Split tools into src and test - remove folders

1 files changed, 0 insertions, 1802 deletions

diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
deleted file mode 100644
index 562cfd5..0000000
--- a/tools/h5dump/h5dump.c
+++ /dev/null
@@ -1,1802 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group.                                               *
- * Copyright by the Board of Trustees of the University of Illinois.         *
- * All rights reserved.                                                      *
- *                                                                           *
- * This file is part of HDF5.  The full HDF5 copyright notice, including     *
- * terms governing use, modification, and redistribution, is contained in    *
- * the files COPYING and Copyright.html.  COPYING can be found at the root   *
- * of the source code distribution tree; Copyright.html can be found at the  *
- * root level of an installed copy of the electronic HDF5 document set and   *
- * is linked from the top-level documents page.  It can also be found at     *
- * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
- * access to either file, you may request a copy from help@hdfgroup.org.     *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#include <stdio.h>
-#include <stdlib.h>
-
-#include "h5dump.h"
-#include "h5dump_ddl.h"
-#include "h5dump_xml.h"
-
-/* Name of tool */
-#define PROGRAMNAME "h5dump"
-
-static const char   *driver = NULL;      /* The driver to open the file with. */
-const char          *outfname=NULL;
-static int           doxml = 0;
-static int           useschema = 1;
-static const char   *xml_dtd_uri = NULL;
-
-/* module-scoped variables for XML option */
-#define DEFAULT_XSD     "http://www.hdfgroup.org/HDF5/XML/schema/HDF5-File.xsd"
-#define DEFAULT_DTD     "http://www.hdfgroup.org/HDF5/XML/DTD/HDF5-File.dtd"
-
-/* Standard DDL output */
-static const dump_functions ddl_function_table = {
-    dump_group,
-    dump_named_datatype,
-    dump_dataset,
-    dump_dataspace,
-    dump_datatype,
-    dump_attr_cb,
-    dump_data
-};
-
-/* XML output */
-static const dump_functions xml_function_table = {
-    xml_dump_group,
-    xml_dump_named_datatype,
-    xml_dump_dataset,
-    xml_dump_dataspace,
-    xml_dump_datatype,
-    xml_dump_attr,
-    xml_dump_data
-};
-
-/* internal functions */
-static void     init_prefix(char **prfx, size_t prfx_len);
-
-/* a structure for handling the order command-line parameters come in */
-struct handler_t {
-    void (*func)(hid_t, const char *, void *, int, const char *);
-    char *obj;
-    struct subset_t *subset_info;
-};
-
-/*
- * Command-line options: The user can specify short or long-named
- * parameters. The long-named ones can be partially spelled. When
- * adding more, make sure that they don't clash with each other.
- */
-/* The following initialization makes use of C language cancatenating */
-/* "xxx" "yyy" into "xxxyyy". */
-static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RECM:O*N:vG:";
-static struct long_options l_opts[] = {
-    { "help", no_arg, 'h' },
-    { "hel", no_arg, 'h' },
-    { "contents", optional_arg, 'n' },
-    { "properties", no_arg, 'p' },
-    { "superblock", no_arg, 'B' },
-    { "boot-block", no_arg, 'B' },
-    { "boot-bloc", no_arg, 'B' },
-    { "boot-blo", no_arg, 'B' },
-    { "boot-bl", no_arg, 'B' },
-    { "boot-b", no_arg, 'B' },
-    { "boot", no_arg, 'B' },
-    { "boo", no_arg, 'B' },
-    { "bo", no_arg, 'B' },
-    { "header", no_arg, 'H' },
-    { "heade", no_arg, 'H' },
-    { "head", no_arg, 'H' },
-    { "hea", no_arg, 'H' },
-    { "object-ids", no_arg, 'i' },
-    { "object-id", no_arg, 'i' },
-    { "object-i", no_arg, 'i' },
-    { "object", no_arg, 'i' },
-    { "objec", no_arg, 'i' },
-    { "obje", no_arg, 'i' },
-    { "obj", no_arg, 'i' },
-    { "ob", no_arg, 'i' },
-    { "version", no_arg, 'V' },
-    { "versio", no_arg, 'V' },
-    { "versi", no_arg, 'V' },
-    { "vers", no_arg, 'V' },
-    { "ver", no_arg, 'V' },
-    { "ve", no_arg, 'V' },
-    { "attribute", require_arg, 'a' },
-    { "attribut", require_arg, 'a' },
-    { "attribu", require_arg, 'a' },
-    { "attrib", require_arg, 'a' },
-    { "attri", require_arg, 'a' },
-    { "attr", require_arg, 'a' },
-    { "att", require_arg, 'a' },
-    { "at", require_arg, 'a' },
-    { "block", require_arg, 'k' },
-    { "bloc", require_arg, 'k' },
-    { "blo", require_arg, 'k' },
-    { "bl", require_arg, 'k' },
-    { "count", require_arg, 'c' },
-    { "coun", require_arg, 'c' },
-    { "cou", require_arg, 'c' },
-    { "co", require_arg, 'c' },
-    { "dataset", require_arg, 'd' },
-    { "datase", require_arg, 'd' },
-    { "datas", require_arg, 'd' },
-    { "datatype", require_arg, 't' },
-    { "datatyp", require_arg, 't' },
-    { "dataty", require_arg, 't' },
-    { "datat", require_arg, 't' },
-    { "filedriver", require_arg, 'f' },
-    { "filedrive", require_arg, 'f' },
-    { "filedriv", require_arg, 'f' },
-    { "filedri", require_arg, 'f' },
-    { "filedr", require_arg, 'f' },
-    { "filed", require_arg, 'f' },
-    { "file", require_arg, 'f' },
-    { "fil", require_arg, 'f' },
-    { "fi", require_arg, 'f' },
-    { "group", require_arg, 'g' },
-    { "grou", require_arg, 'g' },
-    { "gro", require_arg, 'g' },
-    { "gr", require_arg, 'g' },
-    { "output", optional_arg, 'o' },
-    { "outpu", optional_arg, 'o' },
-    { "outp", optional_arg, 'o' },
-    { "out", optional_arg, 'o' },
-    { "ou", optional_arg, 'o' },
-    { "soft-link", require_arg, 'l' },
-    { "soft-lin", require_arg, 'l' },
-    { "soft-li", require_arg, 'l' },
-    { "soft-l", require_arg, 'l' },
-    { "soft", require_arg, 'l' },
-    { "sof", require_arg, 'l' },
-    { "start", require_arg, 's' },
-    { "star", require_arg, 's' },
-    { "sta", require_arg, 's' },
-    { "stride", require_arg, 'S' },
-    { "strid", require_arg, 'S' },
-    { "string", no_arg, 'r' },
-    { "strin", no_arg, 'r' },
-    { "use-dtd", no_arg, 'u' },
-    { "use-dt", no_arg, 'u' },
-    { "use-d", no_arg, 'u' },
-    { "use-", no_arg, 'u' },
-    { "use", no_arg, 'u' },
-    { "us", no_arg, 'u' },
-    { "u", no_arg, 'u' },
-    { "width", require_arg, 'w' },
-    { "widt", require_arg, 'w' },
-    { "wid", require_arg, 'w' },
-    { "wi", require_arg, 'w' },
-    { "xml-dtd", require_arg, 'D' },
-    { "xml-dt", require_arg, 'D' },
-    { "xml-d", require_arg, 'D' },
-    { "xml-ns", require_arg, 'X' },
-    { "xml-n", require_arg, 'X' },
-    { "xml", no_arg, 'x' },
-    { "xm", no_arg, 'x' },
-    { "onlyattr", optional_arg, 'A' },
-    { "escape", no_arg, 'e' },
-    { "noindex", no_arg, 'y' },
-    { "binary", optional_arg, 'b' },
-    { "form", require_arg, 'F' },
-    { "sort_by", require_arg, 'q' },
-    { "sort_order", require_arg, 'z' },
-    { "format", require_arg, 'm' },
-    { "region", no_arg, 'R' },
-    { "enable-error-stack", no_arg, 'E' },
-    { "packed-bits", require_arg, 'M' },
-    { "no-compact-subset", no_arg, 'C' },
-    { "ddl", optional_arg, 'O' },
-    { "any_path", require_arg, 'N' },
-    { "vds-view-first-missing", no_arg, 'v' },
-    { "vds-gap-size", require_arg, 'G' },
-    { NULL, 0, '\0' }
-};
-
-
-/*-------------------------------------------------------------------------
- * Function:    leave
- *
- * Purpose:     Shutdown MPI & HDF5 and call exit()
- *
- * Return:      Does not return
- *
- * Programmer:  Quincey Koziol
- *              Saturday, 31. January 2004
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-leave(int ret)
-{
-    h5tools_close();
-
-    HDexit(ret);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:    usage
- *
- * Purpose:     Print the usage message about dumper
- *
- * Return:      void
- *-------------------------------------------------------------------------
- */
-static void
-usage(const char *prog)
-{
-    FLUSHSTREAM(rawoutstream);
-    PRINTSTREAM(rawoutstream, "usage: %s [OPTIONS] files\n", prog);
-    PRINTVALSTREAM(rawoutstream, "  OPTIONS\n");
-    PRINTVALSTREAM(rawoutstream, "     -h,   --help         Print a usage message and exit\n");
-    PRINTVALSTREAM(rawoutstream, "     -V,   --version      Print version number and exit\n");
-    PRINTVALSTREAM(rawoutstream, "--------------- File Options ---------------\n");
-    PRINTVALSTREAM(rawoutstream, "     -n,   --contents     Print a list of the file contents and exit\n");
-    PRINTVALSTREAM(rawoutstream, "                          Optional value 1 also prints attributes.\n");
-    PRINTVALSTREAM(rawoutstream, "     -B,   --superblock   Print the content of the super block\n");
-    PRINTVALSTREAM(rawoutstream, "     -H,   --header       Print the header only; no data is displayed\n");
-    PRINTVALSTREAM(rawoutstream, "     -f D, --filedriver=D Specify which driver to open the file with\n");
-    PRINTVALSTREAM(rawoutstream, "     -o F, --output=F     Output raw data into file F\n");
-    PRINTVALSTREAM(rawoutstream, "     -b B, --binary=B     Binary file output, of form B\n");
-    PRINTVALSTREAM(rawoutstream, "     -O F, --ddl=F        Output ddl text into file F\n");
-    PRINTVALSTREAM(rawoutstream, "                          Use blank(empty) filename F to suppress ddl display\n");
-    PRINTVALSTREAM(rawoutstream, "--------------- Object Options ---------------\n");
-    PRINTVALSTREAM(rawoutstream, "     -a P, --attribute=P  Print the specified attribute\n");
-    PRINTVALSTREAM(rawoutstream, "                          If an attribute name contains a slash (/), escape the\n");
-    PRINTVALSTREAM(rawoutstream, "                          slash with a preceding backslash (\\).\n");
-    PRINTVALSTREAM(rawoutstream, "                          (See example section below.)\n");
-    PRINTVALSTREAM(rawoutstream, "     -d P, --dataset=P    Print the specified dataset\n");
-    PRINTVALSTREAM(rawoutstream, "     -g P, --group=P      Print the specified group and all members\n");
-    PRINTVALSTREAM(rawoutstream, "     -l P, --soft-link=P  Print the value(s) of the specified soft link\n");
-    PRINTVALSTREAM(rawoutstream, "     -t P, --datatype=P   Print the specified named datatype\n");
-    PRINTVALSTREAM(rawoutstream, "     -N P, --any_path=P   Print any attribute, dataset, group, datatype, or link that matches P\n");
-    PRINTVALSTREAM(rawoutstream, "                          P can be the absolute path or just a relative path.\n");
-    PRINTVALSTREAM(rawoutstream, "     -A,   --onlyattr     Print the header and value of attributes\n");
-    PRINTVALSTREAM(rawoutstream, "                          Optional value 0 suppresses printing attributes.\n");
-    PRINTVALSTREAM(rawoutstream, "     --vds-view-first-missing Set the VDS bounds to first missing mapped elements.\n");
-    PRINTVALSTREAM(rawoutstream, "     --vds-gap-size=N     Set the missing file gap size, N=non-negative integers\n");
-    PRINTVALSTREAM(rawoutstream, "--------------- Object Property Options ---------------\n");
-    PRINTVALSTREAM(rawoutstream, "     -i,   --object-ids   Print the object ids\n");
-    PRINTVALSTREAM(rawoutstream, "     -p,   --properties   Print dataset filters, storage layout and fill value\n");
-    PRINTVALSTREAM(rawoutstream, "     -M L, --packedbits=L Print packed bits as unsigned integers, using mask\n");
-    PRINTVALSTREAM(rawoutstream, "                          format L for an integer dataset specified with\n");
-    PRINTVALSTREAM(rawoutstream, "                          option -d. L is a list of offset,length values,\n");
-    PRINTVALSTREAM(rawoutstream, "                          separated by commas. Offset is the beginning bit in\n");
-    PRINTVALSTREAM(rawoutstream, "                          the data value and length is the number of bits of\n");
-    PRINTVALSTREAM(rawoutstream, "                          the mask.\n");
-    PRINTVALSTREAM(rawoutstream, "     -R,   --region       Print dataset pointed by region references\n");
-    PRINTVALSTREAM(rawoutstream, "--------------- Formatting Options ---------------\n");
-    PRINTVALSTREAM(rawoutstream, "     -e,   --escape       Escape non printing characters\n");
-    PRINTVALSTREAM(rawoutstream, "     -r,   --string       Print 1-byte integer datasets as ASCII\n");
-    PRINTVALSTREAM(rawoutstream, "     -y,   --noindex      Do not print array indices with the data\n");
-    PRINTVALSTREAM(rawoutstream, "     -m T, --format=T     Set the floating point output format\n");
-    PRINTVALSTREAM(rawoutstream, "     -q Q, --sort_by=Q    Sort groups and attributes by index Q\n");
-    PRINTVALSTREAM(rawoutstream, "     -z Z, --sort_order=Z Sort groups and attributes by order Z\n");
-    PRINTVALSTREAM(rawoutstream, "     --enable-error-stack Prints messages from the HDF5 error stack as they\n");
-    PRINTVALSTREAM(rawoutstream, "                          occur.\n");
-    PRINTVALSTREAM(rawoutstream, "     --no-compact-subset  Disable compact form of subsetting and allow the use\n");
-    PRINTVALSTREAM(rawoutstream, "                          of \"[\" in dataset names.\n");
-    PRINTVALSTREAM(rawoutstream, "     -w N, --width=N      Set the number of columns of output. A value of 0 (zero)\n");
-    PRINTVALSTREAM(rawoutstream, "                          sets the number of columns to the maximum (65535).\n");
-    PRINTVALSTREAM(rawoutstream, "                          Default width is 80 columns.\n");
-    PRINTVALSTREAM(rawoutstream, "--------------- XML Options ---------------\n");
-    PRINTVALSTREAM(rawoutstream, "     -x,   --xml          Output in XML using Schema\n");
-    PRINTVALSTREAM(rawoutstream, "     -u,   --use-dtd      Output in XML using DTD\n");
-    PRINTVALSTREAM(rawoutstream, "     -D U, --xml-dtd=U    Use the DTD or schema at U\n");
-    PRINTVALSTREAM(rawoutstream, "     -X S, --xml-ns=S     (XML Schema) Use qualified names n the XML\n");
-    PRINTVALSTREAM(rawoutstream, "                          \":\": no namespace, default: \"hdf5:\"\n");
-    PRINTVALSTREAM(rawoutstream, "                          E.g., to dump a file called `-f', use h5dump -- -f\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "--------------- Subsetting Options ---------------\n");
-    PRINTVALSTREAM(rawoutstream, " Subsetting is available by using the following options with a dataset\n");
-    PRINTVALSTREAM(rawoutstream, " option. Subsetting is done by selecting a hyperslab from the data.\n");
-    PRINTVALSTREAM(rawoutstream, " Thus, the options mirror those for performing a hyperslab selection.\n");
-    PRINTVALSTREAM(rawoutstream, " One of the START, COUNT, STRIDE, or BLOCK parameters are mandatory if you do subsetting.\n");
-    PRINTVALSTREAM(rawoutstream, " The STRIDE, COUNT, and BLOCK parameters are optional and will default to 1 in\n");
-    PRINTVALSTREAM(rawoutstream, " each dimension. START is optional and will default to 0 in each dimension.\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      -s START,  --start=START    Offset of start of subsetting selection\n");
-    PRINTVALSTREAM(rawoutstream, "      -S STRIDE, --stride=STRIDE  Hyperslab stride\n");
-    PRINTVALSTREAM(rawoutstream, "      -c COUNT,  --count=COUNT    Number of blocks to include in selection\n");
-    PRINTVALSTREAM(rawoutstream, "      -k BLOCK,  --block=BLOCK    Size of block in hyperslab\n");
-    PRINTVALSTREAM(rawoutstream, "  START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the\n");
-    PRINTVALSTREAM(rawoutstream, "      number of dimensions in the dataspace being queried\n");
-    PRINTVALSTREAM(rawoutstream, "      (Alternate compact form of subsetting is described in the Reference Manual)\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "--------------- Option Argument Conventions ---------------\n");
-    PRINTVALSTREAM(rawoutstream, "  D - is the file driver to use in opening the file. Acceptable values\n");
-    PRINTVALSTREAM(rawoutstream, "      are \"sec2\", \"family\", \"split\", \"multi\", \"direct\", and \"stream\". Without\n");
-    PRINTVALSTREAM(rawoutstream, "      the file driver flag, the file will be opened with each driver in\n");
-    PRINTVALSTREAM(rawoutstream, "      turn and in the order specified above until one driver succeeds\n");
-    PRINTVALSTREAM(rawoutstream, "      in opening the file.\n");
-    PRINTVALSTREAM(rawoutstream, "      See examples below for family, split, and multi driver special file name usage.\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  F - is a filename.\n");
-    PRINTVALSTREAM(rawoutstream, "  P - is the full path from the root group to the object.\n");
-    PRINTVALSTREAM(rawoutstream, "  N - is an integer greater than 1.\n");
-    PRINTVALSTREAM(rawoutstream, "  T - is a string containing the floating point format, e.g '%%.3f'\n");
-    PRINTVALSTREAM(rawoutstream, "  U - is a URI reference (as defined in [IETF RFC 2396],\n");
-    PRINTVALSTREAM(rawoutstream, "        updated by [IETF RFC 2732])\n");
-    PRINTVALSTREAM(rawoutstream, "  B - is the form of binary output: NATIVE for a memory type, FILE for the\n");
-    PRINTVALSTREAM(rawoutstream, "        file type, LE or BE for pre-existing little or big endian types.\n");
-    PRINTVALSTREAM(rawoutstream, "        Must be used with -o (output file) and it is recommended that\n");
-    PRINTVALSTREAM(rawoutstream, "        -d (dataset) is used. B is an optional argument, defaults to NATIVE\n");
-    PRINTVALSTREAM(rawoutstream, "  Q - is the sort index type. It can be \"creation_order\" or \"name\" (default)\n");
-    PRINTVALSTREAM(rawoutstream, "  Z - is the sort order type. It can be \"descending\" or \"ascending\" (default)\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "--------------- Examples ---------------\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  1) Attribute foo of the group /bar_none in file quux.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -a /bar_none/foo quux.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "     Attribute \"high/low\" of the group /bar_none in the file quux.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -a \"/bar_none/high\\/low\" quux.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  2) Selecting a subset from dataset /foo in file quux.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -d /foo -s \"0,1\" -S \"1,1\" -c \"2,3\" -k \"2,2\" quux.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  3) Saving dataset 'dset' in file quux.h5 to binary file 'out.bin'\n");
-    PRINTVALSTREAM(rawoutstream, "        using a little-endian type\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -d /dset -b LE -o out.bin quux.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  4) Display two packed bits (bits 0-1 and bits 4-6) in the dataset /dset\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -d /dset -M 0,1,4,3 quux.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  5) Dataset foo in files file1.h5 file2.h5 file3.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -d /foo file1.h5 file2.h5 file3.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  6) Dataset foo in split files splitfile-m.h5 splitfile-r.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -d /foo -f split splitfile\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  7) Dataset foo in multi files mf-s.h5, mf-b.h5, mf-r.h5, mf-g.h5, mf-l.h5 and mf-o.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -d /foo -f multi mf\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "  8) Dataset foo in family files fam00000.h5 fam00001.h5 and fam00002.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-    PRINTVALSTREAM(rawoutstream, "      h5dump -d /foo -f family fam%%05d.h5\n");
-    PRINTVALSTREAM(rawoutstream, "\n");
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: table_list_add
- *
- * Purpose: Add a new set of tables
- *
- * Return: index of added table on success, -1 on failure
- *
- * Programmer: Neil Fortner, nfortne2@hdfgroup.org
- *             Adapted from trav_addr_add in h5trav.c by Quincey Koziol
- *
- * Date: October 13, 2008
- *
- *-------------------------------------------------------------------------
- */
-ssize_t
-table_list_add(hid_t oid, unsigned long file_no)
-{
-    size_t      idx;         /* Index of table to use */
-    find_objs_t info;
-
-    /* Allocate space if necessary */
-    if(table_list.nused == table_list.nalloc) {
-        h5dump_table_items_t    *tmp_ptr;
-
-        table_list.nalloc = MAX(1, table_list.nalloc * 2);
-        if(NULL == (tmp_ptr = (h5dump_table_items_t *)HDrealloc(table_list.tables, table_list.nalloc * sizeof(table_list.tables[0]))))
-            return -1;
-        table_list.tables = tmp_ptr;
-    } /* end if */
-
-    /* Append it */
-    idx = table_list.nused++;
-    table_list.tables[idx].fileno = file_no;
-    table_list.tables[idx].oid = oid;
-    if(H5Iinc_ref(oid) < 0) {
-        table_list.nused--;
-        return -1;
-    }
-    if(init_objs(oid, &info, &table_list.tables[idx].group_table,
-                 &table_list.tables[idx].dset_table, &table_list.tables[idx].type_table) < 0) {
-        H5Idec_ref(oid);
-        table_list.nused--;
-        return -1;
-    }
-
-#ifdef H5DUMP_DEBUG
-    dump_tables(&info);
-#endif /* H5DUMP_DEBUG */
-
-    return((ssize_t) idx);
-} /* end table_list_add() */
-
-
-/*-------------------------------------------------------------------------
- * Function: table_list_visited
- *
- * Purpose: Check if a table already exists for the specified fileno
- *
- * Return: The index of the matching table, or -1 if no matches found
- *
- * Programmer: Neil Fortner, nfortne2@hdfgroup.org
- *             Adapted from trav_addr_visited in h5trav.c by Quincey Koziol
- *
- * Date: October 13, 2008
- *
- *-------------------------------------------------------------------------
- */
-H5_ATTR_PURE ssize_t
-table_list_visited(unsigned long file_no)
-{
-    size_t u;           /* Local index variable */
-
-    /* Look for table */
-    for(u = 0; u < table_list.nused; u++)
-        /* Check for fileno value already in array */
-        if(table_list.tables[u].fileno == file_no)
-            return((ssize_t) u);
-
-    /* Didn't find table */
-    return(-1);
-} /* end table_list_visited() */
-
-
-/*-------------------------------------------------------------------------
- * Function: table_list_free
- *
- * Purpose: Frees the table list
- *
- * Return: void
- *
- * Programmer: Neil Fortner, nfortne2@hdfgroup.org
- *
- * Date: October 13, 2008
- *
- *-------------------------------------------------------------------------
- */
-static void
-table_list_free(void)
-{
-    size_t u;           /* Local index variable */
-
-    /* Iterate over tables */
-    for(u = 0; u < table_list.nused; u++) {
-        /* Release object id */
-        if(H5Idec_ref(table_list.tables[u].oid) < 0)
-            h5tools_setstatus(EXIT_FAILURE);
-
-        /* Free each table */
-        free_table(table_list.tables[u].group_table);
-        HDfree(table_list.tables[u].group_table);
-        free_table(table_list.tables[u].dset_table);
-        HDfree(table_list.tables[u].dset_table);
-        free_table(table_list.tables[u].type_table);
-        HDfree(table_list.tables[u].type_table);
-    }
-
-    /* Free the table list */
-    HDfree(table_list.tables);
-    table_list.tables = NULL;
-    table_list.nalloc = table_list.nused = 0;
-} /* end table_list_free() */
-
-/*-------------------------------------------------------------------------
- * Function:    set_binary_form
- *
- * Purpose: set the binary form of output by translating from a string input
- *          parameter to a integer return value
- *
- * Return: integer form of binary output or -1 if none found
- *
- * Programmer:  Pedro Vicente Nunes
- *             June 28, 2006
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static int
-set_binary_form(const char *form)
-{
-    int bform = -1;
-
-    if (HDstrcmp(form,"NATIVE") == 0 || HDstrcmp(form,"MEMORY") == 0) {
-        /* native form */
-        bform = 0;
-    }
-    else if (HDstrcmp(form,"FILE") == 0) /* file type form */
-        bform = 1;
-    else if (HDstrcmp(form,"LE") == 0) /* convert to little endian */
-        bform = 2;
-    else if (HDstrcmp(form,"BE") == 0) /* convert to big endian */
-        bform = 3;
-
-    return bform;
-}
-
-/*-------------------------------------------------------------------------
- * Function:    set_sort_by
- *
- * Purpose: set the "by" form of sorting by translating from a string input
- *          parameter to a H5_index_t return value
- *          current sort values are [creation_order | name]
- *
- * Return: H5_index_t form of sort or H5_INDEX_UNKNOWN if none found
- *
- * Programmer:  Pedro Vicente Nunes
- *              October 1, 2007
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static H5_index_t
-set_sort_by(const char *form)
-{
-    H5_index_t idx_type = H5_INDEX_UNKNOWN;
-
-    if (HDstrcmp(form,"name")==0) /* H5_INDEX_NAME */
-        idx_type = H5_INDEX_NAME;
-    else if (HDstrcmp(form,"creation_order")==0) /* H5_INDEX_CRT_ORDER */
-        idx_type = H5_INDEX_CRT_ORDER;
-
-    return idx_type;
-}
-
-/*-------------------------------------------------------------------------
- * Function:    set_sort_order
- *
- * Purpose: set the order of sorting by translating from a string input
- *          parameter to a H5_iter_order_t return value
- *          current order values are [ascending | descending ]
- *
- * Return: H5_iter_order_t form of order or H5_ITER_UNKNOWN if none found
- *
- * Programmer:  Pedro Vicente Nunes
- *              October 1, 2007
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static H5_iter_order_t
-set_sort_order(const char *form)
-{
-    H5_iter_order_t iter_order = H5_ITER_UNKNOWN;
-
-    if (HDstrcmp(form,"ascending")==0) /* H5_ITER_INC */
-        iter_order = H5_ITER_INC;
-    else if (HDstrcmp(form,"descending")==0) /* H5_ITER_DEC */
-        iter_order = H5_ITER_DEC;
-
-    return iter_order;
-}
-
-/*-------------------------------------------------------------------------
- * Function:    parse_hsize_list
- *
- * Purpose:     Parse a list of comma or space separated integers and return
- *              them in a list. The string being passed into this function
- *              should be at the start of the list you want to parse. You are
- *              responsible for freeing the array returned from here.
- *
- *              Lists in the so-called "terse" syntax are separated by
- *              semicolons (;). The lists themselves can be separated by
- *              either commas (,) or white spaces.
- *
- * Return:      <none>
- *
- * Programmer:  Bill Wendling
- *              Tuesday, 6. February 2001
- *
- *-------------------------------------------------------------------------
- */
-static void
-parse_hsize_list(const char *h_list, subset_d *d)
-{
-    hsize_t        *p_list;
-    const char     *ptr;
-    unsigned int    size_count = 0;
-    unsigned int    i = 0;
-    unsigned int    last_digit = 0;
-
-    if (!h_list || !*h_list || *h_list == ';')
-        return;
-
-    /* count how many integers do we have */
-    for (ptr = h_list; ptr && *ptr && *ptr != ';' && *ptr != ']'; ptr++)
-        if (HDisdigit(*ptr)) {
-            if (!last_digit)
-                /* the last read character wasn't a digit */
-                size_count++;
-
-            last_digit = 1;
-        }
-        else
-            last_digit = 0;
-
-    if (size_count == 0)
-        /* there aren't any integers to read */
-        return;
-
-    /* allocate an array for the integers in the list */
-    p_list = (hsize_t *)HDcalloc(size_count, sizeof(hsize_t));
-
-    for (ptr = h_list; i < size_count && ptr && *ptr && *ptr != ';' && *ptr != ']'; ptr++)
-        if(HDisdigit(*ptr)) {
-            /* we should have an integer now */
-            p_list[i++] = (hsize_t)HDstrtoull(ptr, NULL, 0);
-
-            while (HDisdigit(*ptr))
-                /* scroll to end of integer */
-                ptr++;
-        }
-    d->data = p_list;
-    d->len = size_count;
-}
-
-/*-------------------------------------------------------------------------
- * Function:    parse_subset_params
- *
- * Purpose:     Parse the so-called "terse" syntax for specifying subsetting
- *              parameters.
- *
- * Return:      Success:    struct subset_t object
- *              Failure:    NULL
- *
- * Programmer:  Bill Wendling
- *              Tuesday, 6. February 2001
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static struct subset_t *
-parse_subset_params(char *dset)
-{
-    struct subset_t *s = NULL;
-    char   *brace;
-
-    if (!disable_compact_subset && ((brace = HDstrrchr(dset, '[')) != NULL)) {
-        *brace++ = '\0';
-
-        s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t));
-        parse_hsize_list(brace, &s->start);
-
-        while (*brace && *brace != ';')
-            brace++;
-
-        if (*brace) brace++;
-
-        parse_hsize_list(brace, &s->stride);
-
-        while (*brace && *brace != ';')
-            brace++;
-
-        if (*brace) brace++;
-
-        parse_hsize_list(brace, &s->count);
-
-        while (*brace && *brace != ';')
-            brace++;
-
-        if (*brace) brace++;
-
-        parse_hsize_list(brace, &s->block);
-    }
-
-    return s;
-}
-
-/*-------------------------------------------------------------------------
- * Function:    parse_mask_list
- *
- * Purpose:     Parse a list of comma or space separated integers and fill
- *              the packed_bits list and counter. The string being passed into this function
- *              should be at the start of the list you want to parse.
- *
- * Return:      Success:        SUCCEED
- *
- *              Failure:        FAIL
- *
- *-------------------------------------------------------------------------
- */
-static int
-parse_mask_list(const char *h_list)
-{
-    int                soffset_value;
-    unsigned           offset_value;
-    int                slength_value;
-    unsigned           length_value;
-    unsigned long long temp_mask;
-    const char        *ptr = NULL;
-
-    /* sanity check */
-    HDassert(h_list);
-
-    HDmemset(packed_mask,0,sizeof(packed_mask));
-
-    packed_bits_num = 0;
-    /* scan in pair of offset,length separated by commas. */
-    ptr = h_list;
-    while (*ptr) {
-        /* scan for an offset which is an unsigned int */
-        if (!HDisdigit(*ptr)) {
-            error_msg("Bad mask list(%s)\n", h_list);
-            return FAIL;
-        }
-        soffset_value = HDatoi(ptr);
-        offset_value = (unsigned)soffset_value;
-        if (soffset_value < 0 || offset_value >= PACKED_BITS_SIZE_MAX) {
-            error_msg("Packed Bit offset value(%d) must be between 0 and %u\n",
-                    soffset_value, (unsigned)(PACKED_BITS_SIZE_MAX - 1));
-            return FAIL;
-        }
-
-        /* skip to end of integer */
-        while (HDisdigit(*++ptr))
-            ;
-        /* Look for the common separator */
-        if (*ptr++ != ',') {
-            error_msg("Bad mask list(%s), missing expected comma separator.\n", h_list);
-            return FAIL;
-        }
-
-        /* scan for a length which is a positive int */
-        if (!HDisdigit(*ptr)) {
-            error_msg("Bad mask list(%s)\n", h_list);
-            return FAIL;
-        }
-        slength_value = HDatoi(ptr);
-        if (slength_value <= 0) {
-            error_msg("Packed Bit length value(%d) must be positive.\n", slength_value);
-            return FAIL;
-        }
-        length_value = (unsigned)slength_value;
-        if ((offset_value + length_value) > PACKED_BITS_SIZE_MAX) {
-            error_msg("Packed Bit offset+length value(%u) too large. Max is %u\n",
-                       offset_value+length_value, (unsigned)PACKED_BITS_SIZE_MAX);
-            return FAIL;
-        }
-
-        /* skip to end of int */
-        while (HDisdigit(*++ptr))
-            ;
-
-        /* store the offset,length pair */
-        if (packed_bits_num >= PACKED_BITS_MAX) {
-            /* too many requests */
-            error_msg("Too many masks requested (max. %d). Mask list(%s)\n", PACKED_BITS_MAX, h_list);
-            return FAIL;
-        }
-        packed_offset[packed_bits_num] = offset_value;
-        packed_length[packed_bits_num] = length_value;
-        /* create the bit mask by left shift 1's by length, then negate it. */
-        /* After packed_mask is calculated, packed_length is not needed but  */
-        /* keep it for debug purpose. */
-        temp_mask = ~0ULL;
-        if(length_value < (int)(8 *sizeof(unsigned long long))) {
-            temp_mask = temp_mask << length_value;
-            packed_mask[packed_bits_num] = ~temp_mask;
-        }
-        else
-            packed_mask[packed_bits_num] = temp_mask;
-        packed_bits_num++;
-
-        /* skip a possible comma separator */
-        if (*ptr == ',') {
-            if (!(*++ptr)) {
-                /* unexpected end of string */
-                error_msg("Bad mask list(%s), unexpected end of string.\n", h_list);
-                return FAIL;
-            }
-        }
-    }
-    HDassert(packed_bits_num <= PACKED_BITS_MAX);
-    if (packed_bits_num == 0) {
-        /* got no masks! */
-        error_msg("Bad mask list(%s)\n", h_list);
-        return FAIL;
-    }
-    return SUCCEED;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:    free_handler
- *
- * Purpose:     Convenience function to free the handler_t structures. Needs a
- *              length variable (LEN) to know how many in the array it needs
- *              to free
- *
- * Return:      Nothing
- *
- * Programmer:  Bill Wendling
- *              Tuesday, 20. February 2001
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-free_handler(struct handler_t *hand, int len)
-{
-    int i;
-
-    if(hand) {
-        for (i = 0; i < len; i++) {
-            if(hand[i].obj) {
-                HDfree(hand[i].obj);
-                hand[i].obj=NULL;
-            }
-
-            if (hand[i].subset_info) {
-                if(hand[i].subset_info->start.data)
-                    HDfree(hand[i].subset_info->start.data);
-                if(hand[i].subset_info->stride.data)
-                    HDfree(hand[i].subset_info->stride.data);
-                if(hand[i].subset_info->count.data)
-                    HDfree(hand[i].subset_info->count.data);
-                if(hand[i].subset_info->block.data)
-                    HDfree(hand[i].subset_info->block.data);
-
-                HDfree(hand[i].subset_info);
-                hand[i].subset_info=NULL;
-            }
-        }
-
-        HDfree(hand);
-    }
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:    parse_command_line
- *
- * Purpose:     Parse the command line for the h5dumper.
- *
- * Return:      Success:    A pointer to an array of handler_t structures.
- *                          These contain all the information needed to dump
- *                          the necessary object.
- *
- *              Failure:    Exits program with EXIT_FAILURE value.
- *
- * Programmer:  Bill Wendling
- *              Tuesday, 20. February 2001
- *
- * Modifications:
- *  pvn June, 1, 2006. Add a switch for binary output
- *
- *-------------------------------------------------------------------------
- */
-static struct handler_t *
-parse_command_line(int argc, const char *argv[])
-{
-    struct handler_t   *hand = NULL;
-    struct handler_t   *last_dset = NULL;
-    int                 i;
-    int                 opt;
-    int                 last_was_dset = FALSE;
-
-     /* no arguments */
-    if (argc == 1) {
-        usage(h5tools_getprogname());
-        goto error;
-    }
-
-    /* this will be plenty big enough to hold the info */
-    if((hand = (struct handler_t *)HDcalloc((size_t)argc, sizeof(struct handler_t)))==NULL) {
-        goto error;
-    }
-
-    /* parse command line options */
-    while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
-parse_start:
-        switch ((char)opt) {
-        case 'R':
-            display_region = TRUE;
-            region_output = TRUE;
-            break;
-        case 'B':
-            display_bb = TRUE;
-            last_was_dset = FALSE;
-            break;
-        case 'n':
-            display_fi = TRUE;
-            last_was_dset = FALSE;
-            if ( opt_arg != NULL) {
-                h5trav_set_verbose(HDatoi(opt_arg));
-            }
-            break;
-        case 'p':
-            display_dcpl = TRUE;
-            break;
-        case 'y':
-            display_ai = FALSE;
-            break;
-        case 'e':
-            display_escape = TRUE;
-            break;
-        case 'H':
-            display_data = FALSE;
-            display_attr_data = FALSE;
-            last_was_dset = FALSE;
-            break;
-        case 'A':
-            if ( opt_arg != NULL) {
-                if(0 == HDatoi(opt_arg)) include_attrs = FALSE;
-            }
-            else {
-                display_data = FALSE;
-                display_attr_data = TRUE;
-                last_was_dset = FALSE;
-            }
-            break;
-        case 'i':
-            display_oid = TRUE;
-            last_was_dset = FALSE;
-            break;
-        case 'r':
-            display_char = TRUE;
-            break;
-        case 'V':
-            print_version(h5tools_getprogname());
-            free_handler(hand, argc);
-            hand = NULL;
-            h5tools_setstatus(EXIT_SUCCESS);
-            goto done;
-            break;
-        case 'w':
-            {
-                int sh5tools_nCols = HDatoi(opt_arg);
-
-                if (sh5tools_nCols <= 0)
-                    h5tools_nCols = 65535;
-                else
-                    h5tools_nCols = (unsigned)sh5tools_nCols;
-                last_was_dset = FALSE;
-            }
-            break;
-        case 'N':
-            display_all = 0;
-
-            for (i = 0; i < argc; i++)
-                if (!hand[i].func) {
-                    hand[i].func = handle_paths;
-                    hand[i].obj = HDstrdup(opt_arg);
-                    break;
-                }
-
-            last_was_dset = FALSE;
-            break;
-        case 'a':
-            display_all = 0;
-
-            for (i = 0; i < argc; i++)
-                if (!hand[i].func) {
-                    hand[i].func = handle_attributes;
-                    hand[i].obj = HDstrdup(opt_arg);
-                    break;
-                }
-
-            last_was_dset = FALSE;
-            break;
-        case 'd':
-            display_all = 0;
-
-            for (i = 0; i < argc; i++)
-                if (!hand[i].func) {
-                    hand[i].func = handle_datasets;
-                    hand[i].obj = HDstrdup(opt_arg);
-                    hand[i].subset_info = parse_subset_params(hand[i].obj);
-                    last_dset = &hand[i];
-                    break;
-                }
-
-            last_was_dset = TRUE;
-            break;
-        case 'f':
-            driver = opt_arg;
-            break;
-        case 'g':
-            display_all = 0;
-
-            for (i = 0; i < argc; i++)
-                if (!hand[i].func) {
-                    hand[i].func = handle_groups;
-                    hand[i].obj = HDstrdup(opt_arg);
-                    break;
-                }
-
-            last_was_dset = FALSE;
-            break;
-        case 'l':
-            display_all = 0;
-
-            for (i = 0; i < argc; i++)
-                if (!hand[i].func) {
-                    hand[i].func = handle_links;
-                    hand[i].obj = HDstrdup(opt_arg);
-                    break;
-                }
-
-            last_was_dset = FALSE;
-            break;
-        case 't':
-            display_all = 0;
-
-            for (i = 0; i < argc; i++)
-                if (!hand[i].func) {
-                    hand[i].func = handle_datatypes;
-                    hand[i].obj = HDstrdup(opt_arg);
-                    break;
-                }
-
-            last_was_dset = FALSE;
-            break;
-
-        case 'O':
-            if (h5tools_set_output_file(opt_arg, 0) < 0) {
-                usage(h5tools_getprogname());
-                goto error;
-            }
-            break;
-
-        case 'o':
-            if ( bin_output ) {
-                if (h5tools_set_data_output_file(opt_arg, 1) < 0) {
-                    usage(h5tools_getprogname());
-                    goto error;
-                }
-            }
-            else {
-                if(display_attr_data && !display_data) {
-                    if (h5tools_set_attr_output_file(opt_arg, 0) < 0) {
-                        usage(h5tools_getprogname());
-                        goto error;
-                    }
-                }
-                if(display_data || display_all) {
-                    if (h5tools_set_data_output_file(opt_arg, 0) < 0) {
-                        usage(h5tools_getprogname());
-                        goto error;
-                    }
-                }
-            }
-
-            usingdasho = TRUE;
-            last_was_dset = FALSE;
-            outfname = opt_arg;
-            break;
-
-        case 'b':
-            if ( opt_arg != NULL) {
-                if ( ( bin_form = set_binary_form(opt_arg)) < 0) {
-                    /* failed to set binary form */
-                    usage(h5tools_getprogname());
-                    goto error;
-                }
-            }
-            bin_output = TRUE;
-            if (outfname!=NULL) {
-                if (h5tools_set_data_output_file(outfname, 1) < 0)  {
-                    /* failed to set output file */
-                    usage(h5tools_getprogname());
-                    goto error;
-                }
-
-                last_was_dset = FALSE;
-            }
-            break;
-
-        case 'q':
-            if ( ( sort_by = set_sort_by(opt_arg)) < 0) {
-                /* failed to set "sort by" form */
-                usage(h5tools_getprogname());
-                goto error;
-            }
-            break;
-
-        case 'z':
-            if ( ( sort_order = set_sort_order(opt_arg)) < 0) {
-                /* failed to set "sort order" form */
-                usage(h5tools_getprogname());
-                goto error;
-            }
-            break;
-
-        case 'M':
-            if (!last_was_dset) {
-                error_msg("option `-%c' can only be used after --dataset option\n", opt);
-                goto error;
-            }
-            if (parse_mask_list(opt_arg) != SUCCEED){
-                usage(h5tools_getprogname());
-                goto error;
-            }
-            display_packed_bits = TRUE;
-            break;
-        case 'v':
-            display_vds_first = TRUE;
-            break;
-        case 'G':
-            vds_gap_size = HDatoi(opt_arg);
-            if (vds_gap_size < 0) {
-                usage(h5tools_getprogname());
-                goto error;
-            }
-            break;
-
-        /** begin XML parameters **/
-        case 'x':
-            /* select XML output */
-            doxml = TRUE;
-            useschema = TRUE;
-            h5tools_dump_header_format = NULL;
-            dump_function_table = &xml_function_table;
-            h5tools_nCols = 0;
-            break;
-        case 'u':
-            doxml = TRUE;
-            useschema = FALSE;
-            xmlnsprefix = "";
-            h5tools_dump_header_format = NULL;
-            dump_function_table = &xml_function_table;
-            h5tools_nCols = 0;
-            break;
-        case 'D':
-            /* specify alternative XML DTD or schema */
-            /* To Do: check format of this value?  */
-            xml_dtd_uri = opt_arg;
-            h5tools_nCols = 0;
-            break;
-
-        case 'm':
-            /* specify alternative floating point printing format */
-            fp_format = opt_arg;
-            h5tools_nCols = 0;
-            break;
-
-        case 'X':
-            /* specify XML namespace (default="hdf5:"), or none */
-            /* To Do: check format of this value?  */
-            if (!useschema) {
-                usage(h5tools_getprogname());
-                goto error;
-            }
-            if (HDstrcmp(opt_arg,":") == 0)
-                xmlnsprefix = "";
-            else
-                xmlnsprefix = opt_arg;
-            h5tools_nCols = 0;
-            break;
-        /** end XML parameters **/
-
-        /** begin subsetting parameters **/
-        case 's':
-        case 'S':
-        case 'c':
-        case 'k': {
-            struct subset_t *s;
-
-            if (!last_was_dset) {
-                error_msg("option `-%c' can only be used after --dataset option\n", opt);
-                goto error;
-            }
-
-            if (last_dset->subset_info) {
-                /*
-                 * This overrides the "terse" syntax if they actually mixed
-                 * the two.
-                 */
-                s = last_dset->subset_info;
-            }
-            else {
-                last_dset->subset_info = s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t));
-            }
-
-            /*
-             * slightly convoluted, but...we are only interested in options
-             * for subsetting: "--start", "--stride", "--count", and "--block"
-             * which can come in any order. If we run out of parameters (EOF)
-             * or run into one which isn't a subsetting parameter (NOT s, S,
-             * c, or K), then we exit the do-while look, set the subset_info
-             * to the structure we've been filling. If we've reached the end
-             * of the options, we exit the parsing (goto parse_end) otherwise,
-             * since we've "read" the next option, we need to parse it. So we
-             * jump to the beginning of the switch statement (goto parse_start).
-             */
-            do {
-                switch ((char)opt) {
-                case 's':
-                    if (s->start.data) {
-                        HDfree(s->start.data);
-                        s->start.data = NULL;
-                    }
-                    parse_hsize_list(opt_arg, &s->start);
-                    break;
-                case 'S':
-                    if (s->stride.data) {
-                        HDfree(s->stride.data);
-                        s->stride.data = NULL;
-                    }
-                    parse_hsize_list(opt_arg, &s->stride);
-                    break;
-                case 'c':
-                    if (s->count.data) {
-                        HDfree(s->count.data);
-                        s->count.data = NULL;
-                    }
-                    parse_hsize_list(opt_arg, &s->count);
-                    break;
-                case 'k':
-                    if (s->block.data) {
-                        HDfree(s->block.data);
-                        s->block.data = NULL;
-                    }
-                    parse_hsize_list(opt_arg, &s->block);
-                    break;
-                default:
-                    goto end_collect;
-                }
-            } while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF);
-
-end_collect:
-            last_was_dset = FALSE;
-
-            if (opt != EOF)
-                goto parse_start;
-            else
-                goto parse_end;
-        }
-        /** end subsetting parameters **/
-
-        case 'E':
-            enable_error_stack = TRUE;
-            break;
-        case 'C':
-            disable_compact_subset = TRUE;
-            break;
-        case 'h':
-            usage(h5tools_getprogname());
-            free_handler(hand, argc);
-            hand = NULL;
-            h5tools_setstatus(EXIT_SUCCESS);
-            goto done;
-        case '?':
-        default:
-            usage(h5tools_getprogname());
-            goto error;
-        }
-    }
-
-parse_end:
-    /* check for file name to be processed */
-    if (argc <= opt_ind) {
-        error_msg("missing file name\n");
-        usage(h5tools_getprogname());
-        goto error;
-    }
-done:
-    return hand;
-
-error:
-    if (hand) {
-        free_handler(hand, argc);
-        hand = NULL;
-    }
-    h5tools_setstatus(EXIT_FAILURE);
-
-    return hand;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:    main
- *
- * Purpose:     HDF5 dumper
- *
- * Return:      Success:    0
- *              Failure:    1
- *
- * Programmer:  Ruey-Hsia Li
- *
- * Modifications:
- *        Albert Cheng
- *        30. September 2000
- *        Add the -o option--output file for datasets raw data
- *
- *        REMcG
- *        November 2000
- *        Changes to support XML.
- *
- *        Bill Wendling
- *        Wednesday, 10. January 2001
- *        Modified the way command line parameters are interpreted. They go
- *        through one function call now (get_option).
- *
- *        Bill Wendling
- *        Tuesday, 20. February 2001
- *        Moved command line parsing to separate function. Made various
- *        "display_*" flags global.
- *
- *        REMcG
- *        August 2003
- *        Major upgrade to XML support.
- *
- *        Pedro Vicente
- *        September 2007
- *        list objects in requested order (creation order or alphabetically)
- *
- *-------------------------------------------------------------------------
- */
-int
-main(int argc, const char *argv[])
-{
-    hid_t               fid = -1;
-    hid_t               gid = -1;
-    H5E_auto2_t         func;
-    H5E_auto2_t         tools_func;
-    H5O_info_t          oi;
-    struct handler_t   *hand = NULL;
-    int                 i;
-    unsigned            u;
-    void               *edata;
-    void               *tools_edata;
-    char               *fname = NULL;
-
-    h5tools_setprogname(PROGRAMNAME);
-    h5tools_setstatus(EXIT_SUCCESS);
-    h5tools_dump_header_format = &h5tools_standardformat;
-    dump_function_table = &ddl_function_table;
-    dump_indent = 0;
-
-    /* Disable error reporting */
-    H5Eget_auto2(H5E_DEFAULT, &func, &edata);
-    H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
-    /* Initialize h5tools lib */
-    h5tools_init();
-
-    /* Disable tools error reporting */
-    H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
-    H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
-    if((hand = parse_command_line(argc, argv))==NULL) {
-        goto done;
-    }
-
-    if (bin_output && outfname == NULL) {
-        error_msg("binary output requires a file name, use -o <filename>\n");
-        h5tools_setstatus(EXIT_FAILURE);
-        goto done;
-    }
-
-    if (enable_error_stack) {
-        H5Eset_auto2(H5E_DEFAULT, func, edata);
-        H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
-    }
-
-    /* Check for conflicting options */
-    if (doxml) {
-        if (!display_all) {
-            error_msg("option \"%s\" not available for XML\n",
-                    "to display selected objects");
-            h5tools_setstatus(EXIT_FAILURE);
-            goto done;
-        }
-        else if (display_bb) {
-            error_msg("option \"%s\" not available for XML\n", "--boot-block");
-            h5tools_setstatus(EXIT_FAILURE);
-            goto done;
-        }
-        else if (display_oid == 1) {
-            error_msg("option \"%s\" not available for XML\n", "--object-ids");
-            h5tools_setstatus(EXIT_FAILURE);
-            goto done;
-        }
-        else if (display_char == TRUE) {
-            error_msg("option \"%s\" not available for XML\n", "--string");
-            h5tools_setstatus(EXIT_FAILURE);
-            goto done;
-        }
-        else if (usingdasho) {
-            error_msg("option \"%s\" not available for XML\n", "--output");
-            h5tools_setstatus(EXIT_FAILURE);
-            goto done;
-        }
-    }
-    else {
-        if (xml_dtd_uri) {
-            warn_msg("option \"%s\" only applies with XML: %s\n", "--xml-dtd", xml_dtd_uri);
-        }
-    }
-
-    if (argc <= opt_ind) {
-        error_msg("missing file name\n");
-        usage(h5tools_getprogname());
-        h5tools_setstatus(EXIT_FAILURE);
-        goto done;
-    }
-    /* Initialize indexing options */
-    h5trav_set_index(sort_by, sort_order);
-
-    while(opt_ind < argc) {
-        fname = HDstrdup(argv[opt_ind++]);
-
-        fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, driver, NULL, 0);
-
-        if (fid < 0) {
-            error_msg("unable to open file \"%s\"\n", fname);
-            h5tools_setstatus(EXIT_FAILURE);
-            goto done;
-        }
-
-        /* allocate and initialize internal data structure */
-        init_prefix(&prefix, prefix_len);
-
-        /* Prepare to find objects that might be targets of a reference */
-        fill_ref_path_table(fid);
-
-        if(doxml) {
-            /* initialize XML */
-            /* reset prefix! */
-            HDstrcpy(prefix, "");
-
-            /* make sure the URI is initialized to something */
-            if (xml_dtd_uri == NULL) {
-                if (useschema) {
-                    xml_dtd_uri = DEFAULT_XSD;
-                }
-                else {
-                    xml_dtd_uri = DEFAULT_DTD;
-                    xmlnsprefix = "";
-                }
-            }
-            else {
-                if (useschema && HDstrcmp(xmlnsprefix,"")) {
-                    error_msg("Cannot set Schema URL for a qualified namespace--use -X or -U option with -D \n");
-                    h5tools_setstatus(EXIT_FAILURE);
-                    goto done;
-                }
-            }
-        }
-
-        /* Get object info for root group */
-        if(H5Oget_info_by_name(fid, "/", &oi, H5P_DEFAULT) < 0) {
-            error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
-            h5tools_setstatus(EXIT_FAILURE);
-            goto done;
-        }
-
-        /* Initialize object tables */
-        if(table_list_add(fid, oi.fileno) < 0) {
-            error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
-            h5tools_setstatus(EXIT_FAILURE);
-            goto done;
-        }
-        group_table = table_list.tables[0].group_table;
-        dset_table = table_list.tables[0].dset_table;
-        type_table = table_list.tables[0].type_table;
-
-        /* does there exist unamed committed datatype */
-        for (u = 0; u < type_table->nobjs; u++)
-            if (!type_table->objs[u].recorded) {
-                unamedtype = 1;
-                break;
-            } /* end if */
-
-        /* start to dump - display file header information */
-        if (!doxml) {
-            begin_obj(h5tools_dump_header_format->filebegin, fname, h5tools_dump_header_format->fileblockbegin);
-        }
-        else {
-            PRINTVALSTREAM(rawoutstream, "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n");
-
-            /* alternative first element, depending on schema or DTD. */
-            if (useschema) {
-                if (HDstrcmp(xmlnsprefix,"") == 0) {
-                    PRINTSTREAM(rawoutstream, "<HDF5-File xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:noNamespaceSchemaLocation=\"%s\">\n",
-                            xml_dtd_uri);
-                }
-                else {
-                    /*  TO DO: make -url option work in this case (may need new option) */
-                    char *ns;
-                    char *indx;
-
-                    ns = HDstrdup(xmlnsprefix);
-                    indx = HDstrrchr(ns,(int)':');
-                    if (indx) *indx = '\0';
-
-                    PRINTSTREAM(rawoutstream, "<%sHDF5-File xmlns:%s=\"http://hdfgroup.org/HDF5/XML/schema/HDF5-File.xsd\" "
-                            "xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" "
-                            "xsi:schemaLocation=\"http://hdfgroup.org/HDF5/XML/schema/HDF5-File "
-                            "http://www.hdfgroup.org/HDF5/XML/schema/HDF5-File.xsd\">\n",xmlnsprefix,ns);
-                    HDfree(ns);
-                }
-            }
-            else {
-                PRINTSTREAM(rawoutstream, "<!DOCTYPE HDF5-File PUBLIC \"HDF5-File.dtd\" \"%s\">\n", xml_dtd_uri);
-                PRINTVALSTREAM(rawoutstream, "<HDF5-File>\n");
-            }
-        }
-
-        if (!doxml) {
-            if (display_fi) {
-                PRINTVALSTREAM(rawoutstream, "\n");
-                dump_fcontents(fid);
-                end_obj(h5tools_dump_header_format->fileend,h5tools_dump_header_format->fileblockend);
-                PRINTVALSTREAM(rawoutstream, "\n");
-                goto done;
-            }
-
-            if (display_bb)
-                dump_fcpl(fid);
-        }
-
-        if(display_all) {
-            if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) {
-                error_msg("unable to open root group\n");
-                h5tools_setstatus(EXIT_FAILURE);
-            }
-            else {
-                if (!doxml)
-                    dump_indent += COL;
-                dump_function_table->dump_group_function(gid, "/" );
-                if (!doxml)
-                    dump_indent -= COL;
-                PRINTVALSTREAM(rawoutstream, "\n");
-            }
-
-            if(H5Gclose(gid) < 0) {
-                error_msg("unable to close root group\n");
-                h5tools_setstatus(EXIT_FAILURE);
-            }
-
-        }
-        else {
-            /* Note: this option is not supported for XML */
-            if(doxml) {
-                error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
-                h5tools_setstatus(EXIT_FAILURE);
-                goto done;
-            } /* end if */
-
-            for(i = 0; i < argc; i++) {
-                if(hand[i].func) {
-                    hand[i].func(fid, hand[i].obj, hand[i].subset_info, 1, NULL);
-                }
-            }
-            PRINTVALSTREAM(rawoutstream, "\n");
-        }
-
-        if (!doxml) {
-            end_obj(h5tools_dump_header_format->fileend, h5tools_dump_header_format->fileblockend);
-            PRINTVALSTREAM(rawoutstream, "\n");
-        }
-        else {
-            PRINTSTREAM(rawoutstream, "</%sHDF5-File>\n", xmlnsprefix);
-        }
-        /* Free tables for objects */
-        table_list_free();
-
-        if(fid >=0)
-            if (H5Fclose(fid) < 0)
-                h5tools_setstatus(EXIT_FAILURE);
-
-        if(prefix) {
-            HDfree(prefix);
-            prefix = NULL;
-        }
-        if(fname) {
-            HDfree(fname);
-            fname = NULL;
-        }
-    } /* end while */
-
-    if(hand)
-        free_handler(hand, argc);
-
-    /* To Do:  clean up XML table */
-
-    leave(h5tools_getstatus());
-
-done:
-    /* Free tables for objects */
-    table_list_free();
-
-    if(fid >=0)
-        if (H5Fclose(fid) < 0)
-            h5tools_setstatus(EXIT_FAILURE);
-
-    if(prefix) {
-        HDfree(prefix);
-        prefix = NULL;
-    }
-    if(fname) {
-        HDfree(fname);
-        fname = NULL;
-    }
-
-    if(hand)
-        free_handler(hand, argc);
-
-    /* To Do:  clean up XML table */
-
-    H5Eset_auto2(H5E_DEFAULT, func, edata);
-
-    leave(h5tools_getstatus());
-}
-
-/*-------------------------------------------------------------------------
- * Function:    h5_fileaccess
- *
- * Purpose: Returns a file access template which is the default template
- *      but with a file driver set according to the constant or
- *      environment variable HDF5_DRIVER
- *
- * Return:  Success:    A file access property list
- *
- *      Failure:    -1
- *
- * Programmer:  Robb Matzke
- *              Thursday, November 19, 1998
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-hid_t
-h5_fileaccess(void)
-{
-    static const char *multi_letters = "msbrglo";
-    const char  *val = NULL;
-    const char  *name;
-    char         s[1024];
-    hid_t        fapl = -1;
-
-    /* First use the environment variable, then the constant */
-    val = HDgetenv("HDF5_DRIVER");
-#ifdef HDF5_DRIVER
-    if (!val) val = HDF5_DRIVER;
-#endif
-
-    if ((fapl=H5Pcreate(H5P_FILE_ACCESS))<0) return -1;
-    if (!val || !*val) return fapl; /*use default*/
-
-    HDstrncpy(s, val, sizeof s);
-    s[sizeof(s)-1] = '\0';
-    if (NULL==(name=HDstrtok(s, " \t\n\r"))) return fapl;
-
-    if (!HDstrcmp(name, "sec2")) {
-        /* Unix read() and write() system calls */
-        if (H5Pset_fapl_sec2(fapl)<0) return -1;
-    }
-    else if (!HDstrcmp(name, "stdio")) {
-        /* Standard C fread() and fwrite() system calls */
-        if (H5Pset_fapl_stdio(fapl)<0) return -1;
-    }
-    else if (!HDstrcmp(name, "core")) {
-        /* In-core temporary file with 1MB increment */
-        if (H5Pset_fapl_core(fapl, 1024*1024, FALSE)<0) return -1;
-    }
-    else if (!HDstrcmp(name, "split")) {
-        /* Split meta data and raw data each using default driver */
-        if (H5Pset_fapl_split(fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT) < 0)
-            return -1;
-    }
-    else if (!HDstrcmp(name, "multi")) {
-        /* Multi-file driver, general case of the split driver */
-        H5FD_mem_t      memb_map[H5FD_MEM_NTYPES];
-        hid_t           memb_fapl[H5FD_MEM_NTYPES];
-        const char     *memb_name[H5FD_MEM_NTYPES];
-        char            sv[H5FD_MEM_NTYPES][1024];
-        haddr_t         memb_addr[H5FD_MEM_NTYPES];
-        H5FD_mem_t      mt;
-
-        HDmemset(memb_map, 0, sizeof memb_map);
-        HDmemset(memb_fapl, 0, sizeof memb_fapl);
-        HDmemset(memb_name, 0, sizeof memb_name);
-        HDmemset(memb_addr, 0, sizeof memb_addr);
-
-        HDassert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES);
-        for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) {
-            memb_fapl[mt] = H5P_DEFAULT;
-            memb_map[mt] = mt;
-            sprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]);
-            memb_name[mt] = sv[mt];
-            memb_addr[mt] = (haddr_t)MAX(mt - 1, 0) * (HADDR_MAX / 10);
-        }
-
-        if (H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name, memb_addr, FALSE) < 0)
-            return -1;
-    }
-    else if (!HDstrcmp(name, "family")) {
-        hsize_t fam_size = 100*1024*1024; /*100 MB*/
-
-        /* Family of files, each 1MB and using the default driver */
-        if ((val=HDstrtok(NULL, " \t\n\r")))
-            fam_size = (hsize_t)(HDstrtod(val, NULL) * 1024*1024);
-        if (H5Pset_fapl_family(fapl, fam_size, H5P_DEFAULT)<0)
-            return -1;
-    }
-    else if (!HDstrcmp(name, "log")) {
-        long log_flags = H5FD_LOG_LOC_IO;
-
-        /* Log file access */
-        if ((val = HDstrtok(NULL, " \t\n\r")))
-            log_flags = HDstrtol(val, NULL, 0);
-
-        if (H5Pset_fapl_log(fapl, NULL, (unsigned)log_flags, 0) < 0)
-            return -1;
-    }
-    else if (!HDstrcmp(name, "direct")) {
-        /* Substitute Direct I/O driver with sec2 driver temporarily because
-         * some output has sec2 driver as the standard. */
-        if (H5Pset_fapl_sec2(fapl)<0) return -1;
-    }
-    else {
-        /* Unknown driver */
-        return -1;
-    }
-
-    return fapl;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:    init_prefix
- *
- * Purpose:     allocate and initialize prefix
- *
- * Return:      void
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-init_prefix(char **prfx, size_t prfx_len)
-{
-    HDassert(prfx_len > 0);
-    *prfx = (char *)HDcalloc(prfx_len, 1);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function:    add_prefix
- *
- * Purpose:     Add object to prefix
- *
- * Return:      void
- *
- *-------------------------------------------------------------------------
- */
-void
-add_prefix(char **prfx, size_t *prfx_len, const char *name)
-{
-    size_t new_len = HDstrlen(*prfx) + HDstrlen(name) + 2;
-
-    /* Check if we need more space */
-    if(*prfx_len <= new_len) {
-        *prfx_len = new_len + 1;
-        *prfx = (char *)HDrealloc(*prfx, *prfx_len);
-    }
-
-    /* Append object name to prefix */
-    HDstrcat(HDstrcat(*prfx, "/"), name);
-} /* end add_prefix */
-