if(MAINPROCESS){
- fid=H5Fopen(filename,H5F_ACC_RDWR,H5P_DEFAULT);
- VRFY((fid >= 0), "H5Fopen succeeed");
+ fid=H5Fopen(filename,H5F_ACC_RDWR,H5P_DEFAULT);
+ VRFY((fid >= 0), "H5Fopen succeeed");
}
/* should fail */
@@ -4158,8 +4164,8 @@ dataset_atomicity(void)
VRFY((ret == FAIL), "H5Fset_mpi_atomicity failed");
if(MAINPROCESS){
- ret = H5Fclose(fid);
- VRFY((ret >= 0), "H5Fclose succeeded");
+ ret = H5Fclose(fid);
+ VRFY((ret >= 0), "H5Fclose succeeded");
}
MPI_Barrier (comm);
@@ -4215,23 +4221,23 @@ dataset_atomicity(void)
if(VERBOSE_MED) {
i=0;j=0;k=0;
for (i=0 ; i<dim0 ; i++) {
- printf ("\n");
+ HDprintf ("\n");
for (j=0 ; j<dim1 ; j++)
- printf ("%d ", read_buf[k++]);
+ HDprintf ("%d ", read_buf[k++]);
}
}
/* The processes that read the dataset must either read all values
as 0 (read happened before process 0 wrote to dataset 1), or 5
(read happened after process 0 wrote to dataset 1) */
- if (0 != mpi_rank) {
+ if (0 != mpi_rank) {
int compare = read_buf[0];
- VRFY((compare == 0 || compare == 5),
+ VRFY((compare == 0 || compare == 5),
"Atomicity Test Failed Process %d: Value read should be 0 or 5\n");
for (i=1; i<buf_size; i++) {
if (read_buf[i] != compare) {
- printf("Atomicity Test Failed Process %d: read_buf[%d] is %d, should be %d\n", mpi_rank, i, read_buf[i], compare);
+ HDprintf("Atomicity Test Failed Process %d: read_buf[%d] is %d, should be %d\n", mpi_rank, i, read_buf[i], compare);
nerrors ++;
}
}
@@ -4313,17 +4319,17 @@ dataset_atomicity(void)
if (mpi_rank == 1) {
i=0;j=0;k=0;
for (i=0 ; i<dim0 ; i++) {
- printf ("\n");
+ HDprintf ("\n");
for (j=0 ; j<dim1 ; j++)
- printf ("%d ", read_buf[k++]);
+ HDprintf ("%d ", read_buf[k++]);
}
- printf ("\n");
+ HDprintf ("\n");
}
}
/* The processes that read the dataset must either read all values
as 5 (read happened after process 0 wrote to dataset 1) */
- if (0 != mpi_rank) {
+ if (0 != mpi_rank) {
int compare;
i=0;j=0;k=0;
@@ -4347,7 +4353,7 @@ dataset_atomicity(void)
continue;
}
else if (compare != read_buf[k]) {
- printf("Atomicity Test Failed Process %d: read_buf[%d] is %d, should be %d\n", mpi_rank, k, read_buf[k], compare);
+ HDprintf("Atomicity Test Failed Process %d: read_buf[%d] is %d, should be %d\n", mpi_rank, k, read_buf[k], compare);
nerrors++;
}
k ++;
@@ -4378,8 +4384,8 @@ dataset_atomicity(void)
* Programmer: Quincey Koziol
* Date: April, 2013
*/
-void
-test_dense_attr(void)
+void
+test_dense_attr(void)
{
int mpi_size, mpi_rank;
hid_t fpid, fid;
@@ -4417,7 +4423,7 @@ test_dense_attr(void)
status = H5Pclose(gpid);
VRFY((status >= 0), "H5Pclose succeeded");
- atFileSpace = H5Screate_simple(1, atDims, NULL);
+ atFileSpace = H5Screate_simple(1, atDims, NULL);
VRFY((atFileSpace > 0), "H5Screate_simple succeeded");
atid = H5Acreate2(gid, "bar", H5T_STD_U64LE, atFileSpace, H5P_DEFAULT, H5P_DEFAULT);
VRFY((atid > 0), "H5Acreate succeeded");
generated by cgit v0.12 at 2024-07-08 09:54:27 (GMT)