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authorQuincey Koziol <koziol@hdfgroup.org>2014-07-30 20:56:40 (GMT)
committerQuincey Koziol <koziol@hdfgroup.org>2014-07-30 20:56:40 (GMT)
commite8c162613b75fb3b269830defa769728f439db72 (patch)
tree7c02108c8d1012fb7e8a2b54c5503a5c2f5c019c /testpar
parentff1a9ae0e74ded0274729313ba24df578ffaf678 (diff)
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[svn-r25497] Description:
Merge changes that correspond to the 64-bit ID changes (without the actual switch to 64-bit IDs) to the 1.8 release branch. (Plus a few minor cleanups and alignments with the trunk that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
Diffstat (limited to 'testpar')
-rw-r--r--testpar/t_cache.c2
-rw-r--r--testpar/t_coll_chunk.c6
-rw-r--r--testpar/t_dset.c124
-rw-r--r--testpar/t_filter_read.c4
-rw-r--r--testpar/t_mpi.c891
-rw-r--r--testpar/testphdf5.c390
6 files changed, 708 insertions, 709 deletions
diff --git a/testpar/t_cache.c b/testpar/t_cache.c
index 234df01..85315ce 100644
--- a/testpar/t_cache.c
+++ b/testpar/t_cache.c
@@ -2847,7 +2847,7 @@ expunge_entry(H5F_t * file_ptr,
if ( nerrors == 0 ) {
- result = H5AC_expunge_entry(file_ptr, -1, &(types[0]),
+ result = H5AC_expunge_entry(file_ptr, (hid_t)-1, &(types[0]),
entry_ptr->header.addr, H5AC__NO_FLAGS_SET);
if ( result < 0 ) {
diff --git a/testpar/t_coll_chunk.c b/testpar/t_coll_chunk.c
index 133b91d..11d7b10 100644
--- a/testpar/t_coll_chunk.c
+++ b/testpar/t_coll_chunk.c
@@ -644,7 +644,7 @@ coll_chunktest(const char* filename,
dims[1] = SPACE_DIM2;
/* allocate memory for data buffer */
- data_array1 = (int *)malloc(dims[0] * dims[1] * sizeof(int));
+ data_array1 = (int *)HDmalloc(dims[0] * dims[1] * sizeof(int));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
/* set up dimensions of the slab this process accesses */
@@ -910,11 +910,11 @@ coll_chunktest(const char* filename,
/* Use collective read to verify the correctness of collective write. */
/* allocate memory for data buffer */
- data_array1 = (int *)malloc(dims[0]*dims[1]*sizeof(int));
+ data_array1 = (int *)HDmalloc(dims[0]*dims[1]*sizeof(int));
VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
/* allocate memory for data buffer */
- data_origin1 = (int *)malloc(dims[0]*dims[1]*sizeof(int));
+ data_origin1 = (int *)HDmalloc(dims[0]*dims[1]*sizeof(int));
VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
acc_plist = create_faccess_plist(comm, info, facc_type);
diff --git a/testpar/t_dset.c b/testpar/t_dset.c
index 96d3836..2bc3b09 100644
--- a/testpar/t_dset.c
+++ b/testpar/t_dset.c
@@ -302,8 +302,8 @@ dataset_writeInd(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* ----------------------------------------
* CREATE AN HDF5 FILE WITH PARALLEL ACCESS
@@ -412,7 +412,7 @@ MPI_Barrier(MPI_COMM_WORLD);
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
+ if(data_array1) HDfree(data_array1);
}
/* Example of using the parallel HDF5 library to read a dataset */
@@ -447,10 +447,10 @@ dataset_readInd(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* setup file access template */
acc_tpl = create_faccess_plist(comm, info, facc_type);
@@ -520,8 +520,8 @@ dataset_readInd(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
- if(data_origin1) free(data_origin1);
+ if(data_array1) HDfree(data_array1);
+ if(data_origin1) HDfree(data_origin1);
}
@@ -583,8 +583,8 @@ dataset_writeAll(void)
VRFY((coords != NULL), "coords malloc succeeded");
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
* START AN HDF5 FILE
@@ -1115,10 +1115,10 @@ dataset_readAll(void)
VRFY((coords != NULL), "coords malloc succeeded");
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
* OPEN AN HDF5 FILE
@@ -1527,8 +1527,8 @@ extend_writeInd(void)
chunk_dims[1] = chunkdim1;
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
* START AN HDF5 FILE
@@ -1707,7 +1707,7 @@ extend_writeInd(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
+ if(data_array1) HDfree(data_array1);
}
/*
@@ -1911,12 +1911,12 @@ extend_readInd(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_array2 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array2 != NULL), "data_array2 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
+ data_array2 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded");
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
* OPEN AN HDF5 FILE
@@ -2039,9 +2039,9 @@ extend_readInd(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
- if(data_array2) free(data_array2);
- if(data_origin1) free(data_origin1);
+ if(data_array1) HDfree(data_array1);
+ if(data_array2) HDfree(data_array2);
+ if(data_origin1) HDfree(data_origin1);
}
/*
@@ -2098,8 +2098,8 @@ extend_writeAll(void)
chunk_dims[1] = chunkdim1;
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
/* -------------------
* START AN HDF5 FILE
@@ -2303,7 +2303,7 @@ extend_writeAll(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
+ if(data_array1) HDfree(data_array1);
}
/* Example of using the parallel HDF5 library to read an extendible dataset */
@@ -2341,12 +2341,12 @@ extend_readAll(void)
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
/* allocate memory for data buffer */
- data_array1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array1 != NULL), "data_array1 malloc succeeded");
- data_array2 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_array2 != NULL), "data_array2 malloc succeeded");
- data_origin1 = (DATATYPE *)malloc(dim0*dim1*sizeof(DATATYPE));
- VRFY((data_origin1 != NULL), "data_origin1 malloc succeeded");
+ data_array1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array1 != NULL), "data_array1 HDmalloc succeeded");
+ data_array2 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_array2 != NULL), "data_array2 HDmalloc succeeded");
+ data_origin1 = (DATATYPE *)HDmalloc(dim0*dim1*sizeof(DATATYPE));
+ VRFY((data_origin1 != NULL), "data_origin1 HDmalloc succeeded");
/* -------------------
* OPEN AN HDF5 FILE
@@ -2493,9 +2493,9 @@ extend_readAll(void)
H5Fclose(fid);
/* release data buffers */
- if(data_array1) free(data_array1);
- if(data_array2) free(data_array2);
- if(data_origin1) free(data_origin1);
+ if(data_array1) HDfree(data_array1);
+ if(data_array2) HDfree(data_array2);
+ if(data_origin1) HDfree(data_origin1);
}
/*
@@ -2534,9 +2534,9 @@ compress_readAll(void)
/* Allocate data buffer */
data_orig = (DATATYPE *)HDmalloc((size_t)dim*sizeof(DATATYPE));
- VRFY((data_orig != NULL), "data_origin1 malloc succeeded");
+ VRFY((data_orig != NULL), "data_origin1 HDmalloc succeeded");
data_read = (DATATYPE *)HDmalloc((size_t)dim*sizeof(DATATYPE));
- VRFY((data_read != NULL), "data_array1 malloc succeeded");
+ VRFY((data_read != NULL), "data_array1 HDmalloc succeeded");
/* Initialize data buffers */
for(u=0; u<dim;u++)
@@ -2766,11 +2766,11 @@ none_selection_chunk(void)
/* allocate memory for data buffer. Only allocate enough buffer for
* each processor's data. */
if(mpi_rank) {
- data_origin = (DATATYPE *)malloc(block[0]*block[1]*sizeof(DATATYPE));
- VRFY((data_origin != NULL), "data_origin malloc succeeded");
+ data_origin = (DATATYPE *)HDmalloc(block[0]*block[1]*sizeof(DATATYPE));
+ VRFY((data_origin != NULL), "data_origin HDmalloc succeeded");
- data_array = (DATATYPE *)malloc(block[0]*block[1]*sizeof(DATATYPE));
- VRFY((data_array != NULL), "data_array malloc succeeded");
+ data_array = (DATATYPE *)HDmalloc(block[0]*block[1]*sizeof(DATATYPE));
+ VRFY((data_array != NULL), "data_array HDmalloc succeeded");
/* put some trivial data in the data_array */
mstart[0] = mstart[1] = 0;
@@ -2867,8 +2867,8 @@ none_selection_chunk(void)
H5Fclose(fid);
/* release data buffers */
- if(data_origin) free(data_origin);
- if(data_array) free(data_array);
+ if(data_origin) HDfree(data_origin);
+ if(data_array) HDfree(data_array);
}
@@ -3218,7 +3218,7 @@ test_actual_io_mode(int selection_mode) {
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "malloc of buffer succeeded");
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
for(i = 0; i < length; i++)
buffer[i] = i;
@@ -3649,7 +3649,7 @@ test_no_collective_cause_mode(int selection_mode)
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "malloc of buffer succeeded");
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
for(i = 0; i < length; i++)
buffer[i] = i;
@@ -3889,7 +3889,7 @@ test_no_collective_cause_mode_filter(int selection_mode)
/* Allocate and initialize the buffer */
buffer = (int *)HDmalloc(sizeof(int) * length);
- VRFY((buffer != NULL), "malloc of buffer succeeded");
+ VRFY((buffer != NULL), "HDmalloc of buffer succeeded");
for(i = 0; i < length; i++)
buffer[i] = i;
@@ -4073,11 +4073,11 @@ dataset_atomicity(void)
buf_size = dim0 * dim1;
/* allocate memory for data buffer */
- write_buf = (int *)calloc(buf_size, sizeof(int));
- VRFY((write_buf != NULL), "write_buf malloc succeeded");
+ write_buf = (int *)HDcalloc(buf_size, sizeof(int));
+ VRFY((write_buf != NULL), "write_buf HDcalloc succeeded");
/* allocate memory for data buffer */
- read_buf = (int *)calloc(buf_size, sizeof(int));
- VRFY((read_buf != NULL), "read_buf malloc succeeded");
+ read_buf = (int *)HDcalloc(buf_size, sizeof(int));
+ VRFY((read_buf != NULL), "read_buf HDcalloc succeeded");
/* setup file access template */
acc_tpl = create_faccess_plist(comm, info, facc_type);
@@ -4219,19 +4219,19 @@ dataset_atomicity(void)
VRFY((ret >= 0), "H5D close succeeded");
/* release data buffers */
- if(write_buf) free(write_buf);
- if(read_buf) free(read_buf);
+ if(write_buf) HDfree(write_buf);
+ if(read_buf) HDfree(read_buf);
/* open dataset2 (non-contiguous case) */
dataset2 = H5Dopen2(fid, DATASETNAME6, H5P_DEFAULT);
VRFY((dataset2 >= 0), "H5Dopen2 succeeded");
/* allocate memory for data buffer */
- write_buf = (int *)calloc(buf_size, sizeof(int));
- VRFY((write_buf != NULL), "write_buf malloc succeeded");
+ write_buf = (int *)HDcalloc(buf_size, sizeof(int));
+ VRFY((write_buf != NULL), "write_buf HDcalloc succeeded");
/* allocate memory for data buffer */
- read_buf = (int *)calloc(buf_size, sizeof(int));
- VRFY((read_buf != NULL), "read_buf malloc succeeded");
+ read_buf = (int *)HDcalloc(buf_size, sizeof(int));
+ VRFY((read_buf != NULL), "read_buf HDcalloc succeeded");
for (i=0 ; i<buf_size ; i++) {
write_buf[i] = 5;
@@ -4341,8 +4341,8 @@ dataset_atomicity(void)
VRFY((ret >= 0), "H5Sclose succeeded");
/* release data buffers */
- if(write_buf) free(write_buf);
- if(read_buf) free(read_buf);
+ if(write_buf) HDfree(write_buf);
+ if(read_buf) HDfree(read_buf);
ret = H5Fclose(fid);
VRFY((ret >= 0), "H5Fclose succeeded");
diff --git a/testpar/t_filter_read.c b/testpar/t_filter_read.c
index f38b30e..7e782ce 100644
--- a/testpar/t_filter_read.c
+++ b/testpar/t_filter_read.c
@@ -186,8 +186,8 @@ filter_read_internal(const char *filename, hid_t dcpl,
hrc = H5Fclose (file);
VRFY(hrc>=0, "H5Fclose");
- free(points);
- free(check);
+ HDfree(points);
+ HDfree(check);
MPI_Barrier(MPI_COMM_WORLD);
}
diff --git a/testpar/t_mpi.c b/testpar/t_mpi.c
index cd61e1e..7bd2f58 100644
--- a/testpar/t_mpi.c
+++ b/testpar/t_mpi.c
@@ -31,11 +31,11 @@
/* FILENAME and filenames must have the same number of names */
const char *FILENAME[2]={
- "MPItest",
- NULL};
-char filenames[2][200];
-int nerrors = 0;
-hid_t fapl; /* file access property list */
+ "MPItest",
+ NULL};
+char filenames[2][200];
+int nerrors = 0;
+hid_t fapl; /* file access property list */
/* protocols */
static int errors_sum(int nerrs);
@@ -49,10 +49,10 @@ test_mpio_overlap_writes(char *filename)
MPI_Comm comm;
MPI_Info info = MPI_INFO_NULL;
int color, mrc;
- MPI_File fh;
+ MPI_File fh;
int i;
int vrfyerrs, nerrs;
- unsigned char buf[4093]; /* use some prime number for size */
+ unsigned char buf[4093]; /* use some prime number for size */
int bufsize = sizeof(buf);
MPI_Offset stride;
MPI_Offset mpi_off;
@@ -60,8 +60,8 @@ test_mpio_overlap_writes(char *filename)
if (VERBOSE_MED)
- printf("MPIO independent overlapping writes test on file %s\n",
- filename);
+ printf("MPIO independent overlapping writes test on file %s\n",
+ filename);
nerrs = 0;
/* set up MPI parameters */
@@ -70,10 +70,10 @@ test_mpio_overlap_writes(char *filename)
/* Need at least 2 processes */
if (mpi_size < 2) {
- if (MAINPROCESS)
- printf("Need at least 2 processes to run MPIO test.\n");
- printf(" -SKIP- \n");
- return 0;
+ if (MAINPROCESS)
+ printf("Need at least 2 processes to run MPIO test.\n");
+ printf(" -SKIP- \n");
+ return 0;
}
/* splits processes 0 to n-2 into one comm. and the last one into another */
@@ -82,85 +82,85 @@ test_mpio_overlap_writes(char *filename)
VRFY((mrc==MPI_SUCCESS), "Comm_split succeeded");
if (color==0){
- /* First n-1 processes (color==0) open a file and write it */
- mrc = MPI_File_open(comm, filename, MPI_MODE_CREATE|MPI_MODE_RDWR,
- info, &fh);
- VRFY((mrc==MPI_SUCCESS), "");
-
- stride = 1;
- mpi_off = mpi_rank*stride;
- while (mpi_off < MPIO_TEST_WRITE_SIZE){
- /* make sure the write does not exceed the TEST_WRITE_SIZE */
- if (mpi_off+stride > MPIO_TEST_WRITE_SIZE)
- stride = MPIO_TEST_WRITE_SIZE - mpi_off;
-
- /* set data to some trivial pattern for easy verification */
- for (i=0; i<stride; i++)
- buf[i] = (unsigned char)(mpi_off+i);
- mrc = MPI_File_write_at(fh, mpi_off, buf, (int)stride, MPI_BYTE,
- &mpi_stat);
- VRFY((mrc==MPI_SUCCESS), "");
-
- /* move the offset pointer to last byte written by all processes */
- mpi_off += (mpi_size - 1 - mpi_rank) * stride;
-
- /* Increase chunk size without exceeding buffer size. */
- /* Then move the starting offset for next write. */
- stride *= 2;
- if (stride > bufsize)
- stride = bufsize;
- mpi_off += mpi_rank*stride;
- }
-
- /* close file and free the communicator */
- mrc = MPI_File_close(&fh);
- VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
- mrc = MPI_Comm_free(&comm);
- VRFY((mrc==MPI_SUCCESS), "MPI_Comm_free");
-
- /* sync with the other waiting processes */
- mrc = MPI_Barrier(MPI_COMM_WORLD);
- VRFY((mrc==MPI_SUCCESS), "Sync after writes");
- }else{
- /* last process waits till writes are done,
- * then opens file to verify data.
- */
- mrc = MPI_Barrier(MPI_COMM_WORLD);
- VRFY((mrc==MPI_SUCCESS), "Sync after writes");
-
- mrc = MPI_File_open(comm, filename, MPI_MODE_RDONLY,
- info, &fh);
- VRFY((mrc==MPI_SUCCESS), "");
-
- stride = bufsize;
- for (mpi_off=0; mpi_off < MPIO_TEST_WRITE_SIZE; mpi_off += bufsize){
- /* make sure it does not read beyond end of data */
- if (mpi_off+stride > MPIO_TEST_WRITE_SIZE)
- stride = MPIO_TEST_WRITE_SIZE - mpi_off;
- mrc = MPI_File_read_at(fh, mpi_off, buf, (int)stride, MPI_BYTE,
- &mpi_stat);
- VRFY((mrc==MPI_SUCCESS), "");
- vrfyerrs=0;
- for (i=0; i<stride; i++){
- unsigned char expected;
- expected = (unsigned char)(mpi_off+i);
- if ((expected != buf[i]) &&
- (vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED)) {
- printf("proc %d: found data error at [%ld], expect %u, got %u\n",
- mpi_rank, (long)(mpi_off+i), expected, buf[i]);
- }
- }
- if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
- printf("proc %d: [more errors ...]\n", mpi_rank);
+ /* First n-1 processes (color==0) open a file and write it */
+ mrc = MPI_File_open(comm, filename, MPI_MODE_CREATE|MPI_MODE_RDWR,
+ info, &fh);
+ VRFY((mrc==MPI_SUCCESS), "");
+
+ stride = 1;
+ mpi_off = mpi_rank*stride;
+ while (mpi_off < MPIO_TEST_WRITE_SIZE){
+ /* make sure the write does not exceed the TEST_WRITE_SIZE */
+ if (mpi_off+stride > MPIO_TEST_WRITE_SIZE)
+ stride = MPIO_TEST_WRITE_SIZE - mpi_off;
+
+ /* set data to some trivial pattern for easy verification */
+ for (i=0; i<stride; i++)
+ buf[i] = (unsigned char)(mpi_off+i);
+ mrc = MPI_File_write_at(fh, mpi_off, buf, (int)stride, MPI_BYTE,
+ &mpi_stat);
+ VRFY((mrc==MPI_SUCCESS), "");
+
+ /* move the offset pointer to last byte written by all processes */
+ mpi_off += (mpi_size - 1 - mpi_rank) * stride;
+
+ /* Increase chunk size without exceeding buffer size. */
+ /* Then move the starting offset for next write. */
+ stride *= 2;
+ if (stride > bufsize)
+ stride = bufsize;
+ mpi_off += mpi_rank*stride;
+ }
+
+ /* close file and free the communicator */
+ mrc = MPI_File_close(&fh);
+ VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
+ mrc = MPI_Comm_free(&comm);
+ VRFY((mrc==MPI_SUCCESS), "MPI_Comm_free");
- nerrs += vrfyerrs;
- }
+ /* sync with the other waiting processes */
+ mrc = MPI_Barrier(MPI_COMM_WORLD);
+ VRFY((mrc==MPI_SUCCESS), "Sync after writes");
+ }else{
+ /* last process waits till writes are done,
+ * then opens file to verify data.
+ */
+ mrc = MPI_Barrier(MPI_COMM_WORLD);
+ VRFY((mrc==MPI_SUCCESS), "Sync after writes");
+
+ mrc = MPI_File_open(comm, filename, MPI_MODE_RDONLY,
+ info, &fh);
+ VRFY((mrc==MPI_SUCCESS), "");
+
+ stride = bufsize;
+ for (mpi_off=0; mpi_off < MPIO_TEST_WRITE_SIZE; mpi_off += bufsize){
+ /* make sure it does not read beyond end of data */
+ if (mpi_off+stride > MPIO_TEST_WRITE_SIZE)
+ stride = MPIO_TEST_WRITE_SIZE - mpi_off;
+ mrc = MPI_File_read_at(fh, mpi_off, buf, (int)stride, MPI_BYTE,
+ &mpi_stat);
+ VRFY((mrc==MPI_SUCCESS), "");
+ vrfyerrs=0;
+ for (i=0; i<stride; i++){
+ unsigned char expected;
+ expected = (unsigned char)(mpi_off+i);
+ if ((expected != buf[i]) &&
+ (vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED)) {
+ printf("proc %d: found data error at [%ld], expect %u, got %u\n",
+ mpi_rank, (long)(mpi_off+i), expected, buf[i]);
+ }
+ }
+ if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
+ printf("proc %d: [more errors ...]\n", mpi_rank);
+
+ nerrs += vrfyerrs;
+ }
- /* close file and free the communicator */
- mrc = MPI_File_close(&fh);
- VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
- mrc = MPI_Comm_free(&comm);
- VRFY((mrc==MPI_SUCCESS), "MPI_Comm_free");
+ /* close file and free the communicator */
+ mrc = MPI_File_close(&fh);
+ VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
+ mrc = MPI_Comm_free(&comm);
+ VRFY((mrc==MPI_SUCCESS), "MPI_Comm_free");
}
/*
@@ -194,12 +194,12 @@ test_mpio_gb_file(char *filename)
int mpi_size, mpi_rank;
MPI_Info info = MPI_INFO_NULL;
int mrc;
- MPI_File fh;
+ MPI_File fh;
int i, j, n;
int vrfyerrs;
- int writerrs; /* write errors */
+ int writerrs; /* write errors */
int nerrs;
- int ntimes; /* how many times */
+ int ntimes; /* how many times */
char *buf = NULL;
char expected;
MPI_Offset size;
@@ -225,186 +225,186 @@ test_mpio_gb_file(char *filename)
* Verify the sizeof MPI_Offset and correctness of handling multiple GB
* sizes.
*/
- if (MAINPROCESS){ /* only process 0 needs to check it*/
- printf("MPI_Offset is %s %d bytes integeral type\n",
- is_signed ? "signed" : "unsigned", (int)sizeof(MPI_Offset));
- if (sizeof_mpi_offset <= 4 && is_signed){
- printf("Skipped 2GB range test "
- "because MPI_Offset cannot support it\n");
- }else {
- /* verify correctness of assigning 2GB sizes */
- mpi_off = 2 * 1024 * (MPI_Offset)MB;
- INFO((mpi_off>0), "2GB OFFSET assignment no overflow");
- INFO((mpi_off-1)==TWO_GB_LESS1, "2GB OFFSET assignment succeed");
-
- /* verify correctness of increasing from below 2 GB to above 2GB */
- mpi_off = TWO_GB_LESS1;
- for (i=0; i < 3; i++){
- mpi_off_old = mpi_off;
- mpi_off = mpi_off + 1;
- /* no overflow */
- INFO((mpi_off>0), "2GB OFFSET increment no overflow");
- /* correct inc. */
- INFO((mpi_off-1)==mpi_off_old, "2GB OFFSET increment succeed");
- }
- }
+ if (MAINPROCESS){ /* only process 0 needs to check it*/
+ printf("MPI_Offset is %s %d bytes integeral type\n",
+ is_signed ? "signed" : "unsigned", (int)sizeof(MPI_Offset));
+ if (sizeof_mpi_offset <= 4 && is_signed){
+ printf("Skipped 2GB range test "
+ "because MPI_Offset cannot support it\n");
+ }else {
+ /* verify correctness of assigning 2GB sizes */
+ mpi_off = 2 * 1024 * (MPI_Offset)MB;
+ INFO((mpi_off>0), "2GB OFFSET assignment no overflow");
+ INFO((mpi_off-1)==TWO_GB_LESS1, "2GB OFFSET assignment succeed");
+
+ /* verify correctness of increasing from below 2 GB to above 2GB */
+ mpi_off = TWO_GB_LESS1;
+ for (i=0; i < 3; i++){
+ mpi_off_old = mpi_off;
+ mpi_off = mpi_off + 1;
+ /* no overflow */
+ INFO((mpi_off>0), "2GB OFFSET increment no overflow");
+ /* correct inc. */
+ INFO((mpi_off-1)==mpi_off_old, "2GB OFFSET increment succeed");
+ }
+ }
- if (sizeof_mpi_offset <= 4){
- printf("Skipped 4GB range test "
- "because MPI_Offset cannot support it\n");
- }else {
- /* verify correctness of assigning 4GB sizes */
- mpi_off = 4 * 1024 * (MPI_Offset)MB;
- INFO((mpi_off>0), "4GB OFFSET assignment no overflow");
- INFO((mpi_off-1)==FOUR_GB_LESS1, "4GB OFFSET assignment succeed");
-
- /* verify correctness of increasing from below 4 GB to above 4 GB */
- mpi_off = FOUR_GB_LESS1;
- for (i=0; i < 3; i++){
- mpi_off_old = mpi_off;
- mpi_off = mpi_off + 1;
- /* no overflow */
- INFO((mpi_off>0), "4GB OFFSET increment no overflow");
- /* correct inc. */
- INFO((mpi_off-1)==mpi_off_old, "4GB OFFSET increment succeed");
- }
- }
+ if (sizeof_mpi_offset <= 4){
+ printf("Skipped 4GB range test "
+ "because MPI_Offset cannot support it\n");
+ }else {
+ /* verify correctness of assigning 4GB sizes */
+ mpi_off = 4 * 1024 * (MPI_Offset)MB;
+ INFO((mpi_off>0), "4GB OFFSET assignment no overflow");
+ INFO((mpi_off-1)==FOUR_GB_LESS1, "4GB OFFSET assignment succeed");
+
+ /* verify correctness of increasing from below 4 GB to above 4 GB */
+ mpi_off = FOUR_GB_LESS1;
+ for (i=0; i < 3; i++){
+ mpi_off_old = mpi_off;
+ mpi_off = mpi_off + 1;
+ /* no overflow */
+ INFO((mpi_off>0), "4GB OFFSET increment no overflow");
+ /* correct inc. */
+ INFO((mpi_off-1)==mpi_off_old, "4GB OFFSET increment succeed");
+ }
+ }
}
/*
* Verify if we can write to a file of multiple GB sizes.
*/
if (VERBOSE_MED)
- printf("MPIO GB file test %s\n", filename);
+ printf("MPIO GB file test %s\n", filename);
if (sizeof_mpi_offset <= 4){
- printf("Skipped GB file range test "
- "because MPI_Offset cannot support it\n");
+ printf("Skipped GB file range test "
+ "because MPI_Offset cannot support it\n");
}else{
- buf = malloc(MB);
- VRFY((buf!=NULL), "malloc succeed");
-
- /* open a new file. Remove it first in case it exists. */
- /* Must delete because MPI_File_open does not have a Truncate mode. */
- /* Don't care if it has error. */
- MPI_File_delete(filename, MPI_INFO_NULL);
- MPI_Barrier(MPI_COMM_WORLD); /* prevent racing condition */
-
- mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_CREATE|MPI_MODE_RDWR,
- info, &fh);
- VRFY((mrc==MPI_SUCCESS), "MPI_FILE_OPEN");
-
- printf("MPIO GB file write test %s\n", filename);
-
- /* instead of writing every bytes of the file, we will just write
- * some data around the 2 and 4 GB boundaries. That should cover
- * potential integer overflow and filesystem size limits.
- */
- writerrs = 0;
- for (n=2; n <= 4; n+=2){
- ntimes = GB/MB*n/mpi_size + 1;
- for (i=ntimes-2; i <= ntimes; i++){
- mpi_off = (i*mpi_size + mpi_rank)*(MPI_Offset)MB;
- if (VERBOSE_MED)
- HDfprintf(stdout,"proc %d: write to mpi_off=%016llx, %lld\n",
- mpi_rank, mpi_off, mpi_off);
- /* set data to some trivial pattern for easy verification */
- for (j=0; j<MB; j++)
- *(buf+j) = i*mpi_size + mpi_rank;
- if (VERBOSE_MED)
- HDfprintf(stdout,"proc %d: writing %d bytes at offset %lld\n",
- mpi_rank, MB, mpi_off);
- mrc = MPI_File_write_at(fh, mpi_off, buf, MB, MPI_BYTE, &mpi_stat);
- INFO((mrc==MPI_SUCCESS), "GB size file write");
- if (mrc!=MPI_SUCCESS)
- writerrs++;
- }
- }
-
- /* close file and free the communicator */
- mrc = MPI_File_close(&fh);
- VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
-
- mrc = MPI_Barrier(MPI_COMM_WORLD);
- VRFY((mrc==MPI_SUCCESS), "Sync after writes");
-
- /*
- * Verify if we can read the multiple GB file just created.
- */
- /* open it again to verify the data written */
- /* but only if there was no write errors */
- printf("MPIO GB file read test %s\n", filename);
- if (errors_sum(writerrs)>0){
- printf("proc %d: Skip read test due to previous write errors\n",
- mpi_rank);
- goto finish;
- }
- mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_RDONLY, info, &fh);
- VRFY((mrc==MPI_SUCCESS), "");
+ buf = HDmalloc(MB);
+ VRFY((buf!=NULL), "malloc succeed");
+
+ /* open a new file. Remove it first in case it exists. */
+ /* Must delete because MPI_File_open does not have a Truncate mode. */
+ /* Don't care if it has error. */
+ MPI_File_delete(filename, MPI_INFO_NULL);
+ MPI_Barrier(MPI_COMM_WORLD); /* prevent racing condition */
+
+ mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_CREATE|MPI_MODE_RDWR,
+ info, &fh);
+ VRFY((mrc==MPI_SUCCESS), "MPI_FILE_OPEN");
+
+ printf("MPIO GB file write test %s\n", filename);
+
+ /* instead of writing every bytes of the file, we will just write
+ * some data around the 2 and 4 GB boundaries. That should cover
+ * potential integer overflow and filesystem size limits.
+ */
+ writerrs = 0;
+ for (n=2; n <= 4; n+=2){
+ ntimes = GB/MB*n/mpi_size + 1;
+ for (i=ntimes-2; i <= ntimes; i++){
+ mpi_off = (i*mpi_size + mpi_rank)*(MPI_Offset)MB;
+ if (VERBOSE_MED)
+ HDfprintf(stdout,"proc %d: write to mpi_off=%016llx, %lld\n",
+ mpi_rank, mpi_off, mpi_off);
+ /* set data to some trivial pattern for easy verification */
+ for (j=0; j<MB; j++)
+ *(buf+j) = i*mpi_size + mpi_rank;
+ if (VERBOSE_MED)
+ HDfprintf(stdout,"proc %d: writing %d bytes at offset %lld\n",
+ mpi_rank, MB, mpi_off);
+ mrc = MPI_File_write_at(fh, mpi_off, buf, MB, MPI_BYTE, &mpi_stat);
+ INFO((mrc==MPI_SUCCESS), "GB size file write");
+ if (mrc!=MPI_SUCCESS)
+ writerrs++;
+ }
+ }
- /* Only read back parts of the file that have been written. */
- for (n=2; n <= 4; n+=2){
- ntimes = GB/MB*n/mpi_size + 1;
- for (i=ntimes-2; i <= ntimes; i++){
- mpi_off = (i*mpi_size + (mpi_size - mpi_rank - 1))*(MPI_Offset)MB;
- if (VERBOSE_MED)
- HDfprintf(stdout,"proc %d: read from mpi_off=%016llx, %lld\n",
- mpi_rank, mpi_off, mpi_off);
- mrc = MPI_File_read_at(fh, mpi_off, buf, MB, MPI_BYTE, &mpi_stat);
- INFO((mrc==MPI_SUCCESS), "GB size file read");
- expected = i*mpi_size + (mpi_size - mpi_rank - 1);
- vrfyerrs=0;
- for (j=0; j<MB; j++){
- if ((*(buf+j) != expected) &&
- (vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED)){
- printf("proc %d: found data error at [%ld+%d], expect %d, got %d\n",
- mpi_rank, (long)mpi_off, j, expected, *(buf+j));
- }
- }
- if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
- printf("proc %d: [more errors ...]\n", mpi_rank);
-
- nerrs += vrfyerrs;
- }
- }
+ /* close file and free the communicator */
+ mrc = MPI_File_close(&fh);
+ VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
+
+ mrc = MPI_Barrier(MPI_COMM_WORLD);
+ VRFY((mrc==MPI_SUCCESS), "Sync after writes");
+
+ /*
+ * Verify if we can read the multiple GB file just created.
+ */
+ /* open it again to verify the data written */
+ /* but only if there was no write errors */
+ printf("MPIO GB file read test %s\n", filename);
+ if (errors_sum(writerrs)>0){
+ printf("proc %d: Skip read test due to previous write errors\n",
+ mpi_rank);
+ goto finish;
+ }
+ mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_RDONLY, info, &fh);
+ VRFY((mrc==MPI_SUCCESS), "");
+
+ /* Only read back parts of the file that have been written. */
+ for (n=2; n <= 4; n+=2){
+ ntimes = GB/MB*n/mpi_size + 1;
+ for (i=ntimes-2; i <= ntimes; i++){
+ mpi_off = (i*mpi_size + (mpi_size - mpi_rank - 1))*(MPI_Offset)MB;
+ if (VERBOSE_MED)
+ HDfprintf(stdout,"proc %d: read from mpi_off=%016llx, %lld\n",
+ mpi_rank, mpi_off, mpi_off);
+ mrc = MPI_File_read_at(fh, mpi_off, buf, MB, MPI_BYTE, &mpi_stat);
+ INFO((mrc==MPI_SUCCESS), "GB size file read");
+ expected = i*mpi_size + (mpi_size - mpi_rank - 1);
+ vrfyerrs=0;
+ for (j=0; j<MB; j++){
+ if ((*(buf+j) != expected) &&
+ (vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED)){
+ printf("proc %d: found data error at [%ld+%d], expect %d, got %d\n",
+ mpi_rank, (long)mpi_off, j, expected, *(buf+j));
+ }
+ }
+ if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
+ printf("proc %d: [more errors ...]\n", mpi_rank);
+
+ nerrs += vrfyerrs;
+ }
+ }
- /* close file and free the communicator */
- mrc = MPI_File_close(&fh);
- VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
+ /* close file and free the communicator */
+ mrc = MPI_File_close(&fh);
+ VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
- /*
- * one more sync to ensure all processes have done reading
- * before ending this test.
- */
- mrc = MPI_Barrier(MPI_COMM_WORLD);
- VRFY((mrc==MPI_SUCCESS), "Sync before leaving test");
+ /*
+ * one more sync to ensure all processes have done reading
+ * before ending this test.
+ */
+ mrc = MPI_Barrier(MPI_COMM_WORLD);
+ VRFY((mrc==MPI_SUCCESS), "Sync before leaving test");
printf("Test if MPI_File_get_size works correctly with %s\n", filename);
- mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_RDONLY, info, &fh);
+ mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_RDONLY, info, &fh);
VRFY((mrc==MPI_SUCCESS), "");
- if (MAINPROCESS){ /* only process 0 needs to check it*/
+ if (MAINPROCESS){ /* only process 0 needs to check it*/
mrc = MPI_File_get_size(fh, &size);
- VRFY((mrc==MPI_SUCCESS), "");
+ VRFY((mrc==MPI_SUCCESS), "");
VRFY((size == mpi_off+MB), "MPI_File_get_size doesn't return correct file size.");
}
- /* close file and free the communicator */
- mrc = MPI_File_close(&fh);
- VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
+ /* close file and free the communicator */
+ mrc = MPI_File_close(&fh);
+ VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
- /*
- * one more sync to ensure all processes have done reading
- * before ending this test.
- */
- mrc = MPI_Barrier(MPI_COMM_WORLD);
- VRFY((mrc==MPI_SUCCESS), "Sync before leaving test");
+ /*
+ * one more sync to ensure all processes have done reading
+ * before ending this test.
+ */
+ mrc = MPI_Barrier(MPI_COMM_WORLD);
+ VRFY((mrc==MPI_SUCCESS), "Sync before leaving test");
}
finish:
if (buf)
- HDfree(buf);
+ HDfree(buf);
return (nerrs);
}
@@ -426,11 +426,11 @@ finish:
* Each process writes something, then reads all data back.
*/
-#define DIMSIZE 32 /* Dimension size. */
+#define DIMSIZE 32 /* Dimension size. */
#define PRINTID printf("Proc %d: ", mpi_rank)
#define USENONE 0
-#define USEATOM 1 /* request atomic I/O */
-#define USEFSYNC 2 /* request file_sync */
+#define USEATOM 1 /* request atomic I/O */
+#define USEFSYNC 2 /* request file_sync */
static int
@@ -445,7 +445,7 @@ test_mpio_1wMr(char *filename, int special_request)
unsigned char writedata[DIMSIZE], readdata[DIMSIZE];
unsigned char expect_val;
int i, irank;
- int nerrs = 0; /* number of errors */
+ int nerrs = 0; /* number of errors */
int atomicity;
MPI_Offset mpi_off;
MPI_Status mpi_stat;
@@ -455,35 +455,35 @@ test_mpio_1wMr(char *filename, int special_request)
if (MAINPROCESS && VERBOSE_MED){
printf("Testing one process writes, all processes read.\n");
- printf("Using %d processes accessing file %s\n", mpi_size, filename);
+ printf("Using %d processes accessing file %s\n", mpi_size, filename);
printf(" (Filename can be specified via program argument)\n");
}
/* show the hostname so that we can tell where the processes are running */
if (VERBOSE_DEF){
- if (gethostname(hostname, 128) < 0){
- PRINTID;
- printf("gethostname failed\n");
- return 1;
- }
- PRINTID;
- printf("hostname=%s\n", hostname);
+ if (gethostname(hostname, 128) < 0){
+ PRINTID;
+ printf("gethostname failed\n");
+ return 1;
+ }
+ PRINTID;
+ printf("hostname=%s\n", hostname);
}
/* Delete any old file in order to start anew. */
/* Must delete because MPI_File_open does not have a Truncate mode. */
/* Don't care if it has error. */
MPI_File_delete(filename, MPI_INFO_NULL);
- MPI_Barrier(MPI_COMM_WORLD); /* prevent racing condition */
+ MPI_Barrier(MPI_COMM_WORLD); /* prevent racing condition */
if ((mpi_err = MPI_File_open(MPI_COMM_WORLD, filename,
- MPI_MODE_RDWR | MPI_MODE_CREATE ,
- MPI_INFO_NULL, &fh))
- != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- PRINTID;
- printf("MPI_File_open failed (%s)\n", mpi_err_str);
- return 1;
+ MPI_MODE_RDWR | MPI_MODE_CREATE ,
+ MPI_INFO_NULL, &fh))
+ != MPI_SUCCESS){
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ PRINTID;
+ printf("MPI_File_open failed (%s)\n", mpi_err_str);
+ return 1;
}
if (special_request & USEATOM){
@@ -492,31 +492,31 @@ if (special_request & USEATOM){
* should not need this.
* ==================================================*/
if ((mpi_err = MPI_File_get_atomicity(fh, &atomicity)) != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- PRINTID;
- printf("MPI_File_get_atomicity failed (%s)\n", mpi_err_str);
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ PRINTID;
+ printf("MPI_File_get_atomicity failed (%s)\n", mpi_err_str);
}
if (VERBOSE_HI)
- printf("Initial atomicity = %d\n", atomicity);
+ printf("Initial atomicity = %d\n", atomicity);
if ((mpi_err = MPI_File_set_atomicity(fh, 1)) != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- PRINTID;
- printf("MPI_File_set_atomicity failed (%s)\n", mpi_err_str);
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ PRINTID;
+ printf("MPI_File_set_atomicity failed (%s)\n", mpi_err_str);
}
if ((mpi_err = MPI_File_get_atomicity(fh, &atomicity)) != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- PRINTID;
- printf("MPI_File_get_atomicity failed (%s)\n", mpi_err_str);
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ PRINTID;
+ printf("MPI_File_get_atomicity failed (%s)\n", mpi_err_str);
}
if (VERBOSE_HI)
- printf("After set_atomicity atomicity = %d\n", atomicity);
+ printf("After set_atomicity atomicity = %d\n", atomicity);
}
/* This barrier is not necessary but do it anyway. */
MPI_Barrier(MPI_COMM_WORLD);
if (VERBOSE_HI){
- PRINTID;
- printf("between MPI_Barrier and MPI_File_write_at\n");
+ PRINTID;
+ printf("between MPI_Barrier and MPI_File_write_at\n");
}
/* ==================================================
@@ -525,31 +525,31 @@ if (special_request & USEATOM){
* ==================================================*/
irank=0;
for (i=0; i < DIMSIZE; i++)
- writedata[i] = irank*DIMSIZE + i;
+ writedata[i] = irank*DIMSIZE + i;
mpi_off = irank*DIMSIZE;
/* Only one process writes */
if (mpi_rank==irank){
- if (VERBOSE_HI){
- PRINTID; printf("wrote %d bytes at %ld\n", DIMSIZE, (long)mpi_off);
- }
- if ((mpi_err = MPI_File_write_at(fh, mpi_off, writedata, DIMSIZE,
- MPI_BYTE, &mpi_stat))
- != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- PRINTID;
- printf("MPI_File_write_at offset(%ld), bytes (%d), failed (%s)\n",
- (long) mpi_off, DIMSIZE, mpi_err_str);
- return 1;
- };
+ if (VERBOSE_HI){
+ PRINTID; printf("wrote %d bytes at %ld\n", DIMSIZE, (long)mpi_off);
+ }
+ if ((mpi_err = MPI_File_write_at(fh, mpi_off, writedata, DIMSIZE,
+ MPI_BYTE, &mpi_stat))
+ != MPI_SUCCESS){
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ PRINTID;
+ printf("MPI_File_write_at offset(%ld), bytes (%d), failed (%s)\n",
+ (long) mpi_off, DIMSIZE, mpi_err_str);
+ return 1;
+ };
};
/* Bcast the return code and */
/* make sure all writing are done before reading. */
MPI_Bcast(&mpi_err, 1, MPI_INT, irank, MPI_COMM_WORLD);
if (VERBOSE_HI){
- PRINTID;
- printf("MPI_Bcast: mpi_err = %d\n", mpi_err);
+ PRINTID;
+ printf("MPI_Bcast: mpi_err = %d\n", mpi_err);
}
if (special_request & USEFSYNC){
@@ -558,19 +558,19 @@ if (special_request & USEFSYNC){
* should not need this.
* ==================================================*/
if (VERBOSE_HI)
- printf("Apply MPI_File_sync\n");
+ printf("Apply MPI_File_sync\n");
/* call file_sync to force the write out */
if ((mpi_err = MPI_File_sync(fh)) != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- PRINTID;
- printf("MPI_File_sync failed (%s)\n", mpi_err_str);
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ PRINTID;
+ printf("MPI_File_sync failed (%s)\n", mpi_err_str);
}
MPI_Barrier(MPI_COMM_WORLD);
/* call file_sync to force the write out */
if ((mpi_err = MPI_File_sync(fh)) != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- PRINTID;
- printf("MPI_File_sync failed (%s)\n", mpi_err_str);
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ PRINTID;
+ printf("MPI_File_sync failed (%s)\n", mpi_err_str);
}
}
@@ -578,8 +578,8 @@ if (special_request & USEFSYNC){
/* should take care of it. Do it anyway. */
MPI_Barrier(MPI_COMM_WORLD);
if (VERBOSE_HI){
- PRINTID;
- printf("after MPI_Barrier\n");
+ PRINTID;
+ printf("after MPI_Barrier\n");
}
/* ==================================================
@@ -588,29 +588,29 @@ if (special_request & USEFSYNC){
irank=0;
mpi_off = irank*DIMSIZE;
if ((mpi_err = MPI_File_read_at(fh, mpi_off, readdata, DIMSIZE, MPI_BYTE,
- &mpi_stat))
- != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- PRINTID;
- printf("MPI_File_read_at offset(%ld), bytes (%d), failed (%s)\n",
- (long) mpi_off, DIMSIZE, mpi_err_str);
- return 1;
+ &mpi_stat))
+ != MPI_SUCCESS){
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ PRINTID;
+ printf("MPI_File_read_at offset(%ld), bytes (%d), failed (%s)\n",
+ (long) mpi_off, DIMSIZE, mpi_err_str);
+ return 1;
};
for (i=0; i < DIMSIZE; i++){
- expect_val = irank*DIMSIZE + i;
- if (readdata[i] != expect_val){
- PRINTID;
- printf("read data[%d:%d] got %02x, expect %02x\n", irank, i,
- readdata[i], expect_val);
- nerrs++;
- }
+ expect_val = irank*DIMSIZE + i;
+ if (readdata[i] != expect_val){
+ PRINTID;
+ printf("read data[%d:%d] got %02x, expect %02x\n", irank, i,
+ readdata[i], expect_val);
+ nerrs++;
+ }
}
MPI_File_close(&fh);
if (VERBOSE_HI){
- PRINTID;
- printf("%d data errors detected\n", nerrs);
+ PRINTID;
+ printf("%d data errors detected\n", nerrs);
}
mpi_err = MPI_Barrier(MPI_COMM_WORLD);
@@ -628,18 +628,18 @@ and this platform.
1. Details for the test:
1) Create two derived datatypes with MPI_Type_hindexed:
datatype1:
- count = 1, blocklens = 1, offsets = 0,
- base type = MPI_BYTE(essentially a char)
+ count = 1, blocklens = 1, offsets = 0,
+ base type = MPI_BYTE(essentially a char)
datatype2:
- count = 1, blocklens = 1, offsets = 1(byte),
- base type = MPI_BYTE
+ count = 1, blocklens = 1, offsets = 1(byte),
+ base type = MPI_BYTE
2) Using these two derived datatypes,
Build another derived datatype with MPI_Type_struct:
advtype: derived from datatype1 and datatype2
advtype:
- count = 2, blocklens[0] = 1, blocklens[1]=1,
- offsets[0] = 0, offsets[1] = 1(byte),
+ count = 2, blocklens[0] = 1, blocklens[1]=1,
+ offsets[0] = 0, offsets[1] = 1(byte),
bas_type[0]=datatype1,
bas_type[1] = datatype2;
@@ -678,7 +678,7 @@ static int test_mpio_derived_dtype(char *filename) {
int mpi_err_strlen;
int mpi_err;
int i;
- int nerrors = 0; /* number of errors */
+ int nerrors = 0; /* number of errors */
MPI_Datatype etype,filetype;
MPI_Datatype adv_filetype,bas_filetype[2];
MPI_Datatype etypenew, filetypenew;
@@ -702,12 +702,12 @@ static int test_mpio_derived_dtype(char *filename) {
if ((mpi_err = MPI_File_open(MPI_COMM_WORLD, filename,
- MPI_MODE_RDWR | MPI_MODE_CREATE,
- MPI_INFO_NULL, &fh))
- != MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_File_open failed (%s)\n", mpi_err_str);
- return 1;
+ MPI_MODE_RDWR | MPI_MODE_CREATE,
+ MPI_INFO_NULL, &fh))
+ != MPI_SUCCESS){
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ printf("MPI_File_open failed (%s)\n", mpi_err_str);
+ return 1;
}
disp = 0;
@@ -719,15 +719,15 @@ static int test_mpio_derived_dtype(char *filename) {
if((mpi_err= MPI_Type_hindexed(count,blocklens,offsets,MPI_BYTE,&filetype))
!= MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_Type_contiguous failed (%s)\n", mpi_err_str);
- return 1;
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ printf("MPI_Type_contiguous failed (%s)\n", mpi_err_str);
+ return 1;
}
if((mpi_err=MPI_Type_commit(&filetype))!=MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_Type_commit failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_Type_commit failed (%s)\n", mpi_err_str);
+ return 1;
}
count = 1;
@@ -735,15 +735,15 @@ static int test_mpio_derived_dtype(char *filename) {
offsets[0] = 1;
if((mpi_err= MPI_Type_hindexed(count,blocklens,offsets,MPI_BYTE,&filetypenew))
!= MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_Type_contiguous failed (%s)\n", mpi_err_str);
- return 1;
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ printf("MPI_Type_contiguous failed (%s)\n", mpi_err_str);
+ return 1;
}
if((mpi_err=MPI_Type_commit(&filetypenew))!=MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_Type_commit failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_Type_commit failed (%s)\n", mpi_err_str);
+ return 1;
}
outcount = 2;
@@ -756,48 +756,48 @@ static int test_mpio_derived_dtype(char *filename) {
if((mpi_err= MPI_Type_struct(outcount,adv_blocklens,adv_disp,bas_filetype,&adv_filetype))
!= MPI_SUCCESS){
- MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_Type_struct failed (%s)\n", mpi_err_str);
- return 1;
+ MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
+ printf("MPI_Type_struct failed (%s)\n", mpi_err_str);
+ return 1;
}
if((mpi_err=MPI_Type_commit(&adv_filetype))!=MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_Type_commit failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_Type_commit failed (%s)\n", mpi_err_str);
+ return 1;
}
if((mpi_err = MPI_File_set_view(fh,disp,etype,adv_filetype,"native",MPI_INFO_NULL))!= MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_File_set_view failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_File_set_view failed (%s)\n", mpi_err_str);
+ return 1;
}
if((mpi_err = MPI_File_write(fh,buf,3,MPI_BYTE,&Status))!= MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_File_write failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_File_write failed (%s)\n", mpi_err_str);
+ return 1;
;
}
if((mpi_err = MPI_File_close(&fh)) != MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_File_close failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_File_close failed (%s)\n", mpi_err_str);
+ return 1;
}
if((mpi_err = MPI_File_open(MPI_COMM_WORLD,filename,MPI_MODE_RDONLY,MPI_INFO_NULL,&fh)) != MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_File_open failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_File_open failed (%s)\n", mpi_err_str);
+ return 1;
}
if((mpi_err = MPI_File_set_view(fh,0,MPI_BYTE,MPI_BYTE,"native",MPI_INFO_NULL))!= MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_File_set_view failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_File_set_view failed (%s)\n", mpi_err_str);
+ return 1;
}
if((mpi_err = MPI_File_read(fh,outbuf,3,MPI_BYTE,&Status))!=MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
@@ -820,8 +820,8 @@ static int test_mpio_derived_dtype(char *filename) {
if((mpi_err = MPI_File_close(&fh)) != MPI_SUCCESS){
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
- printf("MPI_File_close failed (%s)\n", mpi_err_str);
- return 1;
+ printf("MPI_File_close failed (%s)\n", mpi_err_str);
+ return 1;
}
@@ -1005,55 +1005,55 @@ static int
parse_options(int argc, char **argv)
{
while (--argc){
- if (**(++argv) != '-'){
- break;
- }else{
- switch(*(*argv+1)){
- case 'v': if (*((*argv+1)+1))
- ParseTestVerbosity((*argv+1)+1);
- else
- SetTestVerbosity(VERBO_MED);
- break;
- case 'f': if (--argc < 1) {
- nerrors++;
- return(1);
- }
- if (**(++argv) == '-') {
- nerrors++;
- return(1);
- }
- paraprefix = *argv;
- break;
- case 'h': /* print help message--return with nerrors set */
- return(1);
- default: nerrors++;
- return(1);
- }
- }
+ if (**(++argv) != '-'){
+ break;
+ }else{
+ switch(*(*argv+1)){
+ case 'v': if (*((*argv+1)+1))
+ ParseTestVerbosity((*argv+1)+1);
+ else
+ SetTestVerbosity(VERBO_MED);
+ break;
+ case 'f': if (--argc < 1) {
+ nerrors++;
+ return(1);
+ }
+ if (**(++argv) == '-') {
+ nerrors++;
+ return(1);
+ }
+ paraprefix = *argv;
+ break;
+ case 'h': /* print help message--return with nerrors set */
+ return(1);
+ default: nerrors++;
+ return(1);
+ }
+ }
} /*while*/
/* compose the test filenames */
{
- int i, n;
- hid_t plist;
-
- plist = H5Pcreate (H5P_FILE_ACCESS);
- H5Pset_fapl_mpio(plist, MPI_COMM_WORLD, MPI_INFO_NULL);
- n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */
-
- for (i=0; i < n; i++)
- if (h5_fixname(FILENAME[i],plist,filenames[i],sizeof(filenames[i]))
- == NULL){
- printf("h5_fixname failed\n");
- nerrors++;
- return(1);
- }
- H5Pclose(plist);
- if (VERBOSE_MED){
- printf("Test filenames are:\n");
- for (i=0; i < n; i++)
- printf(" %s\n", filenames[i]);
- }
+ int i, n;
+ hid_t plist;
+
+ plist = H5Pcreate (H5P_FILE_ACCESS);
+ H5Pset_fapl_mpio(plist, MPI_COMM_WORLD, MPI_INFO_NULL);
+ n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */
+
+ for (i=0; i < n; i++)
+ if (h5_fixname(FILENAME[i],plist,filenames[i],sizeof(filenames[i]))
+ == NULL){
+ printf("h5_fixname failed\n");
+ nerrors++;
+ return(1);
+ }
+ H5Pclose(plist);
+ if (VERBOSE_MED){
+ printf("Test filenames are:\n");
+ for (i=0; i < n; i++)
+ printf(" %s\n", filenames[i]);
+ }
}
return(0);
@@ -1087,7 +1087,7 @@ errors_sum(int nerrs)
int
main(int argc, char **argv)
{
- int mpi_size, mpi_rank; /* mpi variables */
+ int mpi_size, mpi_rank; /* mpi variables */
int ret_code;
MPI_Init(&argc, &argv);
@@ -1100,23 +1100,23 @@ main(int argc, char **argv)
* calls. By then, MPI calls may not work.
*/
if (H5dont_atexit() < 0){
- printf("Failed to turn off atexit processing. Continue.\n", mpi_rank);
+ printf("Failed to turn off atexit processing. Continue.\n", mpi_rank);
};
H5open();
if (parse_options(argc, argv) != 0){
- if (MAINPROCESS)
- usage();
- goto finish;
+ if (MAINPROCESS)
+ usage();
+ goto finish;
}
if (MAINPROCESS){
- printf("===================================\n");
- printf("MPI functionality tests\n");
- printf("===================================\n");
+ printf("===================================\n");
+ printf("MPI functionality tests\n");
+ printf("===================================\n");
}
if (VERBOSE_MED)
- h5_show_hostname();
+ h5_show_hostname();
fapl = H5Pcreate (H5P_FILE_ACCESS);
H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL);
@@ -1132,28 +1132,28 @@ main(int argc, char **argv)
ret_code = test_mpio_1wMr(filenames[0], USENONE);
ret_code = errors_sum(ret_code);
if (mpi_rank==0 && ret_code > 0){
- printf("***FAILED with %d total errors\n", ret_code);
- nerrors += ret_code;
+ printf("***FAILED with %d total errors\n", ret_code);
+ nerrors += ret_code;
}
/* test atomicity and file sync in high verbose mode only */
/* since they often hang when broken and PHDF5 does not use them. */
if (VERBOSE_HI){
- MPI_BANNER("MPIO 1 write Many read test with atomicity...");
- ret_code = test_mpio_1wMr(filenames[0], USEATOM);
- ret_code = errors_sum(ret_code);
- if (mpi_rank==0 && ret_code > 0){
- printf("***FAILED with %d total errors\n", ret_code);
- nerrors += ret_code;
- }
-
- MPI_BANNER("MPIO 1 write Many read test with file sync...");
- ret_code = test_mpio_1wMr(filenames[0], USEFSYNC);
- ret_code = errors_sum(ret_code);
- if (mpi_rank==0 && ret_code > 0){
- printf("***FAILED with %d total errors\n", ret_code);
- nerrors += ret_code;
- }
+ MPI_BANNER("MPIO 1 write Many read test with atomicity...");
+ ret_code = test_mpio_1wMr(filenames[0], USEATOM);
+ ret_code = errors_sum(ret_code);
+ if (mpi_rank==0 && ret_code > 0){
+ printf("***FAILED with %d total errors\n", ret_code);
+ nerrors += ret_code;
+ }
+
+ MPI_BANNER("MPIO 1 write Many read test with file sync...");
+ ret_code = test_mpio_1wMr(filenames[0], USEFSYNC);
+ ret_code = errors_sum(ret_code);
+ if (mpi_rank==0 && ret_code > 0){
+ printf("***FAILED with %d total errors\n", ret_code);
+ nerrors += ret_code;
+ }
}
@@ -1173,7 +1173,6 @@ main(int argc, char **argv)
printf(" will be skipped on Windows (JIRA HDDFV-8064)\n");
#endif
-
/*=======================================
* MPIO independent overlapping writes
*=======================================*/
@@ -1181,8 +1180,8 @@ main(int argc, char **argv)
ret_code = test_mpio_overlap_writes(filenames[0]);
ret_code = errors_sum(ret_code);
if (mpi_rank==0 && ret_code > 0){
- printf("***FAILED with %d total errors\n", ret_code);
- nerrors += ret_code;
+ printf("***FAILED with %d total errors\n", ret_code);
+ nerrors += ret_code;
}
/*=======================================
@@ -1192,8 +1191,8 @@ main(int argc, char **argv)
ret_code = test_mpio_derived_dtype(filenames[0]);
ret_code = errors_sum(ret_code);
if (mpi_rank==0 && ret_code > 0){
- printf("***FAILED with %d total errors\n", ret_code);
- nerrors += ret_code;
+ printf("***FAILED with %d total errors\n", ret_code);
+ nerrors += ret_code;
}
/*=======================================
@@ -1213,8 +1212,8 @@ main(int argc, char **argv)
sc_finish:
ret_code = errors_sum(ret_code);
if (mpi_rank==0 && ret_code > 0){
- printf("***FAILED with %d total errors\n", ret_code);
- nerrors += ret_code;
+ printf("***FAILED with %d total errors\n", ret_code);
+ nerrors += ret_code;
}
@@ -1223,15 +1222,15 @@ finish:
* and exit.
*/
MPI_Barrier(MPI_COMM_WORLD);
- if (MAINPROCESS){ /* only process 0 reports */
- printf("===================================\n");
- if (nerrors){
- printf("***MPI tests detected %d errors***\n", nerrors);
- }
- else{
- printf("MPI tests finished with no errors\n");
- }
- printf("===================================\n");
+ if (MAINPROCESS){ /* only process 0 reports */
+ printf("===================================\n");
+ if (nerrors){
+ printf("***MPI tests detected %d errors***\n", nerrors);
+ }
+ else{
+ printf("MPI tests finished with no errors\n");
+ }
+ printf("===================================\n");
}
/* turn off alarm */
diff --git a/testpar/testphdf5.c b/testpar/testphdf5.c
index 713d6e1..865d381 100644
--- a/testpar/testphdf5.c
+++ b/testpar/testphdf5.c
@@ -28,15 +28,15 @@ int dim0;
int dim1;
int chunkdim0;
int chunkdim1;
-int nerrors = 0; /* errors count */
-int ndatasets = 300; /* number of datasets to create*/
+int nerrors = 0; /* errors count */
+int ndatasets = 300; /* number of datasets to create*/
int ngroups = 512; /* number of groups to create in root
* group. */
-int facc_type = FACC_MPIO; /*Test file access type */
+int facc_type = FACC_MPIO; /*Test file access type */
int dxfer_coll_type = DXFER_COLLECTIVE_IO;
-H5E_auto2_t old_func; /* previous error handler */
-void *old_client_data; /* previous error handler arg.*/
+H5E_auto2_t old_func; /* previous error handler */
+void *old_client_data; /* previous error handler arg.*/
/* other option flags */
@@ -48,10 +48,10 @@ void *old_client_data; /* previous error handler arg.*/
#define NFILENAME 2
#define PARATESTFILE filenames[0]
const char *FILENAME[NFILENAME]={
- "ParaTest",
- NULL};
-char filenames[NFILENAME][PATH_MAX];
-hid_t fapl; /* file access property list */
+ "ParaTest",
+ NULL};
+char filenames[NFILENAME][PATH_MAX];
+hid_t fapl; /* file access property list */
#ifdef USE_PAUSE
/* pause the process for a moment to allow debugger to attach if desired. */
@@ -64,7 +64,7 @@ void pause_proc(void)
{
int pid;
- h5_stat_t statbuf;
+ h5_stat_t statbuf;
char greenlight[] = "go";
int maxloop = 10;
int loops = 0;
@@ -82,14 +82,14 @@ void pause_proc(void)
if (MAINPROCESS)
while ((HDstat(greenlight, &statbuf) == -1) && loops < maxloop){
- if (!loops++){
- printf("Proc %d (%*s, %d): to debug, attach %d\n",
- mpi_rank, mpi_namelen, mpi_name, pid, pid);
- }
- printf("waiting(%ds) for file %s ...\n", time_int, greenlight);
- fflush(stdout);
- sleep(time_int);
- }
+ if (!loops++){
+ printf("Proc %d (%*s, %d): to debug, attach %d\n",
+ mpi_rank, mpi_namelen, mpi_name, pid, pid);
+ }
+ printf("waiting(%ds) for file %s ...\n", time_int, greenlight);
+ fflush(stdout);
+ sleep(time_int);
+ }
MPI_Barrier(MPI_COMM_WORLD);
}
@@ -101,7 +101,7 @@ int MPI_Init(int *argc, char ***argv)
pause_proc();
return (ret_code);
}
-#endif /* USE_PAUSE */
+#endif /* USE_PAUSE */
/*
@@ -111,15 +111,15 @@ static void
usage(void)
{
printf(" [-r] [-w] [-m<n_datasets>] [-n<n_groups>] "
- "[-o] [-f <prefix>] [-d <dim0> <dim1>]\n");
+ "[-o] [-f <prefix>] [-d <dim0> <dim1>]\n");
printf("\t-m<n_datasets>"
- "\tset number of datasets for the multiple dataset test\n");
+ "\tset number of datasets for the multiple dataset test\n");
printf("\t-n<n_groups>"
"\tset number of groups for the multiple group test\n");
printf("\t-f <prefix>\tfilename prefix\n");
printf("\t-2\t\tuse Split-file together with MPIO\n");
printf("\t-d <factor0> <factor1>\tdataset dimensions factors. Defaults (%d,%d)\n",
- ROW_FACTOR, COL_FACTOR);
+ ROW_FACTOR, COL_FACTOR);
printf("\t-c <dim0> <dim1>\tdataset chunk dimensions. Defaults (dim0/10,dim1/10)\n");
printf("\n");
}
@@ -131,7 +131,7 @@ usage(void)
static int
parse_options(int argc, char **argv)
{
- int mpi_size, mpi_rank; /* mpi variables */
+ int mpi_size, mpi_rank; /* mpi variables */
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
@@ -142,107 +142,107 @@ parse_options(int argc, char **argv)
chunkdim1 = (dim1+9)/10;
while (--argc){
- if (**(++argv) != '-'){
- break;
- }else{
- switch(*(*argv+1)){
- case 'm': ndatasets = atoi((*argv+1)+1);
- if (ndatasets < 0){
- nerrors++;
- return(1);
- }
- break;
- case 'n': ngroups = atoi((*argv+1)+1);
- if (ngroups < 0){
+ if (**(++argv) != '-'){
+ break;
+ }else{
+ switch(*(*argv+1)){
+ case 'm': ndatasets = atoi((*argv+1)+1);
+ if (ndatasets < 0){
+ nerrors++;
+ return(1);
+ }
+ break;
+ case 'n': ngroups = atoi((*argv+1)+1);
+ if (ngroups < 0){
nerrors++;
return(1);
- }
+ }
break;
- case 'f': if (--argc < 1) {
- nerrors++;
- return(1);
- }
- if (**(++argv) == '-') {
- nerrors++;
- return(1);
- }
- paraprefix = *argv;
- break;
- case 'i': /* Collective MPI-IO access with independent IO */
- dxfer_coll_type = DXFER_INDEPENDENT_IO;
- break;
- case '2': /* Use the split-file driver with MPIO access */
- /* Can use $HDF5_METAPREFIX to define the */
- /* meta-file-prefix. */
- facc_type = FACC_MPIO | FACC_SPLIT;
- break;
- case 'd': /* dimensizes */
- if (--argc < 2){
- nerrors++;
- return(1);
- }
- dim0 = atoi(*(++argv))*mpi_size;
- argc--;
- dim1 = atoi(*(++argv))*mpi_size;
- /* set default chunkdim sizes too */
- chunkdim0 = (dim0+9)/10;
- chunkdim1 = (dim1+9)/10;
- break;
- case 'c': /* chunk dimensions */
- if (--argc < 2){
- nerrors++;
- return(1);
- }
- chunkdim0 = atoi(*(++argv));
- argc--;
- chunkdim1 = atoi(*(++argv));
- break;
- case 'h': /* print help message--return with nerrors set */
- return(1);
- default: printf("Illegal option(%s)\n", *argv);
- nerrors++;
- return(1);
- }
- }
+ case 'f': if (--argc < 1) {
+ nerrors++;
+ return(1);
+ }
+ if (**(++argv) == '-') {
+ nerrors++;
+ return(1);
+ }
+ paraprefix = *argv;
+ break;
+ case 'i': /* Collective MPI-IO access with independent IO */
+ dxfer_coll_type = DXFER_INDEPENDENT_IO;
+ break;
+ case '2': /* Use the split-file driver with MPIO access */
+ /* Can use $HDF5_METAPREFIX to define the */
+ /* meta-file-prefix. */
+ facc_type = FACC_MPIO | FACC_SPLIT;
+ break;
+ case 'd': /* dimensizes */
+ if (--argc < 2){
+ nerrors++;
+ return(1);
+ }
+ dim0 = atoi(*(++argv))*mpi_size;
+ argc--;
+ dim1 = atoi(*(++argv))*mpi_size;
+ /* set default chunkdim sizes too */
+ chunkdim0 = (dim0+9)/10;
+ chunkdim1 = (dim1+9)/10;
+ break;
+ case 'c': /* chunk dimensions */
+ if (--argc < 2){
+ nerrors++;
+ return(1);
+ }
+ chunkdim0 = atoi(*(++argv));
+ argc--;
+ chunkdim1 = atoi(*(++argv));
+ break;
+ case 'h': /* print help message--return with nerrors set */
+ return(1);
+ default: printf("Illegal option(%s)\n", *argv);
+ nerrors++;
+ return(1);
+ }
+ }
} /*while*/
/* check validity of dimension and chunk sizes */
if (dim0 <= 0 || dim1 <= 0){
- printf("Illegal dim sizes (%d, %d)\n", dim0, dim1);
- nerrors++;
- return(1);
+ printf("Illegal dim sizes (%d, %d)\n", dim0, dim1);
+ nerrors++;
+ return(1);
}
if (chunkdim0 <= 0 || chunkdim1 <= 0){
- printf("Illegal chunkdim sizes (%d, %d)\n", chunkdim0, chunkdim1);
- nerrors++;
- return(1);
+ printf("Illegal chunkdim sizes (%d, %d)\n", chunkdim0, chunkdim1);
+ nerrors++;
+ return(1);
}
/* Make sure datasets can be divided into equal portions by the processes */
if ((dim0 % mpi_size) || (dim1 % mpi_size)){
- if (MAINPROCESS)
- printf("dim0(%d) and dim1(%d) must be multiples of processes(%d)\n",
- dim0, dim1, mpi_size);
- nerrors++;
- return(1);
+ if (MAINPROCESS)
+ printf("dim0(%d) and dim1(%d) must be multiples of processes(%d)\n",
+ dim0, dim1, mpi_size);
+ nerrors++;
+ return(1);
}
/* compose the test filenames */
{
- int i, n;
-
- n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */
-
- for (i=0; i < n; i++)
- if (h5_fixname(FILENAME[i],fapl,filenames[i],sizeof(filenames[i]))
- == NULL){
- printf("h5_fixname failed\n");
- nerrors++;
- return(1);
- }
- printf("Test filenames are:\n");
- for (i=0; i < n; i++)
- printf(" %s\n", filenames[i]);
+ int i, n;
+
+ n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */
+
+ for (i=0; i < n; i++)
+ if (h5_fixname(FILENAME[i],fapl,filenames[i],sizeof(filenames[i]))
+ == NULL){
+ printf("h5_fixname failed\n");
+ nerrors++;
+ return(1);
+ }
+ printf("Test filenames are:\n");
+ for (i=0; i < n; i++)
+ printf(" %s\n", filenames[i]);
}
return(0);
@@ -257,7 +257,7 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
{
hid_t ret_pl = -1;
herr_t ret; /* generic return value */
- int mpi_rank; /* mpi variables */
+ int mpi_rank; /* mpi variables */
/* need the rank for error checking macros */
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
@@ -266,32 +266,32 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
VRFY((ret_pl >= 0), "H5P_FILE_ACCESS");
if (l_facc_type == FACC_DEFAULT)
- return (ret_pl);
+ return (ret_pl);
if (l_facc_type == FACC_MPIO){
- /* set Parallel access with communicator */
- ret = H5Pset_fapl_mpio(ret_pl, comm, info);
- VRFY((ret >= 0), "");
- return(ret_pl);
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(ret_pl, comm, info);
+ VRFY((ret >= 0), "");
+ return(ret_pl);
}
if (l_facc_type == (FACC_MPIO | FACC_SPLIT)){
- hid_t mpio_pl;
-
- mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
- VRFY((mpio_pl >= 0), "");
- /* set Parallel access with communicator */
- ret = H5Pset_fapl_mpio(mpio_pl, comm, info);
- VRFY((ret >= 0), "");
-
- /* setup file access template */
- ret_pl = H5Pcreate (H5P_FILE_ACCESS);
- VRFY((ret_pl >= 0), "");
- /* set Parallel access with communicator */
- ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl);
- VRFY((ret >= 0), "H5Pset_fapl_split succeeded");
- H5Pclose(mpio_pl);
- return(ret_pl);
+ hid_t mpio_pl;
+
+ mpio_pl = H5Pcreate (H5P_FILE_ACCESS);
+ VRFY((mpio_pl >= 0), "");
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(mpio_pl, comm, info);
+ VRFY((ret >= 0), "");
+
+ /* setup file access template */
+ ret_pl = H5Pcreate (H5P_FILE_ACCESS);
+ VRFY((ret_pl >= 0), "");
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_split(ret_pl, ".meta", mpio_pl, ".raw", mpio_pl);
+ VRFY((ret >= 0), "H5Pset_fapl_split succeeded");
+ H5Pclose(mpio_pl);
+ return(ret_pl);
}
/* unknown file access types */
@@ -301,7 +301,7 @@ create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type)
int main(int argc, char **argv)
{
- int mpi_size, mpi_rank; /* mpi variables */
+ int mpi_size, mpi_rank; /* mpi variables */
H5Ptest_param_t ndsets_params, ngroups_params;
H5Ptest_param_t collngroups_params;
H5Ptest_param_t io_mode_confusion_params;
@@ -319,9 +319,9 @@ int main(int argc, char **argv)
dim1 = COL_FACTOR*mpi_size;
if (MAINPROCESS){
- printf("===================================\n");
- printf("PHDF5 TESTS START\n");
- printf("===================================\n");
+ printf("===================================\n");
+ printf("PHDF5 TESTS START\n");
+ printf("===================================\n");
}
/* Attempt to turn off atexit post processing so that in case errors
@@ -340,41 +340,41 @@ int main(int argc, char **argv)
/* Tests are generally arranged from least to most complexity... */
AddTest("mpiodup", test_fapl_mpio_dup, NULL,
- "fapl_mpio duplicate", NULL);
+ "fapl_mpio duplicate", NULL);
AddTest("split", test_split_comm_access, NULL,
- "dataset using split communicators", PARATESTFILE);
+ "dataset using split communicators", PARATESTFILE);
AddTest("idsetw", dataset_writeInd, NULL,
- "dataset independent write", PARATESTFILE);
+ "dataset independent write", PARATESTFILE);
AddTest("idsetr", dataset_readInd, NULL,
- "dataset independent read", PARATESTFILE);
+ "dataset independent read", PARATESTFILE);
AddTest("cdsetw", dataset_writeAll, NULL,
- "dataset collective write", PARATESTFILE);
+ "dataset collective write", PARATESTFILE);
AddTest("cdsetr", dataset_readAll, NULL,
- "dataset collective read", PARATESTFILE);
+ "dataset collective read", PARATESTFILE);
AddTest("eidsetw", extend_writeInd, NULL,
- "extendible dataset independent write", PARATESTFILE);
+ "extendible dataset independent write", PARATESTFILE);
AddTest("eidsetr", extend_readInd, NULL,
- "extendible dataset independent read", PARATESTFILE);
+ "extendible dataset independent read", PARATESTFILE);
AddTest("ecdsetw", extend_writeAll, NULL,
- "extendible dataset collective write", PARATESTFILE);
+ "extendible dataset collective write", PARATESTFILE);
AddTest("ecdsetr", extend_readAll, NULL,
- "extendible dataset collective read", PARATESTFILE);
+ "extendible dataset collective read", PARATESTFILE);
AddTest("eidsetw2", extend_writeInd2, NULL,
- "extendible dataset independent write #2", PARATESTFILE);
+ "extendible dataset independent write #2", PARATESTFILE);
AddTest("selnone", none_selection_chunk, NULL,
"chunked dataset with none-selection", PARATESTFILE);
AddTest("calloc", test_chunk_alloc, NULL,
- "parallel extend Chunked allocation on serial file", PARATESTFILE);
+ "parallel extend Chunked allocation on serial file", PARATESTFILE);
AddTest("fltread", test_filter_read, NULL,
- "parallel read of dataset written serially with filters", PARATESTFILE);
+ "parallel read of dataset written serially with filters", PARATESTFILE);
#ifdef H5_HAVE_FILTER_DEFLATE
AddTest("cmpdsetr", compress_readAll, NULL,
- "compressed dataset collective read", PARATESTFILE);
+ "compressed dataset collective read", PARATESTFILE);
#endif /* H5_HAVE_FILTER_DEFLATE */
AddTest("zerodsetr", zero_dim_dset, NULL,
@@ -383,22 +383,22 @@ int main(int argc, char **argv)
ndsets_params.name = PARATESTFILE;
ndsets_params.count = ndatasets;
AddTest("ndsetw", multiple_dset_write, NULL,
- "multiple datasets write", &ndsets_params);
+ "multiple datasets write", &ndsets_params);
ngroups_params.name = PARATESTFILE;
ngroups_params.count = ngroups;
AddTest("ngrpw", multiple_group_write, NULL,
- "multiple groups write", &ngroups_params);
+ "multiple groups write", &ngroups_params);
AddTest("ngrpr", multiple_group_read, NULL,
- "multiple groups read", &ngroups_params);
+ "multiple groups read", &ngroups_params);
AddTest("compact", compact_dataset, NULL,
- "compact dataset test", PARATESTFILE);
+ "compact dataset test", PARATESTFILE);
collngroups_params.name = PARATESTFILE;
collngroups_params.count = ngroups;
AddTest("cngrpw", collective_group_write, NULL,
- "collective group and dataset write", &collngroups_params);
+ "collective group and dataset write", &collngroups_params);
AddTest("ingrpr", independent_group_read, NULL,
"independent group and dataset read", &collngroups_params);
#ifndef H5_HAVE_WIN32_API
@@ -408,71 +408,71 @@ int main(int argc, char **argv)
printf("big dataset test will be skipped on Windows (JIRA HDDFV-8064)\n");
#endif
AddTest("fill", dataset_fillvalue, NULL,
- "dataset fill value", PARATESTFILE);
+ "dataset fill value", PARATESTFILE);
AddTest("cchunk1",
- coll_chunk1,NULL, "simple collective chunk io",PARATESTFILE);
+ coll_chunk1,NULL, "simple collective chunk io",PARATESTFILE);
AddTest("cchunk2",
- coll_chunk2,NULL, "noncontiguous collective chunk io",PARATESTFILE);
+ coll_chunk2,NULL, "noncontiguous collective chunk io",PARATESTFILE);
AddTest("cchunk3",
- coll_chunk3,NULL, "multi-chunk collective chunk io",PARATESTFILE);
+ coll_chunk3,NULL, "multi-chunk collective chunk io",PARATESTFILE);
AddTest("cchunk4",
coll_chunk4,NULL, "collective chunk io with partial non-selection ",PARATESTFILE);
if((mpi_size < 3)&& MAINPROCESS ) {
- printf("Collective chunk IO optimization APIs ");
- printf("needs at least 3 processes to participate\n");
- printf("Collective chunk IO API tests will be skipped \n");
+ printf("Collective chunk IO optimization APIs ");
+ printf("needs at least 3 processes to participate\n");
+ printf("Collective chunk IO API tests will be skipped \n");
}
AddTest((mpi_size <3)? "-cchunk5":"cchunk5" ,
coll_chunk5,NULL,
- "linked chunk collective IO without optimization",PARATESTFILE);
+ "linked chunk collective IO without optimization",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk6" : "cchunk6",
- coll_chunk6,NULL,
- "multi-chunk collective IO with direct request",PARATESTFILE);
+ coll_chunk6,NULL,
+ "multi-chunk collective IO with direct request",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk7" : "cchunk7",
- coll_chunk7,NULL,
- "linked chunk collective IO with optimization",PARATESTFILE);
+ coll_chunk7,NULL,
+ "linked chunk collective IO with optimization",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk8" : "cchunk8",
- coll_chunk8,NULL,
- "linked chunk collective IO transferring to multi-chunk",PARATESTFILE);
+ coll_chunk8,NULL,
+ "linked chunk collective IO transferring to multi-chunk",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk9" : "cchunk9",
- coll_chunk9,NULL,
- "multiple chunk collective IO with optimization",PARATESTFILE);
+ coll_chunk9,NULL,
+ "multiple chunk collective IO with optimization",PARATESTFILE);
AddTest((mpi_size < 3)? "-cchunk10" : "cchunk10",
- coll_chunk10,NULL,
- "multiple chunk collective IO transferring to independent IO",PARATESTFILE);
+ coll_chunk10,NULL,
+ "multiple chunk collective IO transferring to independent IO",PARATESTFILE);
/* irregular collective IO tests*/
AddTest("ccontw",
- coll_irregular_cont_write,NULL,
- "collective irregular contiguous write",PARATESTFILE);
+ coll_irregular_cont_write,NULL,
+ "collective irregular contiguous write",PARATESTFILE);
AddTest("ccontr",
- coll_irregular_cont_read,NULL,
- "collective irregular contiguous read",PARATESTFILE);
+ coll_irregular_cont_read,NULL,
+ "collective irregular contiguous read",PARATESTFILE);
AddTest("cschunkw",
- coll_irregular_simple_chunk_write,NULL,
- "collective irregular simple chunk write",PARATESTFILE);
+ coll_irregular_simple_chunk_write,NULL,
+ "collective irregular simple chunk write",PARATESTFILE);
AddTest("cschunkr",
- coll_irregular_simple_chunk_read,NULL,
- "collective irregular simple chunk read",PARATESTFILE);
+ coll_irregular_simple_chunk_read,NULL,
+ "collective irregular simple chunk read",PARATESTFILE);
AddTest("ccchunkw",
- coll_irregular_complex_chunk_write,NULL,
- "collective irregular complex chunk write",PARATESTFILE);
+ coll_irregular_complex_chunk_write,NULL,
+ "collective irregular complex chunk write",PARATESTFILE);
AddTest("ccchunkr",
- coll_irregular_complex_chunk_read,NULL,
- "collective irregular complex chunk read",PARATESTFILE);
+ coll_irregular_complex_chunk_read,NULL,
+ "collective irregular complex chunk read",PARATESTFILE);
AddTest("null", null_dataset, NULL,
- "null dataset test", PARATESTFILE);
+ "null dataset test", PARATESTFILE);
io_mode_confusion_params.name = PARATESTFILE;
io_mode_confusion_params.count = 0; /* value not used */
AddTest("I/Omodeconf", io_mode_confusion, NULL,
- "I/O mode confusion test -- hangs quickly on failure",
+ "I/O mode confusion test -- hangs quickly on failure",
&io_mode_confusion_params);
if((mpi_size < 3) && MAINPROCESS) {
@@ -539,9 +539,9 @@ int main(int argc, char **argv)
TestParseCmdLine(argc, argv);
if (dxfer_coll_type == DXFER_INDEPENDENT_IO && MAINPROCESS){
- printf("===================================\n"
- " Using Independent I/O with file set view to replace collective I/O \n"
- "===================================\n");
+ printf("===================================\n"
+ " Using Independent I/O with file set view to replace collective I/O \n"
+ "===================================\n");
}
@@ -566,16 +566,16 @@ int main(int argc, char **argv)
{
int temp;
MPI_Allreduce(&nerrors, &temp, 1, MPI_INT, MPI_MAX, MPI_COMM_WORLD);
- nerrors=temp;
+ nerrors=temp;
}
- if (MAINPROCESS){ /* only process 0 reports */
- printf("===================================\n");
- if (nerrors)
- printf("***PHDF5 tests detected %d errors***\n", nerrors);
- else
- printf("PHDF5 tests finished with no errors\n");
- printf("===================================\n");
+ if (MAINPROCESS){ /* only process 0 reports */
+ printf("===================================\n");
+ if (nerrors)
+ printf("***PHDF5 tests detected %d errors***\n", nerrors);
+ else
+ printf("PHDF5 tests finished with no errors\n");
+ printf("===================================\n");
}
/* close HDF5 library */
H5close();