[svn-r23600] Bring revisions #23085 - #23341 from trunk to revise_chunks.

h5committested.

4 files changed, 428 insertions, 354 deletions

diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt
index 95341a2..7f68e76 100644
--- a/tools/h5copy/CMakeLists.txt
+++ b/tools/h5copy/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 2.8.6)
+cmake_minimum_required (VERSION 2.8.10)
 PROJECT (HDF5_TOOLS_H5COPY)
 
 #-----------------------------------------------------------------------------
@@ -44,9 +44,6 @@ IF (BUILD_TESTING)
 
   SET (LIST_OTHER_TEST_FILES
       ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_misc1.out
-      ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_extlinks_src.out.ls
-      ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_ref.out.ls
-      ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copytst.out.ls
   )
 
   FILE (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
@@ -62,20 +59,6 @@ IF (BUILD_TESTING)
         ARGS       -E copy_if_different ${listfiles} ${dest}
     )
   ENDFOREACH (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
-
-  #
-  # This section can be removed, but leave here for a reference later.
-  # Purpose: '-l3' ignores top 3 lines when copy text file.
-  #
-  #FOREACH (listfiles ${LIST_OTHER_TEST_FILES})
-  #  SET (lsdest "${PROJECT_BINARY_DIR}/testfiles/${listfiles}")
-  #  ADD_CUSTOM_COMMAND (
-  #      TARGET     h5copy
-  #      POST_BUILD
-  #      COMMAND    ${XLATE_UTILITY}
-  #      ARGS       ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/${listfiles} ${lsdest} -l3
-  #  )
-  #ENDFOREACH (listfiles ${LIST_OTHER_TEST_FILES})
   
 ##############################################################################
 ##############################################################################
@@ -86,89 +69,189 @@ IF (BUILD_TESTING)
   #
   # Perform h5copy according to passing parmeters
   #
-  MACRO (ADD_H5_F_TEST testname resultcode infile outfile fparam vparam sparam srcname dparam dstname)
+  MACRO (ADD_H5_F_TEST testname resultcode infile fparam vparam sparam srcname dparam dstname)
+    IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+      # Remove any output file left over from previous test run
+      ADD_TEST (
+          NAME H5COPY_F-${testname}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove 
+              ./testfiles/${testname}.out.h5
+      )
+    ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+
     ADD_TEST (
         NAME H5COPY_F-${testname}
-        COMMAND $<TARGET_FILE:h5copy> -f ${fparam} -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
+        COMMAND $<TARGET_FILE:h5copy> -f ${fparam} -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
     )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5COPY_F-${testname} PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    SET (last_test "H5COPY_F-${testname}")
-    ADD_H5_DIFF_TEST (${testname} ${resultcode} ${last_test} ${infile} ${outfile} ${srcname} ${dstname})
+    IF (HDF5_ENABLE_USING_MEMCHECKER)
+      IF (NOT "${last_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5COPY_F-${testname} PROPERTIES DEPENDS ${last_test})
+      ENDIF (NOT "${last_test}" STREQUAL "")
+    ELSE (HDF5_ENABLE_USING_MEMCHECKER)
+      SET_TESTS_PROPERTIES (H5COPY_F-${testname} PROPERTIES DEPENDS H5COPY_F-${testname}-clear-objects)
+    ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
+
+    # resultcode=2 will cause the test to skip the diff test
+    IF (NOT ${resultcode} STREQUAL "2")
+      ADD_TEST (
+          NAME H5COPY_F-${testname}-DIFF
+          COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname}
+      )
+      SET_TESTS_PROPERTIES(H5COPY_F-${testname}-DIFF PROPERTIES DEPENDS H5COPY_F-${testname})
+      IF (${resultcode} STREQUAL "1")
+        SET_TESTS_PROPERTIES (H5COPY_F-${testname}-DIFF PROPERTIES WILL_FAIL "true")
+      ENDIF (${resultcode} STREQUAL "1")
+    ENDIF (NOT ${resultcode} STREQUAL "2")
   ENDMACRO (ADD_H5_F_TEST)
   
-  MACRO (ADD_H5_TEST testname resultcode infile outfile vparam sparam srcname dparam dstname)
+  MACRO (ADD_H5_TEST testname resultcode infile vparam sparam srcname dparam dstname)
+    IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+      # Remove any output file left over from previous test run
+      ADD_TEST (
+          NAME H5COPY-${testname}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove 
+              ./testfiles/${testname}.out.h5
+      )
+    ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+
     ADD_TEST (
         NAME H5COPY-${testname}
-        COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
+        COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
     )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    SET (last_test "H5COPY-${testname}")
-    ADD_H5_DIFF_TEST (${testname} ${resultcode} ${last_test} ${infile} ${outfile} ${srcname} ${dstname})
+    IF (HDF5_ENABLE_USING_MEMCHECKER)
+      IF (NOT "${last_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS ${last_test})
+      ENDIF (NOT "${last_test}" STREQUAL "")
+    ELSE (HDF5_ENABLE_USING_MEMCHECKER)
+      SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS H5COPY-${testname}-clear-objects)
+    ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
+
+    # resultcode=2 will cause the test to skip the diff test
+    IF (NOT ${resultcode} STREQUAL "2")
+      ADD_TEST (
+          NAME H5COPY-${testname}-DIFF
+          COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname}
+      )
+      SET_TESTS_PROPERTIES(H5COPY-${testname}-DIFF PROPERTIES DEPENDS H5COPY-${testname})
+      IF (${resultcode} STREQUAL "1")
+        SET_TESTS_PROPERTIES (H5COPY-${testname}-DIFF PROPERTIES WILL_FAIL "true")
+      ENDIF (${resultcode} STREQUAL "1")
+    ENDIF (NOT ${resultcode} STREQUAL "2")
   ENDMACRO (ADD_H5_TEST)
   
-  MACRO (ADD_H5_DIFF_TEST testname resultcode testdepends infile outfile srcname dstname)
+  MACRO (ADD_H5_TEST2 testname resultcode infile  psparam pdparam vparam sparam srcname dparam dstname)
+    IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+      # Remove any output file left over from previous test run
+      ADD_TEST (
+          NAME H5COPY-${testname}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove 
+              ./testfiles/${testname}.out.h5
+      )
+    ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+
+    ADD_TEST (
+        NAME H5COPY-${testname}-prefill
+        COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 -v -s ${psparam} -d ${pdparam}
+    )
+    IF (HDF5_ENABLE_USING_MEMCHECKER)
+      IF (NOT "${last_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5COPY-${testname}-prefill PROPERTIES DEPENDS ${last_test})
+      ENDIF (NOT "${last_test}" STREQUAL "")
+    ELSE (HDF5_ENABLE_USING_MEMCHECKER)
+      SET_TESTS_PROPERTIES (H5COPY-${testname}-prefill PROPERTIES DEPENDS H5COPY-${testname}-clear-objects)
+    ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
+
+    ADD_TEST (
+        NAME H5COPY-${testname}
+        COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
+    )
+    SET_TESTS_PROPERTIES (H5COPY-${testname} PROPERTIES DEPENDS H5COPY-${testname}-prefill)
     # resultcode=2 will cause the test to skip the diff test
     IF (NOT ${resultcode} STREQUAL "2")
       ADD_TEST (
-          NAME H5COPY-DIFF_${testname}
-          COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${outfile} ${srcname} ${dstname}
+          NAME H5COPY-${testname}-DIFF
+          COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname}
       )
-      SET_TESTS_PROPERTIES(H5COPY-DIFF_${testname} PROPERTIES DEPENDS ${testdepends})
-      SET (last_test "H5COPY-DIFF_${testname}")
+      SET_TESTS_PROPERTIES(H5COPY-${testname}-DIFF PROPERTIES DEPENDS H5COPY-${testname})
       IF (${resultcode} STREQUAL "1")
-        SET_TESTS_PROPERTIES (H5COPY-DIFF_${testname} PROPERTIES WILL_FAIL "true")
+        SET_TESTS_PROPERTIES (H5COPY-${testname}-DIFF PROPERTIES WILL_FAIL "true")
       ENDIF (${resultcode} STREQUAL "1")
     ENDIF (NOT ${resultcode} STREQUAL "2")
-  ENDMACRO (ADD_H5_DIFF_TEST)
+  ENDMACRO (ADD_H5_TEST2)
+  
+  MACRO (ADD_H5_TEST_SAME testname resultcode pfile psparam pdparam vparam sparam srcname dparam dstname)
+    IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+      # Remove any output file left over from previous test run
+      ADD_TEST (
+          NAME H5COPY_SAME-${testname}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove 
+              ./testfiles/${testname}.out.h5
+      )
+    ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
 
-  #
-  # Test result with h5ls
-  #
-  MACRO (ADD_H5LS_TEST file filetest)
-    # If using memchecker add tests without using scripts
+    ADD_TEST (
+        NAME H5COPY_SAME-${testname}-prefill
+        COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${pfile} -o ./testfiles/${testname}.out.h5 -v -s ${psparam} -d ${pdparam}
+    )
     IF (HDF5_ENABLE_USING_MEMCHECKER)
-      ADD_TEST (NAME H5COPY-h5ls_${file}-${filetest} COMMAND $<TARGET_FILE:h5ls> -Svr ./testfiles/${file}.out.h5)
+      IF (NOT "${last_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5COPY_SAME-${testname}-prefill PROPERTIES DEPENDS ${last_test})
+      ENDIF (NOT "${last_test}" STREQUAL "")
     ELSE (HDF5_ENABLE_USING_MEMCHECKER)
+      SET_TESTS_PROPERTIES (H5COPY_SAME-${testname}-prefill PROPERTIES DEPENDS H5COPY_SAME-${testname}-clear-objects)
+    ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
+
+    ADD_TEST (
+        NAME H5COPY_SAME-${testname}
+        COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${testname}.out.h5 -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}
+    )
+    SET_TESTS_PROPERTIES (H5COPY_SAME-${testname} PROPERTIES DEPENDS H5COPY_SAME-${testname}-prefill)
+    # resultcode=2 will cause the test to skip the diff test
+    IF (NOT ${resultcode} STREQUAL "2")
       ADD_TEST (
-          NAME H5COPY-h5ls_${file}-${filetest}
-          COMMAND "${CMAKE_COMMAND}"
-              -D "TEST_PROGRAM=$<TARGET_FILE:h5ls>"
-              -D "TEST_ARGS=-Svr;./testfiles/${file}.out.h5"
-              -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_OUTPUT=./testfiles/${file}.out.out"
-              -D "TEST_EXPECT=0"
-              -D "TEST_REFERENCE=./testfiles/${file}.out.ls"
-              -D "TEST_MASK=true"
-              -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
+          NAME H5COPY_SAME-${testname}-DIFF
+          COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${testname}.out.h5 ./testfiles/${testname}.out.h5 ${srcname} ${dstname}
       )
-    ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5COPY-h5ls_${file}-${filetest} PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    SET (last_test "H5COPY-h5ls_${file}-${filetest}")
-  ENDMACRO (ADD_H5LS_TEST)
+      SET_TESTS_PROPERTIES(H5COPY_SAME-${testname}-DIFF PROPERTIES DEPENDS H5COPY_SAME-${testname})
+      IF (${resultcode} STREQUAL "1")
+        SET_TESTS_PROPERTIES (H5COPY_SAME-${testname}-DIFF PROPERTIES WILL_FAIL "true")
+      ENDIF (${resultcode} STREQUAL "1")
+    ENDIF (NOT ${resultcode} STREQUAL "2")
+  ENDMACRO (ADD_H5_TEST_SAME)
 
   #
   # Similiar to ADD_H5_TEST macro. Compare to outputs from source & target
   # files instead of checking with h5ls.
   #
-  MACRO (ADD_H5_CMP_TEST testname resultcode infile outfile vparam sparam srcname dparam dstname)
+  MACRO (ADD_H5_CMP_TEST testname resultcode infile vparam sparam srcname dparam dstname)
     # If using memchecker add tests without using scripts
     IF (HDF5_ENABLE_USING_MEMCHECKER)
-      ADD_TEST (NAME H5COPY-CMP-${testname} COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${outfile} ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN})
+      ADD_TEST (NAME H5COPY-CMP-${testname} COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN})
       IF (${resultcode} STREQUAL "1")
         SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES WILL_FAIL "true")
       ENDIF (${resultcode} STREQUAL "1")
+      IF (NOT "${last_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES DEPENDS ${last_test})
+      ENDIF (NOT "${last_test}" STREQUAL "")
     ELSE (HDF5_ENABLE_USING_MEMCHECKER)
+      # Remove any output file left over from previous test run
+      ADD_TEST (
+          NAME H5COPY-CMP-${testname}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove 
+              ./testfiles/${testname}.out.h5
+              ./testfiles/${testname}.out.out
+              ./testfiles/${testname}.out.out.err
+      )
       ADD_TEST (
           NAME H5COPY-CMP-${testname}
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5copy>"
-              -D "TEST_ARGS=-i;./testfiles/${infile};-o;./testfiles/${outfile};${vparam};${sparam};${srcname};${dparam};${dstname}"
+              -D "TEST_ARGS=-i;./testfiles/${infile};-o;./testfiles/${testname}.out.h5;${vparam};${sparam};${srcname};${dparam};${dstname}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
               -D "TEST_OUTPUT=./testfiles/${testname}.out.out"
               -D "TEST_EXPECT=${resultcode}"
@@ -176,11 +259,8 @@ IF (BUILD_TESTING)
               -D "TEST_MASK=true"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
+      SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES DEPENDS H5COPY-CMP-${testname}-clear-objects)
     ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5COPY-CMP-${testname} PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    SET (last_test "H5COPY-CMP-${testname}")
   ENDMACRO (ADD_H5_CMP_TEST)
 
 ##############################################################################
@@ -197,172 +277,135 @@ IF (BUILD_TESTING)
   SET (HDF_EXT_SRC_FILE h5copy_extlinks_src)
   SET (HDF_EXT_TRG_FILE h5copy_extlinks_trg)
 
-  # Remove any output file left over from previous test run
-  ADD_TEST (
-      NAME H5COPY-clearall-objects
-      COMMAND    ${CMAKE_COMMAND}
-          -E remove 
-          ./testfiles/${HDF_FILE1}.out.h5
-          ./testfiles/${HDF_FILE1}.out.out
-          ./testfiles/${HDF_FILE1}.out.out.err
-          ./testfiles/${HDF_FILE2}.out.h5
-          ./testfiles/${HDF_FILE2}.out.out
-          ./testfiles/${HDF_FILE2}.out.out.err
-          ./testfiles/${HDF_EXT_SRC_FILE}.out.h5
-          ./testfiles/${HDF_EXT_SRC_FILE}.out.out
-          ./testfiles/${HDF_EXT_SRC_FILE}.out.out.err
-  )
-  IF (NOT "${last_test}" STREQUAL "")
-    SET_TESTS_PROPERTIES (H5COPY-clearall-objects PROPERTIES DEPENDS ${last_test})
-  ENDIF (NOT "${last_test}" STREQUAL "")
-  SET (last_test "H5COPY-clearall-objects")
+  IF (HDF5_ENABLE_USING_MEMCHECKER)
+    # Remove any output file left over from previous test run
+    ADD_TEST (
+        NAME H5COPY-clearall-objects
+        COMMAND    ${CMAKE_COMMAND}
+            -E remove 
+            simple.out.h5
+            chunk.out.h5
+            compact.out.h5
+            compound.out.h5
+            compressed.out.h5
+            named_vl.out.h5
+            nested_vl.out.h5
+            simple_top.out.h5
+            dsrename.out.h5
+            grp_empty.out.h5
+            grp_dsets.out.h5
+            grp_nested.out.h5
+            simple_group.out.h5
+            grp_rename.out.h5
+            grp_dsets_rename.out.h5
+            A_B1_simple.out.h5
+            A_B2_simple2.out.h5
+            C_D_simple.out.h5
+            E_F_grp_dsets.out.h5
+            G_H_grp_nested.out.h5
+            region_ref.out.h5
+            ext_link.out.h5
+            ext_link_f.out.h5
+            ext_dangle_noobj.out.h5
+            ext_dangle_noobj_f.out.h5
+            ext_dangle_nofile.out.h5
+            ext_dangle_nofile_f.out.h5
+            ext_link_group.out.h5
+            ext_link_group_f.out.h5
+            samefile1.out.h5
+            samefile2.out.h5
+            h5copy_misc1.out.h5
+            h5copy_misc1.out.out
+            h5copy_misc1.out.out.err
+    )
+    SET_TESTS_PROPERTIES (H5COPY-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
+    IF (NOT "${last_test}" STREQUAL "")
+      SET_TESTS_PROPERTIES (H5COPY-clearall-objects PROPERTIES DEPENDS ${last_test})
+    ENDIF (NOT "${last_test}" STREQUAL "")
+    SET (last_test "H5COPY-clearall-objects")
+  ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
   
   # "Test copying various forms of datasets"
-  ADD_H5_TEST (simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s simple -d simple)
-  ADD_H5_TEST (chunk 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s chunk -d chunk)
-  ADD_H5_TEST (compact 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compact -d compact)
-  ADD_H5_TEST (compound 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compound -d compound)
-  ADD_H5_TEST (compressed 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compressed -d compressed)
-  ADD_H5_TEST (named_vl 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s named_vl -d named_vl)
-  ADD_H5_TEST (nested_vl 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s nested_vl -d nested_vl)
+  ADD_H5_TEST (simple 0 ${HDF_FILE1}.h5 -v -s simple -d simple)
+  ADD_H5_TEST (chunk 0 ${HDF_FILE1}.h5 -v -s chunk -d chunk)
+  ADD_H5_TEST (compact 0 ${HDF_FILE1}.h5 -v -s compact -d compact)
+  ADD_H5_TEST (compound 0 ${HDF_FILE1}.h5 -v -s compound -d compound)
+  ADD_H5_TEST (compressed 0 ${HDF_FILE1}.h5 -v -s compressed -d compressed)
+  ADD_H5_TEST (named_vl 0 ${HDF_FILE1}.h5 -v -s named_vl -d named_vl)
+  ADD_H5_TEST (nested_vl 0 ${HDF_FILE1}.h5 -v -s nested_vl -d nested_vl)
 
   # "Test copying dataset within group in source file to root of destination"
-  ADD_H5_TEST (simple_top 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets/simple -d simple_top)
+  ADD_H5_TEST (simple_top 0 ${HDF_FILE1}.h5 -v -s grp_dsets/simple -d simple_top)
 
   # "Test copying & renaming dataset"
-  ADD_H5_TEST (rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s compound -d rename)
+  ADD_H5_TEST (dsrename 0 ${HDF_FILE1}.h5 -v -s compound -d rename)
 
   # "Test copying empty, 'full' & 'nested' groups"
-  ADD_H5_TEST (grp_empty 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_empty -d grp_empty)
-  ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d grp_dsets)
-  ADD_H5_TEST (grp_nested 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_nested -d grp_nested)
+  ADD_H5_TEST (grp_empty 0 ${HDF_FILE1}.h5 -v -s grp_empty -d grp_empty)
+  ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1}.h5 -v -s grp_dsets -d grp_dsets)
+  ADD_H5_TEST (grp_nested 0 ${HDF_FILE1}.h5 -v -s grp_nested -d grp_nested)
 
   # "Test copying dataset within group in source file to group in destination"
-  ADD_H5_TEST (simple_group 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets/simple -d /grp_dsets/simple_group)
+  ADD_H5_TEST2 (simple_group 0 ${HDF_FILE1}.h5 grp_dsets grp_dsets -v -s /grp_dsets/simple -d /grp_dsets/simple_group)
 
   # "Test copying & renaming group"
-  ADD_H5_TEST (grp_rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d grp_rename)
+  ADD_H5_TEST (grp_rename 0 ${HDF_FILE1}.h5 -v -s grp_dsets -d grp_rename)
 
   # "Test copying 'full' group hierarchy into group in destination file"
-  ADD_H5_TEST (grp_dsets_rename 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s grp_dsets -d /grp_rename/grp_dsets)
+  ADD_H5_TEST2 (grp_dsets_rename 0 ${HDF_FILE1}.h5 grp_dsets grp_rename -v -s grp_dsets -d /grp_rename/grp_dsets)
 
   # "Test copying objects into group hier. that doesn't exist yet in destination file"
-  ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s simple -d /A/B1/simple)
-  ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s simple -d /A/B2/simple2)
-  ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_dsets/simple -d /C/D/simple)
-  ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets)
-  ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -vp -s /grp_nested -d /G/H/grp_nested)
-
-  # Verify that the file created above is correct
-  ADD_H5LS_TEST (${HDF_FILE1} basic)
+  ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1}.h5 -vp -s simple -d /A/B1/simple)
+  ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1}.h5 -vp -s simple -d /A/B2/simple2)
+  ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1}.h5 -vp -s /grp_dsets/simple -d /C/D/simple)
+  ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1}.h5 -vp -s /grp_dsets -d /E/F/grp_dsets)
+  ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1}.h5 -vp -s /grp_nested -d /G/H/grp_nested)
   
 ############# COPY REFERENCES ##############
 
-  # Remove any output file left over from previous test run
-  ADD_TEST (
-      NAME H5COPY-clear-refs
-      COMMAND    ${CMAKE_COMMAND}
-          -E remove 
-          ./testfiles/${HDF_FILE2}.out.h5
-          ./testfiles/${HDF_FILE2}.out.out
-          ./testfiles/${HDF_FILE2}.out.out.err
-  )
-  IF (NOT "${last_test}" STREQUAL "")
-    SET_TESTS_PROPERTIES (H5COPY-clear-refs PROPERTIES DEPENDS ${last_test})
-  ENDIF (NOT "${last_test}" STREQUAL "")
-  SET (last_test "H5COPY-clear-refs")
-
   # "Test copying object and region references"
-  ADD_H5_F_TEST (region_ref 2 ${HDF_FILE2}.h5 ${HDF_FILE2}.out.h5 ref -v -s / -d /COPY)
-
-  # Verify that the file created above is correct
-  ADD_H5LS_TEST (${HDF_FILE2} refs)
+  ADD_H5_F_TEST (region_ref 2 ${HDF_FILE2}.h5 ref -v -s / -d /COPY)
 
 ############# COPY EXT LINKS ############## 
 
-  # Remove any output file left over from previous test run
-  ADD_TEST (
-      NAME H5COPY-clear-ext-links
-      COMMAND    ${CMAKE_COMMAND}
-          -E remove 
-          ./testfiles/${HDF_EXT_SRC_FILE}.out.h5
-          ./testfiles/${HDF_EXT_SRC_FILE}.out.out
-          ./testfiles/${HDF_EXT_SRC_FILE}.out.out.err
-  )
-  IF (NOT "${last_test}" STREQUAL "")
-    SET_TESTS_PROPERTIES (H5COPY-clear-ext-links PROPERTIES DEPENDS ${last_test})
-  ENDIF (NOT "${last_test}" STREQUAL "")
-  SET (last_test "H5COPY-clear-ext-links")
-
   # "Test copying external link directly without -f ext"
-  ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_dset -d /copy1_dset)
+  ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_dset -d /copy1_dset)
 
   # "Test copying external link directly with -f ext"
-  ADD_H5_F_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_dset -d /copy2_dset)
+  ADD_H5_F_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_dset -d /copy2_dset)
 
   # "Test copying dangling external link (no obj) directly without -f ext"
-  ADD_H5_TEST (ext_dangle_noobj 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_1)
+  ADD_H5_TEST (ext_dangle_noobj 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_1)
 
   # "Test copying dangling external link (no obj) directly with -f ext"
-  ADD_H5_F_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2)
+  ADD_H5_F_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2)
 
   # "Test copying dangling external link (no file) directly without -f ext"
-  ADD_H5_TEST (ext_dangle_nofile 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_1)
+  ADD_H5_TEST (ext_dangle_nofile 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_1)
 
   # "Test copying dangling external link (no file) directly with -f ext"
-  ADD_H5_F_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2)
+  ADD_H5_F_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2)
 
   # "Test copying a group contains external links without -f ext"
-  ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 -v -s /group_ext -d /copy1_group)
+  ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext -d /copy1_group)
 
   # "Test copying a group contains external links with -f ext"
-  ADD_H5_F_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE}.h5 ${HDF_EXT_SRC_FILE}.out.h5 ext -v -s /group_ext -d /copy2_group) 
-
-  # Verify that the file created above is correct
-  ADD_H5LS_TEST (${HDF_EXT_SRC_FILE} links)
+  ADD_H5_F_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext -d /copy2_group) 
 
 ############# Test misc. ############## 
-  # Remove any output file left over from previous test run
-  ADD_TEST (
-      NAME H5COPY-clear-misc
-      COMMAND    ${CMAKE_COMMAND}
-          -E remove 
-          ./testfiles/h5copy_misc1.out.out
-          ./testfiles/h5copy_misc1.out.out.err
-          ./testfiles/${HDF_FILE1}.out.h5
-  )
-  IF (NOT "${last_test}" STREQUAL "")
-    SET_TESTS_PROPERTIES (H5COPY-clear-misc PROPERTIES DEPENDS ${last_test})
-  ENDIF (NOT "${last_test}" STREQUAL "")
-  SET (last_test "H5COPY-clear-misc")
 
   #-----------------------------------------------------------------
   # "Test copying object into group which doesn't exist, without -p"
   #
-  ADD_H5_CMP_TEST (h5copy_misc1 1 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /g1/g2/simple)
-  # Remove any output file left over from previous test run
-  ADD_TEST (
-      NAME H5COPY-clear-samefile
-      COMMAND    ${CMAKE_COMMAND}
-          -E remove 
-          ./testfiles/${HDF_FILE1}.out.h5
-  )
-  IF (NOT "${last_test}" STREQUAL "")
-    SET_TESTS_PROPERTIES (H5COPY-clear-samefile PROPERTIES DEPENDS ${last_test})
-  ENDIF (NOT "${last_test}" STREQUAL "")
-  SET (last_test "H5COPY-clear-samefile")
+  ADD_H5_CMP_TEST (h5copy_misc1 1 ${HDF_FILE1}.h5 -v -s /simple -d /g1/g2/simple)
   
   #-------------------------------------------
   # "Test copying objects to the same file "
   #
-  # create temporary test file with some objects
-  ADD_H5_TEST (samefile1_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /simple)
-  ADD_H5_TEST (samefile2_pre 0 ${HDF_FILE1}.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets -d /grp_dsets)
-  # actual test cases
   # - dataset
-  ADD_H5_TEST (samefile1 0 ${HDF_FILE1}.out.h5 ${HDF_FILE1}.out.h5 -v -s /simple -d /simple_cp)
+  ADD_H5_TEST_SAME (samefile1 0 ${HDF_FILE1}.h5 /simple /simple -v -s /simple -d /simple_cp)
   # - group with some datasets
-  ADD_H5_TEST (samefile2 0 ${HDF_FILE1}.out.h5 ${HDF_FILE1}.out.h5 -v -s /grp_dsets -d /grp_dsets_cp)
+  ADD_H5_TEST_SAME (samefile2 0 ${HDF_FILE1}.h5 /grp_dsets /grp_dsets -v -s /grp_dsets -d /grp_dsets_cp)
 ENDIF (BUILD_TESTING)
 
 ##############################################################################
diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in
index da9d0b7..3278f80 100644
--- a/tools/h5copy/Makefile.in
+++ b/tools/h5copy/Makefile.in
@@ -234,6 +234,7 @@ H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
 HAVE_DMALLOC = @HAVE_DMALLOC@
 HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
+HAVE_PTHREAD = @HAVE_PTHREAD@
 HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
 HDF_CXX = @HDF_CXX@
@@ -285,7 +286,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PARALLEL = @PARALLEL@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PERL = @PERL@
-PTHREAD = @PTHREAD@
 RANLIB = @RANLIB@
 ROOT = @ROOT@
 RUNPARALLEL = @RUNPARALLEL@
diff --git a/tools/h5copy/testfiles/h5copy_misc1.out b/tools/h5copy/testfiles/h5copy_misc1.out
index 10dd1a6..1624f2b 100644
--- a/tools/h5copy/testfiles/h5copy_misc1.out
+++ b/tools/h5copy/testfiles/h5copy_misc1.out
@@ -1,3 +1,3 @@
-Copying file <./testfiles/h5copytst.h5> and object </simple> to file <./testfiles/h5copytst.out.h5> and object </g1/g2/simple>
+Copying file <./testfiles/h5copytst.h5> and object </simple> to file <./testfiles/h5copy_misc1.out.h5> and object </g1/g2/simple>
 Error in copy...Exiting
 h5copy error: group </g1> doesn't exist. Use -p to create parent groups.
diff --git a/tools/h5copy/testh5copy.sh.in b/tools/h5copy/testh5copy.sh.in
index c7acd9a..d30d8d8 100644
--- a/tools/h5copy/testh5copy.sh.in
+++ b/tools/h5copy/testh5copy.sh.in
@@ -57,9 +57,6 @@ $SRC_H5COPY_TESTFILES/h5copy_extlinks_trg.h5
 
 # List of expect files that will be copied over to local test dir
 LIST_OTHER_TEST_FILES="
-$SRC_H5COPY_TESTFILES/h5copy_extlinks_src.out.ls
-$SRC_H5COPY_TESTFILES/h5copy_ref.out.ls
-$SRC_H5COPY_TESTFILES/h5copytst.out.ls
 $SRC_H5COPY_TESTFILES/h5copy_misc1.out
 "
 
@@ -151,15 +148,6 @@ VERIFY()
 # Print a line-line message left justified in a field of 70 characters
 # beginning with the word "Verifying".
 #
-VERIFY_H5LS() 
-{
-    SPACES="                                                               "
-    echo "Verifying h5ls file structure $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Verifying".
-#
 VERIFY_OUTPUT() 
 {
     SPACES="                                                               "
@@ -183,24 +171,34 @@ TOOLTEST()
 {
     actualout="$TESTDIR/tooltest.actualout"
     actualerr="$TESTDIR/tooltest.actualerr"
-     runh5diff=yes
-     if [ "$1" = -i ]; then
-      inputfile=$2
-     else
-      runh5diff=no
-     fi
-     if [ "$3" = -o ]; then
-      outputfile=$4
-     else 
-      runh5diff=no
-     fi
+    runh5diff=yes
+    if [ "$1" = -i ]; then
+        inputfile=$2
+    else
+        if [ "$1" = -f ]; then
+            inputfile=$4
+        else
+            inputfile=$3
+        fi
+        runh5diff=no
+    fi
+    if [ "$3" = -o ]; then
+        outputfile=$4
+    else 
+        if [ "$1" = -f ]; then
+            outputfile=$6
+        else
+            outputfile=$5
+        fi
+        runh5diff=no
+    fi
   
     TESTING $H5COPY $@
     (
-    echo "#############################"
-    echo " output for '$H5COPY $@'"
-    echo "#############################"
-    $RUNSERIAL $H5COPY_BIN $@
+        echo "#############################"
+        echo " output for '$H5COPY $@'"
+        echo "#############################"
+        $RUNSERIAL $H5COPY_BIN $@
     ) > $actualout 2> $actualerr
     RET=$?
     if [ $RET != 0 ]; then
@@ -210,15 +208,141 @@ TOOLTEST()
         nerrors="`expr $nerrors + 1`"
     else
         echo " PASSED"
+    
+        if [ $runh5diff != no ]; then
+            H5DIFFTEST $inputfile $outputfile $7 $9
+        fi
 
         # Clean up output file
         if test -z "$HDF5_NOCLEANUP"; then
-           rm -f $actualout $actualerr
+            rm -f $actualout $actualerr $outputfile
+        fi
+    fi
+}
+
+# TOOLTEST back-to-back
+TOOLTEST_PREFILL() 
+{
+    actualout="$TESTDIR/tooltest.actualout"
+    actualerr="$TESTDIR/tooltest.actualerr"
+    runh5diff=yes
+    if [ "$1" = -i ]; then
+        inputfile=$2
+    else
+        runh5diff=no
+    fi
+    if [ "$3" = -o ]; then
+        outputfile=$4
+    else 
+        runh5diff=no
+    fi
+    
+    grp_name=$5
+    grp_name2=$6
+    obj_name=$7
+    obj_name2=$8
+  
+    TESTING $H5COPY $@
+    (
+        echo "#############################"
+        echo " output for '$H5COPY $@'"
+        echo "#############################"
+        $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name2 
+    ) > $actualout 2> $actualerr
+    RET=$?
+    if [ $RET != 0 ]; then
+        echo "*FAILED*"
+        echo "failed result is:"
+        cat $actualout
+        nerrors="`expr $nerrors + 1`"
+    else
+        TESTING $H5COPY $@
+        (
+            echo "#############################"
+            echo " output for '$H5COPY $@'"
+            echo "#############################"
+            $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $obj_name -d $obj_name2 
+        ) > $actualout 2> $actualerr
+        RET=$?
+        if [ $RET != 0 ]; then
+            echo "*FAILED*"
+            echo "failed result is:"
+            cat $actualout
+            nerrors="`expr $nerrors + 1`"
+        else
+            echo " PASSED"
+    
+            if [ $runh5diff != no ]; then
+                H5DIFFTEST $inputfile $outputfile $obj_name $obj_name2
+            fi
+        
+            # Clean up output file
+            if test -z "$HDF5_NOCLEANUP"; then
+                rm -f $actualout $actualerr $outputfile
+            fi
         fi
     fi
+}
+
+# TOOLTEST back-to-back
+TOOLTEST_SAME() 
+{
+    actualout="$TESTDIR/tooltest.actualout"
+    actualerr="$TESTDIR/tooltest.actualerr"
+    runh5diff=yes
+    if [ "$1" = -i ]; then
+        inputfile=$2
+    else
+        runh5diff=no
+    fi
+    if [ "$3" = -o ]; then
+        outputfile=$4
+    else 
+        runh5diff=no
+    fi
     
-    if [ $runh5diff != no ]; then
-     H5DIFFTEST $inputfile $outputfile $7 $9
+    grp_name=$5
+    grp_name2=$6
+  
+    TESTING $H5COPY $@
+    (
+        echo "#############################"
+        echo " output for '$H5COPY $@'"
+        echo "#############################"
+        $RUNSERIAL $H5COPY_BIN  -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name 
+    ) > $actualout 2> $actualerr
+    RET=$?
+    if [ $RET != 0 ]; then
+        echo "*FAILED*"
+        echo "failed result is:"
+        cat $actualout
+        nerrors="`expr $nerrors + 1`"
+    else
+        TESTING $H5COPY $@
+        (
+            echo "#############################"
+            echo " output for '$H5COPY $@'"
+            echo "#############################"
+            $RUNSERIAL $H5COPY_BIN  -i $outputfile -o $outputfile -v -s $grp_name -d $grp_name2 
+        ) > $actualout 2> $actualerr
+        RET=$?
+        if [ $RET != 0 ]; then
+            echo "*FAILED*"
+            echo "failed result is:"
+            cat $actualout
+            nerrors="`expr $nerrors + 1`"
+        else
+            echo " PASSED"
+    
+            if [ $runh5diff != no ]; then
+                H5DIFFTEST $outputfile $outputfile $grp_name $grp_name2
+            fi
+        
+            # Clean up output file
+            if test -z "$HDF5_NOCLEANUP"; then
+                rm -f $actualout $actualerr $outputfile
+            fi
+        fi
     fi
 }
 
@@ -259,18 +383,18 @@ TOOLTEST_FAIL()
     actualerr_sav=${actualerr}-sav
     shift
     if [ "$1" = -i ]; then
-      inputfile=$2
+        inputfile=$2
     fi
     if [ "$3" = -o ]; then
-      outputfile=$4
+        outputfile=$4
     fi
 
     TESTING $H5COPY $@
     (
-    #echo "#############################"
-    #echo " output for '$H5COPY $@'"
-    #echo "#############################"
-    $RUNSERIAL $H5COPY_BIN $@
+        #echo "#############################"
+        #echo " output for '$H5COPY $@'"
+        #echo "#############################"
+        $RUNSERIAL $H5COPY_BIN $@
     ) > $actualout 2> $actualerr
 
     RET=$?
@@ -298,7 +422,7 @@ TOOLTEST_FAIL()
 
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
-       rm -f $actualout $actualerr $actualout_sav $actualerr_sav
+        rm -f $actualout $actualerr $actualout_sav $actualerr_sav $outputfile
     fi
 }
 
@@ -311,10 +435,10 @@ H5DIFFTEST()
     $RUNSERIAL $H5DIFF_BIN -q "$@" 
     RET=$?
     if [ $RET != 0 ] ; then
-         echo "*FAILED*"
-         nerrors="`expr $nerrors + 1`"
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
     else
-         echo " PASSED"
+        echo " PASSED"
     fi
 }
 
@@ -327,50 +451,13 @@ H5DIFFTEST_FAIL()
     RET=$?
 
     if [ $h5haveexitcode = 'yes' -a $RET != 1 ] ; then
-         echo "*FAILED*"
-         nerrors="`expr $nerrors + 1`"
+        echo "*FAILED*"
+        nerrors="`expr $nerrors + 1`"
     else
-         echo " PASSED"
+        echo " PASSED"
     fi
 }
 
-# Call the h5ls tool to verify the correct output data in the destination file
-#
-H5LSTEST() 
-{
-    expect="$TESTDIR/`basename $1 .h5`.ls"
-    actual="$TESTDIR/`basename $1 .h5`.ls.actualout"
-
-    # Stderr is included in stdout so that the diff can detect
-    # any unexpected output from that stream too.
-    #
-    # Note:  The modification time and storage utilization are masked off
-    #   so that the output is more portable
-    VERIFY_H5LS  $@
-    (
-      $RUNSERIAL $H5LS_BIN $H5LS_ARGS $@
-    ) 2>&1 |sed 's/Modified:.*/Modified:  XXXX-XX-XX XX:XX:XX XXX/' |sed 's/Storage:.*/Storage:   <details removed for portability>/' >$actual
-
-
-   if [ ! -f $expect ]; then
-    # Create the expect file if it doesn't yet exist.
-    echo " CREATED"
-    cp $actual $expect
-   elif $CMP $expect $actual; then
-      echo " PASSED"
-   else
-      echo "*FAILED*"
-      echo "    Expected result (*.ls) differs from actual result (*.out)"
-      nerrors="`expr $nerrors + 1`"
-      test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/    /'
-   fi
-
-   # Clean up output file
-   if test -z "$HDF5_NOCLEANUP"; then
-      rm -f $actual $actual_err
-   fi
-}
-
 # Copy single datasets of various forms from one group to another,
 #       adding object copied to the destination file each time
 #
@@ -379,82 +466,54 @@ H5LSTEST()
 COPY_OBJECTS() 
 {
     TESTFILE="$TESTDIR/h5copytst.h5"
-    FILEOUT="$TESTDIR/`basename h5copytst.h5 .h5`.out.h5"
-
-    # Remove any output file left over from previous test run
-    rm -f $FILEOUT
 
-    echo "Testing from `basename $TESTFILE` to `basename $FILEOUT` for the following tests:"
     echo "Test copying various forms of datasets"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s simple     -d simple
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s chunk      -d chunk
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compact    -d compact
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound   -d compound
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compressed -d compressed
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s named_vl   -d named_vl
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s nested_vl  -d nested_vl
+    TOOLTEST -i $TESTFILE -o $TESTDIR/simple.out.h5 -v -s simple     -d simple
+    TOOLTEST -i $TESTFILE -o $TESTDIR/chunk.out.h5 -v -s chunk      -d chunk
+    TOOLTEST -i $TESTFILE -o $TESTDIR/compact.out.h5 -v -s compact    -d compact
+    TOOLTEST -i $TESTFILE -o $TESTDIR/compound.out.h5 -v -s compound   -d compound
+    TOOLTEST -i $TESTFILE -o $TESTDIR/compressed.out.h5 -v -s compressed -d compressed
+    TOOLTEST -i $TESTFILE -o $TESTDIR/named_vl.out.h5 -v -s named_vl   -d named_vl
+    TOOLTEST -i $TESTFILE -o $TESTDIR/nested_vl.out.h5 -v -s nested_vl  -d nested_vl
 
     echo "Test copying dataset within group in source file to root of destination"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets/simple  -d simple_top
+    TOOLTEST -i $TESTFILE -o $TESTDIR/simple_top.out.h5 -v -s grp_dsets/simple  -d simple_top
 
     echo "Test copying & renaming dataset"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s compound   -d rename
+    TOOLTEST -i $TESTFILE -o $TESTDIR/dsrename.out.h5 -v -s compound   -d rename
 
     echo "Test copying empty, 'full' & 'nested' groups"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_empty  -d grp_empty
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d grp_dsets
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_nested -d grp_nested
+    TOOLTEST -i $TESTFILE -o $TESTDIR/grp_empty.out.h5 -v -s grp_empty  -d grp_empty
+    TOOLTEST -i $TESTFILE -o $TESTDIR/grp_dsets.out.h5 -v -s grp_dsets  -d grp_dsets
+    TOOLTEST -i $TESTFILE -o $TESTDIR/grp_nested.out.h5 -v -s grp_nested -d grp_nested
 
     echo "Test copying dataset within group in source file to group in destination"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets/simple  -d /grp_dsets/simple_group
+    TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/simple_group.out.h5 grp_dsets grp_dsets /grp_dsets/simple /grp_dsets/simple_group
 
     echo "Test copying & renaming group"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d grp_rename
+    TOOLTEST -i $TESTFILE -o $TESTDIR/grp_rename.out.h5 -v -s grp_dsets  -d grp_rename
 
     echo "Test copying 'full' group hierarchy into group in destination file"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets  -d /grp_rename/grp_dsets
+    TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/grp_dsets_rename.out.h5 grp_dsets grp_rename grp_dsets /grp_rename/grp_dsets
 
     echo "Test copying objects into group hier. that doesn't exist yet in destination file"
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple    -d /A/B1/simple
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple    -d /A/B2/simple2
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets/simple    -d /C/D/simple
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets
-    TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested
-
-    # Verify that the file created above is correct
-    H5LSTEST $FILEOUT
-
-    # Remove output file created, if the "no cleanup" environment variable is
-    #   not defined
-    if test -z "$HDF5_NOCLEANUP"; then
-        rm -f $FILEOUT
-    fi
+    TOOLTEST -i $TESTFILE -o $TESTDIR/A_B1_simple.out.h5 -vp -s simple    -d /A/B1/simple
+    TOOLTEST -i $TESTFILE -o $TESTDIR/A_B2_simple2.out.h5 -vp -s simple    -d /A/B2/simple2
+    TOOLTEST -i $TESTFILE -o $TESTDIR/C_D_simple.out.h5 -vp -s /grp_dsets/simple    -d /C/D/simple
+    TOOLTEST -i $TESTFILE -o $TESTDIR/E_F_grp_dsets.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets
+    TOOLTEST -i $TESTFILE -o $TESTDIR/G_H_grp_nested.out.h5 -vp -s /grp_nested -d /G/H/grp_nested
 }
 
 # Copy references in various way.
-# adding to the destination file each time compare the result
 #
 # Assumed arguments:
 # <none>
 COPY_REFERENCES() 
 {
     TESTFILE="$TESTDIR/h5copy_ref.h5"
-    FILEOUT="$TESTDIR/`basename h5copy_ref.h5 .h5`.out.h5"
-
-    # Remove any output file left over from previous test run
-    rm -f $FILEOUT
 
     echo "Test copying object and region references"
-    TOOLTEST -f ref -i $TESTFILE -o $FILEOUT -v -s / -d /COPY
-
-    # Verify that the file created above is correct
-    H5LSTEST $FILEOUT
-
-    # Remove output file created, if the "no cleanup" environment variable is
-    #   not defined
-    if test -z "$HDF5_NOCLEANUP"; then
-        rm -f $FILEOUT
-    fi
+    TOOLTEST_F -f ref -i $TESTFILE -o $TESTDIR/region_ref.out.h5 -v -s / -d /COPY
 }
 
 # Copy external links.
@@ -465,43 +524,30 @@ COPY_REFERENCES()
 COPY_EXT_LINKS() 
 {
     TESTFILE="$TESTDIR/h5copy_extlinks_src.h5"
-    FILEOUT="$TESTDIR/`basename h5copy_extlinks_src.h5 .h5`.out.h5"
-
-    # Remove any output file left over from previous test run
-    rm -f $FILEOUT
 
     echo "Test copying external link directly without -f ext"
-    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_dset -d /copy1_dset
+    TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link.out.h5 -s /group_ext/extlink_dset -d /copy1_dset
 
     echo "Test copying external link directly with -f ext"
-    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_dset -d /copy2_dset
+    TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_link_f.out.h5 -v -s /group_ext/extlink_dset -d /copy2_dset
 
     echo "Test copying dangling external link (no obj) directly without -f ext"
-    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_notyet1 -d /copy_dangle1_1
+    TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_noobj.out.h5 -s /group_ext/extlink_notyet1 -d /copy_dangle1_1
 
     echo "Test copying dangling external link (no obj) directly with -f ext"
-    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2
+    TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_noobj_f.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2
 
     echo "Test copying dangling external link (no file) directly without -f ext"
-    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext/extlink_notyet2 -d /copy_dangle2_1
+    TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_nofile.out.h5 -s /group_ext/extlink_notyet2 -d /copy_dangle2_1
 
     echo "Test copying dangling external link (no file) directly with -f ext"
-    TOOLTEST -f ext -i $TESTFILE -o $FILEOUT -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2
+    TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_nofile_f.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2
 
     echo "Test copying a group contains external links without -f ext"
-    TOOLTEST -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy1_group
+    TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link_group.out.h5 -s /group_ext -d /copy1_group
 
     echo "Test copying a group contains external links with -f ext"
-    TOOLTEST -f ext -v -i $TESTFILE -o $FILEOUT -s /group_ext -d /copy2_group
-
-    # Verify that the file created above is correct
-    H5LSTEST $FILEOUT
-
-    # Remove output file created, if the "no cleanup" environment variable is
-    #   not defined
-    if test -z "$HDF5_NOCLEANUP"; then
-        rm -f $FILEOUT
-    fi
+    TOOLTEST_F -f ext -i $TESTFILE -o $TESTDIR/ext_link_group_f.out.h5 -v -s /group_ext -d /copy2_group
 }
 
 # Test misc.
@@ -511,28 +557,13 @@ COPY_EXT_LINKS()
 TEST_MISC() 
 {
     TESTFILE="$TESTDIR/h5copytst.h5"
-    FILEOUT="$TESTDIR/`basename h5copytst.h5 .h5`.out.h5"
-
-    # Remove any output file left over from previous test run
-    rm -f $FILEOUT
 
     echo "Test copying object into group which doesn't exist, without -p"
-    TOOLTEST_FAIL h5copy_misc1.out -v -i $TESTFILE -o $FILEOUT -s /simple  -d /g1/g2/simple
+    TOOLTEST_FAIL h5copy_misc1.out -i $TESTFILE -o $TESTDIR/h5copy_misc1.out.h5 -v -s /simple  -d /g1/g2/simple
 
     echo "Test copying objects to the same file "
-    rm -f $FILEOUT
-    # create temporary test file ($FILEOUT) with some objects
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /simple -d /simple 
-    TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets  -d /grp_dsets
-    # actual test cases
-    TOOLTEST -i $FILEOUT -o $FILEOUT -v -s /simple -d /simple_cp
-    TOOLTEST -i $FILEOUT -o $FILEOUT -v -s /grp_dsets  -d /grp_dsets_cp
-
-    # Remove output file created, if the "no cleanup" environment variable is
-    #   not defined
-    if test -z "$HDF5_NOCLEANUP"; then
-        rm -f $FILEOUT
-    fi
+    TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile1.out.h5 /simple /simple_cp 
+    TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile2.out.h5 /grp_dsets /grp_dsets_cp
 }
 
 ##############################################################################