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authorRichard Warren <Richard.Warren@hdfgroup.org>2017-10-13 12:58:46 (GMT)
committerRichard Warren <Richard.Warren@hdfgroup.org>2017-10-13 12:58:46 (GMT)
commit0c207cd2f84021526690bcbc4e0a8a49ea4cb8a4 (patch)
tree8cb858355dceffefc201f5dd1d35c0f9b9b7801e /testpar
parent087e0d6efa0fdc9e9656d61f5dc2efd62b169e07 (diff)
parent3dde6d0e32461f46630f814a2fdfbd4c813703bf (diff)
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Merge pull request #704 in HDFFV/hdf5 from optimize_superblock_read to develop
* commit '3dde6d0e32461f46630f814a2fdfbd4c813703bf': Updated the code and RELEASE.txt note per comments from John Mainzer Try to address most of the issues raised by Dana in the code review Made edits suggested by John as part of the code review Update the MANIFEST and release_docs/RELEASE files Add a test for parallel reads of independent files using MPI subgroups Edits to the file open optimization and associated test code to bring them closer to the HDF5 library's unwritten coding standards. Also bug fix to repair a hang in testphdf5. The initial coding for the superblock read optization
Diffstat (limited to 'testpar')
-rw-r--r--testpar/CMakeLists.txt1
-rw-r--r--testpar/Makefile.am2
-rw-r--r--testpar/t_pread.c904
3 files changed, 906 insertions, 1 deletions
diff --git a/testpar/CMakeLists.txt b/testpar/CMakeLists.txt
index 39d23a9..0c9f70e 100644
--- a/testpar/CMakeLists.txt
+++ b/testpar/CMakeLists.txt
@@ -47,6 +47,7 @@ set (H5P_TESTS
t_cache
t_pflush1
t_pflush2
+ t_pread
t_pshutdown
t_prestart
t_init_term
diff --git a/testpar/Makefile.am b/testpar/Makefile.am
index b0fe0cd..1f15830 100644
--- a/testpar/Makefile.am
+++ b/testpar/Makefile.am
@@ -23,7 +23,7 @@ AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/test
# Test programs. These are our main targets.
#
-TEST_PROG_PARA=t_mpi t_bigio testphdf5 t_cache t_cache_image t_pflush1 t_pflush2 t_pshutdown t_prestart t_init_term t_shapesame t_filters_parallel
+TEST_PROG_PARA=t_mpi t_bigio testphdf5 t_cache t_cache_image t_pflush1 t_pflush2 t_pread t_pshutdown t_prestart t_init_term t_shapesame t_filters_parallel
check_PROGRAMS = $(TEST_PROG_PARA)
diff --git a/testpar/t_pread.c b/testpar/t_pread.c
new file mode 100644
index 0000000..7f23b9b
--- /dev/null
+++ b/testpar/t_pread.c
@@ -0,0 +1,904 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Collective file open optimization tests
+ *
+ */
+
+#include "h5test.h"
+#include "testpar.h"
+
+/* The collection of files is included below to aid
+ * an external "cleanup" process if required.
+ *
+ * Note that the code below relies on the ordering of this array
+ * since each set of three is used by the tests either to construct
+ * or to read and validate.
+ */
+#define NFILENAME 9
+const char *FILENAMES[NFILENAME + 1]={"t_pread_data_file",
+ "reloc_t_pread_data_file",
+ "prefix_file",
+ "t_pread_group_0_file",
+ "reloc_t_pread_group_0_file",
+ "prefix_file_0",
+ "t_pread_group_1_file",
+ "reloc_t_pread_group_1_file",
+ "prefix_file_1",
+ NULL};
+#define FILENAME_BUF_SIZE 1024
+
+#define COUNT 1000
+
+hbool_t pass = true;
+static const char *random_hdf5_text =
+"Now is the time for all first-time-users of HDF5 to read their \
+manual or go thru the tutorials!\n\
+While you\'re at it, now is also the time to read up on MPI-IO.";
+
+static const char *hitchhiker_quote =
+"A common mistake that people make when trying to design something\n\
+completely foolproof is to underestimate the ingenuity of complete\n\
+fools.\n";
+
+static int generate_test_file(MPI_Comm comm, int mpi_rank, int group);
+static int test_parallel_read(MPI_Comm comm, int mpi_rank, int group);
+
+
+/*-------------------------------------------------------------------------
+ * Function: generate_test_file
+ *
+ * Purpose: This function is called to produce an HDF5 data file
+ * whose superblock is relocated to a non-zero offset by
+ * utilizing the 'h5jam' utility to write random text
+ * at the start of the file. Unlike simple concatenation
+ * of files, h5jam is used to place the superblock on a
+ * power-of-2 boundary.
+ *
+ * Since data will be read back and validated, we generate
+ * data in a predictable manner rather than randomly.
+ * For now, we simply use the global mpi_rank of the writing
+ * process as a starting component for the data generation.
+ * Subsequent writes are increments from the initial start
+ * value.
+ *
+ * In the overall scheme of running the test, we'll call
+ * this function twice: first as a collection of all MPI
+ * processes and then a second time with the processes split
+ * more or less in half. Each sub group will operate
+ * collectively on their assigned file. This split into
+ * subgroups validates that parallel groups can successfully
+ * open and read data independantly from the other parallel
+ * operations taking place.
+ *
+ * Return: Success: 0
+ *
+ * Failure: 1
+ *
+ * Programmer: Richard Warren
+ * 10/1/17
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+generate_test_file( MPI_Comm comm, int mpi_rank, int group_id )
+{
+ FILE *header = NULL;
+ const char *fcn_name = "generate_test_file()";
+ const char *failure_mssg = NULL;
+ const char *group_filename = NULL;
+ char data_filename[FILENAME_BUF_SIZE];
+ char reloc_data_filename[FILENAME_BUF_SIZE];
+ char prolog_filename[FILENAME_BUF_SIZE];
+ int file_index;
+ int group_size;
+ int group_rank;
+ int local_failure = 0;
+ int global_failures = 0;
+ hsize_t count = COUNT;
+ hsize_t i;
+ hsize_t offset;
+ hsize_t dims[1] = {0};
+ hid_t file_id = -1;
+ hid_t memspace = -1;
+ hid_t filespace = -1;
+ hid_t fapl_id = -1;
+ hid_t dxpl_id = -1;
+ hid_t dset_id = -1;
+ float nextValue;
+ float *data_slice = NULL;
+
+ pass = true;
+
+ HDassert(comm != MPI_COMM_NULL);
+
+ if ( (MPI_Comm_rank(comm, &group_rank)) != MPI_SUCCESS) {
+ pass = FALSE;
+ failure_mssg = "generate_test_file: MPI_Comm_rank failed.\n";
+ }
+
+ if ( (MPI_Comm_size(comm, &group_size)) != MPI_SUCCESS) {
+ pass = FALSE;
+ failure_mssg = "generate_test_file: MPI_Comm_size failed.\n";
+ }
+
+ if ( mpi_rank == 0 ) {
+
+ HDfprintf(stdout, "Constructing test files...");
+ }
+
+ /* Setup the file names
+ * The test specfic filenames are stored as consecutive
+ * array entries in the global 'FILENAMES' array above.
+ * Here, we simply decide on the starting index for
+ * file construction. The reading portion of the test
+ * will have a similar setup process...
+ */
+ if ( pass ) {
+ if ( comm == MPI_COMM_WORLD ) { /* Test 1 */
+ file_index = 0;
+ }
+ else if ( group_id == 0 ) { /* Test 2 group 0 */
+ file_index = 3;
+ }
+ else { /* Test 2 group 1 */
+ file_index = 6;
+ }
+
+ /* The 'group_filename' is just a temp variable and
+ * is used to call into the h5_fixname function. No
+ * need to worry that we reassign it for each file!
+ */
+ HDassert((group_filename = FILENAMES[file_index]));
+
+ /* Assign the 'data_filename' */
+ if ( h5_fixname(group_filename, H5P_DEFAULT, data_filename,
+ sizeof(data_filename)) == NULL ) {
+ pass = FALSE;
+ failure_mssg = "h5_fixname(0) failed.\n";
+ }
+ }
+
+ if ( pass ) {
+
+ HDassert( (group_filename = FILENAMES[file_index+1]) );
+
+ /* Assign the 'reloc_data_filename' */
+ if ( h5_fixname(group_filename, H5P_DEFAULT, reloc_data_filename,
+ sizeof(reloc_data_filename)) == NULL ) {
+
+ pass = FALSE;
+ failure_mssg = "h5_fixname(1) failed.\n";
+ }
+ }
+
+ if ( pass ) {
+
+ HDassert( (group_filename = FILENAMES[file_index+2]) );
+
+ /* Assign the 'prolog_filename' */
+ if ( h5_fixname(group_filename, H5P_DEFAULT, prolog_filename,
+ sizeof(prolog_filename)) == NULL ) {
+ pass = FALSE;
+ failure_mssg = "h5_fixname(2) failed.\n";
+ }
+ }
+
+ /* setup data to write */
+ if ( pass ) {
+ if ( (data_slice = (float *)HDmalloc(COUNT * sizeof(float))) == NULL ) {
+ pass = FALSE;
+ failure_mssg = "malloc of data_slice failed.\n";
+ }
+ }
+
+ if ( pass ) {
+ nextValue = (float)(mpi_rank * COUNT);
+
+ for(i=0; i<COUNT; i++) {
+ data_slice[i] = nextValue;
+ nextValue += 1;
+ }
+ }
+
+ /* setup FAPL */
+ if ( pass ) {
+ if ( (fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Pcreate(H5P_FILE_ACCESS) failed.\n";
+ }
+ }
+
+ if ( pass ) {
+ if ( (H5Pset_fapl_mpio(fapl_id, comm, MPI_INFO_NULL)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Pset_fapl_mpio() failed\n";
+ }
+ }
+
+ /* create the data file */
+ if ( pass ) {
+ if ( (file_id = H5Fcreate(data_filename, H5F_ACC_TRUNC,
+ H5P_DEFAULT, fapl_id)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Fcreate() failed.\n";
+ }
+ }
+
+ /* create and write the dataset */
+ if ( pass ) {
+ if ( (dxpl_id = H5Pcreate(H5P_DATASET_XFER)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Pcreate(H5P_DATASET_XFER) failed.\n";
+ }
+ }
+
+ if ( pass ) {
+ if ( (H5Pset_dxpl_mpio(dxpl_id, H5FD_MPIO_COLLECTIVE)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Pset_dxpl_mpio() failed.\n";
+ }
+ }
+
+ if ( pass ) {
+ dims[0] = COUNT;
+ if ( (memspace = H5Screate_simple(1, dims, NULL)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Screate_simple(1, dims, NULL) failed (1).\n";
+ }
+ }
+
+ if ( pass ) {
+ dims[0] *= (hsize_t)group_size;
+ if ( (filespace = H5Screate_simple(1, dims, NULL)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Screate_simple(1, dims, NULL) failed (2).\n";
+ }
+ }
+
+ if ( pass ) {
+ offset = (hsize_t)group_rank * (hsize_t)COUNT;
+ if ( (H5Sselect_hyperslab(filespace, H5S_SELECT_SET, &offset,
+ NULL, &count, NULL)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Sselect_hyperslab() failed.\n";
+ }
+ }
+
+ if ( pass ) {
+ if ( (dset_id = H5Dcreate2(file_id, "dataset0", H5T_NATIVE_FLOAT,
+ filespace, H5P_DEFAULT, H5P_DEFAULT,
+ H5P_DEFAULT)) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Dcreate2() failed.\n";
+ }
+ }
+
+ if ( pass ) {
+ if ( (H5Dwrite(dset_id, H5T_NATIVE_FLOAT, memspace,
+ filespace, dxpl_id, data_slice)) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Dwrite() failed.\n";
+ }
+ }
+
+ /* close file, etc. */
+ if ( pass || (dset_id != -1)) {
+ if ( H5Dclose(dset_id) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Dclose(dset_id) failed.\n";
+ }
+ }
+
+ if ( pass || (memspace != -1) ) {
+ if ( H5Sclose(memspace) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Sclose(memspace) failed.\n";
+ }
+ }
+
+ if ( pass || (filespace != -1) ) {
+ if ( H5Sclose(filespace) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Sclose(filespace) failed.\n";
+ }
+ }
+
+ if ( pass || (file_id != -1) ) {
+ if ( H5Fclose(file_id) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Fclose(file_id) failed.\n";
+ }
+ }
+
+ if ( pass || (dxpl_id != -1) ) {
+ if ( H5Pclose(dxpl_id) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Pclose(dxpl_id) failed.\n";
+ }
+ }
+
+ if ( pass || (fapl_id != -1) ) {
+ if ( H5Pclose(fapl_id) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Pclose(fapl_id) failed.\n";
+ }
+ }
+
+ /* Add a userblock to the head of the datafile.
+ * We will use this to for a functional test of the
+ * file open optimization. This is superblock
+ * relocation is done by the rank 0 process associated
+ * with the communicator being used. For test 1, we
+ * utilize MPI_COMM_WORLD, so group_rank 0 is the
+ * same as mpi_rank 0. For test 2 which utilizes
+ * two groups resulting from an MPI_Comm_split, we
+ * will have parallel groups and hence two
+ * group_rank(0) processes. Each parallel group
+ * will create a unique file with different text
+ * headers and different data.
+ *
+ * We also delete files that are no longer needed.
+ */
+ if ( group_rank == 0 ) {
+
+ const char *text_to_write;
+ size_t bytes_to_write;
+
+ if (group_id == 0)
+ text_to_write = random_hdf5_text;
+ else
+ text_to_write = hitchhiker_quote;
+
+ bytes_to_write = strlen(text_to_write);
+
+ if ( pass ) {
+ if ( (header = HDfopen(prolog_filename, "w+")) == NULL ) {
+ pass = FALSE;
+ failure_mssg = "HDfopen(prolog_filename, \"w+\") failed.\n";
+ }
+ }
+
+ if ( pass ) {
+
+ if ( HDfwrite(text_to_write, 1, bytes_to_write, header) !=
+ bytes_to_write ) {
+ pass = FALSE;
+ failure_mssg = "Unable to write header file.\n";
+ }
+ }
+
+ if ( pass || (header != NULL) ) {
+ if ( HDfclose(header) != 0 ) {
+ pass = FALSE;
+ failure_mssg = "HDfclose() failed.\n";
+ }
+ }
+
+ if ( pass ) {
+ char cmd[256];
+
+ HDsprintf(cmd, "../tools/src/h5jam/h5jam -i %s -u %s -o %s",
+ data_filename, prolog_filename, reloc_data_filename);
+
+ if ( system(cmd) != 0 ) {
+ pass = FALSE;
+ failure_mssg = "invocation of h5jam failed.\n";
+ }
+ }
+
+ HDremove(prolog_filename);
+ HDremove(data_filename);
+ }
+
+ /* collect results from other processes.
+ * Only overwrite the failure message if no preveious error
+ * has been detected
+ */
+ local_failure = ( pass ? 0 : 1 );
+
+ /* This is a global all reduce (NOT group specific) */
+ if ( MPI_Allreduce(&local_failure, &global_failures, 1,
+ MPI_INT, MPI_SUM, MPI_COMM_WORLD) != MPI_SUCCESS ) {
+ if ( pass ) {
+ pass = FALSE;
+ failure_mssg = "MPI_Allreduce() failed.\n";
+ }
+ } else if ( ( pass ) && ( global_failures > 0 ) ) {
+ pass = FALSE;
+ failure_mssg = "One or more processes report failure.\n";
+ }
+
+ /* report results */
+ if ( mpi_rank == 0 ) {
+ if ( pass ) {
+ HDfprintf(stdout, "Done.\n");
+ } else {
+ HDfprintf(stdout, "FAILED.\n");
+ HDfprintf(stdout, "%s: failure_mssg = \"%s\"\n",
+ fcn_name, failure_mssg);
+ }
+ }
+
+ /* free data_slice if it has been allocated */
+ if ( data_slice != NULL ) {
+ HDfree(data_slice);
+ data_slice = NULL;
+ }
+
+ return(! pass);
+
+} /* generate_test_file() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: test_parallel_read
+ *
+ * Purpose: This actually tests the superblock optimization
+ * and covers the two primary cases we're interested in.
+ * 1). That HDF5 files can be opened in parallel by
+ * the rank 0 process and that the superblock
+ * offset is correctly broadcast to the other
+ * parallel file readers.
+ * 2). That a parallel application can correctly
+ * handle reading multiple files by using
+ * subgroups of MPI_COMM_WORLD and that each
+ * subgroup operates as described in (1) to
+ * collectively read the data.
+ *
+ * The global MPI rank is used for reading and
+ * writing data for process specific data in the
+ * dataset. We do this rather simplisticly, i.e.
+ * rank 0: writes/reads 0-9999
+ * rank 1: writes/reads 1000-1999
+ * rank 2: writes/reads 2000-2999
+ * ...
+ *
+ * Return: Success: 0
+ *
+ * Failure: 1
+ *
+ * Programmer: Richard Warren
+ * 10/1/17
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+test_parallel_read(MPI_Comm comm, int mpi_rank, int group_id)
+{
+ const char *failure_mssg;
+ const char *fcn_name = "test_parallel_read()";
+ const char *group_filename = NULL;
+ char reloc_data_filename[FILENAME_BUF_SIZE];
+ int local_failure = 0;
+ int global_failures = 0;
+ int group_size;
+ int group_rank;
+ hid_t fapl_id = -1;
+ hid_t file_id = -1;
+ hid_t dset_id = -1;
+ hid_t memspace = -1;
+ hid_t filespace = -1;
+ hsize_t i;
+ hsize_t offset;
+ hsize_t count = COUNT;
+ hsize_t dims[1] = {0};
+ float nextValue;
+ float *data_slice = NULL;
+
+ pass = TRUE;
+
+ HDassert(comm != MPI_COMM_NULL);
+
+ if ( (MPI_Comm_rank(comm, &group_rank)) != MPI_SUCCESS) {
+ pass = FALSE;
+ failure_mssg = "test_parallel_read: MPI_Comm_rank failed.\n";
+ }
+
+ if ( (MPI_Comm_size(comm, &group_size)) != MPI_SUCCESS) {
+ pass = FALSE;
+ failure_mssg = "test_parallel_read: MPI_Comm_size failed.\n";
+ }
+
+ if ( mpi_rank == 0 ) {
+ if ( comm == MPI_COMM_WORLD ) {
+ TESTING("parallel file open test 1");
+ }
+ else {
+ TESTING("parallel file open test 2");
+ }
+ }
+
+ /* allocate space for the data_slice array */
+ if ( pass ) {
+ if ( (data_slice = (float *)HDmalloc(COUNT * sizeof(float))) == NULL ) {
+ pass = FALSE;
+ failure_mssg = "malloc of data_slice failed.\n";
+ }
+ }
+
+
+ /* Select the file file name to read
+ * Please see the comments in the 'generate_test_file' function
+ * for more details...
+ */
+ if ( pass ) {
+
+ if ( comm == MPI_COMM_WORLD ) /* test 1 */
+ group_filename = FILENAMES[1];
+ else if ( group_id == 0 ) /* test 2 group 0 */
+ group_filename = FILENAMES[4];
+ else /* test 2 group 1 */
+ group_filename = FILENAMES[7];
+
+ HDassert(group_filename);
+ if ( h5_fixname(group_filename, H5P_DEFAULT, reloc_data_filename,
+ sizeof(reloc_data_filename)) == NULL ) {
+
+ pass = FALSE;
+ failure_mssg = "h5_fixname(1) failed.\n";
+ }
+ }
+
+ /* setup FAPL */
+ if ( pass ) {
+ if ( (fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Pcreate(H5P_FILE_ACCESS) failed.\n";
+ }
+ }
+
+ if ( pass ) {
+ if ( (H5Pset_fapl_mpio(fapl_id, comm, MPI_INFO_NULL)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Pset_fapl_mpio() failed\n";
+ }
+ }
+
+ /* open the file -- should have user block, exercising the optimization */
+ if ( pass ) {
+ if ( (file_id = H5Fopen(reloc_data_filename,
+ H5F_ACC_RDONLY, fapl_id)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Fopen() failed\n";
+ }
+ }
+
+ /* open the data set */
+ if ( pass ) {
+ if ( (dset_id = H5Dopen2(file_id, "dataset0", H5P_DEFAULT)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Dopen2() failed\n";
+ }
+ }
+
+ /* setup memspace */
+ if ( pass ) {
+ dims[0] = count;
+ if ( (memspace = H5Screate_simple(1, dims, NULL)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Screate_simple(1, dims, NULL) failed\n";
+ }
+ }
+
+ /* setup filespace */
+ if ( pass ) {
+ if ( (filespace = H5Dget_space(dset_id)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Dget_space(dataset) failed\n";
+ }
+ }
+
+ if ( pass ) {
+ offset = (hsize_t)group_rank * count;
+ if ( (H5Sselect_hyperslab(filespace, H5S_SELECT_SET,
+ &offset, NULL, &count, NULL)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Sselect_hyperslab() failed\n";
+ }
+ }
+
+ /* read this processes section of the data */
+ if ( pass ) {
+ if ( (H5Dread(dset_id, H5T_NATIVE_FLOAT, memspace,
+ filespace, H5P_DEFAULT, data_slice)) < 0 ) {
+ pass = FALSE;
+ failure_mssg = "H5Dread() failed\n";
+ }
+ }
+
+ /* verify the data */
+ if ( pass ) {
+ nextValue = (float)((hsize_t)mpi_rank * count);
+ i = 0;
+ while ( ( pass ) && ( i < count ) ) {
+ /* what we really want is data_slice[i] != nextValue --
+ * the following is a circumlocution to shut up the
+ * the compiler.
+ */
+ if ( ( data_slice[i] > nextValue ) ||
+ ( data_slice[i] < nextValue ) ) {
+ pass = FALSE;
+ failure_mssg = "Unexpected dset contents.\n";
+ }
+ nextValue += 1;
+ i++;
+ }
+ }
+
+ /* close file, etc. */
+ if ( pass || (dset_id != -1) ) {
+ if ( H5Dclose(dset_id) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Dclose(dset_id) failed.\n";
+ }
+ }
+
+ if ( pass || (memspace != -1) ) {
+ if ( H5Sclose(memspace) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Sclose(memspace) failed.\n";
+ }
+ }
+
+ if ( pass || (filespace != -1) ) {
+ if ( H5Sclose(filespace) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Sclose(filespace) failed.\n";
+ }
+ }
+
+ if ( pass || (file_id != -1) ) {
+ if ( H5Fclose(file_id) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Fclose(file_id) failed.\n";
+ }
+ }
+
+ if ( pass || (fapl_id != -1) ) {
+ if ( H5Pclose(fapl_id) < 0 ) {
+ pass = false;
+ failure_mssg = "H5Pclose(fapl_id) failed.\n";
+ }
+ }
+
+ /* collect results from other processes.
+ * Only overwrite the failure message if no preveious error
+ * has been detected
+ */
+ local_failure = ( pass ? 0 : 1 );
+
+ if ( MPI_Allreduce( &local_failure, &global_failures, 1,
+ MPI_INT, MPI_SUM, MPI_COMM_WORLD) != MPI_SUCCESS ) {
+ if ( pass ) {
+ pass = FALSE;
+ failure_mssg = "MPI_Allreduce() failed.\n";
+ }
+ } else if ( ( pass ) && ( global_failures > 0 ) ) {
+ pass = FALSE;
+ failure_mssg = "One or more processes report failure.\n";
+ }
+
+ /* report results and finish cleanup */
+ if ( group_rank == 0 ) {
+ if ( pass ) {
+ PASSED();
+ } else {
+ H5_FAILED();
+ HDfprintf(stdout, "%s: failure_mssg = \"%s\"\n",
+ fcn_name, failure_mssg);
+ }
+
+ HDremove(reloc_data_filename);
+ }
+
+ /* free data_slice if it has been allocated */
+ if ( data_slice != NULL ) {
+ HDfree(data_slice);
+ data_slice = NULL;
+ }
+
+
+ return( ! pass );
+
+} /* test_parallel_read() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: To implement a parallel test which validates whether the
+ * new superblock lookup functionality is working correctly.
+ *
+ * The test consists of creating two seperate HDF datasets
+ * in which random text is inserted at the start of each
+ * file using the 'j5jam' application. This forces the
+ * HDF5 file superblock to a non-zero offset.
+ * Having created the two independant files, we create two
+ * non-overlapping MPI groups, each of which is then tasked
+ * with the opening and validation of the data contained
+ * therein.
+ *
+ * WARNING: This test uses fork() and execve(), and
+ * therefore will not run on Windows.
+ *
+ * Return: Success: 0
+ *
+ * Failure: 1
+ *
+ * Programmer: Richard Warren
+ * 10/1/17
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int
+main( int argc, char **argv)
+{
+ int nerrs = 0;
+ int which_group = 0;
+ int mpi_rank;
+ int mpi_size;
+ int split_size;
+ MPI_Comm group_comm = MPI_COMM_WORLD;
+
+ if ( (MPI_Init(&argc, &argv)) != MPI_SUCCESS) {
+ HDfprintf(stderr, "FATAL: Unable to initialize MPI\n");
+ HDexit(EXIT_FAILURE);
+ }
+
+ if ( (MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank)) != MPI_SUCCESS) {
+ HDfprintf(stderr, "FATAL: MPI_Comm_rank returned an error\n");
+ HDexit(EXIT_FAILURE);
+ }
+
+ if ( (MPI_Comm_size(MPI_COMM_WORLD, &mpi_size)) != MPI_SUCCESS) {
+ HDfprintf(stderr, "FATAL: MPI_Comm_size returned an error\n");
+ HDexit(EXIT_FAILURE);
+ }
+
+ H5open();
+
+ if ( mpi_rank == 0 ) {
+ HDfprintf(stdout, "========================================\n");
+ HDfprintf(stdout, "Collective file open optimization tests\n");
+ HDfprintf(stdout, " mpi_size = %d\n", mpi_size);
+ HDfprintf(stdout, "========================================\n");
+ }
+
+ if ( mpi_size < 4 ) {
+
+ if ( mpi_rank == 0 ) {
+
+ HDprintf(" Need at least 4 processes. Exiting.\n");
+ }
+ goto finish;
+ }
+
+ /* ------ Create two (2) MPI groups ------
+ *
+ * We split MPI_COMM_WORLD into 2 more or less equal sized
+ * groups. The resulting communicators will be used to generate
+ * two HDF files which in turn will be opened in parallel and the
+ * contents verified in the second read test below.
+ */
+ split_size = mpi_size / 2;
+ which_group = (mpi_rank < split_size ? 0 : 1);
+
+ if ( (MPI_Comm_split(MPI_COMM_WORLD,
+ which_group,
+ 0,
+ &group_comm)) != MPI_SUCCESS) {
+
+ HDfprintf(stderr, "FATAL: MPI_Comm_split returned an error\n");
+ HDexit(EXIT_FAILURE);
+ }
+
+ /* ------ Generate all files ------ */
+
+ /* We generate the file used for test 1 */
+ nerrs += generate_test_file( MPI_COMM_WORLD, mpi_rank, which_group );
+
+ if ( nerrs > 0 ) {
+ if ( mpi_rank == 0 ) {
+ HDprintf(" Test(1) file construction failed -- skipping tests.\n");
+ }
+ goto finish;
+ }
+
+ /* We generate the file used for test 2 */
+ nerrs += generate_test_file( group_comm, mpi_rank, which_group );
+
+ if ( nerrs > 0 ) {
+ if ( mpi_rank == 0 ) {
+ HDprintf(" Test(2) file construction failed -- skipping tests.\n");
+ }
+ goto finish;
+ }
+
+ /* Now read the generated test file (stil using MPI_COMM_WORLD) */
+ nerrs += test_parallel_read( MPI_COMM_WORLD, mpi_rank, which_group);
+
+ if ( nerrs > 0 ) {
+ if ( mpi_rank == 0 ) {
+ HDprintf(" Parallel read test(1) failed -- skipping tests.\n");
+ }
+ goto finish;
+ }
+
+ /* Update the user on our progress so far. */
+ if ( mpi_rank == 0 ) {
+ HDprintf(" Test 1 of 2 succeeded\n");
+ HDprintf(" -- Starting multi-group parallel read test.\n");
+ }
+
+ /* run the 2nd set of tests */
+ nerrs += test_parallel_read(group_comm, mpi_rank, which_group);
+
+ if ( nerrs > 0 ) {
+ if ( mpi_rank == 0 ) {
+ HDprintf(" Multi-group read test(2) failed\n");
+ }
+ goto finish;
+ }
+
+ if ( mpi_rank == 0 ) {
+ HDprintf(" Test 2 of 2 succeeded\n");
+ }
+
+finish:
+
+ if ((group_comm != MPI_COMM_NULL) &&
+ (MPI_Comm_free(&group_comm)) != MPI_SUCCESS) {
+ HDfprintf(stderr, "MPI_Comm_free failed!\n");
+ }
+
+
+ /* make sure all processes are finished before final report, cleanup
+ * and exit.
+ */
+ MPI_Barrier(MPI_COMM_WORLD);
+
+ if ( mpi_rank == 0 ) { /* only process 0 reports */
+ const char *header = "Collective file open optimization tests";
+
+ HDfprintf(stdout, "===================================\n");
+ if ( nerrs > 0 ) {
+
+ HDfprintf(stdout, "***%s detected %d failures***\n", header, nerrs);
+ }
+ else {
+ HDfprintf(stdout, "%s finished with no failures\n", header);
+ }
+ HDfprintf(stdout, "===================================\n");
+ }
+
+ /* close HDF5 library */
+ if (H5close() != SUCCEED) {
+ HDfprintf(stdout, "H5close() failed. (Ignoring)\n");
+ }
+
+ /* MPI_Finalize must be called AFTER H5close which may use MPI calls */
+ MPI_Finalize();
+
+ /* cannot just return (nerrs) because exit code is limited to 1byte */
+ return((nerrs > 0) ? EXIT_FAILURE : EXIT_SUCCESS );
+
+} /* main() */