[svn-r25333] Bring revisions #24948 - #25120 from trunk to revise_chunks.

Tested on jam, ostrich, koala, platypus.

12 files changed, 59 insertions, 25 deletions

diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt
index 5620968..35c55a4 100644
--- a/tools/h5diff/CMakeLists.txt
+++ b/tools/h5diff/CMakeLists.txt
@@ -55,9 +55,9 @@ endif (BUILD_TESTING)
 ##############################################################################
 ##############################################################################
 
-#-----------------------------------------------------------------------------

-# Rules for Installation of tools using make Install target

-#-----------------------------------------------------------------------------

+#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
 
 #INSTALL_PROGRAM_PDB (h5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications)
 
diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in
index f012f67..08008d7 100644
--- a/tools/h5diff/Makefile.in
+++ b/tools/h5diff/Makefile.in
@@ -514,7 +514,6 @@ LIPO = @LIPO@
 LL_PATH = @LL_PATH@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
-LT_ADD_LIBHDF5_DEPENDENCY = @LT_ADD_LIBHDF5_DEPENDENCY@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
 MAINT = @MAINT@
 MAKEINFO = @MAKEINFO@
diff --git a/tools/h5diff/h5diff_common.c b/tools/h5diff/h5diff_common.c
index 59cab0d..a371cc0 100644
--- a/tools/h5diff/h5diff_common.c
+++ b/tools/h5diff/h5diff_common.c
@@ -103,6 +103,13 @@ void parse_command_line(int argc,
     /* NaNs are handled by default */
     options->do_nans = 1;
 
+    /* not Listing objects that are not comparable */
+    options->m_list_not_cmp = 0;
+
+    /* initially no not-comparable. */
+    /**this is bad in mixing option with results**/
+    options->not_cmp=0;
+
     /* init for exclude-path option */
     exclude_head = NULL;
 
diff --git a/tools/h5diff/testfiles/h5diff_101w.txt b/tools/h5diff/testfiles/h5diff_101w.txt
index d1f49da..71f4e87 100644
--- a/tools/h5diff/testfiles/h5diff_101w.txt
+++ b/tools/h5diff/testfiles/h5diff_101w.txt
@@ -1,11 +1,11 @@
-dataset: </g1/d1> and </g1/d2>

-size:           [3x2]           [3x2]

-position        d1              d2              difference          

-------------------------------------------------------------

-[ 0 1 ]          1e-016          4e-016          3e-016         

-[ 1 0 ]          1e-016          2e-016          1e-016         

-[ 1 1 ]          0               1e-016          1e-016         

-[ 2 0 ]          3.3e-016        1e-016          2.3e-016       

-[ 2 1 ]          1e-016          0               1e-016         

-5 differences found

-EXIT CODE: 1

+dataset: </g1/d1> and </g1/d2>
+size:           [3x2]           [3x2]
+position        d1              d2              difference          
+------------------------------------------------------------
+[ 0 1 ]          1e-016          4e-016          3e-016         
+[ 1 0 ]          1e-016          2e-016          1e-016         
+[ 1 1 ]          0               1e-016          1e-016         
+[ 2 0 ]          3.3e-016        1e-016          2.3e-016       
+[ 2 1 ]          1e-016          0               1e-016         
+5 differences found
+EXIT CODE: 1
diff --git a/tools/h5diff/testfiles/h5diff_102w.txt b/tools/h5diff/testfiles/h5diff_102w.txt
index dda3581..19a097c 100644
--- a/tools/h5diff/testfiles/h5diff_102w.txt
+++ b/tools/h5diff/testfiles/h5diff_102w.txt
@@ -1,10 +1,10 @@
-dataset: </g1/fp1> and </g1/fp2>

-size:           [3x2]           [3x2]

-position        fp1             fp2             difference          

-------------------------------------------------------------

-[ 0 1 ]          1e-007          2e-007          1e-007         

-[ 1 0 ]          1e-007          3e-007          2e-007         

-[ 1 1 ]          2.2e-007        1e-007          1.2e-007       

-[ 2 0 ]          1e-007          0               1e-007         

-4 differences found

-EXIT CODE: 1

+dataset: </g1/fp1> and </g1/fp2>
+size:           [3x2]           [3x2]
+position        fp1             fp2             difference          
+------------------------------------------------------------
+[ 0 1 ]          1e-007          2e-007          1e-007         
+[ 1 0 ]          1e-007          3e-007          2e-007         
+[ 1 1 ]          2.2e-007        1e-007          1.2e-007       
+[ 2 0 ]          1e-007          0               1e-007         
+4 differences found
+EXIT CODE: 1
diff --git a/tools/h5diff/testfiles/h5diff_tmp1.txt b/tools/h5diff/testfiles/h5diff_tmp1.txt
new file mode 100644
index 0000000..40e3fb6
--- /dev/null
+++ b/tools/h5diff/testfiles/h5diff_tmp1.txt
@@ -0,0 +1,5 @@
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects.
+EXIT CODE: 0
diff --git a/tools/h5diff/testfiles/h5diff_tmp2.txt b/tools/h5diff/testfiles/h5diff_tmp2.txt
new file mode 100644
index 0000000..a2d6da6
--- /dev/null
+++ b/tools/h5diff/testfiles/h5diff_tmp2.txt
@@ -0,0 +1,13 @@
+dataset: </G/down/Data> and </G/down/Data>
+1599 differences found
+dataset: </G/down/Tail/array> and </G/down/Tail/array>
+8 differences found
+dataset: </G/up/Data> and </G/up/Data>
+1845 differences found
+dataset: </G/up/Tail/array> and </G/up/Tail/array>
+10 differences found
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects.
+EXIT CODE: 1
diff --git a/tools/h5diff/testfiles/tmpSingleSiteBethe.output.h5 b/tools/h5diff/testfiles/tmpSingleSiteBethe.output.h5
new file mode 100644
index 0000000..bbcfb63
--- /dev/null
+++ b/tools/h5diff/testfiles/tmpSingleSiteBethe.output.h5
diff --git a/tools/h5diff/testfiles/tmpSingleSiteBethe.reference.h5 b/tools/h5diff/testfiles/tmpSingleSiteBethe.reference.h5
new file mode 100644
index 0000000..6b19ed7
--- /dev/null
+++ b/tools/h5diff/testfiles/tmpSingleSiteBethe.reference.h5
diff --git a/tools/h5diff/testfiles/tmptest.he5 b/tools/h5diff/testfiles/tmptest.he5
new file mode 100644
index 0000000..edcfcd2
--- /dev/null
+++ b/tools/h5diff/testfiles/tmptest.he5
diff --git a/tools/h5diff/testfiles/tmptest2.he5 b/tools/h5diff/testfiles/tmptest2.he5
new file mode 100644
index 0000000..a6ab02b
--- /dev/null
+++ b/tools/h5diff/testfiles/tmptest2.he5
diff --git a/tools/h5diff/testh5diff.sh.in b/tools/h5diff/testh5diff.sh.in
index 549da49..ee8a09b 100644
--- a/tools/h5diff/testh5diff.sh.in
+++ b/tools/h5diff/testh5diff.sh.in
@@ -302,6 +302,12 @@ $SRC_H5DIFF_TESTFILES/h5diff_709.txt
 $SRC_H5DIFF_TESTFILES/h5diff_710.txt
 $SRC_H5DIFF_TESTFILES/h5diff_80.txt
 $SRC_H5DIFF_TESTFILES/h5diff_90.txt
+$SRC_H5DIFF_TESTFILES/h5diff_tmp1.txt
+$SRC_H5DIFF_TESTFILES/h5diff_tmp2.txt
+$SRC_H5DIFF_TESTFILES/tmptest.he5
+$SRC_H5DIFF_TESTFILES/tmptest2.he5
+$SRC_H5DIFF_TESTFILES/tmpSingleSiteBethe.reference.h5
+$SRC_H5DIFF_TESTFILES/tmpSingleSiteBethe.output.h5
 "
 
 #
@@ -757,6 +763,10 @@ TOOLTEST h5diff_631.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h
 # 7.  attributes
 # ##############################################################################
 TOOLTEST h5diff_70.txt -v h5diff_attr1.h5 h5diff_attr2.h5 
+# temporary test to verify HDF5-8625
+TOOLTEST h5diff_tmp1.txt tmptest2.he5 tmptest.he5
+# temporary test to verify HDF5-8639
+TOOLTEST h5diff_tmp2.txt tmpSingleSiteBethe.output.h5 tmpSingleSiteBethe.reference.h5
 
 # ##################################################
 #  attrs with verbose option level