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authorAllen Byrne <byrn@hdfgroup.org>2012-02-17 21:41:58 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2012-02-17 21:41:58 (GMT)
commitfb762aa6b01d50f18534f447459e0b3557d9fea6 (patch)
tree02f2971dc00028aa32ffc986e10e1fbe04e31bc3 /tools/h5dump/h5dump_xml.c
parent5b03d4b08d4babdc88e0938bd9165c52e0227a51 (diff)
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[svn-r21953] HDDFV-7560: h5dump refactoring
Tested: local linux
Diffstat (limited to 'tools/h5dump/h5dump_xml.c')
-rw-r--r--tools/h5dump/h5dump_xml.c4456
1 files changed, 4456 insertions, 0 deletions
diff --git a/tools/h5dump/h5dump_xml.c b/tools/h5dump/h5dump_xml.c
new file mode 100644
index 0000000..cc16463
--- /dev/null
+++ b/tools/h5dump/h5dump_xml.c
@@ -0,0 +1,4456 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+#include <stdio.h>
+#include <stdlib.h>
+
+#include "H5private.h"
+#include "h5tools.h"
+#include "h5tools_dump.h"
+#include "h5tools_utils.h"
+#include "h5tools_ref.h"
+#include "h5trav.h"
+#include "h5dump_extern.h"
+#include "h5dump_xml.h"
+
+const char *xmlnsprefix="hdf5:";
+
+/* internal functions */
+static int xml_name_to_XID(const char *, char *, int , int );
+
+/* internal functions used by XML option */
+static void xml_print_datatype(hid_t, unsigned);
+static void xml_print_enum(hid_t);
+static int xml_print_refs(hid_t, int);
+static int xml_print_strs(hid_t, int);
+static char *xml_escape_the_string(const char *, int);
+static char *xml_escape_the_name(const char *);
+
+/*-------------------------------------------------------------------------
+ * Function: dump_all_cb
+ *
+ * Purpose: function callback called by H5Literate,
+ * displays everything in the specified object
+ *
+ * Return: Success: SUCCEED
+ *
+ * Failure: FAIL
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ * RMcG, November 2000
+ * Added XML support. Also, optionally checks the op_data argument
+ *
+ * PVN, May 2008
+ * Dump external links
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED *op_data)
+{
+ hid_t obj;
+ herr_t ret = SUCCEED;
+ char *obj_path = NULL; /* Full path of object */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ /* Build the object's path name */
+ obj_path = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ if(!obj_path) {
+ ret = FAIL;
+ goto done;
+ }
+
+ HDstrcpy(obj_path, prefix);
+ HDstrcat(obj_path, "/");
+ HDstrcat(obj_path, name);
+
+ if(linfo->type == H5L_TYPE_HARD) {
+ H5O_info_t oinfo;
+
+ /* Stat the object */
+ if(H5Oget_info_by_name(group, name, &oinfo, H5P_DEFAULT) < 0) {
+ error_msg("unable to get object information for \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ goto done;
+ } /* end if */
+
+ switch(oinfo.type) {
+ case H5O_TYPE_GROUP:
+ if((obj = H5Gopen2(group, name, H5P_DEFAULT)) < 0) {
+ error_msg("unable to dump group \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ char *old_prefix; /* Pointer to previous prefix */
+
+ /* Keep copy of prefix before iterating into group */
+ old_prefix = HDstrdup(prefix);
+ HDassert(old_prefix);
+
+ /* Append group name to prefix */
+ add_prefix(&prefix, &prefix_len, name);
+
+ /* Iterate into group */
+ dump_function_table->dump_group_function(obj, name);
+
+ /* Restore old prefix name */
+ HDstrcpy(prefix, old_prefix);
+ HDfree(old_prefix);
+
+ /* Close group */
+ H5Gclose(obj);
+ }
+ break;
+
+ case H5O_TYPE_DATASET:
+ if((obj = H5Dopen2(group, name, H5P_DEFAULT)) >= 0) {
+ if(oinfo.rc > 1 || hit_elink) {
+ obj_t *found_obj; /* Found object */
+
+ found_obj = search_obj(dset_table, oinfo.addr);
+
+ if(found_obj == NULL) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->datasetbegin, name,
+ h5tools_dump_header_format->datasetblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->datasetblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetblockend);
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ H5Dclose(obj);
+ goto done;
+ }
+ else if(found_obj->displayed) {
+ /* the XML version */
+ char *t_obj_path = xml_escape_the_name(obj_path);
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_name = xml_escape_the_name(name);
+ char *t_objname = xml_escape_the_name(found_obj->objname);
+ char dsetxid[100];
+ char parentxid[100];
+ char pointerxid[100];
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(obj_path, dsetxid, sizeof(dsetxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" "
+ "H5Path=\"%s\" Parents=\"%s\" "
+ "H5ParentPaths=\"%s\">",
+ xmlnsprefix,
+ t_name, /* Dataset Name */
+ dsetxid, get_next_xid(), /* OBJ-XID */
+ t_obj_path, /* H5Path */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>",
+ xmlnsprefix,
+ pointerxid,t_objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataset>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(t_name);
+ HDfree(t_obj_path);
+ HDfree(t_prefix);
+ HDfree(t_objname);
+
+ H5Dclose(obj);
+ goto done;
+ }
+ else {
+ found_obj->displayed = TRUE;
+ }
+ } /* end if */
+
+ dump_function_table->dump_dataset_function(obj, name, NULL);
+ H5Dclose(obj);
+ }
+ else {
+ error_msg("unable to dump dataset \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ break;
+
+ case H5O_TYPE_NAMED_DATATYPE:
+ if((obj = H5Topen2(group, name, H5P_DEFAULT)) < 0) {
+ error_msg("unable to dump datatype \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ dump_function_table->dump_named_datatype_function(obj, name);
+ H5Tclose(obj);
+ }
+ break;
+
+ default:
+ error_msg("unknown object \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ } /* end if */
+ else {
+ char *targbuf;
+
+ switch(linfo->type) {
+ case H5L_TYPE_SOFT:
+ targbuf = (char *)HDmalloc(linfo->u.val_size);
+ HDassert(targbuf);
+
+ if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
+ error_msg("unable to get link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ /* print the value of a soft link */
+ /* XML */
+ char linkxid[100];
+ char parentxid[100];
+ char targetxid[100];
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_name = xml_escape_the_name(name);
+ char *t_targbuf = xml_escape_the_name(targbuf);
+ char *t_obj_path = xml_escape_the_name(obj_path);
+ char *t_link_path;
+ int res;
+
+ t_link_path = (char *)HDmalloc(HDstrlen(prefix) + linfo->u.val_size + 1);
+ if(targbuf[0] == '/')
+ HDstrcpy(t_link_path, targbuf);
+ else {
+ HDstrcpy(t_link_path, prefix);
+ HDstrcat(HDstrcat(t_link_path, "/"), targbuf);
+ } /* end else */
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ /* Try to create an OBJ-XID for the object pointed to */
+ res = xml_name_to_XID(t_link_path, targetxid, sizeof(targetxid), 0);
+ if (res == 0) {
+ /* target obj found */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sSoftLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "TargetPath=\"%s\" TargetObj=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ t_targbuf, /* TargetPath */
+ targetxid, /* TargetObj */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ /* dangling link -- omit from xml attributes */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sSoftLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "TargetPath=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ t_targbuf, /* TargetPath */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(t_targbuf);
+ HDfree(t_obj_path);
+ HDfree(t_link_path);
+ }
+
+ HDfree(targbuf);
+ break;
+
+ case H5L_TYPE_EXTERNAL:
+ targbuf = (char *)HDmalloc(linfo->u.val_size);
+ HDassert(targbuf);
+
+ if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
+ error_msg("unable to get external link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ } /* end if */
+ else {
+ const char *filename;
+ const char *targname;
+
+ if(H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &targname) < 0) {
+ error_msg("unable to unpack external link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ } /* end if */
+ else {
+ char linkxid[100];
+ char parentxid[100];
+ char *t_name = xml_escape_the_name(name);
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_obj_path = xml_escape_the_name(obj_path);
+ char *t_filename = xml_escape_the_name(filename);
+ char *t_targname = xml_escape_the_name(targname);
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sExternalLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "TargetFilename=\"%s\" "
+ "TargetPath=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ filename, /* TargetFilename */
+ targname, /* TargetPath*/
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(t_filename);
+ HDfree(t_targname);
+ HDfree(t_obj_path);
+ } /* end else */
+ } /* end else */
+ HDfree(targbuf);
+ break;
+
+ default:
+ {
+ char linkxid[100];
+ char parentxid[100];
+ char *t_name = xml_escape_the_name(name);
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_obj_path = xml_escape_the_name(obj_path);
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sUserDefined LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "LinkClass=\"%d\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ linfo->type, /* LinkClass */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(t_obj_path);
+ }
+ break;
+ } /* end switch */
+ } /* end else */
+
+done:
+
+ h5tools_str_close(&buffer);
+
+ if(obj_path)
+ HDfree(obj_path);
+ return ret;
+}
+
+/*
+ * create a string suitable for and XML NCNAME. Uses the
+ * object reference to create the string.
+ *
+ * 'gen'; 0 - return null if not found
+ * 1 - generate a fake entry and return fake id.
+ */
+int
+xml_name_to_XID(const char *str , char *outstr, int outlen, int gen)
+{
+ haddr_t objno; /* Object ID for object at path */
+
+ if (outlen < 22) return 1;
+
+ objno = ref_path_table_lookup(str);
+ if (objno == HADDR_UNDEF) {
+ if (HDstrlen(str) == 0) {
+ objno = ref_path_table_lookup("/");
+ if (objno == HADDR_UNDEF) {
+ if (gen) {
+ objno = ref_path_table_gen_fake(str);
+ sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
+ return 0;
+ }
+ else {
+ return 1;
+ }
+ }
+ }
+ else {
+ if (gen) {
+ objno = ref_path_table_gen_fake(str);
+ sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
+ return 0;
+ }
+ else {
+ return 1;
+ }
+ }
+ }
+
+ sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
+
+ return(0);
+}
+
+static const char *quote = "&quot;";
+static const char *amp = "&amp;";
+static const char *lt = "&lt;";
+static const char *gt = "&gt;";
+static const char *apos = "&apos;";
+
+/*-------------------------------------------------------------------------
+ * Function: xml_escape_the_name
+ *
+ * Purpose: Escape XML reserved chars in a name, so HDF5 strings
+ * and paths can be correctly read back in XML element.
+ *
+ * Return: The revised string.
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+xml_escape_the_name(const char *str)
+{
+ size_t extra;
+ size_t len;
+ size_t i;
+ const char *cp;
+ char *ncp;
+ char *rcp;
+
+ if (!str)
+ return NULL;
+
+ cp = str;
+ len = strlen(str);
+ extra = 0;
+
+ for (i = 0; i < len; i++) {
+ if (*cp == '\"') {
+ extra += (strlen(quote) - 1);
+ }
+ else if (*cp == '\'') {
+ extra += (strlen(apos) - 1);
+ }
+ else if (*cp == '<') {
+ extra += (strlen(lt) - 1);
+ }
+ else if (*cp == '>') {
+ extra += (strlen(gt) - 1);
+ }
+ else if (*cp == '&') {
+ extra += (strlen(amp) - 1);
+ }
+
+ cp++;
+ }
+
+ if (extra == 0)
+ return HDstrdup(str);
+
+ cp = str;
+ rcp = ncp = (char *)HDmalloc(len + extra + 1);
+
+ if (!ncp)
+ return NULL; /* ?? */
+
+ for (i = 0; i < len; i++) {
+ if (*cp == '\'') {
+ strncpy(ncp, apos, strlen(apos));
+ ncp += strlen(apos);
+ cp++;
+ }
+ else if (*cp == '<') {
+ strncpy(ncp, lt, strlen(lt));
+ ncp += strlen(lt);
+ cp++;
+ }
+ else if (*cp == '>') {
+ strncpy(ncp, gt, strlen(gt));
+ ncp += strlen(gt);
+ cp++;
+ }
+ else if (*cp == '\"') {
+ strncpy(ncp, quote, strlen(quote));
+ ncp += strlen(quote);
+ cp++;
+ }
+ else if (*cp == '&') {
+ strncpy(ncp, amp, strlen(amp));
+ ncp += strlen(amp);
+ cp++;
+ }
+ else {
+ *ncp++ = *cp++;
+ }
+ }
+
+ *ncp = '\0';
+ return rcp;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_escape_the_string
+ *
+ * Purpose: Escape XML reserved chars in a string, so HDF5 strings
+ * and paths can be correctly read back in XML CDATA.
+ *
+ * Return: The revised string.
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+xml_escape_the_string(const char *str, int slen)
+{
+ size_t extra;
+ size_t len;
+ size_t i;
+ const char *cp;
+ char *ncp;
+ char *rcp;
+
+ if (!str)
+ return NULL;
+
+ cp = str;
+
+ if (slen < 0)
+ len = strlen(str);
+ else
+ len = slen;
+
+ extra = 0;
+
+ for (i = 0; i < len; i++) {
+ if (*cp == '\\') {
+ extra++;
+ }
+ else if (*cp == '\"') {
+ extra++;
+ }
+ else if (*cp == '\'') {
+ extra += (strlen(apos) - 1);
+ }
+ else if (*cp == '<') {
+ extra += (strlen(lt) - 1);
+ }
+ else if (*cp == '>') {
+ extra += (strlen(gt) - 1);
+ }
+ else if (*cp == '&') {
+ extra += (strlen(amp) - 1);
+ }
+ cp++;
+ }
+
+ cp = str;
+ rcp = ncp = (char *) calloc((len + extra + 1), sizeof(char));
+
+ if (ncp == NULL)
+ return NULL; /* ?? */
+
+ for (i = 0; i < len; i++) {
+ if (*cp == '\\') {
+ *ncp++ = '\\';
+ *ncp++ = *cp++;
+ }
+ else if (*cp == '\"') {
+ *ncp++ = '\\';
+ *ncp++ = *cp++;
+ }
+ else if (*cp == '\'') {
+ strncpy(ncp, apos, strlen(apos));
+ ncp += strlen(apos);
+ cp++;
+ }
+ else if (*cp == '<') {
+ strncpy(ncp, lt, strlen(lt));
+ ncp += strlen(lt);
+ cp++;
+ }
+ else if (*cp == '>') {
+ strncpy(ncp, gt, strlen(gt));
+ ncp += strlen(gt);
+ cp++;
+ }
+ else if (*cp == '&') {
+ strncpy(ncp, amp, strlen(amp));
+ ncp += strlen(amp);
+ cp++;
+ }
+ else {
+ *ncp++ = *cp++;
+ }
+ }
+
+ *ncp = '\0';
+ return rcp;
+}
+
+/**
+ ** XML print functions--these replace some functions in the
+ ** h5tools.c suite.
+ **/
+
+/*-------------------------------------------------------------------------
+ * Function: xml_print_datatype
+ *
+ * Purpose: Print description of a datatype in XML.
+ * Note: this is called inside a <DataType> element.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+xml_print_datatype(hid_t type, unsigned in_group)
+{
+ char *mname;
+ hid_t mtype;
+ unsigned nmembers;
+ unsigned ndims;
+ unsigned i;
+ size_t size;
+ hsize_t dims[H5DUMP_MAX_RANK];
+ H5T_str_t str_pad;
+ H5T_cset_t cset;
+ hid_t super;
+ H5T_order_t ord;
+ H5T_sign_t sgn;
+ size_t sz;
+ size_t spos;
+ size_t epos;
+ size_t esize;
+ size_t mpos;
+ size_t msize;
+ int nmembs;
+ htri_t is_vlstr=FALSE;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ if(!in_group && H5Tcommitted(type) > 0) {
+ H5O_info_t oinfo;
+ obj_t *found_obj; /* Found object */
+
+ /* detect a shared datatype, output only once */
+ H5Oget_info(type, &oinfo);
+ found_obj = search_obj(type_table, oinfo.addr);
+
+ if(found_obj) {
+ /* This should be defined somewhere else */
+ /* These 2 cases are handled the same right now, but
+ probably will have something different eventually */
+ char * dtxid = (char *)malloc(100);
+
+ xml_name_to_XID(found_obj->objname, dtxid, 100, 1);
+ if (!found_obj->recorded) {
+ /* 'anonymous' NDT. Use it's object num.
+ as it's name. */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataTypePtr OBJ-XID=\"/%s\"/>",
+ xmlnsprefix, dtxid);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ /* point to the NDT by name */
+ char *t_objname = xml_escape_the_name(found_obj->objname);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>",
+ xmlnsprefix, dtxid, t_objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_objname);
+ }
+ free(dtxid);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- h5dump error: unknown committed type. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ }
+ else {
+
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ /* <hdf5:IntegerType ByteOrder="bo" Sign="torf" Size="bytes"/> */
+ ord = H5Tget_order(type);
+ sgn = H5Tget_sign(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sIntegerType ByteOrder=\"",xmlnsprefix);
+ switch (ord) {
+ case H5T_ORDER_LE:
+ h5tools_str_append(&buffer, "LE");
+ break;
+ case H5T_ORDER_BE:
+ h5tools_str_append(&buffer, "BE");
+ break;
+ case H5T_ORDER_VAX:
+ default:
+ h5tools_str_append(&buffer, "ERROR_UNKNOWN");
+ }
+
+ h5tools_str_append(&buffer, "\" Sign=\"");
+
+ switch (sgn) {
+ case H5T_SGN_NONE:
+ h5tools_str_append(&buffer, "false");
+ break;
+ case H5T_SGN_2:
+ h5tools_str_append(&buffer, "true");
+ break;
+ default:
+ h5tools_str_append(&buffer, "ERROR_UNKNOWN");
+ }
+
+ h5tools_str_append(&buffer, "\" Size=\"");
+ sz = H5Tget_size(type);
+ h5tools_str_append(&buffer, "%lu", (unsigned long)sz);
+ h5tools_str_append(&buffer, "\" />");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_FLOAT:
+ /* <hdf5:FloatType ByteOrder="bo" Size="bytes"
+ SignBitLocation="bytes"
+ ExponentBits="eb" ExponentLocation="el"
+ MantissaBits="mb" MantissaLocation="ml" /> */
+ ord = H5Tget_order(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sFloatType ByteOrder=\"",xmlnsprefix);
+
+ switch (ord) {
+ case H5T_ORDER_LE:
+ h5tools_str_append(&buffer, "LE");
+ break;
+ case H5T_ORDER_BE:
+ h5tools_str_append(&buffer, "BE");
+ break;
+ case H5T_ORDER_VAX:
+ h5tools_str_append(&buffer, "VAX");
+ break;
+ default:
+ h5tools_str_append(&buffer, "ERROR_UNKNOWN");
+ }
+
+ h5tools_str_append(&buffer, "\" Size=\"");
+ sz = H5Tget_size(type);
+ h5tools_str_append(&buffer, "%lu", (unsigned long)sz);
+ H5Tget_fields(type, &spos, &epos, &esize, &mpos, &msize);
+ h5tools_str_append(&buffer, "\" SignBitLocation=\"%lu\" ", (unsigned long)spos);
+ h5tools_str_append(&buffer, "ExponentBits=\"%lu\" ExponentLocation=\"%lu\" ", (unsigned long)esize, (unsigned long)epos);
+ h5tools_str_append(&buffer, "MantissaBits=\"%lu\" MantissaLocation=\"%lu\" />", (unsigned long)msize, (unsigned long)mpos);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_TIME:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sTimeType />",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ h5tools_str_append(&buffer, "<!-- H5T_TIME: not yet implemented -->");
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_STRING:
+ /* <hdf5:StringType Cset="cs" StrSize="chars" StrPad="pad" /> */
+ size = H5Tget_size(type);
+ str_pad = H5Tget_strpad(type);
+ cset = H5Tget_cset(type);
+ is_vlstr = H5Tis_variable_str(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sStringType Cset=\"",xmlnsprefix);
+ if (cset == H5T_CSET_ASCII) {
+ h5tools_str_append(&buffer, "H5T_CSET_ASCII\" ");
+ }
+ else {
+ h5tools_str_append(&buffer, "unknown_cset\" ");
+ }
+ if(is_vlstr)
+ h5tools_str_append(&buffer, "StrSize=\"H5T_VARIABLE\" StrPad=\"");
+ else
+ h5tools_str_append(&buffer, "StrSize=\"%d\" StrPad=\"", (int) size);
+ if (str_pad == H5T_STR_NULLTERM) {
+ h5tools_str_append(&buffer, "H5T_STR_NULLTERM\"/>");
+ }
+ else if (str_pad == H5T_STR_NULLPAD) {
+ h5tools_str_append(&buffer, "H5T_STR_NULLPAD\"/>");
+ }
+ else if (str_pad == H5T_STR_SPACEPAD) {
+ h5tools_str_append(&buffer, "H5T_STR_SPACEPAD\"/>");
+ }
+ else {
+ h5tools_str_append(&buffer, "H5T_STR_ERROR\"/>");
+ }
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_BITFIELD:
+ /* <hdf5:BitfieldType ByteOrder="bo" Size="bytes"/> */
+ ord = H5Tget_order(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sBitfieldType ByteOrder=\"",xmlnsprefix);
+
+ switch (ord) {
+ case H5T_ORDER_LE:
+ h5tools_str_append(&buffer, "LE");
+ break;
+ case H5T_ORDER_BE:
+ h5tools_str_append(&buffer, "BE");
+ break;
+ case H5T_ORDER_VAX:
+ default:
+ h5tools_str_append(&buffer, "ERROR_UNKNOWN");
+ }
+
+ size = H5Tget_size(type);
+ h5tools_str_append(&buffer, "\" Size=\"%lu\"/>", (unsigned long)size);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_OPAQUE:
+ /* <hdf5:OpaqueType Tag="tag" Size="bytes" /> */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ mname = H5Tget_tag(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sOpaqueType Tag=\"%s\" ",xmlnsprefix, mname);
+ free(mname);
+ size = H5Tget_size(type);
+ h5tools_str_append(&buffer, "Size=\"%lu\"/>", (unsigned long)size);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_COMPOUND:
+ /* recursively describe the components of a compound datatype */
+
+ /* type of a dataset */
+ nmembers = H5Tget_nmembers(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sCompoundType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* List each member Field of the type */
+ /* <hdf5:Field FieldName="name" > */
+ /* <hdf5:DataType > */
+ ctx.indent_level++;
+ dump_indent += COL;
+ for (i = 0; i < nmembers; i++) {
+ char *t_fname;
+
+ mname = H5Tget_member_name(type, i);
+ mtype = H5Tget_member_type(type, i);
+ t_fname = xml_escape_the_name(mname);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sField FieldName=\"%s\">",xmlnsprefix, t_fname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ free(mname);
+ free(t_fname);
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+ xml_print_datatype(mtype,0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sField>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sCompoundType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_REFERENCE:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ /* Only Object references supported at this time */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sReferenceType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sObjectReferenceType />",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sReferenceType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_ENUM:
+ /* <hdf5:EnumType Nelems="ne" > list Name, values of enum */
+ nmembs = H5Tget_nmembers(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sEnumType Nelems=\"%d\">",xmlnsprefix, nmembs);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ xml_print_enum(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sEnumType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_VLEN:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sVLType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ super = H5Tget_super(type);
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent += COL;
+ ctx.indent_level++;
+ xml_print_datatype(super,0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sVLType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ H5Tclose(super);
+
+ break;
+
+ case H5T_ARRAY:
+ /* Get array base type */
+ super = H5Tget_super(type);
+
+ /* Print lead-in */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sArrayType Ndims=\"",xmlnsprefix);
+ ndims = H5Tget_array_ndims(type);
+ h5tools_str_append(&buffer, "%u\">", ndims);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* Get array information */
+ H5Tget_array_dims2(type, dims);
+
+ /* list of dimensions */
+ ctx.indent_level++;
+ for (i = 0; i < ndims; i++) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sArrayDimension DimSize=\"%u\"/>", xmlnsprefix, (int) dims[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ ctx.indent_level--;
+
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent += COL;
+ ctx.indent_level++;
+ xml_print_datatype(super,0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sArrayType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ /* Close array base type */
+ H5Tclose(super);
+ break;
+
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- unknown datatype -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ h5tools_setstatus(EXIT_FAILURE);
+ break;
+ }
+ } /* end else */
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_datatype
+ *
+ * Purpose: Dump description of a datatype in XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_datatype(hid_t type)
+{
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if(H5Tcommitted(type) > 0) {
+ H5O_info_t oinfo;
+ obj_t *found_obj; /* Found object */
+
+ /* Datatype is a shared or named datatype */
+ H5Oget_info(type, &oinfo);
+ found_obj = search_obj(type_table, oinfo.addr);
+
+ if(found_obj) {
+ /* Shared datatype, must be entered as an object */
+ /* These 2 cases are the same now, but may change */
+ char *dtxid = (char *)malloc(100);
+
+ xml_name_to_XID(found_obj->objname, dtxid, 100, 1);
+ if (!found_obj->recorded) {
+ /* anonymous stored datatype:
+ following the dumper's current
+ practice:
+ use it's object ref as its name
+ */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataTypePtr OBJ-XID=\"%s\"/>",
+ xmlnsprefix, dtxid);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ /* pointer to a named datatype already in XML */
+ char *t_objname = xml_escape_the_name(found_obj->objname);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\" />",
+ xmlnsprefix, dtxid, t_objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_objname);
+ }
+ free(dtxid);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- h5dump error: unknown committed type. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+ xml_print_datatype(type, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_dataspace
+ *
+ * Purpose: Dump description of a dataspace in XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_dataspace(hid_t space)
+{
+ hsize_t size[H5DUMP_MAX_RANK];
+ hsize_t maxsize[H5DUMP_MAX_RANK];
+ int i;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
+ H5S_class_t space_type = H5Sget_simple_extent_type(space);
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataspace>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ switch (space_type) {
+ case H5S_SCALAR:
+ /* scalar dataspace (just a tag, no XML attrs. defined */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sScalarDataspace />",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5S_SIMPLE:
+ /* simple dataspace */
+ /* <hdf5:SimpleDataspace Ndims="nd"> */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sSimpleDataspace Ndims=\"%d\">",xmlnsprefix, ndims);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* print the <hdf5:Dimension> elements */
+ ctx.indent_level++;
+ for (i = 0; i < ndims; i++) {
+ if (maxsize[i] == H5S_UNLIMITED) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDimension DimSize=\"%lu\" MaxDimSize=\"UNLIMITED\"/>",
+ xmlnsprefix,size[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else if (maxsize[i] == (hsize_t) 0) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDimension DimSize=\"%lu\" MaxDimSize=\"%lu\"/>",
+ xmlnsprefix,size[i], size[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDimension DimSize=\"%lu\" MaxDimSize=\"%lu\"/>",
+ xmlnsprefix, size[i], maxsize[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ }
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sSimpleDataspace>", xmlnsprefix );
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+#ifdef TMP
+ /* Commented out: wait until the schema is updated first */
+ case H5S_NULL:
+ /* null dataspace (just a tag, no XML attrs. defined */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNullDataspace />",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+#endif /* TMP */
+
+ case H5S_NO_CLASS:
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- unknown dataspace -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataspace>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_data
+ *
+ * Purpose: Dump description of data in XML.
+ * Note that this calls the h5dump_xxx calls in
+ * the h5tools library.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNUSED pindex)
+{
+ hid_t space = -1;
+ hid_t type = -1;
+ hid_t p_type = -1;
+ hsize_t size[64];
+ hsize_t nelmts = 1;
+ int ndims;
+ int i;
+ int depth;
+ int status = -1;
+ int stdindent = COL; /* should be 3 */
+ void *buf = NULL;
+ hsize_t curr_pos = 0; /* total data element position */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+
+ HDmemset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ /* Print all the values. */
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+ string_dataformat.cmpd_sep = " ";
+ string_dataformat.cmpd_pre = "";
+ string_dataformat.cmpd_suf = "";
+ string_dataformat.cmpd_end = "";
+ string_dataformat.arr_linebreak = 0;
+ string_dataformat.arr_pre = "";
+ outputformat = &string_dataformat;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ if (obj_data == DATASET_DATA) {
+ type = H5Dget_type(obj_id);
+ if (H5Tget_class(type) == H5T_REFERENCE) {
+ status = xml_print_refs(obj_id, DATASET_DATA);
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
+ status = xml_print_strs(obj_id, DATASET_DATA);
+ }
+ else {
+ h5tools_context_t datactx;
+ memset(&datactx, 0, sizeof(datactx));
+ datactx.need_prefix = TRUE;
+ datactx.indent_level = ctx.indent_level;
+ datactx.cur_column = ctx.cur_column;
+ status = h5tools_dump_dset(stdout, outputformat, &datactx, obj_id, -1, NULL);
+ }
+ }
+ else {
+ /* Attribute data */
+ type = H5Aget_type(obj_id);
+
+ if (H5Tget_class(type) == H5T_REFERENCE) {
+ /* references are done differently than
+ the standard output:
+ XML dumps a path to the object
+ referenced.
+ */
+ status = xml_print_refs(obj_id, ATTRIBUTE_DATA);
+ H5Tclose(type);
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
+ status = xml_print_strs(obj_id, ATTRIBUTE_DATA);
+ }
+ else { /* all other data */
+ /* VL data special information */
+ unsigned int vl_data = 0; /* contains VL datatypes */
+
+ p_type = h5tools_get_native_type(type);
+
+ /* Check if we have VL data in the dataset's datatype */
+ if (h5tools_detect_vlen_str(p_type) == TRUE)
+ vl_data = TRUE;
+ if (H5Tdetect_class(p_type, H5T_VLEN) == TRUE)
+ vl_data = TRUE;
+
+ H5Tclose(type);
+
+ space = H5Aget_space(obj_id);
+
+ ndims = H5Sget_simple_extent_dims(space, size, NULL);
+
+ for (i = 0; i < ndims; i++)
+ nelmts *= size[i];
+
+ buf = malloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type))));
+ assert(buf);
+
+ if (H5Aread(obj_id, p_type, buf) >= 0) {
+ h5tools_context_t datactx;
+ memset(&datactx, 0, sizeof(datactx));
+ datactx.need_prefix = TRUE;
+ datactx.indent_level = ctx.indent_level;
+ datactx.cur_column = ctx.cur_column;
+ status = h5tools_dump_mem(stdout, outputformat, &datactx, obj_id, p_type, space, buf);
+ }
+ /* Reclaim any VL memory, if necessary */
+ if (vl_data)
+ H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf);
+
+ free(buf);
+ H5Tclose(p_type);
+ H5Sclose(space);
+ H5Tclose(type);
+ }
+ }
+
+ if (status == FAIL) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "Unable to print data.");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ status = 1;
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_attr
+ *
+ * Purpose: Dump a description of an HDF5 attribute in XML.
+ *
+ * Return: herr_t
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t UNUSED *info,
+ void UNUSED * op_data)
+{
+ hid_t attr_id = -1;
+ hid_t type = -1;
+ hid_t space = -1;
+ H5S_class_t space_type;
+ hsize_t curr_pos = 0; /* total data element position */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+
+ char *t_aname = xml_escape_the_name(attr_name);
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAttribute Name=\"%s\">", xmlnsprefix, t_aname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_aname);
+
+ if ((attr_id = H5Aopen(attr, attr_name, H5P_DEFAULT)) >= 0) {
+ type = H5Aget_type(attr_id);
+ space = H5Aget_space(attr_id);
+ space_type = H5Sget_simple_extent_type(space);
+
+ dump_function_table->dump_dataspace_function(space);
+ dump_function_table->dump_datatype_function(type);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if (display_attr_data && space_type != H5S_NULL) {
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ case H5T_ENUM:
+ case H5T_ARRAY:
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
+
+ case H5T_TIME:
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Time data not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<hdf5:Data>");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+ break;
+
+ case H5T_COMPOUND:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: format of compound data not specified -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
+
+ case H5T_REFERENCE:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: Region references not supported -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ xml_print_refs(attr_id, ATTRIBUTE_DATA);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_VLEN:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: format of VL data not specified -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Unknown datatype: %d -->", H5Tget_class(type));
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ }
+ }
+ else {
+ /* The case of an attribute never yet written ??
+ * Or dataspace is H5S_NULL. */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ H5Tclose(type);
+ H5Sclose(space);
+ H5Aclose(attr_id);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAttribute>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+ return SUCCEED;
+ }
+ else {
+ /* ?? failed */
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- h5dump error: unable to open attribute. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAttribute>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+
+ h5tools_setstatus(EXIT_FAILURE);
+ return FAIL;
+ }
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_named_datatype
+ *
+ * Purpose: Dump a description of an HDF5 NDT in XML.
+ *
+ * Return: herr_t
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_named_datatype(hid_t type, const char *name)
+{
+ hsize_t curr_pos = 0; /* total data element position */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ char *tmp;
+ char *dtxid;
+ char *parentxid;
+ char *t_tmp;
+ char *t_prefix;
+ char *t_name;
+
+ tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
+ HDstrcat(tmp, "/");
+ HDstrcat(tmp, name);
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ dtxid = (char *)HDmalloc(100);
+ parentxid = (char *)HDmalloc(100);
+ t_tmp = xml_escape_the_name(tmp);
+ t_prefix = xml_escape_the_name(prefix);
+ t_name = xml_escape_the_name(name);
+
+ xml_name_to_XID(tmp, dtxid, 100, 1);
+ xml_name_to_XID(prefix, parentxid, 100, 1);
+ if(HDstrncmp(name, "#", 1) == 0) {
+ /* Special: this is an 'anonymous' NDT, deleted but
+ still in use.
+ We follow the dumper's undocumented practice, and
+ use its object id as its name.
+ Exactly the same as normal, but a separate case
+ in the event we want to do something else in
+ the future.
+ */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\">",
+ xmlnsprefix,
+ name, dtxid,
+ parentxid, HDstrcmp(prefix,"") ? t_prefix : "/");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ H5O_info_t oinfo; /* Object info */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
+ "H5Path=\"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">",
+ xmlnsprefix,
+ t_name, dtxid,
+ t_tmp, parentxid, (HDstrcmp(prefix, "") ? t_prefix : "/"));
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* Check uniqueness of named datatype */
+ H5Oget_info(type, &oinfo);
+ if(oinfo.rc > 1) {
+ obj_t *found_obj; /* Found object */
+
+ /* Group with more than one link to it... */
+ found_obj = search_obj(type_table, oinfo.addr);
+
+ if (found_obj == NULL) {
+ indentation(dump_indent);
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ else if(found_obj->displayed) {
+ /* We have already printed this named datatype, print it as a
+ * NamedDatatypePtr
+ */
+ char pointerxid[100];
+ char *t_objname = xml_escape_the_name(found_obj->objname);
+
+ ctx.indent_level++;
+
+ xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDatatypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>", xmlnsprefix, pointerxid, t_objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sNamedDataType>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ HDfree(t_objname);
+ goto done;
+ }
+ else
+ found_obj->displayed = TRUE;
+ }
+ }
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+ xml_print_datatype(type,1);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sNamedDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+done:
+
+ h5tools_str_close(&buffer);
+
+ HDfree(dtxid);
+ HDfree(parentxid);
+ HDfree(t_tmp);
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(tmp);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_group
+ *
+ * Purpose: Dump a description of an HDF5 Group (and its members) in XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ * Pedro Vicente, October 9, 2007
+ * added parameters to H5A(L)iterate to allow for other iteration orders
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_group(hid_t gid, const char *name)
+{
+ H5O_info_t oinfo;
+ hid_t gcpl_id;
+ hid_t dset, type;
+ unsigned crt_order_flags;
+ unsigned attr_crt_order_flags;
+ int isRoot = 0;
+ char type_name[1024];
+ char *t_objname = NULL;
+ char *par_name = NULL;
+ char *cp = NULL;
+ char *tmp = NULL;
+ char *par = NULL;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
+ error_msg("error in getting group creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* query the group creation properties for attributes */
+ if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0) {
+ error_msg("error in getting group creation properties\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* query the group creation properties */
+ if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0) {
+ error_msg("error in getting group creation properties\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ if(H5Pclose(gcpl_id) < 0) {
+ error_msg("error in closing group creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ if(HDstrcmp(name, "/") == 0) {
+ isRoot = 1;
+ tmp = HDstrdup("/");
+ }
+ else {
+ tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
+ par = HDstrdup(tmp);
+ cp = HDstrrchr(par, '/');
+ if(cp) {
+ if((cp == par) && HDstrlen(par) > 1)
+ *(cp + 1) = '\0';
+ else
+ *cp = '\0';
+ }
+ }
+
+ H5Oget_info(gid, &oinfo);
+
+ if(oinfo.rc > 1) {
+ obj_t *found_obj; /* Found object */
+
+ /* Group with more than one link to it... */
+ found_obj = search_obj(group_table, oinfo.addr);
+
+ if (found_obj == NULL) {
+ indentation(dump_indent);
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ else {
+ char *t_name = xml_escape_the_name(name);
+ char *grpxid = (char *)malloc(100);
+ char *parentxid = (char *)malloc(100);
+
+ if(found_obj->displayed) {
+ char *ptrstr = (char *)malloc(100);
+
+ /* already seen: enter a groupptr */
+ if(isRoot) {
+ /* probably can't happen! */
+ xml_name_to_XID("/", grpxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">",
+ xmlnsprefix, grpxid, "/");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ t_objname = xml_escape_the_name(found_obj->objname);
+ par_name = xml_escape_the_name(par);
+ xml_name_to_XID(tmp, grpxid, 100, 1);
+ xml_name_to_XID(par, parentxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sGroup Name=\"%s\" OBJ-XID=\"%s-%d\" H5Path=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\">",
+ xmlnsprefix,t_name, grpxid, get_next_xid(),
+ t_objname, parentxid, par_name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_objname);
+ free(par_name);
+
+ ctx.indent_level++;
+
+ t_objname = xml_escape_the_name(found_obj->objname);/* point to the NDT by name */
+ par_name = xml_escape_the_name(par);
+ xml_name_to_XID(found_obj->objname, ptrstr, 100, 1);
+ xml_name_to_XID(par, parentxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sGroupPtr OBJ-XID=\"%s\" H5Path=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ ptrstr, t_objname, parentxid, par_name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ free(t_objname);
+ free(par_name);
+ }
+ free(ptrstr);
+ }
+ else {
+
+ /* first time this group has been seen -- describe it */
+ if(isRoot) {
+ xml_name_to_XID("/", grpxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">",
+ xmlnsprefix, grpxid, "/");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ char *t_tmp = xml_escape_the_name(tmp);
+
+ par_name = xml_escape_the_name(par);
+ xml_name_to_XID(tmp, grpxid, 100, 1);
+ xml_name_to_XID(par, parentxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" >",
+ xmlnsprefix,t_name, grpxid, t_tmp, parentxid, par_name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ free(t_tmp);
+ free(par_name);
+ }
+ found_obj->displayed = TRUE;
+
+ /* 1. do all the attributes of the group */
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ if(isRoot && unamedtype) {
+ unsigned u;
+
+ /* Very special case: dump unamed type in root group */
+ for(u = 0; u < type_table->nobjs; u++) {
+ if(!type_table->objs[u].recorded) {
+ dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
+ type = H5Dget_type(dset);
+ sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
+ dump_function_table->dump_named_datatype_function(type, type_name);
+ H5Tclose(type);
+ H5Dclose(dset);
+ }
+ }
+ }
+
+ /* iterate through all the links */
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
+ H5Literate(gid, sort_by, sort_order, NULL, xml_dump_all_cb, NULL);
+ else
+ H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, xml_dump_all_cb, NULL);
+
+ dump_indent -= COL;
+ ctx.indent_level--;
+ }
+ free(t_name);
+ free(grpxid);
+ free(parentxid);
+ }
+ }
+ else {
+ /* only link -- must be first time! */
+ char *t_name = xml_escape_the_name(name);
+ char *grpxid = (char *)malloc(100);
+ char *parentxid = (char *)malloc(100);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+
+ if(isRoot) {
+ xml_name_to_XID("/", grpxid, 100, 1);
+ h5tools_str_append(&buffer, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">", xmlnsprefix, grpxid, "/");
+ }
+ else {
+ char *t_tmp = xml_escape_the_name(tmp);
+
+ par_name = xml_escape_the_name(par);
+ xml_name_to_XID(tmp, grpxid, 100, 1);
+ xml_name_to_XID(par, parentxid, 100, 1);
+ h5tools_str_append(&buffer, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" >",
+ xmlnsprefix, t_name, grpxid, t_tmp, parentxid, par_name);
+ free(t_tmp);
+ free(par_name);
+ }
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ free(t_name);
+ free(grpxid);
+ free(parentxid);
+
+ /* 1. do all the attributes of the group */
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ if(isRoot && unamedtype) {
+ unsigned u;
+
+ /* Very special case: dump unamed type in root group */
+ for(u = 0; u < type_table->nobjs; u++) {
+ if(!type_table->objs[u].recorded) {
+ dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
+ type = H5Dget_type(dset);
+ sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
+ dump_function_table->dump_named_datatype_function(type, type_name);
+ H5Tclose(type);
+ H5Dclose(dset);
+ }
+ }
+ }
+
+ /* iterate through all the links */
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
+ H5Literate(gid, sort_by, sort_order, NULL, xml_dump_all_cb, NULL);
+ else
+ H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, xml_dump_all_cb, NULL);
+
+ dump_indent -= COL;
+ ctx.indent_level--;
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(isRoot)
+ h5tools_str_append(&buffer, "</%sRootGroup>", xmlnsprefix);
+ else
+ h5tools_str_append(&buffer, "</%sGroup>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+
+ if(par)
+ free(par);
+ if(tmp)
+ free(tmp);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_print_refs
+ *
+ * Purpose: Print a path to the objects referenced by HDF5 Referneces.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+xml_print_refs(hid_t did, int source)
+{
+ herr_t e;
+ hid_t type;
+ hid_t space;
+ hssize_t ssiz;
+ hsize_t i;
+ size_t tsiz;
+ hobj_ref_t *refbuf = NULL;
+ char *buf = NULL;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ if (source == DATASET_DATA) {
+ type = H5Dget_type(did);
+ }
+ else if (source == ATTRIBUTE_DATA) {
+ type = H5Aget_type(did);
+ }
+ else {
+ /* return an error */
+ return FAIL;
+ }
+ if (H5Tget_class(type) != H5T_REFERENCE) {
+ /* return an error */
+ goto error;
+ }
+ if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
+ /* region ref not supported yet... */
+ /* return an error */
+ goto error;
+ }
+ if (source == DATASET_DATA) {
+ space = H5Dget_space(did);
+ if ((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
+ goto error;
+ if ((tsiz = H5Tget_size(type)) == 0)
+ goto error;
+
+ buf = (char *) calloc((size_t)(ssiz * tsiz), sizeof(char));
+ if (buf == NULL)
+ goto error;
+ e = H5Dread(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+ /* need to check result here */
+ if (e < 0) {
+ goto error;
+ }
+ }
+ else if (source == ATTRIBUTE_DATA) {
+ space = H5Aget_space(did);
+ if ((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
+ goto error;
+ if ((tsiz = H5Tget_size(type)) == 0)
+ goto error;
+
+ buf = (char *) calloc((size_t)(ssiz * tsiz), sizeof(char));
+ if (buf == NULL) {
+ goto error;
+ }
+ e = H5Aread(did, H5T_STD_REF_OBJ, buf);
+ /* need to check the result here */
+ if (e < 0) {
+ goto error;
+ }
+ }
+
+ refbuf = (hobj_ref_t *) buf;
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ for (i = 0; i < ssiz; i++) {
+ const char *path = lookup_ref_path(*refbuf);
+ ctx.indent_level++;
+
+ if (!path) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", "NULL");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ char *t_path = xml_escape_the_string(path, -1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", t_path);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_path);
+ }
+ ctx.indent_level--;
+
+ refbuf++;
+ }
+
+ h5tools_str_close(&buffer);
+
+ free(buf);
+ H5Tclose(type);
+ H5Sclose(space);
+ return SUCCEED;
+
+error:
+ if(buf)
+ free(buf);
+
+ H5E_BEGIN_TRY {
+ H5Tclose(type);
+ H5Sclose(space);
+ } H5E_END_TRY;
+ return FAIL;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_print_strs
+ *
+ * Purpose: Print strings.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+xml_print_strs(hid_t did, int source)
+{
+ herr_t e;
+ hid_t type;
+ hid_t space;
+ hssize_t ssiz;
+ htri_t is_vlstr = FALSE;
+ size_t tsiz;
+ size_t i;
+ size_t str_size = 0;
+ char *bp = NULL;
+ char *onestring = NULL;
+ void *buf = NULL;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ if (source == DATASET_DATA) {
+ type = H5Dget_type(did);
+ }
+ else if (source == ATTRIBUTE_DATA) {
+ type = H5Aget_type(did);
+ }
+ else {
+ /* return an error */
+ return FAIL;
+ }
+ if (H5Tget_class(type) != H5T_STRING) {
+ /* return an error */
+ goto error;
+ }
+ /* Check if we have VL data in the dataset's datatype */
+ is_vlstr = H5Tis_variable_str(type);
+
+ if (source == DATASET_DATA) {
+ space = H5Dget_space(did);
+ if((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
+ goto error;
+ if((tsiz = H5Tget_size(type)) == 0)
+ goto error;
+
+ buf = malloc((size_t)(ssiz * tsiz));
+ if (buf == NULL)
+ goto error;
+
+ e = H5Dread(did, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+ if (e < 0) {
+ goto error;
+ }
+ }
+ else if (source == ATTRIBUTE_DATA) {
+ space = H5Aget_space(did);
+ if((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
+ goto error;
+ if((tsiz = H5Tget_size(type)) == 0)
+ goto error;
+
+ buf = malloc((size_t)(ssiz * tsiz));
+ if (buf == NULL)
+ goto error;
+
+ e = H5Aread(did, type, buf);
+ if (e < 0) {
+ goto error;
+ }
+ }
+
+ bp = (char*) buf;
+ if (!is_vlstr)
+ onestring = (char *) calloc(tsiz, sizeof(char));
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ for (i = 0; i < ssiz; i++) {
+ if (is_vlstr) {
+ onestring = *(char **) bp;
+ if (onestring)
+ str_size = (size_t) HDstrlen(onestring);
+ }
+ else {
+ HDstrncpy(onestring, bp, tsiz);
+ str_size = tsiz;
+ }
+
+ if (!onestring) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "NULL");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ char *t_onestring = xml_escape_the_string(onestring, (int) str_size);
+ if (t_onestring) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", t_onestring);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_onestring);
+ }
+ }
+ bp += tsiz;
+ }
+
+ h5tools_str_close(&buffer);
+
+ /* Reclaim any VL memory, if necessary */
+ if (!is_vlstr)
+ if (onestring)
+ free(onestring);
+ if (buf) {
+ if (is_vlstr)
+ H5Dvlen_reclaim(type, space, H5P_DEFAULT, buf);
+ free(buf);
+ }
+ H5Tclose(type);
+ H5Sclose(space);
+ return SUCCEED;
+
+error:
+ if(buf)
+ free(buf);
+
+ H5E_BEGIN_TRY {
+ H5Tclose(type);
+ H5Sclose(space);
+ } H5E_END_TRY;
+ return FAIL;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: check_filters
+ *
+ * Purpose: private function to check for the filters and
+ * put tags in the XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+check_filters(hid_t dcpl)
+{
+ int nfilt;
+ int i;
+ H5Z_filter_t filter;
+ char namebuf[120];
+ size_t cd_nelmts = 20;
+ unsigned int cd_values[20];
+ unsigned int flags;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ nfilt = H5Pget_nfilters(dcpl);
+ if (nfilt <= 0)
+ return;
+ for (i = 0; i < nfilt; i++) {
+ filter = H5Pget_filter2(dcpl, (unsigned) i, &flags, (size_t *) &cd_nelmts, cd_values, 120, namebuf, NULL);
+ if (filter == H5Z_FILTER_DEFLATE) {
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDeflate Level=\"", xmlnsprefix);
+ if (cd_nelmts < 1) {
+ /* not sure what this means? */
+ h5tools_str_append(&buffer, "6");
+ }
+ else {
+ h5tools_str_append(&buffer, "%d", cd_values[0]);
+ }
+ h5tools_str_append(&buffer, "\"/>");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else if (filter == H5Z_FILTER_FLETCHER32) {
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sFletcher32 />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else if (filter == H5Z_FILTER_SHUFFLE) {
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sShuffle />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else if (filter == H5Z_FILTER_SZIP) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sSZIP ", xmlnsprefix);
+ if (cd_nelmts < 2) {
+ /* no pixels ? */
+ h5tools_str_append(&buffer, "Pixels_per_block=\"-1\" ");
+ }
+ else {
+ h5tools_str_append(&buffer, "Pixels_per_block=\"%d\" ", cd_values[1]);
+ }
+ /* analyse the options mask */
+ if (cd_values[0] & H5_SZIP_CHIP_OPTION_MASK) {
+ h5tools_str_append(&buffer, "Mode =\"Hardware\" ");
+ }
+ else if (cd_values[0] & H5_SZIP_ALLOW_K13_OPTION_MASK) {
+ h5tools_str_append(&buffer, "Mode =\"K13\" ");
+ }
+ h5tools_str_append(&buffer, "Coding=\"");
+ if (cd_values[0] & H5_SZIP_EC_OPTION_MASK) {
+ h5tools_str_append(&buffer, "Entropy");
+ }
+ else if (cd_values[0] & H5_SZIP_NN_OPTION_MASK) {
+ h5tools_str_append(&buffer, "NN");
+ }
+ h5tools_str_append(&buffer, "\" ");
+
+ h5tools_str_append(&buffer, "ByteOrder=\"");
+ if (cd_values[0] & H5_SZIP_LSB_OPTION_MASK) {
+ h5tools_str_append(&buffer, "LSB");
+ }
+ else if (cd_values[0] & H5_SZIP_MSB_OPTION_MASK) {
+ h5tools_str_append(&buffer, "MSB");
+ }
+ h5tools_str_append(&buffer, "\" ");
+
+ if (cd_values[0] & H5_SZIP_RAW_OPTION_MASK) {
+ h5tools_str_append(&buffer, "Header=\"Raw\"");
+ }
+ h5tools_str_append(&buffer, "/>");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else {
+ /* unknown option */
+ }
+ }
+
+ h5tools_str_close(&buffer);
+}
+
+static void
+xml_dump_fill_value(hid_t dcpl, hid_t type)
+{
+ size_t sz;
+ size_t i;
+ hsize_t space;
+ void *buf;
+ char *name;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ space = H5Tget_size(type);
+ buf = malloc((size_t) space);
+
+ H5Pget_fill_value(dcpl, type, buf);
+
+ if (H5Tget_class(type) == H5T_REFERENCE) {
+ const char * path = lookup_ref_path(*(hobj_ref_t *) buf);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ if (!path) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", "NULL");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ char *t_path = xml_escape_the_string(path, -1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", t_path);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_path);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
+ /* ????? */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- String fill values not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ /* all other data */
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%d\"", *(int *) buf);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_FLOAT:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%f\"", *(float *) buf);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ sz = H5Tget_size(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"");
+ for (i = 0; i < sz; i++) {
+ h5tools_str_append(&buffer, "%x ", *(unsigned int *) buf);
+ buf = (char *) buf + sizeof(unsigned int);
+ }
+ h5tools_str_append(&buffer, "\"");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_ENUM:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ name = H5Tget_member_name(type, *(unsigned *) buf);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_ARRAY:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Array fill values not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_TIME:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Time fill not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_COMPOUND:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Compound fill not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_VLEN:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- VL fill not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Unknown fill datatype: %d -->", H5Tget_class(type));
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ }
+ }
+ free(buf);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_dataset
+ *
+ * Purpose: Dump a description of an HDF5 dataset in XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ * Pedro Vicente, October 9, 2007
+ * added parameters to H5Aiterate2 to allow for other iteration orders
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
+{
+ hid_t type;
+ hid_t space;
+ hid_t dcpl;
+ H5D_fill_value_t fvstatus;
+ int maxdims;
+ hsize_t *chsize;
+ int ndims;
+ int i;
+ H5D_alloc_time_t at;
+ H5D_fill_time_t ft;
+ hsize_t tempi;
+ char *tmp;
+ char *t_name;
+ char *t_tmp;
+ char *t_prefix;
+ unsigned attr_crt_order_flags;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ char *rstr = (char*) HDmalloc(100);
+ char *pstr = (char*) HDmalloc(100);
+
+ tmp = (char*) HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
+ HDstrcat(tmp, "/");
+ HDstrcat(tmp, name);
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ t_name = xml_escape_the_name(name);
+ t_tmp = xml_escape_the_name(tmp);
+ t_prefix = xml_escape_the_name(prefix);
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ xml_name_to_XID(tmp, rstr, 100, 1);
+ xml_name_to_XID(prefix, pstr, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataset Name=\"%s\" OBJ-XID=\"%s\" H5Path= \"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">",
+ xmlnsprefix, t_name, rstr, t_tmp, pstr,
+ strcmp(prefix, "") ? t_prefix : "/");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(t_name);
+ HDfree(t_tmp);
+ HDfree(t_prefix);
+ HDfree(rstr);
+ HDfree(pstr);
+ HDfree(tmp);
+
+ dcpl = H5Dget_create_plist(did);
+ type = H5Dget_type(did);
+ space = H5Dget_space(did);
+
+ /* query the creation properties for attributes */
+ H5Pget_attr_creation_order(dcpl, &attr_crt_order_flags);
+
+ /* Print information about storage layout */
+ if (H5D_CHUNKED == H5Pget_layout(dcpl)) {
+ maxdims = H5Sget_simple_extent_ndims(space);
+ chsize = (hsize_t *) malloc(maxdims * sizeof(hsize_t));
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sChunkedLayout ", xmlnsprefix);
+ ndims = H5Pget_chunk(dcpl, maxdims, chsize);
+ h5tools_str_append(&buffer, "Ndims=\"%d\">", ndims);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ for (i = 0; i < ndims; i++) {
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sChunkDimension DimSize=\"%lu\" />", xmlnsprefix, chsize[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sRequiredFilter>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+ check_filters(dcpl);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sRequiredFilter>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sChunkedLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+ free(chsize);
+ }
+ else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl)) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sContiguousLayout/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else if (H5D_COMPACT == H5Pget_layout(dcpl)) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sCompactLayout/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ /* and check for external.... ?? */
+
+ /* fill value */
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sFillValueInfo ", xmlnsprefix);
+ H5Pget_fill_time(dcpl, &ft);
+ h5tools_str_append(&buffer, "FillTime=\"");
+ switch (ft) {
+ case H5D_FILL_TIME_ALLOC:
+ h5tools_str_append(&buffer, "FillOnAlloc");
+ break;
+ case H5D_FILL_TIME_NEVER:
+ h5tools_str_append(&buffer, "FillNever");
+ break;
+ case H5D_FILL_TIME_IFSET:
+ h5tools_str_append(&buffer, "FillIfSet");
+ break;
+ default:
+ h5tools_str_append(&buffer, "?");
+ break;
+ }
+ h5tools_str_append(&buffer, "\" ");
+ H5Pget_alloc_time(dcpl, &at);
+ h5tools_str_append(&buffer, "AllocationTime=\"");
+ switch (at) {
+ case H5D_ALLOC_TIME_EARLY:
+ h5tools_str_append(&buffer, "Early");
+ break;
+ case H5D_ALLOC_TIME_INCR:
+ h5tools_str_append(&buffer, "Incremental");
+ break;
+ case H5D_ALLOC_TIME_LATE:
+ h5tools_str_append(&buffer, "Late");
+ break;
+ case H5D_ALLOC_TIME_DEFAULT:
+ default:
+ h5tools_str_append(&buffer, "?");
+ break;
+ }
+ h5tools_str_append(&buffer, "\"");
+ h5tools_str_append(&buffer, ">");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sFillValue>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ H5Pfill_value_defined(dcpl, &fvstatus);
+ if (fvstatus == H5D_FILL_VALUE_UNDEFINED || (fvstatus == H5D_FILL_VALUE_DEFAULT && ft == H5D_FILL_TIME_IFSET)) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoFill/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else {
+ xml_dump_fill_value(dcpl, type);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sFillValue>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sFillValueInfo>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ dump_function_table->dump_dataspace_function(space);
+ dump_function_table->dump_datatype_function(type);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if ((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if (H5Aiterate2(did, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if (H5Aiterate2(did, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+ tempi = H5Dget_storage_size(did);
+
+ if (display_data && (tempi > 0)) {
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ case H5T_ENUM:
+ case H5T_ARRAY:
+ ctx.indent_level++;
+ dump_indent += COL;
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+ break;
+
+ case H5T_TIME:
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Time data not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ break;
+
+ case H5T_COMPOUND:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: format of compound data not specified -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+ break;
+
+ case H5T_REFERENCE:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: Region references not supported -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ xml_print_refs(did, DATASET_DATA);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_VLEN:
+ ctx.indent_level--;
+ dump_indent -= COL;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: format of VL data not specified -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.indent_level++;
+ dump_indent += COL;
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+ break;
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Unknown datatype: %d -->", H5Tget_class(type));
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ }
+ }
+ else {
+ /* no data written */
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+
+ H5Tclose(type);
+ H5Sclose(space);
+ H5Pclose(dcpl);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataset>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_print_enum
+ *
+ * Purpose: Print the values of an HDF5 ENUM in XML.
+ * Very similar to regular DDL output.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+xml_print_enum(hid_t type)
+{
+ char **name = NULL; /*member names */
+ unsigned char *value = NULL; /*value array */
+ unsigned nmembs; /*number of members */
+ hid_t super; /*enum base integer type */
+ hid_t native = -1; /*native integer datatype */
+ size_t dst_size; /*destination value type size */
+ unsigned i; /*miscellaneous counters */
+ size_t j;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ nmembs = (unsigned)H5Tget_nmembers(type);
+ super = H5Tget_super(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ xml_print_datatype(super,0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /*
+ * Determine what datatype to use for the native values. To simplify
+ * things we entertain three possibilities:
+ * 1. long long -- the largest native signed integer
+ * 2. unsigned long long -- the largest native unsigned integer
+ * 3. raw format
+ */
+ if (H5Tget_size(type) <= sizeof(long long)) {
+ dst_size = sizeof(long long);
+
+ if (H5T_SGN_NONE == H5Tget_sign(type)) {
+ native = H5T_NATIVE_ULLONG;
+ }
+ else {
+ native = H5T_NATIVE_LLONG;
+ }
+ }
+ else {
+ dst_size = H5Tget_size(type);
+ }
+
+ /* Get the names and raw values of all members */
+ name = (char **)calloc(nmembs, sizeof(char *));
+ value = (unsigned char *)calloc(nmembs, MAX(H5Tget_size(type), dst_size));
+
+ for (i = 0; i < nmembs; i++) {
+ name[i] = H5Tget_member_name(type, i);
+ H5Tget_member_value(type, i, value + i * H5Tget_size(type));
+ }
+
+ /* Convert values to native datatype */
+ if (native > 0)
+ H5Tconvert(super, native, nmembs, value, NULL, H5P_DEFAULT);
+
+ /* Sort members by increasing value */
+ /*not implemented yet */
+
+ /* Print members */
+ ctx.indent_level++;
+ dump_indent += COL;
+ for (i = 0; i < nmembs; i++) {
+ char *t_name = xml_escape_the_name(name[i]);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sEnumElement>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s", t_name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_name);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sEnumElement>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sEnumValue>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if (native < 0) {
+ h5tools_str_append(&buffer, "0x");
+
+ for (j = 0; j < dst_size; j++)
+ h5tools_str_append(&buffer, "%02x", value[i * dst_size + j]);
+ }
+ else if (H5T_SGN_NONE == H5Tget_sign(native)) {
+ h5tools_str_append(&buffer,"%" H5_PRINTF_LL_WIDTH "u", *((unsigned long long *)
+ ((void *) (value + i * dst_size))));
+ }
+ else {
+ h5tools_str_append(&buffer,"%" H5_PRINTF_LL_WIDTH "d",
+ *((long long *) ((void *) (value + i * dst_size))));
+ }
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sEnumValue>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ h5tools_str_close(&buffer);
+
+ /* Release resources */
+ for (i = 0; i < nmembs; i++)
+ free(name[i]);
+
+ free(name);
+ free(value);
+ H5Tclose(super);
+}
+
generated by cgit v0.12 at 2024-11-02 15:14:32 (GMT)