[svn-r12297] Purpose:

new feature

Description:
added support for the printout of dataset region references differences
added a new test for this
merged the h5diff generator of test files into a single file

Solution:

Platforms tested:
linux 32, 64
solaris

Misc. update:

1 files changed, 0 insertions, 665 deletions

diff --git a/tools/h5diff/testh5diff_dset.c b/tools/h5diff/testh5diff_dset.c
deleted file mode 100644
index 6d18c8a..0000000
--- a/tools/h5diff/testh5diff_dset.c
+++ /dev/null
@@ -1,665 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by the Board of Trustees of the University of Illinois.         *
- * All rights reserved.                                                      *
- *                                                                           *
- * This file is part of HDF5.  The full HDF5 copyright notice, including     *
- * terms governing use, modification, and redistribution, is contained in    *
- * the files COPYING and Copyright.html.  COPYING can be found at the root   *
- * of the source code distribution tree; Copyright.html can be found at the  *
- * root level of an installed copy of the electronic HDF5 document set and   *
- * is linked from the top-level documents page.  It can also be found at     *
- * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have     *
- * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-#include "testh5diff.h"
-
-#define STR_SIZE 3
-
-/*-------------------------------------------------------------------------
- * Function: write_dset_in
- *
- * Purpose: write datasets in LOC_ID
- *
- * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
- *
- * Date: November 12, 2003
- *
- *-------------------------------------------------------------------------
- */
-
-
-static void write_dset_in(hid_t loc_id,
-                   const char* dset_name, /* for saving reference to dataset*/
-                   hid_t file_id,
-                   int make_diffs /* flag to modify data buffers */)
-{
- /* Compound datatype */
- typedef struct s_t
- {
-  char   a;
-  double b;
- } s_t;
-
- typedef enum
- {
-  RED,
-  GREEN
- } e_t;
-
- hid_t   dset_id;
- hid_t   space_id;
- hid_t   type_id;
- hid_t   plist_id;
- herr_t  status;
- int     val, i, j, k, n;
- float   f;
- int     fillvalue=2;
-
- /* create 1D attributes with dimension [2], 2 elements */
- hsize_t    dims[1]={2};
- char       buf1[2][STR_SIZE]= {"ab","de"}; /* string */
- char       buf2[2]= {1,2};                 /* bitfield, opaque */
- s_t        buf3[2]= {{1,2},{3,4}};         /* compound */
- hobj_ref_t buf4[2];                        /* reference */
- e_t        buf45[2]= {RED,GREEN};          /* enum */
- hvl_t      buf5[2];                        /* vlen */
- hsize_t    dimarray[1]={3};                /* array dimension */
- int        buf6[2][3]= {{1,2,3},{4,5,6}};  /* array */
- int        buf7[2]= {1,2};                 /* integer */
- float      buf8[2]= {1,2};                 /* float */
-
- /* create 2D attributes with dimension [3][2], 6 elements */
- hsize_t    dims2[2]={3,2};
- char       buf12[6][STR_SIZE]= {"ab","cd","ef","gh","ij","kl"};  /* string */
- char       buf22[3][2]= {{1,2},{3,4},{5,6}};                     /* bitfield, opaque */
- s_t        buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}};   /* compound */
- hobj_ref_t buf42[3][2];                                          /* reference */
- hvl_t      buf52[3][2];                                          /* vlen */
- int        buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}};  /* array */
- int        buf72[3][2]= {{1,2},{3,4},{5,6}};                     /* integer */
- float      buf82[3][2]= {{1,2},{3,4},{5,6}};                     /* float */
-
- /* create 3D attributes with dimension [4][3][2], 24 elements */
- hsize_t    dims3[3]={4,3,2};
- char       buf13[24][STR_SIZE]= {"ab","cd","ef","gh","ij","kl","mn","pq",
- "rs","tu","vw","xz","AB","CD","EF","GH",
- "IJ","KL","MN","PQ","RS","TU","VW","XZ"};  /* string */
- char       buf23[4][3][2];    /* bitfield, opaque */
- s_t        buf33[4][3][2];    /* compound */
- hobj_ref_t buf43[4][3][2];    /* reference */
- hvl_t      buf53[4][3][2];    /* vlen */
- int        buf63[24][3];      /* array */
- int        buf73[4][3][2];    /* integer */
- float      buf83[4][3][2];    /* float */
-
-
-/*-------------------------------------------------------------------------
- * 1D
- *-------------------------------------------------------------------------
- */
-
-/*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
-
-
- if (make_diffs)
- {
-  for (i=0; i<2; i++)
-   for (j=0; j<2; j++)
-   {
-    buf1[i][j]='z';
-   }
- }
-
-
- type_id = H5Tcopy(H5T_C_S1);
- status  = H5Tset_size(type_id,STR_SIZE);
- write_dset(loc_id,1,dims,"string",type_id,buf1);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
-  for (i=0; i<2; i++)
-   buf2[i]=buf2[1]=0;
- }
-
- type_id = H5Tcopy(H5T_STD_B8LE);
- write_dset(loc_id,1,dims,"bitfield",type_id,buf2);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
-  for (i=0; i<2; i++)
-  {
-   buf3[i].a=0; buf3[i].b=0;
-  }
- }
-
- type_id = H5Tcreate(H5T_OPAQUE, 1);
- status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
- write_dset(loc_id,1,dims,"opaque",type_id,buf2);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
-
-
- if (make_diffs)
- {
-  for (i=0; i<2; i++)
-  {
-   buf45[i]=GREEN;
-  }
- }
-
- type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
- H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
- H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
- write_dset(loc_id,1,dims,"compound",type_id,buf3);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* Create references to dataset */
- if (dset_name)
- {
-  status=H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1);
-  status=H5Rcreate(&buf4[1],file_id,dset_name,H5R_OBJECT,-1);
-  write_dset(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4);
- }
-
-/*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
- type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
- H5Tenum_insert(type_id, "RED",   (val = 0, &val));
- H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
- write_dset(loc_id,1,dims,"enum",type_id,buf45);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
- /* Allocate and initialize VL dataset to write */
-
- buf5[0].len = 1;
- buf5[0].p = malloc( 1 * sizeof(int));
- ((int *)buf5[0].p)[0]=1;
- buf5[1].len = 2;
- buf5[1].p = malloc( 2 * sizeof(int));
- ((int *)buf5[1].p)[0]=2;
- ((int *)buf5[1].p)[1]=3;
-
- if (make_diffs)
- {
-  ((int *)buf5[0].p)[0]=0;
-  ((int *)buf5[1].p)[0]=0;
-  ((int *)buf5[1].p)[1]=0;
- }
-
- space_id = H5Screate_simple(1,dims,NULL);
- type_id = H5Tvlen_create(H5T_NATIVE_INT);
- dset_id = H5Dcreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT);
- status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf5);
- assert(status>=0);
- status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5);
- assert(status>=0);
- status = H5Dclose(dset_id);
- status = H5Tclose(type_id);
- status = H5Sclose(space_id);
-
-/*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
-  for (i=0; i<2; i++)
-   for (j=0; j<3; j++)
-   {
-    buf6[i][j]=0;
-   }
- }
-
- type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
- write_dset(loc_id,1,dims,"array",type_id,buf6);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_INTEGER and H5T_FLOAT
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
-  for (i=0; i<2; i++)
-  {
-   buf7[i]=0;
-   buf8[i]=0;
-  }
- }
-
- write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7);
- write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8);
-
-
-/*-------------------------------------------------------------------------
- * 2D
- *-------------------------------------------------------------------------
- */
-
-/*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
-  memset(buf12, 'z', sizeof buf12);
- }
-
-
- type_id = H5Tcopy(H5T_C_S1);
- status  = H5Tset_size(type_id,STR_SIZE);
- write_dset(loc_id,2,dims2,"string2D",type_id,buf12);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
-
- if (make_diffs)
- {
-  memset(buf22,0,sizeof buf22);
- }
-
- type_id = H5Tcopy(H5T_STD_B8LE);
- write_dset(loc_id,2,dims2,"bitfield2D",type_id,buf22);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
- type_id = H5Tcreate(H5T_OPAQUE, 1);
- status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
- write_dset(loc_id,2,dims2,"opaque2D",type_id,buf22);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
-  memset(buf32,0,sizeof buf32);
- }
-
- type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
- H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
- H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
- write_dset(loc_id,2,dims2,"compound2D",type_id,buf32);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* Create references to dataset */
- if (dset_name)
- {
-  for (i = 0; i < 3; i++) {
-   for (j = 0; j < 2; j++) {
-    status=H5Rcreate(&buf42[i][j],file_id,dset_name,H5R_OBJECT,-1);
-   }
-  }
-  write_dset(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42);
- }
-
-/*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
-
- type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
- H5Tenum_insert(type_id, "RED",   (val = 0, &val));
- H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
- write_dset(loc_id,2,dims2,"enum2D",type_id,0);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
-/* Allocate and initialize VL dataset to write */
- n=0;
- for (i = 0; i < 3; i++) {
-  for (j = 0; j < 2; j++) {
-    int l;
-    buf52[i][j].p = malloc((i + 1) * sizeof(int));
-    buf52[i][j].len = i + 1;
-    for (l = 0; l < i + 1; l++)
-    if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
-    else ((int *)buf52[i][j].p)[l] = n++;
-  }
- }
-
- space_id = H5Screate_simple(2,dims2,NULL);
- type_id = H5Tvlen_create(H5T_NATIVE_INT);
- dset_id = H5Dcreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT);
- status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf52);
- assert(status>=0);
- status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52);
- assert(status>=0);
- status = H5Dclose(dset_id);
- status = H5Tclose(type_id);
- status = H5Sclose(space_id);
-
-/*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
-  memset(buf62,0,sizeof buf62);
- }
-
-
- type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
- write_dset(loc_id,2,dims2,"array2D",type_id,buf62);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_INTEGER, write a fill value
- *-------------------------------------------------------------------------
- */
-
-
- if (make_diffs)
- {
-  memset(buf72,0,sizeof buf72);
-  memset(buf82,0,sizeof buf82);
- }
-
-
- plist_id = H5Pcreate(H5P_DATASET_CREATE);
- status = H5Pset_fill_value(plist_id, H5T_NATIVE_INT, &fillvalue);
- space_id = H5Screate_simple(2,dims2,NULL);
- dset_id = H5Dcreate(loc_id,"integer2D",H5T_NATIVE_INT,space_id,plist_id);
- status = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf72);
- status = H5Pclose(plist_id);
- status = H5Dclose(dset_id);
- status = H5Sclose(space_id);
-
-/*-------------------------------------------------------------------------
- * H5T_FLOAT
- *-------------------------------------------------------------------------
- */
-
- write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82);
-
-
-/*-------------------------------------------------------------------------
- * 3D
- *-------------------------------------------------------------------------
- */
-
-/*-------------------------------------------------------------------------
- * H5T_STRING
- *-------------------------------------------------------------------------
- */
-
- if (make_diffs)
- {
-  memset(buf13,'z',sizeof buf13);
- }
-
- type_id = H5Tcopy(H5T_C_S1);
- status  = H5Tset_size(type_id,STR_SIZE);
- write_dset(loc_id,3,dims3,"string3D",type_id,buf13);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_BITFIELD
- *-------------------------------------------------------------------------
- */
-
-
- n=1;
- for (i = 0; i < 4; i++) {
-  for (j = 0; j < 3; j++) {
-   for (k = 0; k < 2; k++) {
-    if (make_diffs) buf23[i][j][k]=0;
-    else buf23[i][j][k]=n++;
-   }
-  }
- }
-
-
- type_id = H5Tcopy(H5T_STD_B8LE);
- write_dset(loc_id,3,dims3,"bitfield3D",type_id,buf23);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_OPAQUE
- *-------------------------------------------------------------------------
- */
- type_id = H5Tcreate(H5T_OPAQUE, 1);
- status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
- write_dset(loc_id,3,dims3,"opaque3D",type_id,buf23);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_COMPOUND
- *-------------------------------------------------------------------------
- */
-
- n=1;
- for (i = 0; i < 4; i++) {
-  for (j = 0; j < 3; j++) {
-   for (k = 0; k < 2; k++) {
-    if (make_diffs) {
-     buf33[i][j][k].a=0;
-     buf33[i][j][k].b=0;
-    }
-    else {
-     buf33[i][j][k].a=n++;
-     buf33[i][j][k].b=n++;
-    }
-   }
-  }
- }
-
-
- type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
- H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
- H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
- write_dset(loc_id,3,dims3,"compound3D",type_id,buf33);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_REFERENCE
- *-------------------------------------------------------------------------
- */
- /* Create references to dataset */
- if (dset_name)
- {
-  for (i = 0; i < 4; i++) {
-   for (j = 0; j < 3; j++) {
-    for (k = 0; k < 2; k++)
-     status=H5Rcreate(&buf43[i][j][k],file_id,dset_name,H5R_OBJECT,-1);
-   }
-  }
- write_dset(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43);
- }
-
-/*-------------------------------------------------------------------------
- * H5T_ENUM
- *-------------------------------------------------------------------------
- */
-
- type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
- H5Tenum_insert(type_id, "RED",   (val = 0, &val));
- H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
- write_dset(loc_id,3,dims3,"enum3D",type_id,0);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_VLEN
- *-------------------------------------------------------------------------
- */
-
- /* Allocate and initialize VL dataset to write */
- n=0;
- for (i = 0; i < 4; i++) {
-  for (j = 0; j < 3; j++) {
-   for (k = 0; k < 2; k++) {
-    int l;
-    buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
-    buf53[i][j][k].len = i + 1;
-    for (l = 0; l < i + 1; l++)
-    if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0;
-    else ((int *)buf53[i][j][k].p)[l] = n++;
-   }
-  }
- }
-
- space_id = H5Screate_simple(3,dims3,NULL);
- type_id = H5Tvlen_create(H5T_NATIVE_INT);
- dset_id = H5Dcreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT);
- status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf53);
- assert(status>=0);
- status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53);
- assert(status>=0);
- status = H5Dclose(dset_id);
- status = H5Tclose(type_id);
- status = H5Sclose(space_id);
-
-/*-------------------------------------------------------------------------
- * H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
-
- n=1;
- for (i = 0; i < 24; i++) {
-  for (j = 0; j < (int)dimarray[0]; j++) {
-    if (make_diffs) buf63[i][j]=0;
-    else buf63[i][j]=n++;
-  }
- }
-
- type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
- write_dset(loc_id,3,dims3,"array3D",type_id,buf63);
- status = H5Tclose(type_id);
-
-/*-------------------------------------------------------------------------
- * H5T_INTEGER and H5T_FLOAT
- *-------------------------------------------------------------------------
- */
- n=1; f=1;
- for (i = 0; i < 4; i++) {
-  for (j = 0; j < 3; j++) {
-   for (k = 0; k < 2; k++) {
-    if (make_diffs) {
-     buf73[i][j][k]=0;
-     buf83[i][j][k]=0;
-    }
-    else {
-     buf73[i][j][k]=n++;
-     buf83[i][j][k]=f++;
-    }
-   }
-  }
- }
- write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73);
- write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83);
-}
-
-
-/*-------------------------------------------------------------------------
- * Check all HDF5 classes
- * H5T_INTEGER, H5T_FLOAT
- * H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE,
- * H5T_ENUM, H5T_VLEN, H5T_ARRAY
- *-------------------------------------------------------------------------
- */
-
-
-int test_dsetall(const char *file,
-                 int make_diffs /* flag to modify data buffers */)
-{
- hid_t   file_id;
- hid_t   dset_id;
- hid_t   group_id;
- hid_t   space_id;
- hsize_t dims[1]={2};
- herr_t  status;
- int     buf[2]={1,2};
-
- if (make_diffs)
- {
-  memset(buf,0,sizeof buf);
- }
-
- /* Create a file  */
- if ((file_id  = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0)
-  return -1;
-
- /* Create a 1D dataset */
- space_id = H5Screate_simple(1,dims,NULL);
- dset_id  = H5Dcreate(file_id,"dset",H5T_NATIVE_INT,space_id,H5P_DEFAULT);
- status   = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf);
- status   = H5Sclose(space_id);
- assert(status>=0);
-
- /* Create a group */
- group_id  = H5Gcreate(file_id,"g1",0);
-
-/*-------------------------------------------------------------------------
- * write a series of datasets on the group
- *-------------------------------------------------------------------------
- */
-
- write_dset_in(group_id,"/dset",file_id,make_diffs);
-
- /* Close */
- status = H5Dclose(dset_id);
- assert(status>=0);
- status = H5Gclose(group_id);
- assert(status>=0);
-
- /* Close file */
- status = H5Fclose(file_id);
- assert(status>=0);
- return status;
-}
-
-
-