merge and fix conflict

12 files changed, 40 insertions, 53 deletions

diff --git a/testpar/CMakeLists.txt b/testpar/CMakeLists.txt
index 9795c65..3e4957d 100644
--- a/testpar/CMakeLists.txt
+++ b/testpar/CMakeLists.txt
@@ -79,4 +79,6 @@ foreach (h5_testp ${H5P_TESTS})
   ADD_H5P_EXE(${h5_testp})
 endforeach ()
 
-include (CMakeTests.cmake)
+if (HDF5_TEST_PARALLEL)
+  include (CMakeTests.cmake)
+endif ()
diff --git a/testpar/t_2Gio.c b/testpar/t_2Gio.c
index d48dfca..a49fefe 100644
--- a/testpar/t_2Gio.c
+++ b/testpar/t_2Gio.c
@@ -552,7 +552,7 @@ dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[]
 #define H5FILE_NAME   "hugefile.h5"
 #define DATASETNAME 	"dataset"
 
-int MpioTest2G( MPI_Comm comm )
+static int MpioTest2G( MPI_Comm comm )
 {
     /*
      * HDF5 APIs definitions
@@ -3891,8 +3891,6 @@ actual_io_mode_tests(void) {
  * Programmer: Jonathan Kim
  * Date: Aug, 2012
  */
-#define DSET_NOCOLCAUSE "nocolcause"
-#define NELM          2
 #define FILE_EXTERNAL "nocolcause_extern.data"
 static void
 test_no_collective_cause_mode(int selection_mode)
diff --git a/testpar/t_bigio.c b/testpar/t_bigio.c
index 12c1023..b681a2a 100644
--- a/testpar/t_bigio.c
+++ b/testpar/t_bigio.c
@@ -27,7 +27,6 @@ const char *FILENAME[3]={ "bigio_test.h5",
 #define DATASET2 "DSET2"
 #define DATASET3 "DSET3"
 #define DATASET4 "DSET4"
-#define DATASET5 "DSET5"
 #define DXFER_COLLECTIVE_IO 0x1  /* Collective IO*/
 #define DXFER_INDEPENDENT_IO 0x2 /* Independent IO collectively */
 #define DXFER_BIGCOUNT (1 < 29)
diff --git a/testpar/t_cache.c b/testpar/t_cache.c
index ebb8e33..058cde6 100644
--- a/testpar/t_cache.c
+++ b/testpar/t_cache.c
@@ -28,7 +28,7 @@
 #include "H5Fpkg.h"
 #include "H5Iprivate.h"
 #include "H5MFprivate.h"
-
+#include "H5private.h"
 
 #define BASE_ADDR               (haddr_t)1024
 
@@ -38,7 +38,6 @@ int        failures = 0;
 hbool_t        verbose = TRUE; /* used to control error messages */
 
 #define NFILENAME 2
-#define PARATESTFILE filenames[0]
 const char *FILENAME[NFILENAME]={"CacheTestDummy", NULL};
 #ifndef PATH_MAX
 #define PATH_MAX    512
@@ -219,7 +218,9 @@ struct datum data[NUM_DATA_ENTRIES];
 #define STD_VIRT_NUM_DATA_ENTRIES    NUM_DATA_ENTRIES
 #define EXPRESS_VIRT_NUM_DATA_ENTRIES    (NUM_DATA_ENTRIES / 10)
 /* Use a smaller test size to avoid creating huge MPE logfiles. */
+#ifdef H5_HAVE_MPE
 #define MPE_VIRT_NUM_DATA_ENTIES    (NUM_DATA_ENTRIES / 100)
+#endif
 
 int virt_num_data_entries = NUM_DATA_ENTRIES;
 
@@ -2378,7 +2379,7 @@ datum_get_initial_load_size(void *udata_ptr, size_t *image_len_ptr)
  *-------------------------------------------------------------------------
  */
 static void *
-datum_deserialize(const void * image_ptr,
+datum_deserialize(const void H5_ATTR_NDEBUG_UNUSED *image_ptr,
                   H5_ATTR_UNUSED size_t len,
                   void * udata_ptr,
                   hbool_t * dirty_ptr)
@@ -2491,14 +2492,13 @@ datum_image_len(const void *thing, size_t *image_len)
  */
 static herr_t
 datum_serialize(const H5F_t *f,
-                void *image_ptr,
+                void H5_ATTR_NDEBUG_UNUSED *image_ptr,
                 size_t len,
                 void *thing_ptr)
 {
     herr_t ret_value = SUCCEED;
     int idx;
     struct datum * entry_ptr;
-    H5C_t * cache_ptr;
     struct H5AC_aux_t * aux_ptr;
 
     HDassert( thing_ptr );
@@ -2509,11 +2509,8 @@ datum_serialize(const H5F_t *f,
     HDassert( f );
     HDassert( f->shared );
     HDassert( f->shared->cache );
-
-    cache_ptr = f->shared->cache;
-
-    HDassert( cache_ptr->magic == H5C__H5C_T_MAGIC );
-    HDassert( cache_ptr->aux_ptr );
+    HDassert( f->shared->cache->magic == H5C__H5C_T_MAGIC );
+    HDassert( f->shared->cache->aux_ptr );
 
     aux_ptr = (H5AC_aux_t *)(f->shared->cache->aux_ptr);
 
diff --git a/testpar/t_coll_chunk.c b/testpar/t_coll_chunk.c
index 40cc1ca..2d758ba 100644
--- a/testpar/t_coll_chunk.c
+++ b/testpar/t_coll_chunk.c
@@ -620,7 +620,6 @@ coll_chunktest(const char* filename,
   size_t  num_points;           /* for point selection */
   hsize_t *coords = NULL;       /* for point selection */
   hsize_t current_dims;         /* for point selection */
-  int i;
 
   /* set up MPI parameters */
   MPI_Comm_size(comm,&mpi_size);
diff --git a/testpar/t_coll_md_read.c b/testpar/t_coll_md_read.c
index 912388c..c0fe04b 100644
--- a/testpar/t_coll_md_read.c
+++ b/testpar/t_coll_md_read.c
@@ -34,7 +34,6 @@
 
 #define MULTI_CHUNK_IO_ADDRMAP_ISSUE_DIMS 2
 
-#define LINK_CHUNK_IO_SORT_CHUNK_ISSUE_NO_SEL_PROCESS (mpi_rank == mpi_size - 1)
 #define LINK_CHUNK_IO_SORT_CHUNK_ISSUE_DATASET_NAME   "linked_chunk_io_sort_chunk_issue"
 #define LINK_CHUNK_IO_SORT_CHUNK_ISSUE_Y_DIM_SCALE    20000
 #define LINK_CHUNK_IO_SORT_CHUNK_ISSUE_CHUNK_SIZE     1
diff --git a/testpar/t_dset.c b/testpar/t_dset.c
index 6c91a41..87782d0 100644
--- a/testpar/t_dset.c
+++ b/testpar/t_dset.c
@@ -567,7 +567,6 @@ dataset_writeAll(void)
     size_t  num_points;         /* for point selection */
     hsize_t *coords = NULL;     /* for point selection */
     hsize_t current_dims;       /* for point selection */
-    int i;
 
     herr_t ret;             /* Generic return value */
     int mpi_size, mpi_rank;
@@ -1098,7 +1097,6 @@ dataset_readAll(void)
 
     size_t num_points;          /* for point selection */
     hsize_t *coords = NULL;     /* for point selection */
-    hsize_t current_dims;       /* for point selection */
     int i,j,k;
 
     herr_t ret;             /* Generic return value */
@@ -3470,8 +3468,9 @@ actual_io_mode_tests(void) {
  * Programmer: Jonathan Kim
  * Date: Aug, 2012
  */
+#ifdef LATER
 #define DSET_NOCOLCAUSE "nocolcause"
-#define NELM          2
+#endif
 #define FILE_EXTERNAL "nocolcause_extern.data"
 static void
 test_no_collective_cause_mode(int selection_mode)
@@ -3482,7 +3481,6 @@ test_no_collective_cause_mode(int selection_mode)
     uint32_t no_collective_cause_global_write = 0;
     uint32_t no_collective_cause_global_read = 0;
     uint32_t no_collective_cause_global_expected = 0;
-    hsize_t coord[NELM][RANK];
 
     const char  * filename;
     const char  * test_name;
@@ -3797,6 +3795,7 @@ test_no_collective_cause_mode(int selection_mode)
  * Programmer: Jonathan Kim
  * Date: Aug, 2012
  */
+#ifdef LATER
 static void
 test_no_collective_cause_mode_filter(int selection_mode)
 {
@@ -3806,7 +3805,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
     uint32_t no_collective_cause_global_expected = 0;
 
     const char  * filename;
-    const char  * test_name;
+    const char  * test_name = "I/O";
     hbool_t     is_chunked=1;
     int         mpi_size = -1;
     int         mpi_rank = -1;
@@ -4008,6 +4007,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
     HDfree(buffer);
     return;
 }
+#endif
 
 /* Function: no_collective_cause_tests
  *
diff --git a/testpar/t_filter_read.c b/testpar/t_filter_read.c
index 28baed5..cabb51e 100644
--- a/testpar/t_filter_read.c
+++ b/testpar/t_filter_read.c
@@ -215,7 +215,9 @@ test_filter_read(void)
     unsigned    disable_partial_chunk_filters; /* Whether filters are disabled on partial chunks */
     herr_t      hrc;
     const char *filename;
+#ifdef H5_HAVE_FILTER_FLETCHER32
     hsize_t     fletcher32_size;       /* Size of dataset with Fletcher32 checksum */
+#endif
 
 #ifdef H5_HAVE_FILTER_DEFLATE
     hsize_t     deflate_size;       /* Size of dataset with deflate filter */
diff --git a/testpar/t_mdset.c b/testpar/t_mdset.c
index 63ac8d3..ee868ee 100644
--- a/testpar/t_mdset.c
+++ b/testpar/t_mdset.c
@@ -13,6 +13,7 @@
 
 #include "testphdf5.h"
 #include "H5Dprivate.h"
+#include "H5private.h"
 
 #define DIM  2
 #define SIZE 32
@@ -332,7 +333,7 @@ void compact_dataset(void)
     /* Verify data value */
     for(i = 0; i < size; i++)
         for(j = 0; j < size; j++)
-            if(inme[(i * size) + j] != outme[(i * size) + j])
+            if(!H5_DBL_ABS_EQUAL(inme[(i * size) + j], outme[(i * size) + j]))
                 if(err_num++ < MAX_ERR_REPORT || VERBOSE_MED)
                     HDprintf("Dataset Verify failed at [%d][%d]: expect %f, got %f\n", i, j, outme[(i * size) + j], inme[(i * size) + j]);
 
@@ -1959,7 +1960,7 @@ void rr_obj_hdr_flush_confusion_writer(MPI_Comm comm)
     /* private communicator size and rank */
     int mpi_size;
     int mpi_rank;
-    int mrc;        /* mpi error code */
+    int mrc; /* mpi error code */
     /* steps to verify and have been verified */
     int steps = 0;
     int steps_done = 0;
@@ -2477,7 +2478,7 @@ void rr_obj_hdr_flush_confusion_reader(MPI_Comm comm)
 
                     /* compare read data with expected data */
                     for ( j = 0; j < LOCAL_DATA_SIZE; j++ )
-                        if (data_read[j] != data[j]){
+                        if (!H5_DBL_ABS_EQUAL(data_read[j], data[j])){
                             HDfprintf(stdout,
                                     "%0d:%s: Reading datasets value failed in "
                                     "Dataset %d, at position %d: expect %f, got %f.\n",
@@ -2540,7 +2541,7 @@ void rr_obj_hdr_flush_confusion_reader(MPI_Comm comm)
                         VRFY((err >= 0), "H5Aread failed.\n");
                         /* compare read attribute data with expected data */
                         for ( j = 0; j < LOCAL_DATA_SIZE; j++ )
-                            if (att_read[j] != att[j]){
+                            if (!H5_DBL_ABS_EQUAL(att_read[j], att[j])){
                                 HDfprintf(stdout,
                                         "%0d:%s: Mismatched attribute data read in Dataset %d, at position %d: expect %f, got %f.\n",
                                         mpi_rank, fcn_name, i, j, att[j], att_read[j]);
@@ -2592,7 +2593,7 @@ void rr_obj_hdr_flush_confusion_reader(MPI_Comm comm)
                         VRFY((err >= 0), "H5Aread failed.\n");
                         /* compare read attribute data with expected data */
                         for ( j = 0; j < LARGE_ATTR_SIZE; j++ )
-                            if (lg_att_read[j] != lg_att[j]){
+                            if (!H5_DBL_ABS_EQUAL(lg_att_read[j], lg_att[j])){
                                 HDfprintf(stdout,
                                         "%0d:%s: Mismatched large attribute data read in Dataset %d, at position %d: expect %f, got %f.\n",
                                         mpi_rank, fcn_name, i, j, lg_att[j], lg_att_read[j]);
diff --git a/testpar/t_mpi.c b/testpar/t_mpi.c
index 890a918..fe78317 100644
--- a/testpar/t_mpi.c
+++ b/testpar/t_mpi.c
@@ -303,7 +303,7 @@ static int test_mpio_gb_file(char *filename) {
                             mpi_rank, mpi_off, mpi_off);
                 /* set data to some trivial pattern for easy verification */
                 for (j = 0; j < MB; j++)
-                    *(buf + j) = i * mpi_size + mpi_rank;
+                    *(buf + j) = (int8_t)(i * mpi_size + mpi_rank);
                 if (VERBOSE_MED)
                     HDfprintf(stdout,
                             "proc %d: writing %d bytes at offset %lld\n",
@@ -351,7 +351,7 @@ static int test_mpio_gb_file(char *filename) {
                 mrc = MPI_File_read_at(fh, mpi_off, buf, MB, MPI_BYTE,
                         &mpi_stat);
                 INFO((mrc == MPI_SUCCESS), "GB size file read");
-                expected = i * mpi_size + (mpi_size - mpi_rank - 1);
+                expected = (int8_t)(i * mpi_size + (mpi_size - mpi_rank - 1));
                 vrfyerrs = 0;
                 for (j = 0; j < MB; j++) {
                     if ((*(buf + j) != expected)
@@ -526,7 +526,7 @@ static int test_mpio_1wMr(char *filename, int special_request) {
     * ==================================================*/
     irank = 0;
     for (i = 0; i < DIMSIZE; i++)
-        writedata[i] = irank * DIMSIZE + i;
+        H5_CHECKED_ASSIGN(writedata[i], uint8_t, irank * DIMSIZE + i, int)
     mpi_off = irank * DIMSIZE;
 
     /* Only one process writes */
@@ -597,7 +597,7 @@ static int test_mpio_1wMr(char *filename, int special_request) {
         return 1;
     };
     for (i = 0; i < DIMSIZE; i++) {
-        expect_val = irank * DIMSIZE + i;
+        H5_CHECKED_ASSIGN(expect_val, uint8_t, irank * DIMSIZE + i, int);
         if (readdata[i] != expect_val) {
             PRINTID;
             HDprintf("read data[%d:%d] got %02x, expect %02x\n", irank, i,
@@ -697,7 +697,7 @@ static int test_mpio_derived_dtype(char *filename) {
     MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
     retcode = 0;
     for (i = 0; i < 3; i++)
-        buf[i] = i + 1;
+        H5_CHECKED_ASSIGN(buf[i], int8_t, i + 1, int);
 
     if ((mpi_err = MPI_File_open(MPI_COMM_WORLD, filename,
             MPI_MODE_RDWR | MPI_MODE_CREATE, MPI_INFO_NULL, &fh))
diff --git a/testpar/t_shapesame.c b/testpar/t_shapesame.c
index abbfbb3..c12cf5a 100644
--- a/testpar/t_shapesame.c
+++ b/testpar/t_shapesame.c
@@ -1981,7 +1981,6 @@ contig_hs_dr_pio_test__run_test(const int test_num,
 #if CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG
     const char *fcnName = "contig_hs_dr_pio_test__run_test()";
 #endif /* CONTIG_HS_DR_PIO_TEST__RUN_TEST__DEBUG */
-    int        mpi_rank;
     struct hs_dr_pio_test_vars_t test_vars =
     {
         /* int           mpi_size                        = */ -1,
@@ -2049,9 +2048,6 @@ contig_hs_dr_pio_test__run_test(const int test_num,
                           small_rank, large_rank, use_collective_io,
                           dset_type, express_test, tv_ptr);
 
-    /* initialize the local copy of mpi_rank */
-    mpi_rank = tv_ptr->mpi_rank;
-
     /* initialize skips & max_skips */
     tv_ptr->skips = *skips_ptr;
     tv_ptr->max_skips = max_skips;
@@ -3520,7 +3516,6 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr)
     const char *fcnName = "ckrbrd_hs_dr_pio_test__m2d_l2s()";
 #endif /* CHECKER_BOARD_HS_DR_PIO_TEST__M2D_L2S__DEBUG */
     hbool_t    data_ok = FALSE;
-    hbool_t    mis_match = FALSE;
     int        i, j, k, l;
     size_t      u;
     size_t      start_index;
@@ -3768,8 +3763,6 @@ ckrbrd_hs_dr_pio_test__m2d_l2s(struct hs_dr_pio_test_vars_t * tv_ptr)
 
                     /* verify that expected data is retrieved */
 
-                    mis_match = FALSE;
-
                     expected_value = (uint32_t)(
                 (i * tv_ptr->edge_size * tv_ptr->edge_size *
                                  tv_ptr->edge_size * tv_ptr->edge_size) +
@@ -3878,7 +3871,6 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr)
     const char *fcnName = "ckrbrd_hs_dr_pio_test__m2d_s2l()";
 #endif /* CONTIG_HS_DR_PIO_TEST__M2D_S2L__DEBUG */
     hbool_t    data_ok = FALSE;
-    hbool_t    mis_match = FALSE;
     int        i, j, k, l;
     size_t      u;
     size_t      start_index;
@@ -4138,8 +4130,6 @@ ckrbrd_hs_dr_pio_test__m2d_s2l(struct hs_dr_pio_test_vars_t * tv_ptr)
                     HDassert( stop_index < tv_ptr->large_ds_size );
 
 
-                    mis_match = FALSE;
-
                     data_ok = TRUE;
 
                     ptr_1 = tv_ptr->large_ds_buf_1;
@@ -4235,7 +4225,6 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num,
 #if CKRBRD_HS_DR_PIO_TEST__RUN_TEST__DEBUG
     const char *fcnName = "ckrbrd_hs_dr_pio_test__run_test()";
 #endif /* CKRBRD_HS_DR_PIO_TEST__RUN_TEST__DEBUG */
-    int        mpi_rank; /* needed by VRFY */
     struct hs_dr_pio_test_vars_t test_vars =
     {
         /* int           mpi_size                        = */ -1,
@@ -4305,10 +4294,6 @@ ckrbrd_hs_dr_pio_test__run_test(const int test_num,
                           tv_ptr);
 
 
-    /* initialize the local copy of mpi_rank */
-    mpi_rank = tv_ptr->mpi_rank;
-
-
     /* initialize skips & max_skips */
     tv_ptr->skips = *skips_ptr;
     tv_ptr->max_skips = max_skips;
diff --git a/testpar/t_span_tree.c b/testpar/t_span_tree.c
index 9a4ac4d..c3cc7b5 100644
--- a/testpar/t_span_tree.c
+++ b/testpar/t_span_tree.c
@@ -37,7 +37,7 @@
 
 
 static void coll_write_test(int chunk_factor);
-static void coll_read_test(int chunk_factor);
+static void coll_read_test(void);
 
 
 /*-------------------------------------------------------------------------
@@ -84,7 +84,7 @@ void
 coll_irregular_cont_read(void)
 {
 
-  coll_read_test(0);
+  coll_read_test();
 
 }
 
@@ -133,7 +133,7 @@ void
 coll_irregular_simple_chunk_read(void)
 {
 
-  coll_read_test(1);
+  coll_read_test();
 
 }
 
@@ -181,7 +181,7 @@ void
 coll_irregular_complex_chunk_read(void)
 {
 
-  coll_read_test(4);
+  coll_read_test();
 
 }
 
@@ -662,7 +662,7 @@ void coll_write_test(int chunk_factor)
  *-------------------------------------------------------------------------
  */
 static void
-coll_read_test(int chunk_factor)
+coll_read_test(void)
 {
 
   const   char *filename;
@@ -923,7 +923,9 @@ coll_read_test(int chunk_factor)
 ****************************************************************/
 
 #define LDSCT_DS_RANK    5
+#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG
 #define LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK 0
+#endif
 
 #define LOWER_DIM_SIZE_COMP_TEST__SELECT_CHECKER_BOARD__DEBUG 0
 
@@ -1558,7 +1560,9 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size,
     size_t        small_ds_size;
     size_t        small_ds_slice_size;
     size_t        large_ds_size;
+#if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG
     size_t        large_ds_slice_size;
+#endif
     uint32_t      expected_value;
     uint32_t    * small_ds_buf_0 = NULL;
     uint32_t    * small_ds_buf_1 = NULL;
@@ -1612,9 +1616,10 @@ lower_dim_size_comp_test__run_test(const int chunk_edge_size,
     small_ds_size       = (size_t)((mpi_size + 1) *  1 *  1 * 10 * 10);
     small_ds_slice_size = (size_t)                 ( 1 *  1 * 10 * 10);
     large_ds_size       = (size_t)((mpi_size + 1) * 10 * 10 * 10 * 10);
-    large_ds_slice_size = (size_t)                 (10 * 10 * 10 * 10);
 
 #if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG
+    large_ds_slice_size = (size_t)                 (10 * 10 * 10 * 10);
+
     if ( mpi_rank == LOWER_DIM_SIZE_COMP_TEST_DEBUG_TARGET_RANK ) {
         HDfprintf(stdout, "%s:%d: small ds size / slice size = %d / %d.\n",
                   fcnName, mpi_rank,