[svn-r20559] Description:

	Bring r20407:20557 from trunk to revise_chunks branch

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, w/threadsafe, in production mode
        Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode

3 files changed, 124 insertions, 91 deletions

diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt
index 8a6ca11..b15f5c1 100644
--- a/tools/h5copy/CMakeLists.txt
+++ b/tools/h5copy/CMakeLists.txt
@@ -70,6 +70,13 @@ IF (BUILD_TESTING)
     )
   ENDFOREACH (h5_file ${HDF5_REFERENCE_TEST_FILES})
   
+  ADD_CUSTOM_COMMAND (
+      TARGET     h5copy
+      POST_BUILD
+      COMMAND    ${CMAKE_COMMAND}
+      ARGS       -E copy_if_different ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copytst.h5 ${PROJECT_BINARY_DIR}/h5copytst.h5
+  )
+  
 ##############################################################################
 ##############################################################################
 ###           T H E   T E S T S  M A C R O S                               ###
@@ -79,44 +86,44 @@ IF (BUILD_TESTING)
   #
   # Perform h5copy according to passing parmeters
   #
-  MACRO (ADD_H5COPY_TEST testname resultcode infile outfile vparam srcname dstname)
+  MACRO (ADD_H5_F_TEST testname resultcode infile outfile fparam vparam sparam srcname dparam dstname)
+    ADD_TEST (
+        NAME H5COPY_F-${testname}
+        COMMAND $<TARGET_FILE:h5copy> -f ${fparam} -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
+    )
+    IF (NOT "${last_test}" STREQUAL "")
+      SET_TESTS_PROPERTIES (H5COPY_F-${testname} PROPERTIES DEPENDS ${last_test})
+    ENDIF (NOT "${last_test}" STREQUAL "")
+    SET (last_test "H5COPY_F-${testname}")
+    ADD_H5_DIFF_TEST (${testname} ${resultcode} ${last_test} ${infile} ${outfile} ${srcname} ${dstname})
+  ENDMACRO (ADD_H5_F_TEST)
   
-    IF (NOT "${ARGN}" STREQUAL "")
-      ADD_TEST (
-          NAME H5COPY-${testname}
-          COMMAND $<TARGET_FILE:h5copy> -f ${ARGN} -i ./testfiles/${infile} -o ./testfiles/${outfile} -${vparam} -s ${srcname} -d ${dstname}
-      )
-    ELSE (NOT "${ARGN}" STREQUAL "")
-      ADD_TEST (
-          NAME H5COPY-${testname}
-          COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${outfile} -${vparam} -s ${srcname} -d ${dstname}
-      )
-    ENDIF (NOT "${ARGN}" STREQUAL "")
+  MACRO (ADD_H5_TEST testname resultcode infile outfile vparam sparam srcname dparam dstname)
+    ADD_TEST (
+        NAME H5COPY-${testname}
+        COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
+    )
     IF (NOT "${last_test}" STREQUAL "")
       SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS ${last_test})
     ENDIF (NOT "${last_test}" STREQUAL "")
     SET (last_test "H5COPY-${testname}")
+    ADD_H5_DIFF_TEST (${testname} ${resultcode} ${last_test} ${infile} ${outfile} ${srcname} ${dstname})
+  ENDMACRO (ADD_H5_TEST)
+  
+  MACRO (ADD_H5_DIFF_TEST testname resultcode testdepends infile outfile srcname dstname)
     # resultcode=2 will cause the test to skip the diff test
     IF (NOT ${resultcode} STREQUAL "2")
       ADD_TEST (
           NAME H5COPY-DIFF_${testname}
           COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${outfile} ${srcname} ${dstname}
       )
-      SET_TESTS_PROPERTIES(H5COPY-DIFF_${testname} PROPERTIES DEPENDS H5COPY-${testname})
+      SET_TESTS_PROPERTIES(H5COPY-DIFF_${testname} PROPERTIES DEPENDS ${testdepends})
       SET (last_test "H5COPY-DIFF_${testname}")
       IF (${resultcode} STREQUAL "1")
         SET_TESTS_PROPERTIES (H5COPY-DIFF_${testname} PROPERTIES WILL_FAIL "true")
       ENDIF (${resultcode} STREQUAL "1")
     ENDIF (NOT ${resultcode} STREQUAL "2")
-  ENDMACRO (ADD_H5COPY_TEST)
-
-  #
-  # call ADD_H5COPY_TEST macro with assumption that source and target file
-  # is different
-  #
-  MACRO (ADD_H5_TEST testname resultcode testfile vparam srcname dstname)
-    ADD_H5COPY_TEST (${testname} ${resultcode} ${testfile}.h5 ${testfile}.out.h5 ${vparam} ${srcname} ${dstname} ${ARGN})
-  ENDMACRO (ADD_H5_TEST testname resultcode testfile vparam srcname dstname)
+  ENDMACRO (ADD_H5_DIFF_TEST)
 
   #
   # Test result with h5ls
@@ -143,16 +150,16 @@ IF (BUILD_TESTING)
       SET_TESTS_PROPERTIES (H5COPY-H5LS_${file}-${filetest} PROPERTIES DEPENDS ${last_test})
     ENDIF (NOT "${last_test}" STREQUAL "")
     SET (last_test "H5COPY-H5LS_${file}-${filetest}")
-  ENDMACRO (ADD_H5LS_TEST file filetest)
+  ENDMACRO (ADD_H5LS_TEST)
 
   #
   # Similiar to ADD_H5_TEST macro. Compare to outputs from source & target
   # files instead of checking with h5ls.
   #
-  MACRO (ADD_H5_CMP_TEST testname resultcode testfile vparam srcname dstname)
+  MACRO (ADD_H5_CMP_TEST testname resultcode infile outfile vparam sparam srcname dparam dstname)
     # If using memchecker add tests without using scripts
     IF (HDF5_ENABLE_USING_MEMCHECKER)
-      ADD_TEST (NAME H5COPY-CMP-${testname} COMMAND $<TARGET_FILE:h5copy> -i ${testfile}.h5 -o ./testfiles/${testfile}.out.h5 -${vparam} -s ${srcname} -d ${dstname})
+      ADD_TEST (NAME H5COPY-CMP-${testname} COMMAND $<TARGET_FILE:h5copy> -i ${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN})
       IF (${resultcode} STREQUAL "1")
         SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES WILL_FAIL "true")
       ENDIF (${resultcode} STREQUAL "1")
@@ -161,7 +168,7 @@ IF (BUILD_TESTING)
           NAME H5COPY-CMP-${testname}
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5copy>"
-              -D "TEST_ARGS=-i;${testfile}.h5;-o;./testfiles/${testfile}.out.h5;-${vparam};-s;${srcname};-d;${dstname}"
+              -D "TEST_ARGS=-i;${infile};-o;./testfiles/${outfile};${vparam};${sparam};${srcname};${dparam};${dstname}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
               -D "TEST_OUTPUT=./testfiles/${testname}.out.out"
               -D "TEST_EXPECT=${resultcode}"
@@ -174,7 +181,7 @@ IF (BUILD_TESTING)
       SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES DEPENDS ${last_test})
     ENDIF (NOT "${last_test}" STREQUAL "")
     SET (last_test "H5COPY-CMP-${testname}")
-  ENDMACRO (ADD_H5_CMP_TEST testname resultcode testfile vparam srcname dstname)
+  ENDMACRO (ADD_H5_CMP_TEST)
 
 ##############################################################################
 ##############################################################################
@@ -189,7 +196,6 @@ IF (BUILD_TESTING)
   SET (HDF_FILE2 h5copy_ref)
   SET (HDF_EXT_SRC_FILE h5copy_extlinks_src)
   SET (HDF_EXT_TRG_FILE h5copy_extlinks_trg)
-  SET (HDF_FILE1_TMP h5copytst_tmp)
 
   # Remove any output file left over from previous test run
   ADD_TEST (
@@ -212,40 +218,40 @@ IF (BUILD_TESTING)
   SET (last_test "H5COPY-clearall-objects")
   
   # "Test copying various forms of datasets"
-  ADD_H5_TEST (simple 0 ${HDF_FILE1} v simple simple)
-  ADD_H5_TEST (chunk 0 ${HDF_FILE1} v chunk chunk)
-  ADD_H5_TEST (compact 0 ${HDF_FILE1} v compact compact)
-  ADD_H5_TEST (compound 0 ${HDF_FILE1} v compound compound)
-  ADD_H5_TEST (compressed 0 ${HDF_FILE1} v compressed compressed)
-  ADD_H5_TEST (named_vl 0 ${HDF_FILE1} v named_vl named_vl)
-  ADD_H5_TEST (nested_vl 0 ${HDF_FILE1} v nested_vl nested_vl)
+  ADD_H5_TEST (simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s simple -d simple)
+  ADD_H5_TEST (chunk 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s chunk -d chunk)
+  ADD_H5_TEST (compact 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compact -d compact)
+  ADD_H5_TEST (compound 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compound -d compound)
+  ADD_H5_TEST (compressed 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compressed -d compressed)
+  ADD_H5_TEST (named_vl 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s named_vl -d named_vl)
+  ADD_H5_TEST (nested_vl 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s nested_vl -d nested_vl)
 
   # "Test copying dataset within group in source file to root of destination"
-  ADD_H5_TEST (simple_top 0 ${HDF_FILE1} v grp_dsets/simple simple_top)
+  ADD_H5_TEST (simple_top 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets/simple -d simple_top)
 
   # "Test copying & renaming dataset"
-  ADD_H5_TEST (rename 0 ${HDF_FILE1} v compound rename)
+  ADD_H5_TEST (rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compound -d rename)
 
   # "Test copying empty, 'full' & 'nested' groups"
-  ADD_H5_TEST (grp_empty 0 ${HDF_FILE1} v grp_empty grp_empty)
-  ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1} v grp_dsets grp_dsets)
-  ADD_H5_TEST (grp_nested 0 ${HDF_FILE1} v grp_nested grp_nested)
+  ADD_H5_TEST (grp_empty 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_empty -d grp_empty)
+  ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d grp_dsets)
+  ADD_H5_TEST (grp_nested 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_nested -d grp_nested)
 
   # "Test copying dataset within group in source file to group in destination"
-  ADD_H5_TEST (simple_group 0 ${HDF_FILE1} v /grp_dsets/simple /grp_dsets/simple_group)
+  ADD_H5_TEST (simple_group 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets/simple -d /grp_dsets/simple_group)
 
   # "Test copying & renaming group"
-  ADD_H5_TEST (grp_rename 0 ${HDF_FILE1} v grp_dsets grp_rename)
+  ADD_H5_TEST (grp_rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d grp_rename)
 
   # "Test copying 'full' group hierarchy into group in destination file"
-  ADD_H5_TEST (grp_dsets_rename 0 ${HDF_FILE1} v grp_dsets /grp_rename/grp_dsets)
+  ADD_H5_TEST (grp_dsets_rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d /grp_rename/grp_dsets)
 
   # "Test copying objects into group hier. that doesn't exist yet in destination file"
-  ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1} vp simple /A/B1/simple)
-  ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1} vp simple /A/B2/simple2)
-  ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1} vp /grp_dsets/simple /C/D/simple)
-  ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1} vp /grp_dsets /E/F/grp_dsets)
-  ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1} vp /grp_nested /G/H/grp_nested)
+  ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s simple -d /A/B1/simple)
+  ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s simple -d /A/B2/simple2)
+  ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_dsets/simple -d /C/D/simple)
+  ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets)
+  ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_nested -d /G/H/grp_nested)
 
   # Verify that the file created above is correct
   ADD_H5LS_TEST (${HDF_FILE1} basic)
@@ -267,7 +273,7 @@ IF (BUILD_TESTING)
   SET (last_test "H5COPY-clear-refs")
 
   # "Test copying object and region references"
-  ADD_H5_TEST (region_ref 2 ${HDF_FILE2} v / /COPY ref)
+  ADD_H5_F_TEST (region_ref 2 ${HDF_FILE2}.h5 ${HDF_FILE2}.out.h5 ref -v -s / -d /COPY)
 
   # Verify that the file created above is correct
   ADD_H5LS_TEST (${HDF_FILE2} refs)
@@ -289,41 +295,33 @@ IF (BUILD_TESTING)
   SET (last_test "H5COPY-clear-ext-links")
 
   # "Test copying external link directly without -f ext"
-  ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_dset /copy1_dset)
+  ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_dset -d /copy1_dset)
 
   # "Test copying external link directly with -f ext"
-  ADD_H5_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_dset /copy2_dset ext)
+  ADD_H5_F_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_dset -d /copy2_dset)
 
   # "Test copying dangling external link (no obj) directly without -f ext"
-  ADD_H5_TEST (ext_dangle_noobj 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_notyet1 /copy_dangle1_1)
+  ADD_H5_TEST (ext_dangle_noobj 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_1)
 
   # "Test copying dangling external link (no obj) directly with -f ext"
-  ADD_H5_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_notyet1 /copy_dangle1_2 ext)
+  ADD_H5_F_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2)
 
   # "Test copying dangling external link (no file) directly without -f ext"
-  ADD_H5_TEST (ext_dangle_nofile 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_notyet2 /copy_dangle2_1)
+  ADD_H5_TEST (ext_dangle_nofile 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_1)
 
   # "Test copying dangling external link (no file) directly with -f ext"
-  ADD_H5_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE} v /group_ext/extlink_notyet2 /copy_dangle2_2 ext)
+  ADD_H5_F_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2)
 
   # "Test copying a group contains external links without -f ext"
-  ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE} v /group_ext /copy1_group)
+  ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext -d /copy1_group)
 
   # "Test copying a group contains external links with -f ext"
-  ADD_H5_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE} v /group_ext /copy2_group ext) 
+  ADD_H5_F_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext -d /copy2_group) 
 
   # Verify that the file created above is correct
   ADD_H5LS_TEST (${HDF_EXT_SRC_FILE} links)
 
 ############# Test misc. ############## 
-
-  ADD_CUSTOM_COMMAND (
-      TARGET     h5copy
-      POST_BUILD
-      COMMAND    ${CMAKE_COMMAND}
-      ARGS       -E copy_if_different ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copytst.h5 ${PROJECT_BINARY_DIR}/h5copytst.h5
-  )
-
   # Remove any output file left over from previous test run
   ADD_TEST (
       NAME H5COPY-clear-misc
@@ -331,8 +329,7 @@ IF (BUILD_TESTING)
           -E remove 
           ./testfiles/h5copy_misc1.out.out
           ./testfiles/h5copy_misc1.out.out.err
-          ./testfiles/${HDF_FILE1_TMP}.h5
-          ./testfiles/h5copy_misc1.out.h5
+          ./testfiles/${HDF_FILE1}.out.h5
   )
   IF (NOT "${last_test}" STREQUAL "")
     SET_TESTS_PROPERTIES (H5COPY-clear-misc PROPERTIES DEPENDS ${last_test})
@@ -342,19 +339,30 @@ IF (BUILD_TESTING)
   #-----------------------------------------------------------------
   # "Test copying object into group which doesn't exist, without -p"
   #
-  ADD_H5_CMP_TEST (h5copy_misc1 1 ${HDF_FILE1} v /simple /g1/g2/simple)
+  ADD_H5_CMP_TEST (h5copy_misc1 1 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /g1/g2/simple)
+  # Remove any output file left over from previous test run
+  ADD_TEST (
+      NAME H5COPY-clear-samefile
+      COMMAND    ${CMAKE_COMMAND}
+          -E remove 
+          ./testfiles/${HDF_FILE1}.out.h5
+  )
+  IF (NOT "${last_test}" STREQUAL "")
+    SET_TESTS_PROPERTIES (H5COPY-clear-samefile PROPERTIES DEPENDS ${last_test})
+  ENDIF (NOT "${last_test}" STREQUAL "")
+  SET (last_test "H5COPY-clear-samefile")
   
   #-------------------------------------------
   # "Test copying objects to the same file "
   #
   # create temporary test file with some objects
-  ADD_H5COPY_TEST (samefile1_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1_TMP}.h5 v /simple /simple)
-  ADD_H5COPY_TEST (samefile2_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1_TMP}.h5 v /grp_dsets /grp_dsets)
+  ADD_H5_TEST (samefile1_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /simple)
+  ADD_H5_TEST (samefile2_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets -d /grp_dsets)
   # actual test cases
   # - dataset
-  ADD_H5COPY_TEST (samefile1 0 ${HDF_FILE1_TMP}.h5 ${HDF_FILE1_TMP}.h5 v /simple /simple_cp)
+  ADD_H5_TEST (samefile1 0 ${HDF_FILE1}.out.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /simple_cp)
   # - group with some datasets
-  ADD_H5COPY_TEST (samefile2 0 ${HDF_FILE1_TMP}.h5 ${HDF_FILE1_TMP}.h5 v /grp_dsets /grp_dsets_cp)
+  ADD_H5_TEST (samefile2 0 ${HDF_FILE1}.out.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets -d /grp_dsets_cp)
 ENDIF (BUILD_TESTING)
 
 ##############################################################################
diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in
index 7ebfff5..5a300aa 100644
--- a/tools/h5copy/Makefile.in
+++ b/tools/h5copy/Makefile.in
@@ -73,9 +73,12 @@ h5copy_SOURCES = h5copy.c
 h5copy_OBJECTS = h5copy.$(OBJEXT)
 h5copy_LDADD = $(LDADD)
 h5copy_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
-h5copy_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
-	--mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5copy_LDFLAGS) \
-	$(LDFLAGS) -o $@
+AM_V_lt = $(am__v_lt_$(V))
+am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY))
+am__v_lt_0 = --silent
+h5copy_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
+	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(h5copy_LDFLAGS) $(LDFLAGS) -o $@
 am_h5copygentest_OBJECTS = h5copygentest.$(OBJEXT)
 h5copygentest_OBJECTS = $(am_h5copygentest_OBJECTS)
 h5copygentest_LDADD = $(LDADD)
@@ -86,13 +89,26 @@ am__depfiles_maybe = depfiles
 am__mv = mv -f
 COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
-LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
-	--mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
-	$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
+	$(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \
+	$(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
+	$(AM_CFLAGS) $(CFLAGS)
+AM_V_CC = $(am__v_CC_$(V))
+am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY))
+am__v_CC_0 = @echo "  CC    " $@;
+AM_V_at = $(am__v_at_$(V))
+am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY))
+am__v_at_0 = @
 CCLD = $(CC)
-LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
-	--mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
-	$(LDFLAGS) -o $@
+LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
+	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+AM_V_CCLD = $(am__v_CCLD_$(V))
+am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY))
+am__v_CCLD_0 = @echo "  CCLD  " $@;
+AM_V_GEN = $(am__v_GEN_$(V))
+am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY))
+am__v_GEN_0 = @echo "  GEN   " $@;
 SOURCES = h5copy.c $(h5copygentest_SOURCES)
 DIST_SOURCES = h5copy.c $(h5copygentest_SOURCES)
 ETAGS = etags
@@ -108,13 +124,16 @@ AMTAR = @AMTAR@
 # but which should not be exported to h5cc for building other programs.
 # AM_CFLAGS is an automake construct which should be used by Makefiles 
 # instead of CFLAGS, as CFLAGS is reserved solely for the user to define.
+# This applies to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS as well.
 AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@
 AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@
 AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
+AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
 AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
-AM_LDFLAGS = @AM_LDFLAGS@
+AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
 AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
+AS = @AS@
 
 # Set the paths for AFS installs of autotools for Linux machines
 # Ideally, these tools should never be needed during the build.
@@ -174,7 +193,10 @@ GREP = @GREP@
 H5_CFLAGS = @H5_CFLAGS@
 H5_CPPFLAGS = @H5_CPPFLAGS@
 H5_CXXFLAGS = @H5_CXXFLAGS@
+H5_CXX_SHARED = @H5_CXX_SHARED@
 H5_FCFLAGS = @H5_FCFLAGS@
+H5_FORTRAN_SHARED = @H5_FORTRAN_SHARED@
+H5_LDFLAGS = @H5_LDFLAGS@
 H5_LONE_COLON = @H5_LONE_COLON@
 H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
@@ -497,10 +519,10 @@ clean-checkPROGRAMS:
 	rm -f $$list
 h5copy$(EXEEXT): $(h5copy_OBJECTS) $(h5copy_DEPENDENCIES) 
 	@rm -f h5copy$(EXEEXT)
-	$(h5copy_LINK) $(h5copy_OBJECTS) $(h5copy_LDADD) $(LIBS)
+	$(AM_V_CCLD)$(h5copy_LINK) $(h5copy_OBJECTS) $(h5copy_LDADD) $(LIBS)
 h5copygentest$(EXEEXT): $(h5copygentest_OBJECTS) $(h5copygentest_DEPENDENCIES) 
 	@rm -f h5copygentest$(EXEEXT)
-	$(LINK) $(h5copygentest_OBJECTS) $(h5copygentest_LDADD) $(LIBS)
+	$(AM_V_CCLD)$(LINK) $(h5copygentest_OBJECTS) $(h5copygentest_LDADD) $(LIBS)
 
 mostlyclean-compile:
 	-rm -f *.$(OBJEXT)
@@ -512,22 +534,25 @@ distclean-compile:
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5copygentest.Po@am__quote@
 
 .c.o:
-@am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
-@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@am__fastdepCC_TRUE@	$(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+@am__fastdepCC_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@am__fastdepCC_FALSE@	$(AM_V_CC) @AM_BACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(COMPILE) -c $<
 
 .c.obj:
-@am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
-@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@am__fastdepCC_TRUE@	$(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
+@am__fastdepCC_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@am__fastdepCC_FALSE@	$(AM_V_CC) @AM_BACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(COMPILE) -c `$(CYGPATH_W) '$<'`
 
 .c.lo:
-@am__fastdepCC_TRUE@	$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
-@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
+@am__fastdepCC_TRUE@	$(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+@am__fastdepCC_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
+@am__fastdepCC_FALSE@	$(AM_V_CC) @AM_BACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(LTCOMPILE) -c -o $@ $<
diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh
index 1c54c8b..3816def 100644
--- a/tools/h5copy/testh5copy.sh
+++ b/tools/h5copy/testh5copy.sh
@@ -416,7 +416,7 @@ COPY_EXT_LINKS()
     TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy1_group
 
     echo "Test copying a group contains external links with -f ext"
-    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -f ext -s /group_ext -d /copy2_group
+    TOOLTEST -f ext -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy2_group
 
     # Verify that the file created above is correct
     H5LSTEST $FILEOUT