diff options
author | Allen Byrne <byrn@hdfgroup.org> | 2016-10-27 15:04:42 (GMT) |
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committer | Allen Byrne <byrn@hdfgroup.org> | 2016-10-27 15:04:42 (GMT) |
commit | 5b562d9ce9b2945d0378b9c03e01f42923da80f4 (patch) | |
tree | 3fa67d9656f2b32330e3fe31996952f60f71cdb9 /tools/h5copy | |
parent | b34423f620b470e1c5dc38cdd3abbd5fe8adc4ec (diff) | |
download | hdf5-5b562d9ce9b2945d0378b9c03e01f42923da80f4.zip hdf5-5b562d9ce9b2945d0378b9c03e01f42923da80f4.tar.gz hdf5-5b562d9ce9b2945d0378b9c03e01f42923da80f4.tar.bz2 |
Split tools into src and test - remove folders
Diffstat (limited to 'tools/h5copy')
-rw-r--r-- | tools/h5copy/CMakeLists.txt | 53 | ||||
-rw-r--r-- | tools/h5copy/CMakeTests.cmake | 373 | ||||
-rw-r--r-- | tools/h5copy/Makefile.am | 50 | ||||
-rw-r--r-- | tools/h5copy/h5copy.c | 534 | ||||
-rw-r--r-- | tools/h5copy/h5copygentest.c | 1004 | ||||
-rw-r--r-- | tools/h5copy/testfiles/h5copy_extlinks_src.h5 | bin | 2184 -> 0 bytes | |||
-rw-r--r-- | tools/h5copy/testfiles/h5copy_extlinks_src.out.ls | 43 | ||||
-rw-r--r-- | tools/h5copy/testfiles/h5copy_extlinks_trg.h5 | bin | 2168 -> 0 bytes | |||
-rw-r--r-- | tools/h5copy/testfiles/h5copy_misc1.out | 3 | ||||
-rw-r--r-- | tools/h5copy/testfiles/h5copy_ref.h5 | bin | 9104 -> 0 bytes | |||
-rw-r--r-- | tools/h5copy/testfiles/h5copy_ref.out.ls | 31 | ||||
-rw-r--r-- | tools/h5copy/testfiles/h5copytst.h5 | bin | 15900 -> 0 bytes | |||
-rw-r--r-- | tools/h5copy/testfiles/h5copytst.out.ls | 429 | ||||
-rw-r--r-- | tools/h5copy/testfiles/h5copytst_new.h5 | bin | 31856 -> 0 bytes | |||
-rw-r--r-- | tools/h5copy/testfiles/h5copytst_new.out.ls | 502 | ||||
-rw-r--r-- | tools/h5copy/testh5copy.sh.in | 607 |
16 files changed, 0 insertions, 3629 deletions
diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt deleted file mode 100644 index 4fcd19b..0000000 --- a/tools/h5copy/CMakeLists.txt +++ /dev/null @@ -1,53 +0,0 @@ -cmake_minimum_required (VERSION 3.1.0) -PROJECT (HDF5_TOOLS_H5COPY) - -#----------------------------------------------------------------------------- -# Setup include Directories -#----------------------------------------------------------------------------- -INCLUDE_DIRECTORIES (${HDF5_TOOLS_DIR}/lib) - -# -------------------------------------------------------------------- -# Add the h5copy and test executables -# -------------------------------------------------------------------- -add_executable (h5copy ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copy.c) -TARGET_NAMING (h5copy STATIC) -TARGET_C_PROPERTIES (h5copy STATIC " " " ") -target_link_libraries (h5copy ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) -set_target_properties (h5copy PROPERTIES FOLDER tools) -set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5copy") - -set (H5_DEP_EXECUTABLES h5copy) - -if (BUILD_TESTING) - if (HDF5_BUILD_GENERATORS) - add_executable (h5copygentest ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copygentest.c) - TARGET_NAMING (h5copygentest STATIC) - TARGET_C_PROPERTIES (h5copygentest STATIC " " " ") - target_link_libraries (h5copygentest ${HDF5_LIB_TARGET}) - set_target_properties (h5copygentest PROPERTIES FOLDER generator/tools) - - #add_test (NAME h5copygentest COMMAND $<TARGET_FILE:h5copygentest>) - endif (HDF5_BUILD_GENERATORS) - - include (CMakeTests.cmake) -endif (BUILD_TESTING) - -############################################################################## -############################################################################## -### I N S T A L L A T I O N ### -############################################################################## -############################################################################## - -#----------------------------------------------------------------------------- -# Rules for Installation of tools using make Install target -#----------------------------------------------------------------------------- - -#INSTALL_PROGRAM_PDB (h5copy ${HDF5_INSTALL_BIN_DIR} toolsapplications) - -install ( - TARGETS - h5copy - EXPORT - ${HDF5_EXPORTED_TARGETS} - RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT toolsapplications -) diff --git a/tools/h5copy/CMakeTests.cmake b/tools/h5copy/CMakeTests.cmake deleted file mode 100644 index a32c766..0000000 --- a/tools/h5copy/CMakeTests.cmake +++ /dev/null @@ -1,373 +0,0 @@ - -############################################################################## -############################################################################## -### T E S T I N G ### -############################################################################## -############################################################################## - - # -------------------------------------------------------------------- - # Copy all the HDF5 files from the source directory into the test directory - # -------------------------------------------------------------------- - set (LIST_HDF5_TEST_FILES - ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_extlinks_src.h5 - ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_extlinks_trg.h5 - ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_ref.h5 - ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copytst.h5 - ) - - set (LIST_OTHER_TEST_FILES - ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/testfiles/h5copy_misc1.out - ) - - file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") - - foreach (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES}) - get_filename_component(fname "${listfiles}" NAME) - HDFTEST_COPY_FILE("${listfiles}" "${PROJECT_BINARY_DIR}/testfiles/${fname}" "h5copy_files") - endforeach (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES}) - add_custom_target(h5copy_files ALL COMMENT "Copying files needed by h5copy tests" DEPENDS ${h5copy_files_list}) - -############################################################################## -############################################################################## -### T H E T E S T S M A C R O S ### -############################################################################## -############################################################################## - - # - # Perform h5copy according to passing parmeters - # - MACRO (ADD_H5_F_TEST testname resultcode infile fparam vparam sparam srcname dparam dstname) - if (NOT HDF5_ENABLE_USING_MEMCHECKER) - # Remove any output file left over from previous test run - add_test ( - NAME H5COPY_F-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${testname}.out.h5 - ) - endif (NOT HDF5_ENABLE_USING_MEMCHECKER) - - add_test ( - NAME H5COPY_F-${testname} - COMMAND $<TARGET_FILE:h5copy> -f ${fparam} -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} - ) - if (HDF5_ENABLE_USING_MEMCHECKER) - if (NOT "${last_test}" STREQUAL "") - set_tests_properties (H5COPY_F-${testname} PROPERTIES DEPENDS ${last_test}) - endif (NOT "${last_test}" STREQUAL "") - else (HDF5_ENABLE_USING_MEMCHECKER) - set_tests_properties (H5COPY_F-${testname} PROPERTIES DEPENDS H5COPY_F-${testname}-clear-objects) - endif (HDF5_ENABLE_USING_MEMCHECKER) - - # resultcode=2 will cause the test to skip the diff test - if (NOT ${resultcode} STREQUAL "2") - add_test ( - NAME H5COPY_F-${testname}-DIFF - COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname} - ) - SET_TESTS_PROPERTIES(H5COPY_F-${testname}-DIFF PROPERTIES DEPENDS H5COPY_F-${testname}) - if (${resultcode} STREQUAL "1") - set_tests_properties (H5COPY_F-${testname}-DIFF PROPERTIES WILL_FAIL "true") - endif (${resultcode} STREQUAL "1") - endif (NOT ${resultcode} STREQUAL "2") - ENDMACRO (ADD_H5_F_TEST) - - MACRO (ADD_H5_TEST testname resultcode infile vparam sparam srcname dparam dstname) - if (NOT HDF5_ENABLE_USING_MEMCHECKER) - # Remove any output file left over from previous test run - add_test ( - NAME H5COPY-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${testname}.out.h5 - ) - endif (NOT HDF5_ENABLE_USING_MEMCHECKER) - - add_test ( - NAME H5COPY-${testname} - COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} - ) - if (HDF5_ENABLE_USING_MEMCHECKER) - if (NOT "${last_test}" STREQUAL "") - set_tests_properties (H5COPY-${testname} PROPERTIES DEPENDS ${last_test}) - endif (NOT "${last_test}" STREQUAL "") - else (HDF5_ENABLE_USING_MEMCHECKER) - set_tests_properties (H5COPY-${testname} PROPERTIES DEPENDS H5COPY-${testname}-clear-objects) - endif (HDF5_ENABLE_USING_MEMCHECKER) - - # resultcode=2 will cause the test to skip the diff test - if (NOT ${resultcode} STREQUAL "2") - add_test ( - NAME H5COPY-${testname}-DIFF - COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname} - ) - SET_TESTS_PROPERTIES(H5COPY-${testname}-DIFF PROPERTIES DEPENDS H5COPY-${testname}) - if (${resultcode} STREQUAL "1") - set_tests_properties (H5COPY-${testname}-DIFF PROPERTIES WILL_FAIL "true") - endif (${resultcode} STREQUAL "1") - endif (NOT ${resultcode} STREQUAL "2") - ENDMACRO (ADD_H5_TEST) - - MACRO (ADD_H5_TEST2 testname resultcode infile psparam pdparam vparam sparam srcname dparam dstname) - if (NOT HDF5_ENABLE_USING_MEMCHECKER) - # Remove any output file left over from previous test run - add_test ( - NAME H5COPY-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${testname}.out.h5 - ) - endif (NOT HDF5_ENABLE_USING_MEMCHECKER) - - add_test ( - NAME H5COPY-${testname}-prefill - COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 -v -s ${psparam} -d ${pdparam} - ) - if (HDF5_ENABLE_USING_MEMCHECKER) - if (NOT "${last_test}" STREQUAL "") - set_tests_properties (H5COPY-${testname}-prefill PROPERTIES DEPENDS ${last_test}) - endif (NOT "${last_test}" STREQUAL "") - else (HDF5_ENABLE_USING_MEMCHECKER) - set_tests_properties (H5COPY-${testname}-prefill PROPERTIES DEPENDS H5COPY-${testname}-clear-objects) - endif (HDF5_ENABLE_USING_MEMCHECKER) - - add_test ( - NAME H5COPY-${testname} - COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} - ) - set_tests_properties (H5COPY-${testname} PROPERTIES DEPENDS H5COPY-${testname}-prefill) - # resultcode=2 will cause the test to skip the diff test - if (NOT ${resultcode} STREQUAL "2") - add_test ( - NAME H5COPY-${testname}-DIFF - COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${infile} ./testfiles/${testname}.out.h5 ${srcname} ${dstname} - ) - SET_TESTS_PROPERTIES(H5COPY-${testname}-DIFF PROPERTIES DEPENDS H5COPY-${testname}) - if (${resultcode} STREQUAL "1") - set_tests_properties (H5COPY-${testname}-DIFF PROPERTIES WILL_FAIL "true") - endif (${resultcode} STREQUAL "1") - endif (NOT ${resultcode} STREQUAL "2") - ENDMACRO (ADD_H5_TEST2) - - MACRO (ADD_H5_TEST_SAME testname resultcode pfile psparam pdparam vparam sparam srcname dparam dstname) - if (NOT HDF5_ENABLE_USING_MEMCHECKER) - # Remove any output file left over from previous test run - add_test ( - NAME H5COPY_SAME-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${testname}.out.h5 - ) - endif (NOT HDF5_ENABLE_USING_MEMCHECKER) - - add_test ( - NAME H5COPY_SAME-${testname}-prefill - COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${pfile} -o ./testfiles/${testname}.out.h5 -v -s ${psparam} -d ${pdparam} - ) - if (HDF5_ENABLE_USING_MEMCHECKER) - if (NOT "${last_test}" STREQUAL "") - set_tests_properties (H5COPY_SAME-${testname}-prefill PROPERTIES DEPENDS ${last_test}) - endif (NOT "${last_test}" STREQUAL "") - else (HDF5_ENABLE_USING_MEMCHECKER) - set_tests_properties (H5COPY_SAME-${testname}-prefill PROPERTIES DEPENDS H5COPY_SAME-${testname}-clear-objects) - endif (HDF5_ENABLE_USING_MEMCHECKER) - - add_test ( - NAME H5COPY_SAME-${testname} - COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${testname}.out.h5 -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN} - ) - set_tests_properties (H5COPY_SAME-${testname} PROPERTIES DEPENDS H5COPY_SAME-${testname}-prefill) - # resultcode=2 will cause the test to skip the diff test - if (NOT ${resultcode} STREQUAL "2") - add_test ( - NAME H5COPY_SAME-${testname}-DIFF - COMMAND $<TARGET_FILE:h5diff> -q ./testfiles/${testname}.out.h5 ./testfiles/${testname}.out.h5 ${srcname} ${dstname} - ) - SET_TESTS_PROPERTIES(H5COPY_SAME-${testname}-DIFF PROPERTIES DEPENDS H5COPY_SAME-${testname}) - if (${resultcode} STREQUAL "1") - set_tests_properties (H5COPY_SAME-${testname}-DIFF PROPERTIES WILL_FAIL "true") - endif (${resultcode} STREQUAL "1") - endif (NOT ${resultcode} STREQUAL "2") - ENDMACRO (ADD_H5_TEST_SAME) - - # - # Similiar to ADD_H5_TEST macro. Compare to outputs from source & target - # files instead of checking with h5ls. - # - MACRO (ADD_H5_CMP_TEST testname resultcode infile vparam sparam srcname dparam dstname) - # If using memchecker add tests without using scripts - if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME H5COPY-CMP-${testname} COMMAND $<TARGET_FILE:h5copy> -i ./testfiles/${infile} -o ./testfiles/${testname}.out.h5 ${vparam} ${sparam} ${srcname} ${dparam} ${dstname} ${ARGN}) - if (${resultcode} STREQUAL "1") - set_tests_properties (H5COPY-CMP-${testname} PROPERTIES WILL_FAIL "true") - endif (${resultcode} STREQUAL "1") - if (NOT "${last_test}" STREQUAL "") - set_tests_properties (H5COPY-CMP-${testname} PROPERTIES DEPENDS ${last_test}) - endif (NOT "${last_test}" STREQUAL "") - else (HDF5_ENABLE_USING_MEMCHECKER) - # Remove any output file left over from previous test run - add_test ( - NAME H5COPY-CMP-${testname}-clear-objects - COMMAND ${CMAKE_COMMAND} - -E remove - ./testfiles/${testname}.out.h5 - ) - add_test ( - NAME H5COPY-CMP-${testname} - COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5copy>" - -D "TEST_ARGS=-i;./testfiles/${infile};-o;./testfiles/${testname}.out.h5;${vparam};${sparam};${srcname};${dparam};${dstname}" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -D "TEST_OUTPUT=./testfiles/${testname}.out.out" - -D "TEST_EXPECT=${resultcode}" - -D "TEST_REFERENCE=./testfiles/${testname}.out" - -D "TEST_MASK=true" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" - ) - set_tests_properties (H5COPY-CMP-${testname} PROPERTIES DEPENDS H5COPY-CMP-${testname}-clear-objects) - endif (HDF5_ENABLE_USING_MEMCHECKER) - ENDMACRO (ADD_H5_CMP_TEST) - -############################################################################## -############################################################################## -### T H E T E S T S ### -############################################################################## -############################################################################## - - # -------------------------------------------------------------------- - # test file names - # -------------------------------------------------------------------- - set (HDF_FILE1 h5copytst) - set (HDF_FILE2 h5copy_ref) - set (HDF_EXT_SRC_FILE h5copy_extlinks_src) - set (HDF_EXT_TRG_FILE h5copy_extlinks_trg) - - if (HDF5_ENABLE_USING_MEMCHECKER) - # Remove any output file left over from previous test run - add_test ( - NAME H5COPY-clearall-objects - COMMAND ${CMAKE_COMMAND} - -E remove - simple.out.h5 - chunk.out.h5 - compact.out.h5 - compound.out.h5 - compressed.out.h5 - named_vl.out.h5 - nested_vl.out.h5 - simple_top.out.h5 - dsrename.out.h5 - grp_empty.out.h5 - grp_dsets.out.h5 - grp_nested.out.h5 - simple_group.out.h5 - grp_rename.out.h5 - grp_dsets_rename.out.h5 - A_B1_simple.out.h5 - A_B2_simple2.out.h5 - C_D_simple.out.h5 - E_F_grp_dsets.out.h5 - G_H_grp_nested.out.h5 - region_ref.out.h5 - ext_link.out.h5 - ext_link_f.out.h5 - ext_dangle_noobj.out.h5 - ext_dangle_noobj_f.out.h5 - ext_dangle_nofile.out.h5 - ext_dangle_nofile_f.out.h5 - ext_link_group.out.h5 - ext_link_group_f.out.h5 - samefile1.out.h5 - samefile2.out.h5 - h5copy_misc1.out.h5 - h5copy_misc1.out.out - h5copy_misc1.out.out.err - ) - set_tests_properties (H5COPY-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") - if (NOT "${last_test}" STREQUAL "") - set_tests_properties (H5COPY-clearall-objects PROPERTIES DEPENDS ${last_test}) - endif (NOT "${last_test}" STREQUAL "") - set (last_test "H5COPY-clearall-objects") - endif (HDF5_ENABLE_USING_MEMCHECKER) - - # "Test copying various forms of datasets" - ADD_H5_TEST (simple 0 ${HDF_FILE1}.h5 -v -s simple -d simple) - ADD_H5_TEST (chunk 0 ${HDF_FILE1}.h5 -v -s chunk -d chunk) - ADD_H5_TEST (compact 0 ${HDF_FILE1}.h5 -v -s compact -d compact) - ADD_H5_TEST (compound 0 ${HDF_FILE1}.h5 -v -s compound -d compound) - ADD_H5_TEST (compressed 0 ${HDF_FILE1}.h5 -v -s compressed -d compressed) - ADD_H5_TEST (named_vl 0 ${HDF_FILE1}.h5 -v -s named_vl -d named_vl) - ADD_H5_TEST (nested_vl 0 ${HDF_FILE1}.h5 -v -s nested_vl -d nested_vl) - - # "Test copying dataset within group in source file to root of destination" - ADD_H5_TEST (simple_top 0 ${HDF_FILE1}.h5 -v -s grp_dsets/simple -d simple_top) - - # "Test copying & renaming dataset" - ADD_H5_TEST (dsrename 0 ${HDF_FILE1}.h5 -v -s compound -d rename) - - # "Test copying empty, 'full' & 'nested' groups" - ADD_H5_TEST (grp_empty 0 ${HDF_FILE1}.h5 -v -s grp_empty -d grp_empty) - ADD_H5_TEST (grp_dsets 0 ${HDF_FILE1}.h5 -v -s grp_dsets -d grp_dsets) - ADD_H5_TEST (grp_nested 0 ${HDF_FILE1}.h5 -v -s grp_nested -d grp_nested) - - # "Test copying dataset within group in source file to group in destination" - ADD_H5_TEST2 (simple_group 0 ${HDF_FILE1}.h5 grp_dsets grp_dsets -v -s /grp_dsets/simple -d /grp_dsets/simple_group) - - # "Test copying & renaming group" - ADD_H5_TEST (grp_rename 0 ${HDF_FILE1}.h5 -v -s grp_dsets -d grp_rename) - - # "Test copying 'full' group hierarchy into group in destination file" - ADD_H5_TEST2 (grp_dsets_rename 0 ${HDF_FILE1}.h5 grp_dsets grp_rename -v -s grp_dsets -d /grp_rename/grp_dsets) - - # "Test copying objects into group hier. that doesn't exist yet in destination file" - ADD_H5_TEST (A_B1_simple 0 ${HDF_FILE1}.h5 -vp -s simple -d /A/B1/simple) - ADD_H5_TEST (A_B2_simple2 0 ${HDF_FILE1}.h5 -vp -s simple -d /A/B2/simple2) - ADD_H5_TEST (C_D_simple 0 ${HDF_FILE1}.h5 -vp -s /grp_dsets/simple -d /C/D/simple) - ADD_H5_TEST (E_F_grp_dsets 0 ${HDF_FILE1}.h5 -vp -s /grp_dsets -d /E/F/grp_dsets) - ADD_H5_TEST (G_H_grp_nested 0 ${HDF_FILE1}.h5 -vp -s /grp_nested -d /G/H/grp_nested) - -############# COPY REFERENCES ############## - - # "Test copying object and region references" - ADD_H5_F_TEST (region_ref 2 ${HDF_FILE2}.h5 ref -v -s / -d /COPY) - -############# COPY EXT LINKS ############## - - # "Test copying external link directly without -f ext" - ADD_H5_TEST (ext_link 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_dset -d /copy1_dset) - - # "Test copying external link directly with -f ext" - ADD_H5_F_TEST (ext_link_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_dset -d /copy2_dset) - - # "Test copying dangling external link (no obj) directly without -f ext" - ADD_H5_TEST (ext_dangle_noobj 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_1) - - # "Test copying dangling external link (no obj) directly with -f ext" - ADD_H5_F_TEST (ext_dangle_noobj_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2) - - # "Test copying dangling external link (no file) directly without -f ext" - ADD_H5_TEST (ext_dangle_nofile 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_1) - - # "Test copying dangling external link (no file) directly with -f ext" - ADD_H5_F_TEST (ext_dangle_nofile_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2) - - # "Test copying a group contains external links without -f ext" - ADD_H5_TEST (ext_link_group 2 ${HDF_EXT_SRC_FILE}.h5 -v -s /group_ext -d /copy1_group) - - # "Test copying a group contains external links with -f ext" - ADD_H5_F_TEST (ext_link_group_f 2 ${HDF_EXT_SRC_FILE}.h5 ext -v -s /group_ext -d /copy2_group) - -############# Test misc. ############## - - #----------------------------------------------------------------- - # "Test copying object into group which doesn't exist, without -p" - # - ADD_H5_CMP_TEST (h5copy_misc1 1 ${HDF_FILE1}.h5 -v -s /simple -d /g1/g2/simple) - - #------------------------------------------- - # "Test copying objects to the same file " - # - # - dataset - ADD_H5_TEST_SAME (samefile1 0 ${HDF_FILE1}.h5 /simple /simple -v -s /simple -d /simple_cp) - # - group with some datasets - ADD_H5_TEST_SAME (samefile2 0 ${HDF_FILE1}.h5 /grp_dsets /grp_dsets -v -s /grp_dsets -d /grp_dsets_cp) diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am deleted file mode 100644 index 9d326ce..0000000 --- a/tools/h5copy/Makefile.am +++ /dev/null @@ -1,50 +0,0 @@ -# -# Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. -# All rights reserved. -# -# This file is part of HDF5. The full HDF5 copyright notice, including -# terms governing use, modification, and redistribution, is contained in -# the files COPYING and Copyright.html. COPYING can be found at the root -# of the source code distribution tree; Copyright.html can be found at the -# root level of an installed copy of the electronic HDF5 document set and -# is linked from the top-level documents page. It can also be found at -# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have -# access to either file, you may request a copy from help@hdfgroup.org. -## -## Makefile.am -## Run automake to generate a Makefile.in from this file. -# -# HDF5 Library Makefile(.in) -# - -include $(top_srcdir)/config/commence.am - -# Include src and tools/lib directories -AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib - -# Test programs and scripts -TEST_PROG=h5copygentest -TEST_SCRIPT=testh5copy.sh - -check_SCRIPTS=$(TEST_SCRIPT) -SCRIPT_DEPEND=h5copy$(EXEEXT) - -# This is our main target, the h5copy tool -bin_PROGRAMS=h5copy -check_PROGRAMS=$(TEST_PROG) - -# Add h5copy specific linker flags here -h5copy_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) - -# source file for the test file generator -h5copygentest_SOURCES=h5copygentest.c - -# All programs depend on the hdf5 and h5tools libraries -LDADD=$(LIBH5TOOLS) $(LIBHDF5) - -# Temporary files. *.h5 are generated by h5dumpgentest. They should -# copied to the testfiles/ directory if update is required. -CHECK_CLEANFILES+=*.h5 - -include $(top_srcdir)/config/conclude.am diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c deleted file mode 100644 index 5371a21..0000000 --- a/tools/h5copy/h5copy.c +++ /dev/null @@ -1,534 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "H5private.h" -#include "h5tools.h" -#include "h5tools_utils.h" -#include <string.h> -#include <stdlib.h> - -/* Name of tool */ -#define PROGRAMNAME "h5copy" - -/* command-line options: short and long-named parameters */ -static const char *s_opts = "d:f:hi:o:ps:vVE"; -static struct long_options l_opts[] = { - { "destination", require_arg, 'd' }, - { "flag", require_arg, 'f' }, - { "help", no_arg, 'h' }, - { "input", require_arg, 'i' }, - { "output", require_arg, 'o' }, - { "parents", no_arg, 'p' }, - { "source", require_arg, 's' }, - { "verbose", no_arg, 'v' }, - { "version", no_arg, 'V' }, - { "enable-error-stack", no_arg, 'E' }, - { NULL, 0, '\0' } -}; -char *fname_src = NULL; -char *fname_dst = NULL; -char *oname_src = NULL; -char *oname_dst = NULL; -char *str_flag = NULL; - -/*------------------------------------------------------------------------- - * Function: leave - * - * Purpose: Shutdown MPI & HDF5 and call exit() - * - * Return: Does not return - * - * Programmer: Quincey Koziol - * Saturday, 31. January 2004 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void -leave(int ret) -{ - if (fname_src) - HDfree(fname_src); - if (fname_dst) - HDfree(fname_dst); - if (oname_dst) - HDfree(oname_dst); - if (oname_src) - HDfree(oname_src); - if (str_flag) - HDfree(str_flag); - - h5tools_close(); - HDexit(ret); -} - - -/*------------------------------------------------------------------------- - * Function: usage - * - * Purpose: Prints a usage message on stderr and then returns. - * - * Return: void - * - * Programmer: Pedro Vicente Nunes, 7/8/2006 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -static void -usage (void) -{ - FLUSHSTREAM(rawoutstream); - PRINTVALSTREAM(rawoutstream, "\n"); - PRINTVALSTREAM(rawoutstream, "usage: h5copy [OPTIONS] [OBJECTS...]\n"); - PRINTVALSTREAM(rawoutstream, " OBJECTS\n"); - PRINTVALSTREAM(rawoutstream, " -i, --input input file name\n"); - PRINTVALSTREAM(rawoutstream, " -o, --output output file name\n"); - PRINTVALSTREAM(rawoutstream, " -s, --source source object name\n"); - PRINTVALSTREAM(rawoutstream, " -d, --destination destination object name\n"); - PRINTVALSTREAM(rawoutstream, " OPTIONS\n"); - PRINTVALSTREAM(rawoutstream, " -h, --help Print a usage message and exit\n"); - PRINTVALSTREAM(rawoutstream, " -p, --parents No error if existing, make parent groups as needed\n"); - PRINTVALSTREAM(rawoutstream, " -v, --verbose Print information about OBJECTS and OPTIONS\n"); - PRINTVALSTREAM(rawoutstream, " -V, --version Print version number and exit\n"); - PRINTVALSTREAM(rawoutstream, " -f, --flag Flag type\n\n"); - PRINTVALSTREAM(rawoutstream, " Flag type is one of the following strings:\n\n"); - PRINTVALSTREAM(rawoutstream, " shallow Copy only immediate members for groups\n\n"); - PRINTVALSTREAM(rawoutstream, " soft Expand soft links into new objects\n\n"); - PRINTVALSTREAM(rawoutstream, " ext Expand external links into new objects\n\n"); - PRINTVALSTREAM(rawoutstream, " ref Copy references and any referenced objects, i.e., objects\n"); - PRINTVALSTREAM(rawoutstream, " that the references point to.\n"); - PRINTVALSTREAM(rawoutstream, " Referenced objects are copied in addition to the objects\n"); - PRINTVALSTREAM(rawoutstream, " specified on the command line and reference datasets are\n"); - PRINTVALSTREAM(rawoutstream, " populated with correct reference values. Copies of referenced\n"); - PRINTVALSTREAM(rawoutstream, " datasets outside the copy range specified on the command line\n"); - PRINTVALSTREAM(rawoutstream, " will normally have a different name from the original.\n"); - PRINTVALSTREAM(rawoutstream, " (Default:Without this option, reference value(s) in any\n"); - PRINTVALSTREAM(rawoutstream, " reference datasets are set to NULL and referenced objects are\n"); - PRINTVALSTREAM(rawoutstream, " not copied unless they are otherwise within the copy range\n"); - PRINTVALSTREAM(rawoutstream, " specified on the command line.)\n\n"); - PRINTVALSTREAM(rawoutstream, " noattr Copy object without copying attributes\n\n"); - PRINTVALSTREAM(rawoutstream, " allflags Switches all flags from the default to the non-default setting\n\n"); - PRINTVALSTREAM(rawoutstream, " These flag types correspond to the following API symbols\n\n"); - PRINTVALSTREAM(rawoutstream, " H5O_COPY_SHALLOW_HIERARCHY_FLAG\n"); - PRINTVALSTREAM(rawoutstream, " H5O_COPY_EXPAND_SOFT_LINK_FLAG\n"); - PRINTVALSTREAM(rawoutstream, " H5O_COPY_EXPAND_EXT_LINK_FLAG\n"); - PRINTVALSTREAM(rawoutstream, " H5O_COPY_EXPAND_REFERENCE_FLAG\n"); - PRINTVALSTREAM(rawoutstream, " H5O_COPY_WITHOUT_ATTR_FLAG\n"); - PRINTVALSTREAM(rawoutstream, " H5O_COPY_ALL\n"); -} - - - -/*------------------------------------------------------------------------- - * Function: parse_flag - * - * Purpose: read the flag -f STRING - * - * STRING is one of the following (API symbol and description) - * - * shallow H5O_COPY_SHALLOW_HIERARCHY_FLAG: Copy only immediate members for groups - * soft H5O_COPY_EXPAND_SOFT_LINK_FLAG: Expand soft links into new objects - * ext H5O_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects - * ref H5O_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references - * noattr H5O_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes - * allflags Switches all flags from the default to the non-default setting - * - * Return: Success: SUCCEED - * Failure: FAIL - * - * Programmer: Pedro Vicente Nunes, 7/8/2006 - * - * Modifications: - * - *------------------------------------------------------------------------- - */ - - -static int parse_flag(const char* s_flag, unsigned *flag) -{ - unsigned fla=0; - - if (HDstrcmp(s_flag,"shallow")==0) - { - fla = H5O_COPY_SHALLOW_HIERARCHY_FLAG; - } - else if (HDstrcmp(s_flag,"soft")==0) - { - fla = H5O_COPY_EXPAND_SOFT_LINK_FLAG; - } - else if (HDstrcmp(s_flag,"ext")==0) - { - fla = H5O_COPY_EXPAND_EXT_LINK_FLAG; - } - else if (HDstrcmp(s_flag,"ref")==0) - { - fla = H5O_COPY_EXPAND_REFERENCE_FLAG; - } - else if (HDstrcmp(s_flag,"noattr")==0) - { - fla = H5O_COPY_WITHOUT_ATTR_FLAG; - } - else if (HDstrcmp(s_flag,"allflags")==0) - { - fla = H5O_COPY_ALL; - } - else if (HDstrcmp(s_flag,"nullmsg")==0) - { - fla = H5O_COPY_PRESERVE_NULL_FLAG; - } - else - { - error_msg("Error in input flag\n"); - return -1; - } - - *flag = (*flag) | fla; - - return 0; -} - -/*------------------------------------------------------------------------- - * Function: main - * - * Purpose: main program - * - * Programmer: Pedro Vicente Nunes - * - * Modifications: - * - *------------------------------------------------------------------------- - */ - -int -main (int argc, const char *argv[]) -{ - int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */ - H5E_auto2_t func; - H5E_auto2_t tools_func; - void *edata; - void *tools_edata; - hid_t fid_src = -1; - hid_t fid_dst = -1; - unsigned flag = 0; - unsigned verbose = 0; - unsigned parents = 0; - hid_t ocpl_id = (-1); /* Object copy property list */ - hid_t lcpl_id = (-1); /* Link creation property list */ - int opt; - int li_ret; - h5tool_link_info_t linkinfo; - - h5tools_setprogname(PROGRAMNAME); - h5tools_setstatus(EXIT_SUCCESS); - - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - - /* Initialize h5tools lib */ - h5tools_init(); - - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - - /* init linkinfo struct */ - HDmemset(&linkinfo, 0, sizeof(h5tool_link_info_t)); - - /* Check for no command line parameters */ - if(argc == 1) - { - usage(); - leave(EXIT_FAILURE); - } /* end if */ - - /* parse command line options */ - while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) - { - switch ((char)opt) - { - case 'd': - oname_dst = HDstrdup(opt_arg); - break; - - case 'f': - /* validate flag */ - if (parse_flag(opt_arg,&flag)<0) - { - usage(); - leave(EXIT_FAILURE); - } - str_flag = HDstrdup(opt_arg); - break; - - case 'h': - usage(); - leave(EXIT_SUCCESS); - break; - - case 'i': - fname_src = HDstrdup(opt_arg); - break; - - case 'o': - fname_dst = HDstrdup(opt_arg); - break; - - case 'p': - parents = 1; - break; - - case 's': - oname_src = HDstrdup(opt_arg); - break; - - case 'V': - print_version(h5tools_getprogname()); - leave(EXIT_SUCCESS); - break; - - case 'v': - verbose = 1; - break; - - case 'E': - enable_error_stack = TRUE; - break; - - default: - usage(); - leave(EXIT_FAILURE); - } - } /* end of while */ - -/*------------------------------------------------------------------------- - * check for missing file/object names - *-------------------------------------------------------------------------*/ - - if (fname_src==NULL) - { - error_msg("Input file name missing\n"); - usage(); - leave(EXIT_FAILURE); - } - - if (fname_dst==NULL) - { - error_msg("Output file name missing\n"); - usage(); - leave(EXIT_FAILURE); - } - - if (oname_src==NULL) - { - error_msg("Source object name missing\n"); - usage(); - leave(EXIT_FAILURE); - } - - if (oname_dst==NULL) - { - error_msg("Destination object name missing\n"); - usage(); - leave(EXIT_FAILURE); - } - - if (enable_error_stack) { - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - } - - /*------------------------------------------------------------------------- - * open output file - *-------------------------------------------------------------------------*/ - - /* Attempt to open an existing HDF5 file first. Need to open the dst file - before the src file just in case that the dst and src are the same file - */ - fid_dst = h5tools_fopen(fname_dst, H5F_ACC_RDWR, H5P_DEFAULT, NULL, NULL, 0); - - /*------------------------------------------------------------------------- - * open input file - *-------------------------------------------------------------------------*/ - - fid_src = h5tools_fopen(fname_src, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0); - - /*------------------------------------------------------------------------- - * test for error in opening input file - *-------------------------------------------------------------------------*/ - if (fid_src==-1) - { - error_msg("Could not open input file <%s>...Exiting\n", fname_src); - leave(EXIT_FAILURE); - } - - - /*------------------------------------------------------------------------- - * create an output file when failed to open it - *-------------------------------------------------------------------------*/ - - /* If we couldn't open an existing file, try creating file */ - /* (use "EXCL" instead of "TRUNC", so we don't blow away existing non-HDF5 file) */ - if(fid_dst < 0) - fid_dst = H5Fcreate(fname_dst, H5F_ACC_EXCL, H5P_DEFAULT, H5P_DEFAULT); - - /*------------------------------------------------------------------------- - * test for error in opening output file - *-------------------------------------------------------------------------*/ - if (fid_dst==-1) - { - error_msg("Could not open output file <%s>...Exiting\n", fname_dst); - leave(EXIT_FAILURE); - } - - /*------------------------------------------------------------------------- - * print some info - *-------------------------------------------------------------------------*/ - - if (verbose) - { - printf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n", - fname_src, oname_src, fname_dst, oname_dst); - if (flag) { - HDassert(str_flag); - printf("Using %s flag\n", str_flag); - } - } - - - /*------------------------------------------------------------------------- - * create property lists for copy - *-------------------------------------------------------------------------*/ - - /* create property to pass copy options */ - if ( (ocpl_id = H5Pcreate(H5P_OBJECT_COPY)) < 0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pcreate failed"); - - /* set options for object copy */ - if (flag) - { - if ( H5Pset_copy_object(ocpl_id, flag) < 0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pset_copy_object failed"); - } - - /* Create link creation property list */ - if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) { - error_msg("Could not create link creation property list\n"); - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pcreate failed"); - } /* end if */ - - /* Check for creating intermediate groups */ - if(parents) { - /* Set the intermediate group creation property */ - if(H5Pset_create_intermediate_group(lcpl_id, 1) < 0) { - error_msg("Could not set property for creating parent groups\n"); - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pset_create_intermediate_group failed"); - } /* end if */ - - /* Display some output if requested */ - if(verbose) - printf("%s: Creating parent groups\n", h5tools_getprogname()); - } /* end if */ - else /* error, if parent groups doesn't already exist in destination file */ - { - size_t i, len; - - len = HDstrlen(oname_dst); - - /* check if all the parents groups exist. skip root group */ - for (i = 1; i < len; i++) - { - if ('/'==oname_dst[i]) - { - char *str_ptr; - - str_ptr = (char *)HDcalloc(i + 1, sizeof(char)); - HDstrncpy(str_ptr, oname_dst, i); - str_ptr[i]='\0'; - if (H5Lexists(fid_dst, str_ptr, H5P_DEFAULT) <= 0) - { - error_msg("group <%s> doesn't exist. Use -p to create parent groups.\n", str_ptr); - HDfree(str_ptr); - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Lexists failed"); - } - HDfree(str_ptr); - } - } - } - - /*------------------------------------------------------------------------- - * do the copy - *-------------------------------------------------------------------------*/ - - if(verbose) - linkinfo.opt.msg_mode = 1; - - li_ret = H5tools_get_symlink_info(fid_src, oname_src, &linkinfo, 1); - if (li_ret == 0) /* dangling link */ - { - if(H5Lcopy(fid_src, oname_src, - fid_dst, oname_dst, - H5P_DEFAULT, H5P_DEFAULT) < 0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Lcopy failed"); - } - else /* valid link */ - { - if (H5Ocopy(fid_src, /* Source file or group identifier */ - oname_src, /* Name of the source object to be copied */ - fid_dst, /* Destination file or group identifier */ - oname_dst, /* Name of the destination object */ - ocpl_id, /* Object copy property list */ - lcpl_id)<0) /* Link creation property list */ - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Ocopy failed"); - } - - /* free link info path */ - if (linkinfo.trg_path) - HDfree(linkinfo.trg_path); - - /* close propertis */ - if(H5Pclose(ocpl_id)<0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pclose failed"); - if(H5Pclose(lcpl_id)<0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Pclose failed"); - - /* close files */ - if (H5Fclose(fid_src)<0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Fclose failed"); - if (H5Fclose(fid_dst)<0) - HGOTO_ERROR(EXIT_FAILURE, H5E_tools_min_id_g, "H5Fclose failed"); - - leave(EXIT_SUCCESS); - -done: - printf("Error in copy...Exiting\n"); - - /* free link info path */ - if (linkinfo.trg_path) - HDfree(linkinfo.trg_path); - - H5E_BEGIN_TRY { - H5Pclose(ocpl_id); - H5Pclose(lcpl_id); - H5Fclose(fid_src); - H5Fclose(fid_dst); - } H5E_END_TRY; - - leave(ret_value); -} - diff --git a/tools/h5copy/h5copygentest.c b/tools/h5copy/h5copygentest.c deleted file mode 100644 index 7669702..0000000 --- a/tools/h5copy/h5copygentest.c +++ /dev/null @@ -1,1004 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -/* - * Generate the binary hdf5 file for the h5copy tests - */ -#include <stdlib.h> -#include "hdf5.h" -#include "H5private.h" - -/* HDF file names */ -#define HDF_FILE1 "h5copytst.h5" -#define HDF_FILE1_NEW "h5copytst_new.h5" -#define HDF_FILE2 "h5copy_ref.h5" -#define HDF_EXT_SRC_FILE "h5copy_extlinks_src.h5" -#define HDF_EXT_TRG_FILE "h5copy_extlinks_trg.h5" - -/* objects in HDF_FILE1 */ -#define DATASET_SIMPLE "simple" -#define DATASET_CHUNK "chunk" -#define DATASET_COMPACT "compact" -#define DATASET_COMPOUND "compound" -#define DATASET_COMPRESSED "compressed" -#define DATASET_NAMED_VL "named_vl" -#define DATASET_NESTED_VL "nested_vl" -#define DATASET_ATTR "dset_attr" -#define ATTR "attr" -#define GROUP_EMPTY "grp_empty" -#define GROUP_DATASETS "grp_dsets" -#define GROUP_NESTED "grp_nested" -#define GROUP_ATTR "grp_attr" - -/* Obj reference */ -#define OBJ_REF_DS "Dset1" -#define OBJ_REF_GRP "Group" -/* Region reference */ -#define REG_REF_DS1 "Dset_REGREF" -#define REG_REF_DS2 "Dset2" - - -/*------------------------------------------------------------------------- - * Function: gent_simple - * - * Purpose: Generate a simple dataset in LOC_ID - * - *------------------------------------------------------------------------- - */ -static void gent_simple(hid_t loc_id) -{ - hid_t sid, did; - hsize_t dims[1] = {6}; - int buf[6] = {1,2,3,4,5,6}; - - /* create dataspace */ - sid = H5Screate_simple(1, dims, NULL); - - /* create dataset */ - did = H5Dcreate2(loc_id, DATASET_SIMPLE, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* write */ - H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - - /* close */ - H5Sclose(sid); - H5Dclose(did); -} - -/*------------------------------------------------------------------------- - * Function: gent_chunked - * - * Purpose: Generate a chunked dataset in LOC_ID - * - *------------------------------------------------------------------------- - */ -static void gent_chunked(hid_t loc_id) -{ - hid_t sid, did, pid; - hsize_t dims[1] = {6}; - hsize_t chunk_dims[1] = {2}; - int buf[6] = {1,2,3,4,5,6}; - - /* create dataspace */ - sid = H5Screate_simple(1, dims, NULL); - - /* create property plist */ - pid = H5Pcreate(H5P_DATASET_CREATE); - H5Pset_chunk(pid, 1, chunk_dims); - - /* create dataset */ - did = H5Dcreate2(loc_id, DATASET_CHUNK, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT); - - /* write */ - H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - - /* close */ - H5Sclose(sid); - H5Dclose(did); - H5Pclose(pid); -} - - -/*------------------------------------------------------------------------- - * Function: gent_compact - * - * Purpose: Generate a compact dataset in LOC_ID - * - *------------------------------------------------------------------------- - */ -static void gent_compact(hid_t loc_id) -{ - hid_t sid, did, pid; - hsize_t dims[1] = {6}; - int buf[6] = {1,2,3,4,5,6}; - - /* create dataspace */ - sid = H5Screate_simple(1, dims, NULL); - - /* create property plist */ - pid = H5Pcreate(H5P_DATASET_CREATE); - H5Pset_layout (pid,H5D_COMPACT); - - /* create dataset */ - did = H5Dcreate2(loc_id, DATASET_COMPACT, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT); - - /* write */ - H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - - /* close */ - H5Sclose(sid); - H5Dclose(did); - H5Pclose(pid); -} - - -/*------------------------------------------------------------------------- - * Function: gent_compound - * - * Purpose: Generate a compound dataset in LOC_ID - * - *------------------------------------------------------------------------- - */ -static void gent_compound(hid_t loc_id) -{ - typedef struct s_t - { - char str1[20]; - char str2[20]; - } s_t; - hid_t sid, did, tid_c, tid_s; - hsize_t dims[1] = {2}; - s_t buf[2] = {{"str1", "str2"}, {"str3", "str4"}}; - - /* create dataspace */ - sid = H5Screate_simple(1, dims, NULL); - - /* create a compound type */ - tid_c = H5Tcreate(H5T_COMPOUND, sizeof(s_t)); - tid_s = H5Tcopy(H5T_C_S1); - H5Tset_size(tid_s, 20); - - H5Tinsert(tid_c, "str1", HOFFSET(s_t,str1), tid_s); - H5Tinsert(tid_c, "str2", HOFFSET(s_t,str2), tid_s); - - /* create dataset */ - did = H5Dcreate2(loc_id, DATASET_COMPOUND, tid_c, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* write */ - H5Dwrite(did, tid_c, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - - /* close */ - H5Sclose(sid); - H5Dclose(did); - H5Tclose(tid_c); - H5Tclose(tid_s); -} - -/*------------------------------------------------------------------------- - * Function: gent_compressed - * - * Purpose: Generate a compressed dataset in LOC_ID - * - *------------------------------------------------------------------------- - */ -static void gent_compressed(hid_t loc_id) -{ - hid_t sid, did, pid; - hsize_t dims[1] = {6}; - hsize_t chunk_dims[1] = {2}; - int buf[6] = {1,2,3,4,5,6}; - - /* create dataspace */ - sid = H5Screate_simple(1, dims, NULL); - - /* create property plist for chunk*/ - pid = H5Pcreate(H5P_DATASET_CREATE); - H5Pset_chunk(pid, 1, chunk_dims); - - /* set the deflate filter */ -#if defined (H5_HAVE_FILTER_DEFLATE) - H5Pset_deflate(pid, 1); -#endif - - /* create dataset */ - did = H5Dcreate2(loc_id, DATASET_COMPRESSED, H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT); - - /* write */ - H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - - /* close */ - H5Sclose(sid); - H5Dclose(did); - H5Pclose(pid); -} - - -/*------------------------------------------------------------------------- - * Function: gent_named_vl - * - * Purpose: Generate a variable lenght named datatype for a dataset in - LOC_ID - * - *------------------------------------------------------------------------- - */ -static void gent_named_vl(hid_t loc_id) -{ - hid_t sid, did, tid; - hsize_t dims[1] = {2}; - hvl_t buf[2]; - - /* allocate and initialize VL dataset to write */ - buf[0].len = 1; - buf[0].p = HDmalloc( 1 * sizeof(int)); - ((int *)buf[0].p)[0]=1; - buf[1].len = 2; - buf[1].p = HDmalloc( 2 * sizeof(int)); - ((int *)buf[1].p)[0]=2; - ((int *)buf[1].p)[1]=3; - - /* create dataspace */ - sid = H5Screate_simple(1, dims, NULL); - - /* create datatype */ - tid = H5Tvlen_create(H5T_NATIVE_INT); - - /* create named datatype */ - H5Tcommit2(loc_id, "vl", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* create dataset */ - did = H5Dcreate2(loc_id, DATASET_NAMED_VL, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* write */ - H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - - /* close */ - H5Dvlen_reclaim(tid,sid,H5P_DEFAULT,buf); - H5Sclose(sid); - H5Dclose(did); - H5Tclose(tid); -} - - -/*------------------------------------------------------------------------- - * Function: gent_nested_vl - * - * Purpose: Generate a nested variable length dataset in LOC_ID - * - *------------------------------------------------------------------------- - */ -static void gent_nested_vl(hid_t loc_id) -{ - hid_t sid, did, tid1, tid2; - hsize_t dims[1] = {2}; - hvl_t buf[2]; - hvl_t *tvl; - - /* allocate and initialize VL dataset to write */ - buf[0].len = 1; - buf[0].p = HDmalloc( 1 * sizeof(hvl_t)); - tvl = (hvl_t *)buf[0].p; - tvl->p = HDmalloc( 1 * sizeof(int) ); - tvl->len = 1; - ((int *)tvl->p)[0]=1; - - buf[1].len = 1; - buf[1].p = HDmalloc( 1 * sizeof(hvl_t)); - tvl = (hvl_t *)buf[1].p; - tvl->p = HDmalloc( 2 * sizeof(int) ); - tvl->len = 2; - ((int *)tvl->p)[0]=2; - ((int *)tvl->p)[1]=3; - - /* create dataspace */ - sid = H5Screate_simple(1, dims, NULL); - - /* create datatype */ - tid1 = H5Tvlen_create(H5T_NATIVE_INT); - - /* create nested VL datatype */ - tid2 = H5Tvlen_create(tid1); - - /* create dataset */ - did = H5Dcreate2(loc_id, DATASET_NESTED_VL, tid2, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* write */ - H5Dwrite(did, tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - - /* close */ - H5Dvlen_reclaim(tid2,sid,H5P_DEFAULT,buf); - H5Sclose(sid); - H5Dclose(did); - H5Tclose(tid1); - H5Tclose(tid2); -} - - -/*------------------------------------------------------------------------- - * Function: gent_att_compound_vlstr - * - * Purpose: Generate a dataset and a group. - * Both has an attribute with a compound datatype consisting - * of a variable length string - * - *------------------------------------------------------------------------- - */ -static void gent_att_compound_vlstr(hid_t loc_id) -{ - typedef struct { /* Compound structure for the attribute */ - int i; - char *v; - } s1; - hsize_t dim[1] = {1}; /* Dimension size */ - hid_t sid = -1; /* Dataspace ID */ - hid_t tid = -1; /* Datatype ID */ - hid_t aid = -1; /* Attribute ID */ - hid_t did = -1; /* Dataset ID */ - hid_t gid = -1; /* Group ID */ - hid_t vl_str_tid = -1; /* Variable length datatype ID */ - hid_t cmpd_tid = -1; /* Compound datatype ID */ - hid_t null_sid = -1; /* Null dataspace ID */ - s1 buf; /* Buffer */ - - buf.i = 9; - buf.v = "ThisIsAString"; - - /* Create an integer datatype */ - tid = H5Tcopy(H5T_NATIVE_INT); - - /* Create a variable length string */ - vl_str_tid = H5Tcopy(H5T_C_S1); - H5Tset_size(vl_str_tid, H5T_VARIABLE); - - /* Create a compound datatype with a variable length string and an integer */ - cmpd_tid = H5Tcreate(H5T_COMPOUND, sizeof(s1)); - H5Tinsert(cmpd_tid, "i", HOFFSET(s1, i), tid); - H5Tinsert(cmpd_tid, "v", HOFFSET(s1, v), vl_str_tid); - - /* Create a dataset */ - null_sid = H5Screate(H5S_NULL); - did = H5Dcreate2(loc_id, DATASET_ATTR, H5T_NATIVE_INT, null_sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* Attach an attribute with the compound datatype to the dataset */ - sid = H5Screate_simple(1, dim, dim); - aid = H5Acreate2(did, ATTR, cmpd_tid, sid, H5P_DEFAULT, H5P_DEFAULT); - - /* Write the attribute */ - buf.i = 9; - buf.v = "ThisIsAString"; - H5Awrite(aid, cmpd_tid, &buf); - - /* Close the dataset and its attribute */ - H5Dclose(did); - H5Aclose(aid); - - /* Create a group */ - gid = H5Gcreate2(loc_id, GROUP_ATTR, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* Attach an attribute with the compound datatype to the group */ - aid = H5Acreate2(gid, ATTR, cmpd_tid, sid, H5P_DEFAULT, H5P_DEFAULT); - H5Awrite(aid, cmpd_tid, &buf); - - /* Close the group and its attribute */ - H5Aclose(aid); - H5Gclose(gid); - - /* Close dataspaces */ - H5Sclose(sid); - H5Sclose(null_sid); - - /* Close datatypes */ - H5Tclose(tid); - H5Tclose(vl_str_tid); - H5Tclose(cmpd_tid); - -} /* gen_att_compound_vlstr() */ - -/*------------------------------------------------------------------------- - * Function: gent_datasets - * - * Purpose: Generate all datasets in a particular location - * - *------------------------------------------------------------------------- - */ -static void gent_datasets(hid_t loc_id) -{ - gent_simple(loc_id); - gent_chunked(loc_id); - gent_compact(loc_id); - gent_compound(loc_id); - gent_compressed(loc_id); - gent_named_vl(loc_id); - gent_nested_vl(loc_id); -} - -/*------------------------------------------------------------------------- - * Function: gent_empty_group - * - * Purpose: Generate an empty group in a location - * - *------------------------------------------------------------------------- - */ -static void gent_empty_group(hid_t loc_id) -{ - hid_t gid; - - /* Create group in location */ - gid = H5Gcreate2(loc_id, GROUP_EMPTY, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* Release resources */ - H5Gclose(gid); -} - -/*------------------------------------------------------------------------- - * Function: gent_nested_datasets - * - * Purpose: Generate a group in a location and populate it with the "standard" - * datasets - * - *------------------------------------------------------------------------- - */ -static void gent_nested_datasets(hid_t loc_id) -{ - hid_t gid; - - /* Create group in location */ - gid = H5Gcreate2(loc_id, GROUP_DATASETS, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* Add datasets to group created */ - gent_datasets(gid); - - /* Release resources */ - H5Gclose(gid); -} - -/*------------------------------------------------------------------------- - * Function: gent_nested_group - * - * Purpose: Generate a group in a location and populate it with another group - * containing the "standard" datasets - * - *------------------------------------------------------------------------- - */ -static void gent_nested_group(hid_t loc_id) -{ - hid_t gid; - - /* Create group in location */ - gid = H5Gcreate2(loc_id, GROUP_NESTED, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - - /* Add datasets to group created */ - gent_nested_datasets(gid); - - /* Release resources */ - H5Gclose(gid); -} - - -/*------------------------------------------------------------------------- - * Function: gen_obj_ref - * - * Purpose: Generate object references to dataset and group - * - * Programmer: Jonathan Kim (Feb 23, 2010) - *------------------------------------------------------------------------*/ -static herr_t gen_obj_ref(hid_t loc_id) -{ - hid_t sid=0, oid=0; - hsize_t dims1[1]={3}; - hsize_t dims2[1]={2}; - int data[3] = {10,20,30}; - int status; - - /*--------------------- - * create obj references to the previously created objects. - * Passing -1 as reference is an object.*/ - hobj_ref_t or_data[2]; /* write buffer */ - herr_t ret = SUCCEED; - - /*-------------- - * add dataset */ - sid = H5Screate_simple(1, dims1, NULL); - if (sid < 0) - { - fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - oid = H5Dcreate2 (loc_id, OBJ_REF_DS, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (oid < 0) - { - fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - status = H5Dwrite(oid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - H5Dclose(oid); - H5Sclose(sid); - - /*-------------- - * add group */ - oid = H5Gcreate2 (loc_id, OBJ_REF_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (oid < 0) - { - fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - H5Gclose(oid); - - status = H5Rcreate (&or_data[0], loc_id, OBJ_REF_DS, H5R_OBJECT, (hid_t)-1); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - status = H5Rcreate (&or_data[1], loc_id, OBJ_REF_GRP, H5R_OBJECT, (hid_t)-1); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - sid = H5Screate_simple (1, dims2, NULL); - if (sid < 0) - { - fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); - if (oid < 0) - { - fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, or_data); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - -out: - if(oid > 0) - H5Dclose(oid); - if(sid > 0) - H5Sclose(sid); - - return ret; -} - - -/*------------------------------------------------------------------------- - * Function: gen_region_ref - * - * Purpose: Generate dataset region references - * - * Programmer: Jonathan Kim (Feb 23, 2010) - *------------------------------------------------------------------------*/ -static herr_t gen_region_ref(hid_t loc_id) -{ - hid_t sid=0, oid1=0, oid2=0; - int status; - herr_t ret = SUCCEED; - char data[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"}; - hsize_t dims2[2] = {3,16}; - hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} }; - hdset_reg_ref_t rr_data[2]; - hsize_t start[2] = {0,0}; - hsize_t stride[2] = {2,11}; - hsize_t count[2] = {2,2}; - hsize_t block[2] = {1,3}; - hsize_t dims1[1] = {2}; - - sid = H5Screate_simple (2, dims2, NULL); - if (sid < 0) - { - fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* create normal dataset which is refered */ - oid2 = H5Dcreate2 (loc_id, REG_REF_DS2, H5T_STD_I8LE, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); - if (oid2 < 0) - { - fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* write values to dataset */ - status = H5Dwrite (oid2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* select elements space for reference */ - status = H5Sselect_elements (sid, H5S_SELECT_SET, 4, coords[0]); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* create region reference from elements space */ - status = H5Rcreate (&rr_data[0], loc_id, REG_REF_DS2, H5R_DATASET_REGION, sid); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* select hyperslab space for reference */ - status = H5Sselect_hyperslab (sid, H5S_SELECT_SET, start, stride, count, block); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* create region reference from hyperslab space */ - status = H5Rcreate (&rr_data[1], loc_id, REG_REF_DS2, H5R_DATASET_REGION, sid); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - H5Sclose (sid); - - /* Create dataspace. */ - sid = H5Screate_simple (1, dims1, NULL); - if (sid < 0) - { - fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* create region reference dataset */ - oid1 = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); - if (oid1 < 0) - { - fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* write data as region references */ - status = H5Dwrite (oid1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - -out: - if (oid1 > 0) - H5Dclose (oid1); - if (oid2 > 0) - H5Dclose (oid2); - if (sid > 0) - H5Sclose (sid); - - return ret; -} - -/*------------------------------------------------------------------------- - * Function: Test_Obj_Copy - * - * Purpose: Testing with various objects - * - *------------------------------------------------------------------------*/ -static void Test_Obj_Copy(void) -{ - hid_t fid = -1; /* File id */ - hid_t fapl_new = (-1); /* File access property id */ - unsigned new_format; /* New format or old format */ - - if((fapl_new = H5Pcreate(H5P_FILE_ACCESS)) < 0) { - fprintf(stderr, "Error: H5Pcreate failed.\n"); - goto out; - } - if(H5Pset_libver_bounds(fapl_new, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) { - fprintf(stderr, "Error: H5Pset_libver_bounds failed.\n"); - goto out; - } - - /* Test with old & new format groups */ - for(new_format = FALSE; new_format <= TRUE; new_format++) { - - /* Set the FAPL for the type of format */ - /* Create source file */ - if(new_format) - fid = H5Fcreate(HDF_FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_new); - else - fid = H5Fcreate(HDF_FILE1_NEW, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if(fid < 0) { - fprintf(stderr, "Error: H5Fcreate failed.\n"); - goto out; - } - - gent_datasets(fid); - gent_empty_group(fid); - gent_nested_datasets(fid); - gent_nested_group(fid); - gent_att_compound_vlstr(fid); - - H5Fclose(fid); - fid = (-1); - } /* end for */ - -out: - /*----------------------------------------------------------------------- - * Close - *------------------------------------------------------------------------*/ - if(fid > 0) - H5Fclose(fid); - if(fapl_new > 0) - H5Pclose(fapl_new); -} - -/*------------------------------------------------------------------------- - * Function: Test_Ref_Copy - * - * Purpose: Testing with various references - * - *------------------------------------------------------------------------*/ -static void Test_Ref_Copy(void) -{ - hid_t fid=0; - herr_t status; - - fid = H5Fcreate (HDF_FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid < 0) - { - fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_FILE2); - goto out; - } - - /* add object reference */ - status = gen_obj_ref(fid); - if (status < 0) - fprintf(stderr, "Failed to generate object reference.\n"); - - /* add region reference */ - status = gen_region_ref(fid); - if (status < 0) - fprintf(stderr, "Failed to generate region reference.\n"); - -out: - /*----------------------------------------------------------------------- - * Close - *------------------------------------------------------------------------*/ - if(fid > 0) - H5Fclose(fid); -} - -/*------------------------------------------------------------------------- - * Function: gen_extlink_trg - * - * Purpose: generate target external link objs - * - * Programmer: Jonathan Kim (March 03, 2010) - *------------------------------------------------------------------------*/ -static herr_t gen_extlink_trg(hid_t loc_id) -{ - hid_t gid=0, tid=0; - int status; - herr_t ret = SUCCEED; - - /*----------------------------------------------------------------------- - * Groups - *------------------------------------------------------------------------*/ - /*-------------- - * target file */ - gid = H5Gcreate2(loc_id, "group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid < 0) - { - fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /*-------------- - * add dataset */ - gent_simple(loc_id); - - /*-------------------- - * add named datatype - */ - tid = H5Tcopy(H5T_NATIVE_INT); - status = H5Tcommit2(loc_id, "datatype", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - -out: - if(gid > 0) - H5Gclose(gid); - if(tid > 0) - H5Tclose(tid); - - return ret; -} - -/*------------------------------------------------------------------------- - * Function: gen_extlink_src - * - * Purpose: generate source external link objs - * - * Programmer: Jonathan Kim (March 03, 2010) - *------------------------------------------------------------------------*/ -static herr_t gen_extlink_src(hid_t loc_id) -{ - hid_t gid=0; - int status; - herr_t ret = SUCCEED; - - /*----------------------------------------------------------------------- - * Groups - *------------------------------------------------------------------------*/ - gid = H5Gcreate2(loc_id, "/group_ext", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid < 0) - { - fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /*----------------------------------------------------------------------- - * External links - *------------------------------------------------------------------------*/ - /* link to dataset */ - status = H5Lcreate_external(HDF_EXT_TRG_FILE, "/simple", gid, "extlink_dset", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* link to group */ - status = H5Lcreate_external(HDF_EXT_TRG_FILE, "/group", gid, "extlink_grp", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* link to datatype */ - status = H5Lcreate_external(HDF_EXT_TRG_FILE, "/datatype", gid, "extlink_datatype", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* dangling link - no obj*/ - status = H5Lcreate_external(HDF_EXT_TRG_FILE, "notyet", gid, "extlink_notyet1", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - - /* dangling link - no file */ - status = H5Lcreate_external("notyet_file.h5", "notyet", gid, "extlink_notyet2", H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { - fprintf(stderr, "Error: %s %d> H5Lcreate_external failed.\n", FUNC, __LINE__); - ret = FAIL; - goto out; - } - -out: - if(gid > 0) - H5Gclose(gid); - - return ret; -} - -/*------------------------------------------------------------------------- - * Function: Test_Extlink_Copy - * - * Purpose: gerenate external link files - * - *------------------------------------------------------------------------*/ -static void Test_Extlink_Copy(void) -{ - hid_t fid1=0; - hid_t fid2=0; - herr_t status; - - fid1 = H5Fcreate (HDF_EXT_SRC_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid1 < 0) - { - fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_EXT_SRC_FILE); - goto out; - } - - fid2 = H5Fcreate (HDF_EXT_TRG_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid2 < 0) - { - fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_EXT_TRG_FILE); - goto out; - } - - /* add links to source external link file */ - status = gen_extlink_src(fid1); - if (status < 0) - fprintf(stderr, "Error: %s> gen_extlink_src failed.\n", HDF_EXT_SRC_FILE); - - /* add objs to target external link file */ - status = gen_extlink_trg(fid2); - if (status < 0) - fprintf(stderr, "Error: %s> gen_extlink_trg failed.\n", HDF_EXT_TRG_FILE); - -out: - /*----------------------------------------------------------------------- - * Close - *------------------------------------------------------------------------*/ - if(fid1 > 0) - H5Fclose(fid1); - if(fid2 > 0) - H5Fclose(fid2); -} - -/*------------------------------------------------------------------------- - * Function: main - * - *------------------------------------------------------------------------- - */ - -int main(void) -{ - Test_Obj_Copy(); - Test_Ref_Copy(); - Test_Extlink_Copy(); - - return 0; -} - diff --git a/tools/h5copy/testfiles/h5copy_extlinks_src.h5 b/tools/h5copy/testfiles/h5copy_extlinks_src.h5 Binary files differdeleted file mode 100644 index 7b8621e..0000000 --- a/tools/h5copy/testfiles/h5copy_extlinks_src.h5 +++ /dev/null diff --git a/tools/h5copy/testfiles/h5copy_extlinks_src.out.ls b/tools/h5copy/testfiles/h5copy_extlinks_src.out.ls deleted file mode 100644 index 0134714..0000000 --- a/tools/h5copy/testfiles/h5copy_extlinks_src.out.ls +++ /dev/null @@ -1,43 +0,0 @@ -Opened "./testfiles/h5copy_extlinks_src.out.h5" with sec2 driver. -/ Group - Location: 1:96 - Links: 1 -/copy1_dset Dataset {6/6} - Location: 1:800 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/copy1_group Group - Location: 1:4696 - Links: 1 -/copy1_group/extlink_datatype External Link {h5copy_extlinks_trg.h5//datatype} -/copy1_group/extlink_dset External Link {h5copy_extlinks_trg.h5//simple} -/copy1_group/extlink_grp External Link {h5copy_extlinks_trg.h5//group} -/copy1_group/extlink_notyet1 External Link {h5copy_extlinks_trg.h5//notyet} -/copy1_group/extlink_notyet2 External Link {notyet_file.h5//notyet} -/copy2_dset Dataset {6/6} - Location: 1:4216 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/copy2_group Group - Location: 1:5128 - Links: 1 -/copy2_group/extlink_datatype Type - Location: 1:6328 - Links: 1 - Type: shared-1:6328 32-bit little-endian integer -/copy2_group/extlink_dset Dataset {6/6} - Location: 1:5496 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/copy2_group/extlink_grp Group - Location: 1:6288 - Links: 1 -/copy2_group/extlink_notyet1 External Link {h5copy_extlinks_trg.h5//notyet} -/copy2_group/extlink_notyet2 External Link {notyet_file.h5//notyet} -/copy_dangle1_1 External Link {h5copy_extlinks_trg.h5//notyet} -/copy_dangle1_2 External Link {h5copy_extlinks_trg.h5//notyet} -/copy_dangle2_1 External Link {notyet_file.h5//notyet} -/copy_dangle2_2 External Link {notyet_file.h5//notyet} diff --git a/tools/h5copy/testfiles/h5copy_extlinks_trg.h5 b/tools/h5copy/testfiles/h5copy_extlinks_trg.h5 Binary files differdeleted file mode 100644 index 3a0242d..0000000 --- a/tools/h5copy/testfiles/h5copy_extlinks_trg.h5 +++ /dev/null diff --git a/tools/h5copy/testfiles/h5copy_misc1.out b/tools/h5copy/testfiles/h5copy_misc1.out deleted file mode 100644 index 1624f2b..0000000 --- a/tools/h5copy/testfiles/h5copy_misc1.out +++ /dev/null @@ -1,3 +0,0 @@ -Copying file <./testfiles/h5copytst.h5> and object </simple> to file <./testfiles/h5copy_misc1.out.h5> and object </g1/g2/simple> -Error in copy...Exiting -h5copy error: group </g1> doesn't exist. Use -p to create parent groups. diff --git a/tools/h5copy/testfiles/h5copy_ref.h5 b/tools/h5copy/testfiles/h5copy_ref.h5 Binary files differdeleted file mode 100644 index bd727e6..0000000 --- a/tools/h5copy/testfiles/h5copy_ref.h5 +++ /dev/null diff --git a/tools/h5copy/testfiles/h5copy_ref.out.ls b/tools/h5copy/testfiles/h5copy_ref.out.ls deleted file mode 100644 index d685af2..0000000 --- a/tools/h5copy/testfiles/h5copy_ref.out.ls +++ /dev/null @@ -1,31 +0,0 @@ -Opened "./testfiles/h5copy_ref.out.h5" with sec2 driver. -/ Group - Location: 1:96 - Links: 1 -/COPY Group - Location: 1:1464 - Links: 1 -/COPY/Dset1 Dataset {3/3} - Location: 1:1504 - Links: 2 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/COPY/Dset2 Dataset {3/3, 16/16} - Location: 1:1960 - Links: 3 - Storage: <details removed for portability> - Type: 8-bit integer -/COPY/Dset_OBJREF Dataset {2/2} - Location: 1:5184 - Links: 1 - Storage: <details removed for portability> - Type: object reference -/COPY/Dset_REGREF Dataset {2/2} - Location: 1:5304 - Links: 1 - Storage: <details removed for portability> - Type: dataset region reference -/COPY/Group Group - Location: 1:2096 - Links: 3 -/~obj_pointed_by_2096 Group, same as /COPY/Group diff --git a/tools/h5copy/testfiles/h5copytst.h5 b/tools/h5copy/testfiles/h5copytst.h5 Binary files differdeleted file mode 100644 index 1d1cbf1..0000000 --- a/tools/h5copy/testfiles/h5copytst.h5 +++ /dev/null diff --git a/tools/h5copy/testfiles/h5copytst.out.ls b/tools/h5copy/testfiles/h5copytst.out.ls deleted file mode 100644 index 4044aaf..0000000 --- a/tools/h5copy/testfiles/h5copytst.out.ls +++ /dev/null @@ -1,429 +0,0 @@ -Opened "./testfiles/h5copytst.out.h5" with sec2 driver. -/ Group - Location: 1:96 - Links: 1 -/A Group - Location: 1:84304 - Links: 1 -/A/B1 Group - Location: 1:85008 - Links: 1 -/A/B1/simple Dataset {6/6} - Location: 1:84176 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/A/B2 Group - Location: 1:88544 - Links: 1 -/A/B2/simple2 Dataset {6/6} - Location: 1:88416 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/C Group - Location: 1:91752 - Links: 1 -/C/D Group - Location: 1:92456 - Links: 1 -/C/D/simple Dataset {6/6} - Location: 1:91624 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/E Group - Location: 1:106368 - Links: 1 -/E/F Group - Location: 1:107072 - Links: 1 -/E/F/grp_dsets Group - Location: 1:94568 - Links: 1 -/E/F/grp_dsets/chunk Dataset {6/6} - Location: 1:98752 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/E/F/grp_dsets/compact Dataset {6/6} - Location: 1:99208 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/E/F/grp_dsets/compound Dataset {2/2} - Location: 1:99344 - Links: 1 - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/E/F/grp_dsets/compressed Dataset {6/6} - Location: 1:101656 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/E/F/grp_dsets/named_vl Dataset {2/2} - Location: 1:105920 - Links: 1 - Storage: <details removed for portability> - Type: shared-1:106048 variable length of - 32-bit little-endian integer -/E/F/grp_dsets/nested_vl Dataset {2/2} - Location: 1:106096 - Links: 1 - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/E/F/grp_dsets/simple Dataset {6/6} - Location: 1:106240 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/E/F/grp_dsets/vl Type - Location: 1:106048 - Links: 2 - Type: shared-1:106048 variable length of - 32-bit little-endian integer -/G Group - Location: 1:122016 - Links: 1 -/G/H Group - Location: 1:122720 - Links: 1 -/G/H/grp_nested Group - Location: 1:109096 - Links: 1 -/G/H/grp_nested/grp_dsets Group - Location: 1:109888 - Links: 1 -/G/H/grp_nested/grp_dsets/chunk Dataset {6/6} - Location: 1:114072 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/compact Dataset {6/6} - Location: 1:114528 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/compound Dataset {2/2} - Location: 1:114664 - Links: 1 - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/G/H/grp_nested/grp_dsets/compressed Dataset {6/6} - Location: 1:116976 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/named_vl Dataset {2/2} - Location: 1:121240 - Links: 1 - Storage: <details removed for portability> - Type: shared-1:121368 variable length of - 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/nested_vl Dataset {2/2} - Location: 1:121416 - Links: 1 - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/simple Dataset {6/6} - Location: 1:121560 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/vl Type - Location: 1:121368 - Links: 2 - Type: shared-1:121368 variable length of - 32-bit little-endian integer -/chunk Dataset {6/6} - Location: 1:6312 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/compact Dataset {6/6} - Location: 1:6440 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/compound Dataset {2/2} - Location: 1:8624 - Links: 1 - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/compressed Dataset {6/6} - Location: 1:12984 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_dsets Group - Location: 1:28128 - Links: 1 -/grp_dsets/chunk Dataset {6/6} - Location: 1:32312 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_dsets/compact Dataset {6/6} - Location: 1:32768 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_dsets/compound Dataset {2/2} - Location: 1:32904 - Links: 1 - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/grp_dsets/compressed Dataset {6/6} - Location: 1:35216 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_dsets/named_vl Dataset {2/2} - Location: 1:39480 - Links: 1 - Storage: <details removed for portability> - Type: shared-1:39608 variable length of - 32-bit little-endian integer -/grp_dsets/nested_vl Dataset {2/2} - Location: 1:39656 - Links: 1 - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/grp_dsets/simple Dataset {6/6} - Location: 1:39800 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_dsets/simple_group Dataset {6/6} - Location: 1:55912 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_dsets/vl Type - Location: 1:39608 - Links: 2 - Type: shared-1:39608 variable length of - 32-bit little-endian integer -/grp_empty Group - Location: 1:27336 - Links: 1 -/grp_nested Group - Location: 1:40592 - Links: 1 -/grp_nested/grp_dsets Group - Location: 1:41384 - Links: 1 -/grp_nested/grp_dsets/chunk Dataset {6/6} - Location: 1:45568 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_nested/grp_dsets/compact Dataset {6/6} - Location: 1:46024 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_nested/grp_dsets/compound Dataset {2/2} - Location: 1:46160 - Links: 1 - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/grp_nested/grp_dsets/compressed Dataset {6/6} - Location: 1:48472 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_nested/grp_dsets/named_vl Dataset {2/2} - Location: 1:52736 - Links: 1 - Storage: <details removed for portability> - Type: shared-1:52864 variable length of - 32-bit little-endian integer -/grp_nested/grp_dsets/nested_vl Dataset {2/2} - Location: 1:52912 - Links: 1 - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/grp_nested/grp_dsets/simple Dataset {6/6} - Location: 1:53056 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_nested/grp_dsets/vl Type - Location: 1:52864 - Links: 2 - Type: shared-1:52864 variable length of - 32-bit little-endian integer -/grp_rename Group - Location: 1:57120 - Links: 1 -/grp_rename/chunk Dataset {6/6} - Location: 1:61304 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/compact Dataset {6/6} - Location: 1:61760 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/compound Dataset {2/2} - Location: 1:61896 - Links: 1 - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/grp_rename/compressed Dataset {6/6} - Location: 1:64208 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_rename/grp_dsets Group - Location: 1:70000 - Links: 1 -/grp_rename/grp_dsets/chunk Dataset {6/6} - Location: 1:74184 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/grp_dsets/compact Dataset {6/6} - Location: 1:74640 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/grp_dsets/compound Dataset {2/2} - Location: 1:74776 - Links: 1 - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/grp_rename/grp_dsets/compressed Dataset {6/6} - Location: 1:77088 - Links: 1 - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_rename/grp_dsets/named_vl Dataset {2/2} - Location: 1:81352 - Links: 1 - Storage: <details removed for portability> - Type: shared-1:81480 variable length of - 32-bit little-endian integer -/grp_rename/grp_dsets/nested_vl Dataset {2/2} - Location: 1:81528 - Links: 1 - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/grp_rename/grp_dsets/simple Dataset {6/6} - Location: 1:81672 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/grp_dsets/vl Type - Location: 1:81480 - Links: 2 - Type: shared-1:81480 variable length of - 32-bit little-endian integer -/grp_rename/named_vl Dataset {2/2} - Location: 1:68472 - Links: 1 - Storage: <details removed for portability> - Type: shared-1:68600 variable length of - 32-bit little-endian integer -/grp_rename/nested_vl Dataset {2/2} - Location: 1:68648 - Links: 1 - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/grp_rename/simple Dataset {6/6} - Location: 1:68792 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/vl Type - Location: 1:68600 - Links: 2 - Type: shared-1:68600 variable length of - 32-bit little-endian integer -/named_vl Dataset {2/2} - Location: 1:17280 - Links: 1 - Storage: <details removed for portability> - Type: shared-1:17408 variable length of - 32-bit little-endian integer -/nested_vl Dataset {2/2} - Location: 1:21760 - Links: 1 - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/rename Dataset {2/2} - Location: 1:26128 - Links: 1 - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/simple Dataset {6/6} - Location: 1:800 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/simple_top Dataset {6/6} - Location: 1:23952 - Links: 1 - Storage: <details removed for portability> - Type: 32-bit little-endian integer diff --git a/tools/h5copy/testfiles/h5copytst_new.h5 b/tools/h5copy/testfiles/h5copytst_new.h5 Binary files differdeleted file mode 100644 index fd820ca..0000000 --- a/tools/h5copy/testfiles/h5copytst_new.h5 +++ /dev/null diff --git a/tools/h5copy/testfiles/h5copytst_new.out.ls b/tools/h5copy/testfiles/h5copytst_new.out.ls deleted file mode 100644 index 9df6b2e..0000000 --- a/tools/h5copy/testfiles/h5copytst_new.out.ls +++ /dev/null @@ -1,502 +0,0 @@ -############################# -Expected output for 'h5ls ../testfiles/h5copytst_new.out.h5' -############################# -Opened "../testfiles/h5copytst_new.out.h5" with sec2 driver. -/ Group - Location: 1:96 - Links: 1 -/A Group - Location: 1:65602 - Links: 1 -/A/B1 Group - Location: 1:66306 - Links: 1 -/A/B1/simple Dataset {6/6} - Location: 1:65509 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/A/B2 Group - Location: 1:69807 - Links: 1 -/A/B2/simple2 Dataset {6/6} - Location: 1:69714 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/C Group - Location: 1:72980 - Links: 1 -/C/D Group - Location: 1:73684 - Links: 1 -/C/D/simple Dataset {6/6} - Location: 1:72887 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/E Group - Location: 1:76217 - Links: 1 -/E/F Group - Location: 1:76921 - Links: 1 -/E/F/grp_dsets Group - Location: 1:75044 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/E/F/grp_dsets/chunk Dataset {6/6} - Location: 1:76014 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/E/F/grp_dsets/compact Dataset {6/6} - Location: 1:75367 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/E/F/grp_dsets/compound Dataset {2/2} - Location: 1:75470 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/E/F/grp_dsets/compressed Dataset {6/6} - Location: 1:75683 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/E/F/grp_dsets/named_vl Dataset {2/2} - Location: 1:75853 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: shared-1:75793 variable length of - 32-bit little-endian integer -/E/F/grp_dsets/nested_vl Dataset {2/2} - Location: 1:76108 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/E/F/grp_dsets/simple Dataset {6/6} - Location: 1:75274 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/E/F/grp_dsets/vl Type - Location: 1:75793 - Links: 2 - Modified: XXXX-XX-XX XX:XX:XX XXX - Type: shared-1:75793 variable length of - 32-bit little-endian integer -/G Group - Location: 1:85688 - Links: 1 -/G/H Group - Location: 1:86392 - Links: 1 -/G/H/grp_nested Group - Location: 1:84436 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/G/H/grp_nested/grp_dsets Group - Location: 1:84515 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/G/H/grp_nested/grp_dsets/chunk Dataset {6/6} - Location: 1:85485 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/compact Dataset {6/6} - Location: 1:84838 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/compound Dataset {2/2} - Location: 1:84941 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/G/H/grp_nested/grp_dsets/compressed Dataset {6/6} - Location: 1:85154 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/named_vl Dataset {2/2} - Location: 1:85324 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: shared-1:85264 variable length of - 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/nested_vl Dataset {2/2} - Location: 1:85579 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/simple Dataset {6/6} - Location: 1:84745 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/G/H/grp_nested/grp_dsets/vl Type - Location: 1:85264 - Links: 2 - Modified: XXXX-XX-XX XX:XX:XX XXX - Type: shared-1:85264 variable length of - 32-bit little-endian integer -/chunk Dataset {6/6} - Location: 1:2238 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/compact Dataset {6/6} - Location: 1:4240 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/compound Dataset {2/2} - Location: 1:6391 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/compressed Dataset {6/6} - Location: 1:6604 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_dsets Group - Location: 1:27748 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/grp_dsets/chunk Dataset {6/6} - Location: 1:28718 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_dsets/compact Dataset {6/6} - Location: 1:28071 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_dsets/compound Dataset {2/2} - Location: 1:28174 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/grp_dsets/compressed Dataset {6/6} - Location: 1:28387 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_dsets/named_vl Dataset {2/2} - Location: 1:28557 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: shared-1:28497 variable length of - 32-bit little-endian integer -/grp_dsets/nested_vl Dataset {2/2} - Location: 1:28812 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/grp_dsets/simple Dataset {6/6} - Location: 1:27978 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_dsets/simple_group Dataset {6/6} - Location: 1:46180 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_dsets/vl Type - Location: 1:28497 - Links: 2 - Modified: XXXX-XX-XX XX:XX:XX XXX - Type: shared-1:28497 variable length of - 32-bit little-endian integer -/grp_empty Group - Location: 1:27693 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/grp_nested Group - Location: 1:35940 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/grp_nested/grp_dsets Group - Location: 1:36019 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/grp_nested/grp_dsets/chunk Dataset {6/6} - Location: 1:36989 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_nested/grp_dsets/compact Dataset {6/6} - Location: 1:36342 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_nested/grp_dsets/compound Dataset {2/2} - Location: 1:36445 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/grp_nested/grp_dsets/compressed Dataset {6/6} - Location: 1:36658 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_nested/grp_dsets/named_vl Dataset {2/2} - Location: 1:36828 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: shared-1:36768 variable length of - 32-bit little-endian integer -/grp_nested/grp_dsets/nested_vl Dataset {2/2} - Location: 1:37083 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/grp_nested/grp_dsets/simple Dataset {6/6} - Location: 1:36249 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_nested/grp_dsets/vl Type - Location: 1:36768 - Links: 2 - Modified: XXXX-XX-XX XX:XX:XX XXX - Type: shared-1:36768 variable length of - 32-bit little-endian integer -/grp_rename Group - Location: 1:47077 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/grp_rename/chunk Dataset {6/6} - Location: 1:48047 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/compact Dataset {6/6} - Location: 1:47400 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/compound Dataset {2/2} - Location: 1:47503 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/grp_rename/compressed Dataset {6/6} - Location: 1:47716 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_rename/grp_dsets Group - Location: 1:55269 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX -/grp_rename/grp_dsets/chunk Dataset {6/6} - Location: 1:56239 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/grp_dsets/compact Dataset {6/6} - Location: 1:55592 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/grp_dsets/compound Dataset {2/2} - Location: 1:55695 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/grp_rename/grp_dsets/compressed Dataset {6/6} - Location: 1:55908 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Chunks: {2} 8 bytes - Storage: <details removed for portability> - Filter-0: deflate-1 OPT {1} - Type: 32-bit little-endian integer -/grp_rename/grp_dsets/named_vl Dataset {2/2} - Location: 1:56078 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: shared-1:56018 variable length of - 32-bit little-endian integer -/grp_rename/grp_dsets/nested_vl Dataset {2/2} - Location: 1:56333 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/grp_rename/grp_dsets/simple Dataset {6/6} - Location: 1:55499 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/grp_dsets/vl Type - Location: 1:56018 - Links: 2 - Modified: XXXX-XX-XX XX:XX:XX XXX - Type: shared-1:56018 variable length of - 32-bit little-endian integer -/grp_rename/named_vl Dataset {2/2} - Location: 1:47886 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: shared-1:47826 variable length of - 32-bit little-endian integer -/grp_rename/nested_vl Dataset {2/2} - Location: 1:48141 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/grp_rename/simple Dataset {6/6} - Location: 1:47307 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/grp_rename/vl Type - Location: 1:47826 - Links: 2 - Modified: XXXX-XX-XX XX:XX:XX XXX - Type: shared-1:47826 variable length of - 32-bit little-endian integer -/named_vl Dataset {2/2} - Location: 1:8657 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: shared-1:8606 variable length of - 32-bit little-endian integer -/nested_vl Dataset {2/2} - Location: 1:22942 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: variable length of - variable length of - 32-bit little-endian integer -/rename Dataset {2/2} - Location: 1:27240 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: struct { - "str1" +0 20-byte null-terminated ASCII string - "str2" +20 20-byte null-terminated ASCII string - } 40 bytes -/simple Dataset {6/6} - Location: 1:800 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer -/simple_top Dataset {6/6} - Location: 1:25099 - Links: 1 - Modified: XXXX-XX-XX XX:XX:XX XXX - Storage: <details removed for portability> - Type: 32-bit little-endian integer diff --git a/tools/h5copy/testh5copy.sh.in b/tools/h5copy/testh5copy.sh.in deleted file mode 100644 index 859d7c8..0000000 --- a/tools/h5copy/testh5copy.sh.in +++ /dev/null @@ -1,607 +0,0 @@ -#! /bin/sh -# -# Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. -# All rights reserved. -# -# This file is part of HDF5. The full HDF5 copyright notice, including -# terms governing use, modification, and redistribution, is contained in -# the files COPYING and Copyright.html. COPYING can be found at the root -# of the source code distribution tree; Copyright.html can be found at the -# root level of an installed copy of the electronic HDF5 document set and -# is linked from the top-level documents page. It can also be found at -# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have -# access to either file, you may request a copy from help@hdfgroup.org. -# -# Tests for the h5copy tool -# -# Pedro Vicente Nunes (pvn@hdfgroup.org), Albert Cheng (acheng@hdfgroup.org) -# Thursday, July 20, 2006 -# - -srcdir=@srcdir@ - -# source dirs -SRC_TOOLS="$srcdir/.." -SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" -# testfiles source dirs for tools -SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES" -SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES" -SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles" -SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles" -SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles" -SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles" -SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles" -SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles" - -TESTNAME=h5copy -EXIT_SUCCESS=0 -EXIT_FAILURE=1 - -###################################################################### -# test files -# -------------------------------------------------------------------- -# All the test files copy from source directory to test directory -# NOTE: Keep this framework to add/remove test files. -# Any test files from other tools can be used in this framework. -# This list are also used for checking exist. -# Comment '#' without space can be used. -# -------------------------------------------------------------------- -# List of files that will be copied over to local test dir -LIST_HDF5_TEST_FILES=" -$SRC_H5COPY_TESTFILES/h5copytst.h5 -$SRC_H5COPY_TESTFILES/h5copy_ref.h5 -$SRC_H5COPY_TESTFILES/h5copy_extlinks_src.h5 -$SRC_H5COPY_TESTFILES/h5copy_extlinks_trg.h5 -" - -# List of expect files that will be copied over to local test dir -LIST_OTHER_TEST_FILES=" -$SRC_H5COPY_TESTFILES/h5copy_misc1.out -" - -H5COPY=h5copy # The tool name -H5COPY_BIN=`pwd`/$H5COPY # The path of the tool binary -H5DIFF=h5diff # The h5diff tool name -H5DIFF_BIN=`pwd`/../h5diff/$H5DIFF # The path of the h5diff tool binary -H5LS=h5ls # The h5ls tool name -H5LS_ARGS=-Svr # Arguments to the h5ls tool -H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary - -RM='rm -rf' -CMP='cmp -s' -DIFF='diff -c' -CP='cp' -DIRNAME='dirname' -LS='ls' -AWK='awk' - -nerrors=0 -verbose=yes -h5haveexitcode=yes # default is yes - -TESTDIR=./testfiles -test -d $TESTDIR || mkdir $TESTDIR - -# RUNSERIAL is used. Check if it can return exit code from executalbe correctly. -if [ -n "$RUNSERIAL_NOEXITCODE" ]; then - echo "***Warning*** Serial Exit Code is not passed back to shell corretly." - echo "***Warning*** Exit code checking is skipped." - h5haveexitcode=no -fi - -# -# copy test files and expected output files from source dirs to test dir -# -COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES" - -COPY_TESTFILES_TO_TESTDIR() -{ - # copy test files. Used -f to make sure get a new copy - for tstfile in $COPY_TESTFILES - do - # ignore '#' comment - echo $tstfile | tr -d ' ' | grep '^#' > /dev/null - RET=$? - if [ $RET -eq 1 ]; then - # skip cp if srcdir is same as destdir - # this occurs when build/test performed in source dir and - # make cp fail - SDIR=`$DIRNAME $tstfile` - INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` - INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` - if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $TESTDIR - if [ $? -ne 0 ]; then - echo "Error: FAILED to copy $tstfile ." - - # Comment out this to CREATE expected file - exit $EXIT_FAILURE - fi - fi - fi - done -} - -CLEAN_TESTFILES_AND_TESTDIR() -{ - # skip rm if srcdir is same as destdir - # this occurs when build/test performed in source dir and - # make cp fail - SDIR=$SRC_H5COPY_TESTFILES - INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` - INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` - if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $RM $TESTDIR - fi -} - - -# Print a "SKIP" message -SKIP() { - TESTING $H5COPY $@ - echo " -SKIP-" -} - -# Print a line-line message left justified in a field of 70 characters -# beginning with the word "Testing". -TESTING() -{ - SPACES=" " - echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012' -} - -# Print a line-line message left justified in a field of 70 characters -# beginning with the word "Verifying". -# -VERIFY() -{ - SPACES=" " - echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012' -} - -# Print a line-line message left justified in a field of 70 characters -# beginning with the word "Verifying". -# -VERIFY_OUTPUT() -{ - SPACES=" " - echo "Verifying output files $* $SPACES" | cut -c1-70 | tr -d '\012' -} - -# Source in the output filter function definitions. -. $srcdir/../../bin/output_filter.sh - -# Run a test and print PASS or *FAIL*. If h5copy can complete -# with exit status 0, consider it pass. If a test fails then increment -# the `nerrors' global variable. -# Assumed arguments: -# $1 is -i -# $2 is input file -# $3 is -o -# $4 is output file -# $* everything else arguments for h5copy. - -TOOLTEST() -{ - actualout="$TESTDIR/tooltest.actualout" - actualerr="$TESTDIR/tooltest.actualerr" - runh5diff=yes - if [ "$1" = -i ]; then - inputfile=$2 - else - if [ "$1" = -f ]; then - inputfile=$4 - else - inputfile=$3 - fi - runh5diff=no - fi - if [ "$3" = -o ]; then - outputfile=$4 - else - if [ "$1" = -f ]; then - outputfile=$6 - else - outputfile=$5 - fi - runh5diff=no - fi - - TESTING $H5COPY $@ - ( - echo "#############################" - echo " output for '$H5COPY $@'" - echo "#############################" - $RUNSERIAL $H5COPY_BIN $@ - ) > $actualout 2> $actualerr - RET=$? - if [ $RET != 0 ]; then - echo "*FAILED*" - echo "failed result is:" - cat $actualout - nerrors="`expr $nerrors + 1`" - else - echo " PASSED" - - if [ $runh5diff != no ]; then - H5DIFFTEST $inputfile $outputfile $7 $9 - fi - - # Clean up output file - if test -z "$HDF5_NOCLEANUP"; then - rm -f $actualout $actualerr $outputfile - fi - fi -} - -# TOOLTEST back-to-back -TOOLTEST_PREFILL() -{ - actualout="$TESTDIR/tooltest.actualout" - actualerr="$TESTDIR/tooltest.actualerr" - runh5diff=yes - if [ "$1" = -i ]; then - inputfile=$2 - else - runh5diff=no - fi - if [ "$3" = -o ]; then - outputfile=$4 - else - runh5diff=no - fi - - grp_name=$5 - grp_name2=$6 - obj_name=$7 - obj_name2=$8 - - TESTING $H5COPY $@ - ( - echo "#############################" - echo " output for '$H5COPY $@'" - echo "#############################" - $RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name2 - ) > $actualout 2> $actualerr - RET=$? - if [ $RET != 0 ]; then - echo "*FAILED*" - echo "failed result is:" - cat $actualout - nerrors="`expr $nerrors + 1`" - else - TESTING $H5COPY $@ - ( - echo "#############################" - echo " output for '$H5COPY $@'" - echo "#############################" - $RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $obj_name -d $obj_name2 - ) > $actualout 2> $actualerr - RET=$? - if [ $RET != 0 ]; then - echo "*FAILED*" - echo "failed result is:" - cat $actualout - nerrors="`expr $nerrors + 1`" - else - echo " PASSED" - - if [ $runh5diff != no ]; then - H5DIFFTEST $inputfile $outputfile $obj_name $obj_name2 - fi - - # Clean up output file - if test -z "$HDF5_NOCLEANUP"; then - rm -f $actualout $actualerr $outputfile - fi - fi - fi -} - -# TOOLTEST back-to-back -TOOLTEST_SAME() -{ - actualout="$TESTDIR/tooltest.actualout" - actualerr="$TESTDIR/tooltest.actualerr" - runh5diff=yes - if [ "$1" = -i ]; then - inputfile=$2 - else - runh5diff=no - fi - if [ "$3" = -o ]; then - outputfile=$4 - else - runh5diff=no - fi - - grp_name=$5 - grp_name2=$6 - - TESTING $H5COPY $@ - ( - echo "#############################" - echo " output for '$H5COPY $@'" - echo "#############################" - $RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name - ) > $actualout 2> $actualerr - RET=$? - if [ $RET != 0 ]; then - echo "*FAILED*" - echo "failed result is:" - cat $actualout - nerrors="`expr $nerrors + 1`" - else - TESTING $H5COPY $@ - ( - echo "#############################" - echo " output for '$H5COPY $@'" - echo "#############################" - $RUNSERIAL $H5COPY_BIN -i $outputfile -o $outputfile -v -s $grp_name -d $grp_name2 - ) > $actualout 2> $actualerr - RET=$? - if [ $RET != 0 ]; then - echo "*FAILED*" - echo "failed result is:" - cat $actualout - nerrors="`expr $nerrors + 1`" - else - echo " PASSED" - - if [ $runh5diff != no ]; then - H5DIFFTEST $outputfile $outputfile $grp_name $grp_name2 - fi - - # Clean up output file - if test -z "$HDF5_NOCLEANUP"; then - rm -f $actualout $actualerr $outputfile - fi - fi - fi -} - - -# Compare the two text files -# PASS if same -# FAIL if different, and show the diff -# -# Assumed arguments: -# $1 is text file1 (expected output) -# $2 is text file2 (actual output) -CMP_OUTPUT() -{ - expect=$1 - actual=$2 - - VERIFY_OUTPUT $@ - if [ ! -f $expect ]; then - # Create the expect file if it doesn't yet exist. - echo " CREATED" - cp $actual $expect - elif $CMP $expect $actual; then - echo " PASSED" - else - echo "*FAILED*" - echo " Expected output differs from actual output" - nerrors="`expr $nerrors + 1`" - test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' - fi -} - -TOOLTEST_FAIL() -{ - expectout="$TESTDIR/$1" - actualout="$TESTDIR/$1.actualout" - actualerr="$TESTDIR/$1.actualerr" - actualout_sav=${actualout}-sav - actualerr_sav=${actualerr}-sav - shift - if [ "$1" = -i ]; then - inputfile=$2 - fi - if [ "$3" = -o ]; then - outputfile=$4 - fi - - TESTING $H5COPY $@ - ( - #echo "#############################" - #echo " output for '$H5COPY $@'" - #echo "#############################" - $RUNSERIAL $H5COPY_BIN $@ - ) > $actualout 2> $actualerr - - RET=$? - # save actualout and actualerr in case they are needed later. - cp $actualout $actualout_sav - STDOUT_FILTER $actualout - cp $actualerr $actualerr_sav - STDERR_FILTER $actualerr - if [ $RET != 0 ]; then - echo " PASSED" - # Verifying output text from h5copy - if [ "$expectout" != "SKIP" ]; then - # combine stderr to stdout to compare the output at once. - # We may seperate stdout and stderr later. - cat $actualerr >> $actualout - CMP_OUTPUT $expectout $actualout - fi - else - echo "*FAILED*" - echo "failed result is:" - cat $actualout - nerrors="`expr $nerrors + 1`" - fi - - - # Clean up output file - if test -z "$HDF5_NOCLEANUP"; then - rm -f $actualout $actualerr $actualout_sav $actualerr_sav $outputfile - fi -} - - -# Call the h5diff tool -# -H5DIFFTEST() -{ - VERIFY $@ - $RUNSERIAL $H5DIFF_BIN -q "$@" - RET=$? - if [ $RET != 0 ] ; then - echo "*FAILED*" - nerrors="`expr $nerrors + 1`" - else - echo " PASSED" - fi -} - -# Call the h5diff tool with a call that is expected to fail -# -H5DIFFTEST_FAIL() -{ - VERIFY $@ - $RUNSERIAL $H5DIFF_BIN -q "$@" - RET=$? - - if [ $h5haveexitcode = 'yes' -a $RET != 1 ] ; then - echo "*FAILED*" - nerrors="`expr $nerrors + 1`" - else - echo " PASSED" - fi -} - -# Copy single datasets of various forms from one group to another, -# adding object copied to the destination file each time -# -# Assumed arguments: -# <none> -COPY_OBJECTS() -{ - TESTFILE="$TESTDIR/h5copytst.h5" - - echo "Test copying various forms of datasets" - TOOLTEST -i $TESTFILE -o $TESTDIR/simple.out.h5 -v -s simple -d simple - TOOLTEST -i $TESTFILE -o $TESTDIR/chunk.out.h5 -v -s chunk -d chunk - TOOLTEST -i $TESTFILE -o $TESTDIR/compact.out.h5 -v -s compact -d compact - TOOLTEST -i $TESTFILE -o $TESTDIR/compound.out.h5 -v -s compound -d compound - TOOLTEST -i $TESTFILE -o $TESTDIR/compressed.out.h5 -v -s compressed -d compressed - TOOLTEST -i $TESTFILE -o $TESTDIR/named_vl.out.h5 -v -s named_vl -d named_vl - TOOLTEST -i $TESTFILE -o $TESTDIR/nested_vl.out.h5 -v -s nested_vl -d nested_vl - TOOLTEST -i $TESTFILE -o $TESTDIR/dset_attr.out.h5 -v -s /dset_attr -d /dset_attr - - echo "Test copying dataset within group in source file to root of destination" - TOOLTEST -i $TESTFILE -o $TESTDIR/simple_top.out.h5 -v -s grp_dsets/simple -d simple_top - - echo "Test copying & renaming dataset" - TOOLTEST -i $TESTFILE -o $TESTDIR/dsrename.out.h5 -v -s compound -d rename - - echo "Test copying empty, 'full' & 'nested' groups" - TOOLTEST -i $TESTFILE -o $TESTDIR/grp_empty.out.h5 -v -s grp_empty -d grp_empty - TOOLTEST -i $TESTFILE -o $TESTDIR/grp_dsets.out.h5 -v -s grp_dsets -d grp_dsets - TOOLTEST -i $TESTFILE -o $TESTDIR/grp_nested.out.h5 -v -s grp_nested -d grp_nested - TOOLTEST -i $TESTFILE -o $TESTDIR/grp_attr.out.h5 -v -s grp_attr -d grp_attr - - echo "Test copying dataset within group in source file to group in destination" - TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/simple_group.out.h5 grp_dsets grp_dsets /grp_dsets/simple /grp_dsets/simple_group - - echo "Test copying & renaming group" - TOOLTEST -i $TESTFILE -o $TESTDIR/grp_rename.out.h5 -v -s grp_dsets -d grp_rename - - echo "Test copying 'full' group hierarchy into group in destination file" - TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/grp_dsets_rename.out.h5 grp_dsets grp_rename grp_dsets /grp_rename/grp_dsets - - echo "Test copying objects into group hier. that doesn't exist yet in destination file" - TOOLTEST -i $TESTFILE -o $TESTDIR/A_B1_simple.out.h5 -vp -s simple -d /A/B1/simple - TOOLTEST -i $TESTFILE -o $TESTDIR/A_B2_simple2.out.h5 -vp -s simple -d /A/B2/simple2 - TOOLTEST -i $TESTFILE -o $TESTDIR/C_D_simple.out.h5 -vp -s /grp_dsets/simple -d /C/D/simple - TOOLTEST -i $TESTFILE -o $TESTDIR/E_F_grp_dsets.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets - TOOLTEST -i $TESTFILE -o $TESTDIR/G_H_grp_nested.out.h5 -vp -s /grp_nested -d /G/H/grp_nested -} - -# Copy references in various way. -# -# Assumed arguments: -# <none> -COPY_REFERENCES() -{ - TESTFILE="$TESTDIR/h5copy_ref.h5" - - echo "Test copying object and region references" - TOOLTEST -f ref -i $TESTFILE -o $TESTDIR/region_ref.out.h5 -v -s / -d /COPY -} - -# Copy external links. -# adding to the destination file each time compare the result -# -# Assumed arguments: -# <none> -COPY_EXT_LINKS() -{ - TESTFILE="$TESTDIR/h5copy_extlinks_src.h5" - - echo "Test copying external link directly without -f ext" - TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link.out.h5 -s /group_ext/extlink_dset -d /copy1_dset - - echo "Test copying external link directly with -f ext" - TOOLTEST -f ext -i $TESTFILE -o $TESTDIR/ext_link_f.out.h5 -v -s /group_ext/extlink_dset -d /copy2_dset - - echo "Test copying dangling external link (no obj) directly without -f ext" - TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_noobj.out.h5 -s /group_ext/extlink_notyet1 -d /copy_dangle1_1 - - echo "Test copying dangling external link (no obj) directly with -f ext" - TOOLTEST -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_noobj_f.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2 - - echo "Test copying dangling external link (no file) directly without -f ext" - TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_nofile.out.h5 -s /group_ext/extlink_notyet2 -d /copy_dangle2_1 - - echo "Test copying dangling external link (no file) directly with -f ext" - TOOLTEST -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_nofile_f.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2 - - echo "Test copying a group contains external links without -f ext" - TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link_group.out.h5 -s /group_ext -d /copy1_group - - echo "Test copying a group contains external links with -f ext" - TOOLTEST -f ext -i $TESTFILE -o $TESTDIR/ext_link_group_f.out.h5 -v -s /group_ext -d /copy2_group -} - -# Test misc. -# -# Assumed arguments: -# <none> -TEST_MISC() -{ - TESTFILE="$TESTDIR/h5copytst.h5" - - echo "Test copying object into group which doesn't exist, without -p" - TOOLTEST_FAIL h5copy_misc1.out -i $TESTFILE -o $TESTDIR/h5copy_misc1.out.h5 -v -s /simple -d /g1/g2/simple - - echo "Test copying objects to the same file " - TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile1.out.h5 /simple /simple_cp - TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile2.out.h5 /grp_dsets /grp_dsets_cp -} - -############################################################################## -### T H E T E S T S ### -############################################################################## -# prepare for test -COPY_TESTFILES_TO_TESTDIR - -# Start tests -COPY_OBJECTS -COPY_REFERENCES -COPY_EXT_LINKS -TEST_MISC - -# Clean up temporary files/directories -CLEAN_TESTFILES_AND_TESTDIR - -if test $nerrors -eq 0 ; then - echo "All $TESTNAME tests passed." - exit $EXIT_SUCCESS -else - echo "$TESTNAME tests failed with $nerrors errors." - exit $EXIT_FAILURE -fi |