summaryrefslogtreecommitdiffstats
path: root/tools/h5dump
diff options
context:
space:
mode:
authorAllen Byrne <byrn@hdfgroup.org>2012-02-17 21:41:58 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2012-02-17 21:41:58 (GMT)
commitfb762aa6b01d50f18534f447459e0b3557d9fea6 (patch)
tree02f2971dc00028aa32ffc986e10e1fbe04e31bc3 /tools/h5dump
parent5b03d4b08d4babdc88e0938bd9165c52e0227a51 (diff)
downloadhdf5-fb762aa6b01d50f18534f447459e0b3557d9fea6.zip
hdf5-fb762aa6b01d50f18534f447459e0b3557d9fea6.tar.gz
hdf5-fb762aa6b01d50f18534f447459e0b3557d9fea6.tar.bz2
[svn-r21953] HDDFV-7560: h5dump refactoring
Tested: local linux
Diffstat (limited to 'tools/h5dump')
-rw-r--r--tools/h5dump/CMakeLists.txt6
-rw-r--r--tools/h5dump/h5dump.c5962
-rw-r--r--tools/h5dump/h5dump.h217
-rw-r--r--tools/h5dump/h5dump_ddl.c1931
-rw-r--r--tools/h5dump/h5dump_ddl.h50
-rw-r--r--tools/h5dump/h5dump_defines.h54
-rw-r--r--tools/h5dump/h5dump_extern.h112
-rw-r--r--tools/h5dump/h5dump_xml.c4456
-rw-r--r--tools/h5dump/h5dump_xml.h128
9 files changed, 6875 insertions, 6041 deletions
diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt
index 9bbdf1b..652fe83 100644
--- a/tools/h5dump/CMakeLists.txt
+++ b/tools/h5dump/CMakeLists.txt
@@ -10,7 +10,11 @@ INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test)
# --------------------------------------------------------------------
# Add the h5dump executables
# --------------------------------------------------------------------
-ADD_EXECUTABLE (h5dump ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump.c)
+ADD_EXECUTABLE (h5dump
+ ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump.c
+ ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump_ddl.c
+ ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump_xml.c
+)
TARGET_NAMING (h5dump ${LIB_TYPE})
TARGET_LINK_LIBRARIES (h5dump ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
SET_TARGET_PROPERTIES (h5dump PROPERTIES FOLDER tools)
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index 61a9607..7421ddd 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -16,384 +16,46 @@
#include <stdlib.h>
#include "h5dump.h"
-#include "H5private.h"
-#include "h5tools.h"
-#include "h5tools_utils.h"
-#include "h5tools_ref.h"
-#include "h5trav.h"
+#include "h5dump_ddl.h"
+#include "h5dump_xml.h"
/* Name of tool */
#define PROGRAMNAME "h5dump"
-/* Macros for displaying objects */
-#define begin_obj(obj,name,begin) \
- do { \
- if (name) \
- HDfprintf(stdout, "%s \"%s\" %s\n", (obj), (name), (begin)); \
- else \
- HDfprintf(stdout, "%s %s\n", (obj), (begin)); \
- } while(0);
-
-#define end_obj(obj,end) \
- do { \
- if(HDstrlen(end)) { \
- HDfprintf(stdout, "%s", end); \
- if(HDstrlen(obj)) \
- HDfprintf(stdout, " "); \
- } \
- if(HDstrlen(obj)) \
- HDfprintf(stdout, "%s", obj); \
- HDfprintf(stdout, "\n"); \
- } while(0);
-
-/* 3 private values: can't be set, but can be read.
- Note: these are defined in H5Zprivate, they are
- duplicated here.
- */
-#define H5_SZIP_LSB_OPTION_MASK 8
-#define H5_SZIP_MSB_OPTION_MASK 16
-#define H5_SZIP_RAW_OPTION_MASK 128
-
-/* List of table structures. There is one table structure for each file */
-typedef struct h5dump_table_list_t {
- size_t nalloc;
- size_t nused;
- struct {
- unsigned long fileno; /* File number that these tables refer to */
- hid_t oid; /* ID of an object in this file, held open so fileno is consistent */
- table_t *group_table; /* Table of groups */
- table_t *dset_table; /* Table of datasets */
- table_t *type_table; /* Table of datatypes */
- } *tables;
-} h5dump_table_list_t;
-
-static int unamedtype = 0; /* shared datatype with no name */
-static h5dump_table_list_t table_list = {0, 0, NULL};
-static table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL;
-static hbool_t hit_elink = FALSE; /* whether we have traversed an external link */
-static size_t prefix_len = 1024;
-static char *prefix = NULL;
static const char *driver = NULL; /* The driver to open the file with. */
-static const h5dump_header_t *dump_header_format;
-static const char *fp_format = NULL;
const char *outfname=NULL;
-
-
-/* things to display or which are set via command line parameters */
-static int display_all = TRUE;
-static int display_oid = FALSE;
-static int display_data = TRUE;
-static int display_attr_data = TRUE;
-static int display_char = FALSE; /*print 1-byte numbers as ASCII */
-static int usingdasho = FALSE;
-static int display_bb = FALSE; /*superblock */
-static int display_dcpl = FALSE; /*dcpl */
-static int display_fi = FALSE; /*file index */
-static int display_ai = TRUE; /*array index */
-static int display_escape = FALSE; /*escape non printable characters */
-static int display_region = FALSE; /*print region reference data */
-static int enable_error_stack= FALSE; /* re-enable error stack */
-static int disable_compact_subset= FALSE; /* disable compact form of subset notation */
-static int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/
-
-/* sort parameters */
-static H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */
-static H5_iter_order_t sort_order = H5_ITER_INC; /*sort_order [ascending | descending] */
-
-#define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */
-#define PACKED_BITS_SIZE_MAX 8*sizeof(long long) /* Maximum bits size of integer types of packed-bits */
-/* mask list for packed bits */
-static unsigned long long packed_mask[PACKED_BITS_MAX]; /* packed bits are restricted to 8*sizeof(llong) bytes */
-
-/* packed bits display parameters */
-static int packed_offset[PACKED_BITS_MAX];
-static int packed_length[PACKED_BITS_MAX];
-
-/**
- ** Added for XML **
- **/
+static int doxml = 0;
+static int useschema = 1;
+static const char *xml_dtd_uri = NULL;
/* module-scoped variables for XML option */
#define DEFAULT_XSD "http://www.hdfgroup.org/HDF5/XML/schema/HDF5-File.xsd"
#define DEFAULT_DTD "http://www.hdfgroup.org/HDF5/XML/schema/HDF5-File.dtd"
-static int doxml = 0;
-static int useschema = 1;
-static const char *xml_dtd_uri = NULL;
-static const char *xmlnsprefix="hdf5:";
-static int indent; /*how far in to indent the line */
-
-/** end XML **/
-
-/* internal functions */
-static hid_t h5_fileaccess(void);
-static void dump_oid(hid_t oid);
-static void dump_packed_bits(unsigned int packed_index, hid_t type);
-static void print_enum(hid_t type);
-static int xml_name_to_XID(const char *, char *, int , int );
-static void init_prefix(char **prfx, size_t prfx_len);
-static void add_prefix(char **prfx, size_t *prfx_len, const char *name);
-/* callback function used by H5Literate() */
-static herr_t dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void *op_data);
-static int dump_extlink(hid_t group, const char *linkname, const char *objname);
-
-
-
-static h5tool_format_t dataformat = {
- 0, /*raw */
-
- "", /*fmt_raw */
- "%d", /*fmt_int */
- "%u", /*fmt_uint */
-#ifdef H5_VMS
- "%hd", /*fmt_schar */
-#else
- "%hhd", /*fmt_schar */
-#endif
- "%u", /*fmt_uchar */
- "%d", /*fmt_short */
- "%u", /*fmt_ushort */
- "%ld", /*fmt_long */
- "%lu", /*fmt_ulong */
- NULL, /*fmt_llong */
- NULL, /*fmt_ullong */
- "%g", /*fmt_double */
- "%g", /*fmt_float */
-
- 0, /*ascii */
- 0, /*str_locale */
- 0, /*str_repeat */
-
- "[ ", /*arr_pre */
- ",", /*arr_sep */
- " ]", /*arr_suf */
- 1, /*arr_linebreak */
-
- "", /*cmpd_name */
- ",\n", /*cmpd_sep */
- "{\n", /*cmpd_pre */
- "}", /*cmpd_suf */
- "\n", /*cmpd_end */
-
- ", ", /*vlen_sep */
- "(", /*vlen_pre */
- ")", /*vlen_suf */
- "", /*vlen_end */
-
- "%s", /*elmt_fmt */
- ",", /*elmt_suf1 */
- " ", /*elmt_suf2 */
-
- "", /*idx_n_fmt */
- "", /*idx_sep */
- "", /*idx_fmt */
-
- 80, /*line_ncols *//*standard default columns */
- 0, /*line_per_line */
- "", /*line_pre */
- "%s", /*line_1st */
- "%s", /*line_cont */
- "", /*line_suf */
- "", /*line_sep */
- 1, /*line_multi_new */
- " ", /*line_indent */
-
- 1, /*skip_first */
-
- 1, /*obj_hidefileno */
- " "H5_PRINTF_HADDR_FMT, /*obj_format */
-
- 1, /*dset_hidefileno */
- "DATASET %s ", /*dset_format */
- "%s", /*dset_blockformat_pre */
- "%s", /*dset_ptformat_pre */
- "%s", /*dset_ptformat */
- 1, /*array indices */
- 1 /*escape non printable characters */
-};
-
-/**
- ** Added for XML **
- **/
-/*
- * Alternative formating for data dumped to XML
- * In general, the numbers are the same, but separators
- * except spaces are not used.
- *
- * Some of these are not used, as some kinds of data are
- * dumped in completely new subroutines.
- *
- * Some of this formatting may yet need to change.
- *
- * This table only affects XML output.
- */
-static h5tool_format_t xml_dataformat = {
- 0, /*raw */
-
- "", /*fmt_raw */
- "%d", /*fmt_int */
- "%u", /*fmt_uint */
-#ifdef H5_VMS
- "%hd", /*fmt_schar */
-#else
- "%hhd", /*fmt_schar */
-#endif
- "%u", /*fmt_uchar */
- "%d", /*fmt_short */
- "%u", /*fmt_ushort */
- "%ld", /*fmt_long */
- "%lu", /*fmt_ulong */
- NULL, /*fmt_llong */
- NULL, /*fmt_ullong */
- "%g", /*fmt_double */
- "%g", /*fmt_float */
-
- 0, /*ascii */
- 0, /*str_locale */
- 0, /*str_repeat */
-
- " ", /*arr_pre */
- "", /*arr_sep */
- "", /*arr_suf */
- 1, /*arr_linebreak */
-
- "", /*cmpd_name */
- " ", /*cmpd_sep */
- "", /*cmpd_pre */
- "", /*cmpd_suf */
- "", /*cmpd_end */
-
- " ", /*vlen_sep */
- " ", /*vlen_pre */
- "", /*vlen_suf */
- "", /*vlen_end */
-
- "%s", /*elmt_fmt */
- "", /*elmt_suf1 */
- " ", /*elmt_suf2 */
-
- "", /*idx_n_fmt */
- "", /*idx_sep */
- "", /*idx_fmt */
-
- 80, /*line_ncols *//*standard default columns */
- 0, /*line_per_line */
- "", /*line_pre */
- "%s", /*line_1st */
- "%s", /*line_cont */
- "", /*line_suf */
- "", /*line_sep */
- 1, /*line_multi_new */
- " ", /*line_indent */
-
- 1, /*skip_first */
-
- 1, /*obj_hidefileno */
- " "H5_PRINTF_HADDR_FMT, /*obj_format */
-
- 1, /*dset_hidefileno */
- "DATASET %s ", /*dset_format */
- "%s", /*dset_blockformat_pre */
- "%s", /*dset_ptformat_pre */
- "%s", /*dset_ptformat */
- 0, /*array indices */
- 0 /*escape non printable characters */
+/* Standard DDL output */
+static const dump_functions ddl_function_table = {
+ dump_group,
+ dump_named_datatype,
+ dump_dataset,
+ dump_dataspace,
+ dump_datatype,
+ dump_attr_cb,
+ dump_data
};
-/** XML **/
-
-static const h5dump_header_t standardformat = {
- "standardformat", /*name */
- "HDF5", /*fileebgin */
- "", /*fileend */
- SUPER_BLOCK, /*bootblockbegin */
- "", /*bootblockend */
- H5_TOOLS_GROUP, /*groupbegin */
- "", /*groupend */
- H5_TOOLS_DATASET, /*datasetbegin */
- "", /*datasetend */
- ATTRIBUTE, /*attributebegin */
- "", /*attributeend */
- H5_TOOLS_DATATYPE, /*datatypebegin */
- "", /*datatypeend */
- DATASPACE, /*dataspacebegin */
- "", /*dataspaceend */
- DATA, /*databegin */
- "", /*dataend */
- SOFTLINK, /*softlinkbegin */
- "", /*softlinkend */
- EXTLINK, /*extlinkbegin */
- "", /*extlinkend */
- UDLINK, /*udlinkbegin */
- "", /*udlinkend */
- SUBSET, /*subsettingbegin */
- "", /*subsettingend */
- START, /*startbegin */
- "", /*startend */
- STRIDE, /*stridebegin */
- "", /*strideend */
- COUNT, /*countbegin */
- "", /*countend */
- BLOCK, /*blockbegin */
- "", /*blockend */
-
- "{", /*fileblockbegin */
- "}", /*fileblockend */
- "{", /*bootblockblockbegin */
- "}", /*bootblockblockend */
- "{", /*groupblockbegin */
- "}", /*groupblockend */
- "{", /*datasetblockbegin */
- "}", /*datasetblockend */
- "{", /*attributeblockbegin */
- "}", /*attributeblockend */
- "", /*datatypeblockbegin */
- "", /*datatypeblockend */
- "", /*dataspaceblockbegin */
- "", /*dataspaceblockend */
- "{", /*datablockbegin */
- "}", /*datablockend */
- "{", /*softlinkblockbegin */
- "}", /*softlinkblockend */
- "{", /*extlinkblockbegin */
- "}", /*extlinkblockend */
- "{", /*udlinkblockbegin */
- "}", /*udlinkblockend */
- "{", /*strblockbegin */
- "}", /*strblockend */
- "{", /*enumblockbegin */
- "}", /*enumblockend */
- "{", /*structblockbegin */
- "}", /*structblockend */
- "{", /*vlenblockbegin */
- "}", /*vlenblockend */
- "{", /*subsettingblockbegin */
- "}", /*subsettingblockend */
- "(", /*startblockbegin */
- ");", /*startblockend */
- "(", /*strideblockbegin */
- ");", /*strideblockend */
- "(", /*countblockbegin */
- ");", /*countblockend */
- "(", /*blockblockbegin */
- ");", /*blockblockend */
-
- "", /*dataspacedescriptionbegin */
- "", /*dataspacedescriptionend */
- "(", /*dataspacedimbegin */
- ")", /*dataspacedimend */
+/* XML output */
+static const dump_functions xml_function_table = {
+ xml_dump_group,
+ xml_dump_named_datatype,
+ xml_dump_dataset,
+ xml_dump_dataspace,
+ xml_dump_datatype,
+ xml_dump_attr,
+ xml_dump_data
};
-/**
- ** Added for XML **
- **/
-/* internal functions used by XML option */
-static void xml_print_datatype(hid_t, unsigned);
-static void xml_print_enum(hid_t);
-static int xml_print_refs(hid_t, int);
-static int xml_print_strs(hid_t, int);
-static char *xml_escape_the_string(const char *, int);
-static char *xml_escape_the_name(const char *);
+/* internal functions */
+static void init_prefix(char **prfx, size_t prfx_len);
/* a structure for handling the order command-line parameters come in */
struct handler_t {
@@ -528,90 +190,6 @@ static struct long_options l_opts[] = {
{ NULL, 0, '\0' }
};
-
-/**
- ** Change for XML **
- **
- ** The 'dump_xxx' functions have two versions, standard and XML.
- **
- ** They are called indirectly through the 'dump_function_table'.
- ** e.g., dump_group(...) becomes dump_functions->dump_group(...);
- **
- ** The standard functions are unchanged except for the way
- ** they are called
- **/
-
-/* The dump functions of the dump_function_table */
-
-/* standard format: no change */
-static void dump_group(hid_t, const char *);
-static void dump_named_datatype(hid_t, const char *);
-static void dump_dataset(hid_t, const char *, struct subset_t *);
-static void dump_dataspace(hid_t space);
-static void dump_datatype(hid_t type);
-static void dump_data(hid_t, int, struct subset_t *, int);
-static void dump_dcpl(hid_t dcpl, hid_t type_id, hid_t obj_id);
-static void dump_comment(hid_t obj_id);
-static void dump_fcpl(hid_t fid);
-static void dump_fcontents(hid_t fid);
-/* callback function used by H5Aiterate2() */
-static herr_t dump_attr_cb(hid_t loc_id, const char *attr_name, const H5A_info_t *info, void *_op_data);
-
-
-/* XML format: same interface, alternative output */
-
-static void xml_dump_group(hid_t, const char *);
-static void xml_dump_named_datatype(hid_t, const char *);
-static void xml_dump_dataset(hid_t, const char *, struct subset_t *);
-static void xml_dump_dataspace(hid_t space);
-static void xml_dump_datatype(hid_t type);
-static herr_t xml_dump_attr(hid_t, const char *, const H5A_info_t *, void *);
-static void xml_dump_data(hid_t, int, struct subset_t *, int);
-
-/**
- ** Added for XML **
- **
- ** This is the global dispatch table for the dump functions.
- **/
-/* the table of dump functions */
-typedef struct dump_functions_t {
- void (*dump_group_function) (hid_t, const char *);
- void (*dump_named_datatype_function) (hid_t, const char *);
- void (*dump_dataset_function) (hid_t, const char *, struct subset_t *);
- void (*dump_dataspace_function) (hid_t);
- void (*dump_datatype_function) (hid_t);
- herr_t (*dump_attribute_function) (hid_t, const char *, const H5A_info_t *, void *);
- void (*dump_data_function) (hid_t, int, struct subset_t *, int);
-} dump_functions;
-
-/* Standard DDL output */
-static const dump_functions ddl_function_table = {
- dump_group,
- dump_named_datatype,
- dump_dataset,
- dump_dataspace,
- dump_datatype,
- dump_attr_cb,
- dump_data
-};
-
-/* XML output */
-static const dump_functions xml_function_table = {
- xml_dump_group,
- xml_dump_named_datatype,
- xml_dump_dataset,
- xml_dump_dataspace,
- xml_dump_datatype,
- xml_dump_attr,
- xml_dump_data
-};
-
-/*
- * The global table is set to either ddl_function_table or
- * xml_function_table in the initialization.
- */
-static const dump_functions *dump_function_table;
-
/*-------------------------------------------------------------------------
* Function: leave
@@ -768,7 +346,7 @@ usage(const char *prog)
*
*-------------------------------------------------------------------------
*/
-static ssize_t
+ssize_t
table_list_add(hid_t oid, unsigned long file_no)
{
size_t idx; /* Index of table to use */
@@ -821,7 +399,7 @@ table_list_add(hid_t oid, unsigned long file_no)
*
*-------------------------------------------------------------------------
*/
-static ssize_t
+ssize_t
table_list_visited(unsigned long file_no)
{
size_t u; /* Local index variable */
@@ -878,2522 +456,6 @@ table_list_free(void)
/*-------------------------------------------------------------------------
- * Function: print_datatype
- *
- * Purpose: print the datatype.
- *
- * Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications: pvn, March 28, 2006
- * print information about type when a native match is not possible
- *
- *-------------------------------------------------------------------------
- */
-static void
-print_datatype(hid_t type,unsigned in_group)
-{
- char *mname;
- hid_t mtype, str_type;
- unsigned nmembers;
- unsigned ndims;
- unsigned i;
- size_t size=0;
- hsize_t dims[H5DUMP_MAX_RANK];
- H5T_str_t str_pad;
- H5T_cset_t cset;
- H5T_order_t order;
- hid_t super;
- hid_t tmp_type;
- htri_t is_vlstr=FALSE;
- const char *order_s=NULL; /* byte order string */
- H5T_sign_t sign; /* sign scheme value */
- const char *sign_s=NULL; /* sign scheme string */
-
- if (!in_group && H5Tcommitted(type) > 0) {
- H5O_info_t oinfo;
- obj_t *obj; /* Found object */
-
- H5Oget_info(type, &oinfo);
- obj = search_obj(type_table, oinfo.addr);
-
- if(obj) {
- if(!obj->recorded)
- HDfprintf(stdout,"\"/#%a\"", obj->objno);
- else
- HDfprintf(stdout, "\"%s\"", obj->objname);
- }
- else {
- error_msg("unknown committed type.\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
- }
- else {
- switch(H5Tget_class(type)) {
- case H5T_INTEGER:
- if(H5Tequal(type, H5T_STD_I8BE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_I8BE");
- }
- else if(H5Tequal(type, H5T_STD_I8LE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_I8LE");
- }
- else if(H5Tequal(type, H5T_STD_I16BE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_I16BE");
- }
- else if(H5Tequal(type, H5T_STD_I16LE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_I16LE");
- }
- else if(H5Tequal(type, H5T_STD_I32BE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_I32BE");
- }
- else if(H5Tequal(type, H5T_STD_I32LE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_I32LE");
- }
- else if(H5Tequal(type, H5T_STD_I64BE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_I64BE");
- }
- else if(H5Tequal(type, H5T_STD_I64LE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_I64LE");
- }
- else if(H5Tequal(type, H5T_STD_U8BE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_U8BE");
- }
- else if(H5Tequal(type, H5T_STD_U8LE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_U8LE");
- }
- else if(H5Tequal(type, H5T_STD_U16BE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_U16BE");
- }
- else if(H5Tequal(type, H5T_STD_U16LE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_U16LE");
- }
- else if(H5Tequal(type, H5T_STD_U32BE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_U32BE");
- }
- else if(H5Tequal(type, H5T_STD_U32LE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_U32LE");
- }
- else if(H5Tequal(type, H5T_STD_U64BE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_U64BE");
- }
- else if(H5Tequal(type, H5T_STD_U64LE) == TRUE) {
- HDfprintf(stdout, "H5T_STD_U64LE");
- }
- else if(H5Tequal(type, H5T_NATIVE_SCHAR) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_SCHAR");
- }
- else if(H5Tequal(type, H5T_NATIVE_UCHAR) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_UCHAR");
- }
- else if(H5Tequal(type, H5T_NATIVE_SHORT) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_SHORT");
- }
- else if(H5Tequal(type, H5T_NATIVE_USHORT) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_USHORT");
- }
- else if(H5Tequal(type, H5T_NATIVE_INT) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_INT");
- }
- else if(H5Tequal(type, H5T_NATIVE_UINT) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_UINT");
- }
- else if(H5Tequal(type, H5T_NATIVE_LONG) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_LONG");
- }
- else if(H5Tequal(type, H5T_NATIVE_ULONG) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_ULONG");
- }
- else if(H5Tequal(type, H5T_NATIVE_LLONG) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_LLONG");
- }
- else if(H5Tequal(type, H5T_NATIVE_ULLONG) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_ULLONG");
- }
- else {
-
- /* byte order */
- if(H5Tget_size(type) > 1) {
- order = H5Tget_order(type);
- if (H5T_ORDER_LE == order) {
- order_s = " little-endian";
- }
- else if (H5T_ORDER_BE == order) {
- order_s = " big-endian";
- }
- else if (H5T_ORDER_VAX == order) {
- order_s = " mixed-endian";
- }
- else {
- order_s = " unknown-byte-order";
- }
- }
- else {
- order_s = "";
- } /* end of if(H5Tget_size(type) > 1) */
-
- /* sign */
- if ((sign = H5Tget_sign(type)) >= 0) {
- if (H5T_SGN_NONE == sign) {
- sign_s = " unsigned";
- }
- else if (H5T_SGN_2 == sign) {
- sign_s = "";
- }
- else {
- sign_s = " unknown-sign";
- }
- }
- else {
- sign_s = " unknown-sign";
- } /* end of if ((sign = H5Tget_sign(type)) >= 0) */
-
- /* print size, order, and sign */
- HDfprintf(stdout, "%lu-bit%s%s integer", (unsigned long)(8*H5Tget_size(type)), order_s, sign_s);
- } /* end of if(H5Tequal(...) */
- break;
-
- case H5T_FLOAT:
- if(H5Tequal(type, H5T_IEEE_F32BE) == TRUE) {
- HDfprintf(stdout, "H5T_IEEE_F32BE");
- }
- else if(H5Tequal(type, H5T_IEEE_F32LE) == TRUE) {
- HDfprintf(stdout, "H5T_IEEE_F32LE");
- }
- else if(H5Tequal(type, H5T_IEEE_F64BE) == TRUE) {
- HDfprintf(stdout, "H5T_IEEE_F64BE");
- }
- else if(H5Tequal(type, H5T_IEEE_F64LE) == TRUE) {
- HDfprintf(stdout, "H5T_IEEE_F64LE");
- }
- else if(H5Tequal(type, H5T_VAX_F32) == TRUE) {
- HDfprintf(stdout, "H5T_VAX_F32");
- }
- else if(H5Tequal(type, H5T_VAX_F64) == TRUE) {
- HDfprintf(stdout, "H5T_VAX_F64");
- }
- else if(H5Tequal(type, H5T_NATIVE_FLOAT) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_FLOAT");
- }
- else if(H5Tequal(type, H5T_NATIVE_DOUBLE) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_DOUBLE");
-#if H5_SIZEOF_LONG_DOUBLE !=0
- }
- else if(H5Tequal(type, H5T_NATIVE_LDOUBLE) == TRUE) {
- HDfprintf(stdout, "H5T_NATIVE_LDOUBLE");
-#endif
- }
- else {
- /* byte order */
- if(H5Tget_size(type) > 1) {
- order = H5Tget_order(type);
- if (H5T_ORDER_LE == order) {
- order_s = " little-endian";
- }
- else if (H5T_ORDER_BE == order) {
- order_s = " big-endian";
- }
- else if (H5T_ORDER_VAX == order) {
- order_s = " mixed-endian";
- }
- else {
- order_s = " unknown-byte-order";
- }
- }
- else {
- order_s = "";
- } /* end of if(H5Tget_size(type) > 1) */
-
- /* print size and byte order */
- HDfprintf(stdout, "%lu-bit%s floating-point", (unsigned long)(8*H5Tget_size(type)), order_s);
- } /* end of if(H5Tequal(...) */
- break;
-
- case H5T_TIME:
- HDfprintf(stdout, "H5T_TIME: not yet implemented");
- break;
-
- case H5T_STRING:
- /* Make a copy of type in memory in case when TYPE is on disk, the size
- * will be bigger than in memory. This makes it easier to compare
- * types in memory. */
- tmp_type = H5Tcopy(type);
- size = H5Tget_size(tmp_type);
- str_pad = H5Tget_strpad(tmp_type);
- cset = H5Tget_cset(tmp_type);
- is_vlstr = H5Tis_variable_str(tmp_type);
-
- HDfprintf(stdout, "H5T_STRING %s\n", dump_header_format->strblockbegin);
- indent += COL;
-
- indentation(indent + COL);
- if(is_vlstr)
- HDfprintf(stdout, "%s H5T_VARIABLE;\n", STRSIZE);
- else
- HDfprintf(stdout, "%s %d;\n", STRSIZE, (int) size);
-
- indentation(indent + COL);
- HDfprintf(stdout, "%s ", STRPAD);
- if (str_pad == H5T_STR_NULLTERM)
- HDfprintf(stdout, "H5T_STR_NULLTERM;\n");
- else if (str_pad == H5T_STR_NULLPAD)
- HDfprintf(stdout, "H5T_STR_NULLPAD;\n");
- else if (str_pad == H5T_STR_SPACEPAD)
- HDfprintf(stdout, "H5T_STR_SPACEPAD;\n");
- else
- HDfprintf(stdout, "H5T_STR_ERROR;\n");
-
- indentation(indent + COL);
- HDfprintf(stdout, "%s ", CSET);
-
- if (cset == H5T_CSET_ASCII)
- HDfprintf(stdout, "H5T_CSET_ASCII;\n");
- else
- HDfprintf(stdout, "unknown_cset;\n");
-
- str_type = H5Tcopy(H5T_C_S1);
- if(is_vlstr)
- H5Tset_size(str_type, H5T_VARIABLE);
- else
- H5Tset_size(str_type, size);
- H5Tset_cset(str_type, cset);
- H5Tset_strpad(str_type, str_pad);
-
- indentation(indent + COL);
- HDfprintf(stdout, "%s ", CTYPE);
-
- /* Check C variable-length string first. Are the two types equal? */
- if (H5Tequal(tmp_type, str_type)) {
- HDfprintf(stdout, "H5T_C_S1;\n");
- goto done;
- }
-
- /* Change the endianness and see if they're equal. */
- order = H5Tget_order(tmp_type);
- if(order == H5T_ORDER_LE)
- H5Tset_order(str_type, H5T_ORDER_LE);
- else if(order == H5T_ORDER_BE)
- H5Tset_order(str_type, H5T_ORDER_BE);
-
- if (H5Tequal(tmp_type, str_type)) {
- HDfprintf(stdout, "H5T_C_S1;\n");
- goto done;
- }
-
- /* If not equal to C variable-length string, check Fortran type. */
- H5Tclose(str_type);
- str_type = H5Tcopy(H5T_FORTRAN_S1);
- H5Tset_cset(str_type, cset);
- H5Tset_size(str_type, size);
- H5Tset_strpad(str_type, str_pad);
-
- /* Are the two types equal? */
- if (H5Tequal(tmp_type, str_type)) {
- HDfprintf(stdout, "H5T_FORTRAN_S1;\n");
- goto done;
- }
-
- /* Change the endianness and see if they're equal. */
- order = H5Tget_order(tmp_type);
- if(order == H5T_ORDER_LE)
- H5Tset_order(str_type, H5T_ORDER_LE);
- else if(order == H5T_ORDER_BE)
- H5Tset_order(str_type, H5T_ORDER_BE);
-
- if (H5Tequal(tmp_type, str_type)) {
- HDfprintf(stdout, "H5T_FORTRAN_S1;\n");
- goto done;
- }
-
- /* Type doesn't match any of above. */
- HDfprintf(stdout, "unknown_one_character_type;\n ");
- h5tools_setstatus(EXIT_FAILURE);
-
- done:
- H5Tclose(str_type);
- H5Tclose(tmp_type);
-
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s", dump_header_format->strblockend);
- break;
-
- case H5T_BITFIELD:
- if (H5Tequal(type, H5T_STD_B8BE)==TRUE) {
- HDfprintf(stdout, "H5T_STD_B8BE");
- }
- else if (H5Tequal(type, H5T_STD_B8LE)==TRUE) {
- HDfprintf(stdout, "H5T_STD_B8LE");
- }
- else if (H5Tequal(type, H5T_STD_B16BE)==TRUE) {
- HDfprintf(stdout, "H5T_STD_B16BE");
- }
- else if (H5Tequal(type, H5T_STD_B16LE)==TRUE) {
- HDfprintf(stdout, "H5T_STD_B16LE");
- }
- else if (H5Tequal(type, H5T_STD_B32BE)==TRUE) {
- HDfprintf(stdout, "H5T_STD_B32BE");
- }
- else if (H5Tequal(type, H5T_STD_B32LE)==TRUE) {
- HDfprintf(stdout, "H5T_STD_B32LE");
- }
- else if (H5Tequal(type, H5T_STD_B64BE)==TRUE) {
- HDfprintf(stdout, "H5T_STD_B64BE");
- }
- else if (H5Tequal(type, H5T_STD_B64LE)==TRUE) {
- HDfprintf(stdout, "H5T_STD_B64LE");
- }
- else {
- HDfprintf(stdout, "undefined bitfield");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end of if(H5Tequal(...) */
- break;
-
- case H5T_OPAQUE:
- HDfprintf(stdout, "\n");
- indentation(indent + COL);
- HDfprintf(stdout, "H5T_OPAQUE;\n");
- indentation(indent + COL);
- mname = H5Tget_tag(type);
- HDfprintf(stdout, "OPAQUE_TAG \"%s\";\n", mname);
- free(mname);
- indentation(indent);
- break;
-
- case H5T_COMPOUND:
- nmembers = H5Tget_nmembers(type);
- HDfprintf(stdout, "H5T_COMPOUND %s\n", dump_header_format->structblockbegin);
-
- for (i = 0; i < nmembers; i++) {
- mname = H5Tget_member_name(type, i);
- mtype = H5Tget_member_type(type, i);
- indentation(indent + COL);
-
- if (H5Tget_class(mtype) == H5T_COMPOUND)
- indent += COL;
-
- print_datatype(mtype,0);
-
- if (H5Tget_class(mtype) == H5T_COMPOUND)
- indent -= COL;
-
- HDfprintf(stdout, " \"%s\";\n", mname);
- free(mname);
- } /* end of for (i = 0; i < nmembers; i++) */
-
- indentation(indent);
- HDfprintf(stdout, "%s", dump_header_format->structblockend);
- break;
-
- case H5T_REFERENCE:
- HDfprintf(stdout, "H5T_REFERENCE");
- /* The BNF document states that the type of reference should be
- * displayed after "H5T_REFERENCE". */
- if (H5Tequal(type, H5T_STD_REF_DSETREG)==TRUE) {
- HDfprintf(stdout, " { H5T_STD_REF_DSETREG }");
- }
- else {
- HDfprintf(stdout, " { H5T_STD_REF_OBJECT }");
- }
- break;
-
- case H5T_ENUM:
- HDfprintf(stdout, "H5T_ENUM %s\n", dump_header_format->enumblockbegin);
- indent += COL;
- indentation(indent + COL);
- super = H5Tget_super(type);
- print_datatype(super,0);
- HDfprintf(stdout, ";\n");
- print_enum(type);
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s", dump_header_format->enumblockend);
- break;
-
- case H5T_VLEN:
- HDfprintf(stdout, "H5T_VLEN %s ", dump_header_format->vlenblockbegin);
- super = H5Tget_super(type);
- print_datatype(super,0);
- H5Tclose(super);
-
- /* Print closing */
- HDfprintf(stdout, "%s", dump_header_format->vlenblockend);
- break;
-
- case H5T_ARRAY:
- /* Get array base type */
- super = H5Tget_super(type);
-
- /* Print lead-in */
- HDfprintf(stdout, "H5T_ARRAY { ");
-
- /* Get array information */
- ndims = H5Tget_array_ndims(type);
- H5Tget_array_dims2(type, dims);
-
- /* Print array dimensions */
- for (i = 0; i < ndims; i++)
- HDfprintf(stdout, "[%d]", (int) dims[i]);
-
- HDfprintf(stdout, " ");
-
- /* Print base type */
- print_datatype(super,0);
-
- /* Close array base type */
- H5Tclose(super);
-
- /* Print closing */
- HDfprintf(stdout, " }");
-
- break;
-
- default:
- HDfprintf(stdout, "unknown datatype");
- h5tools_setstatus(EXIT_FAILURE);
- break;
- }
- } /* end else */
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: dump_datatype
- *
- * Purpose: Dump the datatype. Datatype can be HDF5 predefined
- * atomic datatype or committed/transient datatype.
- *
- * Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_datatype(hid_t type)
-{
- indent += COL;
-
- indentation(indent);
- HDfprintf(stdout, "%s %s ", dump_header_format->datatypebegin, dump_header_format->datatypeblockbegin);
-
- print_datatype(type,0);
-
- end_obj(dump_header_format->datatypeend, dump_header_format->datatypeblockend);
- indent -= COL;
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_dataspace
- *
- * Purpose: Dump the dataspace. Dataspace can be named dataspace,
- * array, or others.
- *
- * Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_dataspace(hid_t space)
-{
- hsize_t size[H5DUMP_MAX_RANK];
- hsize_t maxsize[H5DUMP_MAX_RANK];
- int i;
-
- int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
- H5S_class_t space_type = H5Sget_simple_extent_type(space);
-
- indentation(indent + COL);
- HDfprintf(stdout, "%s ", dump_header_format->dataspacebegin);
-
- switch(space_type) {
- case H5S_SCALAR:
- /* scalar dataspace */
- HDfprintf(stdout, "%s %s", dump_header_format->dataspacedescriptionbegin, S_SCALAR);
- break;
-
- case H5S_SIMPLE:
- /* simple dataspace */
- HDfprintf(stdout, "%s %s { %s %Hu",
- dump_header_format->dataspacedescriptionbegin, S_SIMPLE,
- dump_header_format->dataspacedimbegin, size[0]);
-
- for(i = 1; i < ndims; i++)
- HDfprintf(stdout, ", %Hu", size[i]);
-
- HDfprintf(stdout, " %s / ", dump_header_format->dataspacedimend);
-
- if(maxsize[0] == H5S_UNLIMITED)
- HDfprintf(stdout, "%s %s", dump_header_format->dataspacedimbegin, "H5S_UNLIMITED");
- else
- HDfprintf(stdout, "%s %Hu", dump_header_format->dataspacedimbegin, maxsize[0]);
-
- for(i = 1; i < ndims; i++)
- if(maxsize[i] == H5S_UNLIMITED)
- HDfprintf(stdout, ", %s", "H5S_UNLIMITED");
- else
- HDfprintf(stdout, ", %Hu", maxsize[i]);
-
- HDfprintf(stdout, " %s }", dump_header_format->dataspacedimend);
- break;
-
- case H5S_NULL:
- /* null dataspace */
- HDfprintf(stdout, "%s %s", dump_header_format->dataspacedescriptionbegin, S_NULL);
- break;
-
- case H5S_NO_CLASS:
- default:
- HDfprintf(stdout, "%s unknown dataspace %s\n", BEGIN, END);
- break;
- } /* end switch */
-
- end_obj(dump_header_format->dataspaceend, dump_header_format->dataspaceblockend);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: dump_attr_cb
- *
- * Purpose: attribute function callback called by H5Aiterate2, displays the attribute
- *
- * Return: Success: SUCCEED
- *
- * Failure: FAIL
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications: Pedro Vicente, October 4, 2007
- * Added H5A_info_t parameter to conform with H5Aiterate2
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t UNUSED *info, void UNUSED *_op_data)
-{
- hid_t attr_id;
- herr_t ret = SUCCEED;
-
- indentation(indent);
- begin_obj(dump_header_format->attributebegin, attr_name, dump_header_format->attributeblockbegin);
-
- if((attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT)) < 0) {
- indentation(indent + COL);
- error_msg("unable to open attribute \"%s\"\n", attr_name);
- indentation(indent);
- end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend);
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- }
- else {
- hid_t type, space;
-
- type = H5Aget_type(attr_id);
- space = H5Aget_space(attr_id);
- dump_datatype(type);
- dump_dataspace(space);
-
- if(display_oid)
- dump_oid(attr_id);
-
- if(display_data || display_attr_data)
- dump_data(attr_id, ATTRIBUTE_DATA, NULL, display_ai);
-
- H5Tclose(type);
- H5Sclose(space);
- H5Aclose(attr_id);
-
- indentation(indent);
- end_obj(dump_header_format->attributeend,dump_header_format->attributeblockend);
- }
-
- return ret;
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_selected_attr
- *
- * Purpose: dump the selected attribute
- *
- * Return: Success: SUCCEED
- *
- * Failure: FAIL
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-dump_selected_attr(hid_t loc_id, const char *name)
-{
- hid_t oid = -1;
- hid_t attr_id = -1;
- char *obj_name;
- const char *attr_name;
- int j;
-
- j = (int)HDstrlen(name) - 1;
- obj_name = (char *)HDmalloc((size_t)j + 2);
- if(obj_name == NULL)
- goto error;
-
- /* find the last / */
- while(j >= 0) {
- if (name[j] == '/')
- break;
- j--;
- }
-
- /* object name */
- if(j == -1)
- HDstrcpy(obj_name, "/");
- else {
- HDstrncpy(obj_name, name, (size_t)j + 1);
- obj_name[j + 1] = '\0';
- } /* end else */
-
- attr_name = name + j + 1;
- begin_obj(dump_header_format->attributebegin, name,
- dump_header_format->attributeblockbegin);
-
- /* Open the object with the attribute */
- if((oid = H5Oopen(loc_id, obj_name, H5P_DEFAULT)) < 0) {
- indentation(COL);
- error_msg("unable to open object \"%s\"\n", obj_name);
- end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend);
- goto error;
- } /* end if */
-
- if((attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT)) >= 0) {
- hid_t type, space;
-
- type = H5Aget_type(attr_id);
- space = H5Aget_space(attr_id);
- dump_datatype(type);
- dump_dataspace(space);
-
- if(display_oid)
- dump_oid(attr_id);
-
- if(display_data || display_attr_data)
- dump_data(attr_id, ATTRIBUTE_DATA, NULL, display_ai);
-
- H5Tclose(type);
- H5Sclose(space);
- H5Aclose(attr_id);
- end_obj(dump_header_format->attributeend,
- dump_header_format->attributeblockend);
- }
- else {
- indentation(COL);
- error_msg("unable to open attribute \"%s\"\n", obj_name);
- end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend);
- goto error;
- }
-
- /* Close object */
- if(H5Oclose(oid) < 0) {
- goto error;
- } /* end if */
-
- HDfree(obj_name);
- return SUCCEED;
-
-error:
- h5tools_setstatus(EXIT_FAILURE);
- if(obj_name)
- HDfree(obj_name);
-
- H5E_BEGIN_TRY {
- H5Oclose(oid);
- H5Aclose(attr_id);
- } H5E_END_TRY;
- return FAIL;
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_all_cb
- *
- * Purpose: function callback called by H5Literate,
- * displays everything in the specified object
- *
- * Return: Success: SUCCEED
- *
- * Failure: FAIL
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- * RMcG, November 2000
- * Added XML support. Also, optionally checks the op_data argument
- *
- * PVN, May 2008
- * Dump external links
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED *op_data)
-{
- hid_t obj;
- herr_t ret = SUCCEED;
- char *obj_path = NULL; /* Full path of object */
-
- /* Build the object's path name */
- obj_path = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
- if(!obj_path) {
- ret = FAIL;
- goto done;
- }
-
- HDstrcpy(obj_path, prefix);
- HDstrcat(obj_path, "/");
- HDstrcat(obj_path, name);
-
- if(linfo->type == H5L_TYPE_HARD) {
- H5O_info_t oinfo;
-
- /* Stat the object */
- if(H5Oget_info_by_name(group, name, &oinfo, H5P_DEFAULT) < 0) {
- error_msg("unable to get object information for \"%s\"\n", name);
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- goto done;
- } /* end if */
-
- switch(oinfo.type) {
- case H5O_TYPE_GROUP:
- if((obj = H5Gopen2(group, name, H5P_DEFAULT)) < 0) {
- error_msg("unable to dump group \"%s\"\n", name);
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- }
- else {
- char *old_prefix; /* Pointer to previous prefix */
-
- /* Keep copy of prefix before iterating into group */
- old_prefix = HDstrdup(prefix);
- HDassert(old_prefix);
-
- /* Append group name to prefix */
- add_prefix(&prefix, &prefix_len, name);
-
- /* Iterate into group */
- dump_function_table->dump_group_function(obj, name);
-
- /* Restore old prefix name */
- HDstrcpy(prefix, old_prefix);
- HDfree(old_prefix);
-
- /* Close group */
- H5Gclose(obj);
- }
- break;
-
- case H5O_TYPE_DATASET:
- if((obj = H5Dopen2(group, name, H5P_DEFAULT)) >= 0) {
- if(oinfo.rc > 1 || hit_elink) {
- obj_t *found_obj; /* Found object */
-
- found_obj = search_obj(dset_table, oinfo.addr);
-
- if(found_obj == NULL) {
- indentation(indent);
- begin_obj(dump_header_format->datasetbegin, name, dump_header_format->datasetblockbegin);
- indentation(indent + COL);
- error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
- indentation(indent);
- end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend);
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- H5Dclose(obj);
- goto done;
- }
- else if(found_obj->displayed) {
- indentation(indent);
-
- if(!doxml) {
- begin_obj(dump_header_format->datasetbegin, name, dump_header_format->datasetblockbegin);
- indentation(indent + COL);
- HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
- indentation(indent);
- end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend);
- }
- else {
- /* the XML version */
- char *t_obj_path = xml_escape_the_name(obj_path);
- char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
- char *t_name = xml_escape_the_name(name);
- char *t_objname = xml_escape_the_name(found_obj->objname);
- char dsetxid[100];
- char parentxid[100];
- char pointerxid[100];
-
- /* Create OBJ-XIDs for the parent and object */
- xml_name_to_XID(obj_path, dsetxid, sizeof(dsetxid), 1);
- xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
-
- HDfprintf(stdout, "<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" "
- "H5Path=\"%s\" Parents=\"%s\" "
- "H5ParentPaths=\"%s\">\n",
- xmlnsprefix,
- t_name, /* Dataset Name */
- dsetxid, get_next_xid(), /* OBJ-XID */
- t_obj_path, /* H5Path */
- parentxid, /* Parents */
- t_prefix); /* H5ParentPaths */
-
- indentation(indent + COL);
- xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
- HDfprintf(stdout, "<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
- xmlnsprefix,
- pointerxid,t_objname);
- indentation(indent);
- HDfprintf(stdout, "</%sDataset>\n", xmlnsprefix);
-
- HDfree(t_name);
- HDfree(t_obj_path);
- HDfree(t_prefix);
- HDfree(t_objname);
- }
-
- H5Dclose(obj);
- goto done;
- }
- else {
- found_obj->displayed = TRUE;
- }
- } /* end if */
-
- dump_function_table->dump_dataset_function(obj, name, NULL);
- H5Dclose(obj);
- }
- else {
- error_msg("unable to dump dataset \"%s\"\n", name);
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- }
- break;
-
- case H5O_TYPE_NAMED_DATATYPE:
- if((obj = H5Topen2(group, name, H5P_DEFAULT)) < 0) {
- error_msg("unable to dump datatype \"%s\"\n", name);
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- }
- else {
- dump_function_table->dump_named_datatype_function(obj, name);
- H5Tclose(obj);
- }
- break;
-
- default:
- error_msg("unknown object \"%s\"\n", name);
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- }
- } /* end if */
- else {
- char *targbuf;
-
- switch(linfo->type) {
- case H5L_TYPE_SOFT:
- indentation(indent);
- targbuf = (char *)HDmalloc(linfo->u.val_size);
- HDassert(targbuf);
-
- if(!doxml) {
- begin_obj(dump_header_format->softlinkbegin, name, dump_header_format->softlinkblockbegin);
- indentation(indent + COL);
- }
-
- if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
- error_msg("unable to get link value\n");
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- }
- else {
- /* print the value of a soft link */
- if (!doxml) {
- /* Standard DDL: no modification */
- HDfprintf(stdout, "LINKTARGET \"%s\"\n", targbuf);
- }
- else {
- /* XML */
- char linkxid[100];
- char parentxid[100];
- char targetxid[100];
- char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
- char *t_name = xml_escape_the_name(name);
- char *t_targbuf = xml_escape_the_name(targbuf);
- char *t_obj_path = xml_escape_the_name(obj_path);
- char *t_link_path;
- int res;
-
- t_link_path = (char *)HDmalloc(HDstrlen(prefix) + linfo->u.val_size + 1);
- if(targbuf[0] == '/')
- HDstrcpy(t_link_path, targbuf);
- else {
- HDstrcpy(t_link_path, prefix);
- HDstrcat(HDstrcat(t_link_path, "/"), targbuf);
- } /* end else */
-
- /* Create OBJ-XIDs for the parent and object */
- xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
- xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
-
- /* Try to create an OBJ-XID for the object pointed to */
- res = xml_name_to_XID(t_link_path, targetxid, sizeof(targetxid), 0);
- if (res == 0) {
- /* target obj found */
- HDfprintf(stdout, "<%sSoftLink LinkName=\"%s\" "
- "OBJ-XID=\"%s\" "
- "H5SourcePath=\"%s\" "
- "TargetPath=\"%s\" TargetObj=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- t_name, /* LinkName */
- linkxid, /* OBJ-XID */
- t_obj_path, /* H5SourcePath */
- t_targbuf, /* TargetPath */
- targetxid, /* TargetObj */
- parentxid, /* Parents */
- t_prefix); /* H5ParentPaths */
- }
- else {
- /* dangling link -- omit from xml attributes */
- HDfprintf(stdout, "<%sSoftLink LinkName=\"%s\" "
- "OBJ-XID=\"%s\" "
- "H5SourcePath=\"%s\" "
- "TargetPath=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- t_name, /* LinkName */
- linkxid, /* OBJ-XID */
- t_obj_path, /* H5SourcePath */
- t_targbuf, /* TargetPath */
- parentxid, /* Parents */
- t_prefix); /* H5ParentPaths */
- }
-
- HDfree(t_prefix);
- HDfree(t_name);
- HDfree(t_targbuf);
- HDfree(t_obj_path);
- HDfree(t_link_path);
- }
- }
-
- if (!doxml) {
- indentation(indent);
- end_obj(dump_header_format->softlinkend, dump_header_format->softlinkblockend);
- }
-
- HDfree(targbuf);
- break;
-
- case H5L_TYPE_EXTERNAL:
- targbuf = (char *)HDmalloc(linfo->u.val_size);
- HDassert(targbuf);
-
- indentation(indent);
- if(!doxml)
- begin_obj(dump_header_format->extlinkbegin, name, dump_header_format->extlinkblockbegin);
-
- if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
- error_msg("unable to get external link value\n");
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- } /* end if */
- else {
- const char *filename;
- const char *targname;
-
- if(H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &targname) < 0) {
- error_msg("unable to unpack external link value\n");
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- } /* end if */
- else {
- if(!doxml) {
- indentation(indent + COL);
- HDfprintf(stdout, "TARGETFILE \"%s\"\n", filename);
- indentation(indent + COL);
- HDfprintf(stdout, "TARGETPATH \"%s\"\n", targname);
-
- /* dump the external link */
- dump_extlink(group, name, targname);
- } /* end if */
- /* XML */
- else {
- char linkxid[100];
- char parentxid[100];
- char *t_name = xml_escape_the_name(name);
- char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
- char *t_obj_path = xml_escape_the_name(obj_path);
- char *t_filename = xml_escape_the_name(filename);
- char *t_targname = xml_escape_the_name(targname);
-
- /* Create OBJ-XIDs for the parent and object */
- xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
- xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
-
- HDfprintf(stdout, "<%sExternalLink LinkName=\"%s\" "
- "OBJ-XID=\"%s\" "
- "H5SourcePath=\"%s\" "
- "TargetFilename=\"%s\" "
- "TargetPath=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- t_name, /* LinkName */
- linkxid, /* OBJ-XID */
- t_obj_path, /* H5SourcePath */
- filename, /* TargetFilename */
- targname, /* TargetPath*/
- parentxid, /* Parents */
- t_prefix); /* H5ParentPaths */
- HDfree(t_prefix);
- HDfree(t_name);
- HDfree(t_filename);
- HDfree(t_targname);
- HDfree(t_obj_path);
- } /* end else */
- } /* end else */
- } /* end else */
- if(!doxml) {
- indentation(indent);
- end_obj(dump_header_format->extlinkend, dump_header_format->extlinkblockend);
- } /* end if */
- HDfree(targbuf);
- break;
-
- default:
- indentation(indent);
- if(!doxml) {
- begin_obj(dump_header_format->udlinkbegin, name, dump_header_format->udlinkblockbegin);
- indentation(indent + COL);
- HDfprintf(stdout, "LINKCLASS %d\n", linfo->type);
- indentation(indent);
- end_obj(dump_header_format->udlinkend, dump_header_format->udlinkblockend);
- } /* end if */
- /* XML */
- else {
- char linkxid[100];
- char parentxid[100];
- char *t_name = xml_escape_the_name(name);
- char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
- char *t_obj_path = xml_escape_the_name(obj_path);
-
- /* Create OBJ-XIDs for the parent and object */
- xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
- xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
-
- HDfprintf(stdout, "<%sUserDefined LinkName=\"%s\" "
- "OBJ-XID=\"%s\" "
- "H5SourcePath=\"%s\" "
- "LinkClass=\"%d\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- t_name, /* LinkName */
- linkxid, /* OBJ-XID */
- t_obj_path, /* H5SourcePath */
- linfo->type, /* LinkClass */
- parentxid, /* Parents */
- t_prefix); /* H5ParentPaths */
- HDfree(t_prefix);
- HDfree(t_name);
- HDfree(t_obj_path);
- } /* end else */
- break;
- } /* end switch */
- } /* end else */
-
-done:
- if(obj_path)
- HDfree(obj_path);
- return ret;
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_named_datatype
- *
- * Purpose: Dump named datatype
- *
- * Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- * Pedro Vicente, March 27, 2006
- * added display of attributes
- * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for
- * other iteration orders
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_named_datatype(hid_t tid, const char *name)
-{
- H5O_info_t oinfo;
- unsigned attr_crt_order_flags;
- hid_t tcpl_id; /* datatype creation property list ID */
-
-
- if ((tcpl_id = H5Tget_create_plist(tid)) < 0) {
- error_msg("error in getting creation property list ID\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- /* query the creation properties for attributes */
- if (H5Pget_attr_creation_order(tcpl_id, &attr_crt_order_flags) < 0) {
- error_msg("error in getting creation properties\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- if(H5Pclose(tcpl_id) < 0) {
- error_msg("error in closing creation property list ID\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
-
- indentation(indent);
- HDfprintf(stdout, "%s \"%s\" %s", dump_header_format->datatypebegin, name,
- dump_header_format->datatypeblockbegin);
-
- H5Oget_info(tid, &oinfo);
-
- /* Must check for uniqueness of all objects if we've traversed an elink,
- * otherwise only check if the reference count > 1.
- */
- if(oinfo.rc > 1 || hit_elink) {
- obj_t *found_obj; /* Found object */
-
- found_obj = search_obj(type_table, oinfo.addr);
-
- if (found_obj == NULL) {
- error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
- h5tools_setstatus(EXIT_FAILURE);
- goto done;
- }
- else if (found_obj->displayed) {
- HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
- goto done;
- }
- else
- found_obj->displayed = TRUE;
- } /* end if */
-
- print_datatype(tid, 1);
- if(H5Tget_class(tid) != H5T_COMPOUND)
- HDfprintf(stdout, ";\n");
-
- /* print attributes */
- indent += COL;
-
- /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
- in the datatype's create property list for attributes, then, sort by creation order, otherwise by name */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
- if(H5Aiterate2(tid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end if */
- else {
- if(H5Aiterate2(tid, H5_INDEX_NAME, sort_order, NULL, dump_attr_cb, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end else */
-
- indent -= COL;
-
-done:
- end_obj(dump_header_format->datatypeend, dump_header_format->datatypeblockend);
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_group
- *
- * Purpose: Dump everything within the specified group
- *
- * Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- *
- * Call to dump_all_cb -- add parameter to select everything.
- *
- * Pedro Vicente, October 1, 2007
- * handle several iteration orders for attributes and groups
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_group(hid_t gid, const char *name)
-{
- H5O_info_t oinfo;
- hid_t dset;
- hid_t type;
- hid_t gcpl_id;
- unsigned crt_order_flags;
- unsigned attr_crt_order_flags;
- char type_name[1024];
- char *tmp = NULL;
-
- if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
- error_msg("error in getting group creation property list ID\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- /* query the group creation properties for attributes */
- if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0) {
- error_msg("error in getting group creation properties\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- /* query the group creation properties */
- if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0) {
- error_msg("error in getting group creation properties\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- if(H5Pclose(gcpl_id) < 0) {
- error_msg("error in closing group creation property list ID\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
- HDstrcpy(tmp, prefix);
- indentation(indent);
- begin_obj(dump_header_format->groupbegin, name, dump_header_format->groupblockbegin);
- indent += COL;
-
- if(display_oid)
- dump_oid(gid);
-
- dump_comment(gid);
-
- if(!HDstrcmp(name, "/") && unamedtype) {
- unsigned u; /* Local index variable */
-
- /* dump unamed type in root group */
- for(u = 0; u < type_table->nobjs; u++)
- if(!type_table->objs[u].recorded) {
- dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
- type = H5Dget_type(dset);
- sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
- dump_function_table->dump_named_datatype_function(type, type_name);
- H5Tclose(type);
- H5Dclose(dset);
- }
- } /* end if */
-
- H5Oget_info(gid, &oinfo);
-
- /* Must check for uniqueness of all objects if we've traversed an elink,
- * otherwise only check if the reference count > 1.
- */
- if(oinfo.rc > 1 || hit_elink) {
- obj_t *found_obj; /* Found object */
-
- found_obj = search_obj(group_table, oinfo.addr);
-
- if (found_obj == NULL) {
- indentation(indent);
- error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
- h5tools_setstatus(EXIT_FAILURE);
- }
- else if (found_obj->displayed) {
- indentation(indent);
- HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
- }
- else {
- found_obj->displayed = TRUE;
- /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
- in the group for attributes, then, sort by creation order, otherwise by name */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
- if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end if */
- else {
- if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_attr_cb, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end else */
-
- /* if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
- in the group, then, sort by creation order, otherwise by name */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
- H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
- else
- H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
- }
- }
-
- else {
- /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
- in the group for attributes, then, sort by creation order, otherwise by name */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
- if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end if */
- else {
- if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_attr_cb, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end else */
-
- /* if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
- in the group, then, sort by creation order, otherwise by name */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
- H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
- else
- H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
- }
-
- indent -= COL;
- indentation(indent);
- end_obj(dump_header_format->groupend, dump_header_format->groupblockend);
- free(tmp);
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_dataset
- *
- * Purpose: Dump the specified data set
- *
- * Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications:
- * Pedro Vicente, 2004, added dataset creation property list display
- * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for
- * other iteration orders
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_dataset(hid_t did, const char *name, struct subset_t *sset)
-{
- hid_t type, space;
- unsigned attr_crt_order_flags;
- hid_t dcpl_id; /* dataset creation property list ID */
-
- if ((dcpl_id = H5Dget_create_plist(did)) < 0) {
- error_msg("error in getting creation property list ID\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- /* query the creation properties for attributes */
- if (H5Pget_attr_creation_order(dcpl_id, &attr_crt_order_flags) < 0) {
- error_msg("error in getting creation properties\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- indentation(indent);
- begin_obj(dump_header_format->datasetbegin, name, dump_header_format->datasetblockbegin);
-
- type = H5Dget_type(did);
- space = H5Dget_space(did);
-
- dump_comment(did);
- dump_datatype(type);
- dump_dataspace(space);
-
- if(display_oid)
- dump_oid(did);
-
- if(display_dcpl)
- dump_dcpl(dcpl_id, type, did);
-
- if(display_data) {
- int data_loop = 1;
- int i;
- if(display_packed_bits)
- data_loop = packed_bits_num;
- for(i=0; i<data_loop; i++) {
- if(display_packed_bits) {
- dump_packed_bits(i, type);
- packed_data_mask = packed_mask[i];
- packed_data_offset = packed_offset[i];
- }
- switch(H5Tget_class(type)) {
- case H5T_TIME:
- indentation(indent + COL);
- HDfprintf(stdout, "DATA{ not yet implemented.}\n");
- break;
-
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_STRING:
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- case H5T_COMPOUND:
- case H5T_REFERENCE:
- case H5T_ENUM:
- case H5T_VLEN:
- case H5T_ARRAY:
- dump_data(did, DATASET_DATA, sset, display_ai);
- break;
-
- default:
- break;
- } /* end switch */
- } /* for(i=0;i<data_loop;i++) */
- }
-
- indent += COL;
-
- if (!bin_output) {
- /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
- in the group for attributes, then, sort by creation order, otherwise by name */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
- if(H5Aiterate2(did, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end if */
- else {
- if(H5Aiterate2(did, H5_INDEX_NAME, sort_order, NULL, dump_attr_cb, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end else */
-
- }
-
- indent -= COL;
-
- H5Tclose(type);
- H5Sclose(space);
- H5Pclose(dcpl_id);
-
- indentation(indent);
- end_obj(dump_header_format->datasetend,dump_header_format->datasetblockend);
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_dims
- *
- * Purpose: Dump the dimensions handed to it in a comma separated list
- *
- * Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 27. February 2001
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_dims(hsize_t *s, int dims)
-{
- int i;
-
- for (i = 0; i < dims; i++) {
- printf(HSIZE_T_FORMAT, s[i]);
-
- if (i + 1 != dims) HDfprintf(stdout, ", ");
- }
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_subsetting_header
- *
- * Purpose: Dump the subsetting header like specified in the DDL.
- *
- * Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 27. February 2001
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_subsetting_header(struct subset_t *sset, int dims)
-{
- indentation(indent);
- HDfprintf(stdout, "%s %s\n", dump_header_format->subsettingbegin, dump_header_format->subsettingblockbegin);
-
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "%s %s ", dump_header_format->startbegin, dump_header_format->startblockbegin);
- dump_dims(sset->start.data, dims);
- HDfprintf(stdout, "%s %s\n", dump_header_format->startend, dump_header_format->startblockend);
-
- indentation(indent);
- HDfprintf(stdout, "%s %s ", dump_header_format->stridebegin, dump_header_format->strideblockbegin);
- dump_dims(sset->stride.data, dims);
- HDfprintf(stdout, "%s %s\n", dump_header_format->strideend, dump_header_format->strideblockend);
-
- indentation(indent);
- HDfprintf(stdout, "%s %s ", dump_header_format->countbegin, dump_header_format->countblockbegin);
-
- if(sset->count.data)
- dump_dims(sset->count.data, dims);
- else
- HDfprintf(stdout, "DEFAULT");
-
- HDfprintf(stdout, "%s %s\n", dump_header_format->countend, dump_header_format->countblockend);
-
- indentation(indent);
- HDfprintf(stdout, "%s %s ", dump_header_format->blockbegin, dump_header_format->blockblockbegin);
-
- if(sset->block.data)
- dump_dims(sset->block.data, dims);
- else
- HDfprintf(stdout, "DEFAULT");
-
- HDfprintf(stdout, "%s %s\n", dump_header_format->blockend, dump_header_format->blockblockend);
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_data
- *
- * Purpose: Dump attribute or dataset data
- *
- * Return: void
- *
- * Programmer: Ruey-Hsia Li
- *
- * Modifications: pvn, print the matrix indices
- * Albert Cheng, 2004/11/18
- * Add --string printing for attributes too.
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
-{
- H5S_class_t space_type;
- int ndims;
- int i;
- hid_t space;
- hid_t type;
- hid_t p_type;
- hsize_t size[64];
- hsize_t alloc_size;
- hsize_t nelmts = 1;
- int depth;
- int stdindent = COL; /* should be 3 */
- int status = -1;
- void *buf = NULL;
- h5tool_format_t *outputformat = &dataformat;
-
- if (fp_format) {
- outputformat->fmt_double = fp_format;
- outputformat->fmt_float = fp_format;
- }
-
- if (nCols==0) {
- outputformat->line_ncols = 65535;
- outputformat->line_per_line = 1;
- }
- else
- outputformat->line_ncols = nCols;
- outputformat->do_escape=display_escape;
- /* print the matrix indices */
- outputformat->pindex=display_index;
-
- /* do not print indices for regions */
- if(obj_data == DATASET_DATA) {
- hid_t f_type = H5Dget_type(obj_id);
-
- if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) {
- /* For the region option, correct the display of indices */
- if (display_region) {
- if (display_index) {
- outputformat->pindex = 1;
- outputformat->idx_fmt = "(%s): ";
- outputformat->idx_n_fmt = HSIZE_T_FORMAT;
- outputformat->idx_sep = ",";
- outputformat->line_pre = "%s";
- }
- else {
- outputformat->pindex = 0;
- outputformat->idx_fmt = "";
- outputformat->idx_n_fmt = "";
- outputformat->idx_sep = "";
- outputformat->line_pre = "";
- }
- }
- else
- outputformat->pindex = 0;
- }
- H5Tclose(f_type);
- }
-
- if (outputformat->pindex) {
- outputformat->idx_fmt = "(%s): ";
- outputformat->idx_n_fmt = HSIZE_T_FORMAT;
- outputformat->idx_sep = ",";
- outputformat->line_pre = "%s";
- }
-
- indent += COL;
-
- /*
- * the depth will tell us how far we need to indent extra. we use to just
- * use indent but with the merging of the tools lib we have to do
- * something different for the lib funtions... the normal indentation is 6
- * so when we don't need any extra indentation, depth will be 0.
- */
- depth = indent / stdindent + 1;
-
- if (sset && obj_data == DATASET_DATA) {
- hid_t f_space = H5Dget_space(obj_id);
-
- dump_subsetting_header(sset, H5Sget_simple_extent_ndims(f_space));
- H5Sclose(f_space);
-
- /* recalculate the depth of the data */
- depth = indent / stdindent + 1;
- }
-
- indentation(indent);
- begin_obj(dump_header_format->databegin, (const char *)NULL, dump_header_format->datablockbegin);
-
- /* Print all the values. */
- if(obj_data == DATASET_DATA) {
- h5tool_format_t string_dataformat;
- char string_prefix[64];
- hid_t f_type = H5Dget_type(obj_id);
-
- if((display_char && H5Tget_size(f_type) == 1) && (H5Tget_class(f_type) == H5T_INTEGER)) {
- /*
- * Print 1-byte integer data as an ASCII character string
- * instead of integers if the `-r' or `--string' command-line
- * option was given.
- *
- * We don't want to modify the global dataformat, so make a
- * copy of it instead.
- */
- string_dataformat = *outputformat;
- string_dataformat.idx_fmt = " ";
- string_dataformat.line_multi_new = 1;
- string_dataformat.line_1st = " %s\"";
- string_dataformat.line_pre = " %s";
- string_dataformat.line_cont = " %s";
- string_dataformat.str_repeat = 8;
- string_dataformat.ascii = TRUE;
- string_dataformat.elmt_suf1 = "";
- string_dataformat.elmt_suf2 = "";
- string_dataformat.line_indent = "";
- strcpy(string_prefix, string_dataformat.line_pre);
- strcat(string_prefix, "\"");
- string_dataformat.line_pre = string_prefix;
- string_dataformat.line_suf = "\"";
- outputformat = &string_dataformat;
- }
-
- status = h5tools_dump_dset(stdout, outputformat, obj_id, -1, sset, depth);
-
- H5Tclose(f_type);
- }
- else {
- /* need to call h5tools_dump_mem for the attribute data */
- space = H5Aget_space(obj_id);
- space_type = H5Sget_simple_extent_type(space);
- if(space_type == H5S_NULL || space_type == H5S_NO_CLASS) {
- status = SUCCEED;
- }
- else {
- char string_prefix[64];
- h5tool_format_t string_dataformat;
- /* VL data special information */
- unsigned int vl_data = 0; /* contains VL datatypes */
-
- type = H5Aget_type(obj_id);
- p_type = h5tools_get_native_type(type);
-
- ndims = H5Sget_simple_extent_dims(space, size, NULL);
-
- /* Check if we have VL data in the dataset's datatype */
- if (h5tools_detect_vlen_str(p_type) == TRUE)
- vl_data = TRUE;
- if (H5Tdetect_class(p_type, H5T_VLEN) == TRUE)
- vl_data = TRUE;
-
- for (i = 0; i < ndims; i++)
- nelmts *= size[i];
-
- alloc_size = nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type));
- assert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/
-
- if(alloc_size) {
- buf = malloc((size_t)alloc_size);
- assert(buf);
-
- if (H5Aread(obj_id, p_type, buf) >= 0)
- if (display_char && H5Tget_size(type) == 1 && H5Tget_class(type) == H5T_INTEGER) {
- /*
- * Print 1-byte integer data as an ASCII character string
- * instead of integers if the `-r' or `--string' command-line
- * option was given.
- *
- * We don't want to modify the global dataformat, so make a
- * copy of it instead.
- */
- string_dataformat = *outputformat;
- string_dataformat.idx_fmt = " ";
- string_dataformat.line_multi_new = 1;
- string_dataformat.line_1st = " %s\"";
- string_dataformat.line_pre = " %s";
- string_dataformat.line_cont = " %s";
- string_dataformat.str_repeat = 8;
- string_dataformat.ascii = TRUE;
- string_dataformat.elmt_suf1 = "";
- string_dataformat.elmt_suf2 = "";
- string_dataformat.line_indent = "";
- strcpy(string_prefix, string_dataformat.line_pre);
- strcat(string_prefix, "\"");
- string_dataformat.line_pre = string_prefix;
- string_dataformat.line_suf = "\"";
- outputformat = &string_dataformat;
- }
-
- status = h5tools_dump_mem(stdout, outputformat, obj_id, p_type, space, buf, depth);
-
- /* Reclaim any VL memory, if necessary */
- if (vl_data)
- H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf);
-
- free(buf);
- }
- else
- status = SUCCEED;
-
- H5Tclose(p_type);
- H5Tclose(type);
- }
- H5Sclose(space);
- }
-
- if (status == FAIL) {
- indentation(indent + COL);
- error_msg("unable to print data\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- indentation(indent);
- end_obj(dump_header_format->dataend, dump_header_format->datablockend);
- indent -= COL;
-
- if (sset && obj_data == DATASET_DATA) {
- indentation(indent);
- end_obj(dump_header_format->subsettingend, dump_header_format->subsettingblockend);
- indent -= COL;
- }
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_oid
- *
- * Purpose: Prints the object ids
- *
- * Return: void
- *
- * Programmer: Patrick Lu
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_oid(hid_t oid)
-{
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s %d %s\n", OBJID, BEGIN, oid, END);
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_packed_bits
- *
- * Purpose: Prints the packed bits offset and length
- *
- * Return: void
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_packed_bits(unsigned int packed_index, hid_t type)
-{
- int packed_bits_size = 0;
-
- hid_t n_type = h5tools_get_native_type(type);
- if(H5Tget_class(n_type)==H5T_INTEGER) {
- if(H5Tequal(n_type, H5T_NATIVE_SCHAR) == TRUE) {
- packed_bits_size = 8 * sizeof(char);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_UCHAR) == TRUE) {
- packed_bits_size = 8 * sizeof(unsigned char);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_SHORT) == TRUE) {
- packed_bits_size = 8 * sizeof(short);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_USHORT) == TRUE) {
- packed_bits_size = 8 * sizeof(unsigned short);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_INT) == TRUE) {
- packed_bits_size = 8 * sizeof(int);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_UINT) == TRUE) {
- packed_bits_size = 8 * sizeof(unsigned int);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_LONG) == TRUE) {
- packed_bits_size = 8 * sizeof(long);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_ULONG) == TRUE) {
- packed_bits_size = 8 * sizeof(unsigned long);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_LLONG) == TRUE) {
- packed_bits_size = 8 * sizeof(long long);
- }
- else if(H5Tequal(n_type, H5T_NATIVE_ULLONG) == TRUE) {
- packed_bits_size = 8 * sizeof(unsigned long long);
- }
- else
- error_msg("Packed Bit not valid for this datatype");
- }
- indentation(indent + COL);
- if ((packed_bits_size>0) && (packed_offset[packed_index] + packed_length[packed_index]) > packed_bits_size) {
- error_msg("Packed Bit offset+length value(%d) too large. Max is %d\n",
- packed_offset[packed_index]+packed_length[packed_index], packed_bits_size);
- packed_mask[packed_index] = 0;
- };
- HDfprintf(stdout, "%s %s=%d %s=%d\n", PACKED_BITS, PACKED_OFFSET, packed_offset[packed_index], PACKED_LENGTH, packed_length[packed_index]);
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_comment
- *
- * Purpose: prints the comment for the the object name
- *
- * Return: void
- *
- * Programmer: pvn
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_comment(hid_t obj_id)
-{
- size_t buf_size = 0;
- ssize_t cmt_bufsize = -1;
- char *comment = NULL;
-
- cmt_bufsize = H5Oget_comment(obj_id, comment, buf_size);
-
- /* call H5Oget_comment again with the correct value.
- * If the call to H5Oget_comment returned an error, skip this block */
- if (cmt_bufsize > 0) {
- comment = (char *)HDmalloc((size_t)(cmt_bufsize+1)); /* new_size including null terminator */
- if(comment) {
- cmt_bufsize = H5Oget_comment(obj_id, comment, cmt_bufsize);
- if(cmt_bufsize > 0) {
- comment[cmt_bufsize] = '\0'; /* necessary because null char is not returned */
- indentation(indent);
- HDfprintf(stdout, "COMMENT \"%s\"\n", comment);
- } /* end if */
- HDfree(comment);
- }
- }
-
-} /* end dump_comment() */
-
-
-/*-------------------------------------------------------------------------
- * Function: dump_fill_value
- *
- * Purpose: prints the fill value
- *
- * Return: void
- *
- * Programmer: pvn
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id)
-{
- h5tools_context_t ctx; /* print context */
- size_t size;
- hid_t n_type;
- hsize_t nelmts = 1;
- void *buf = NULL;
- h5tool_format_t *outputformat = &dataformat;
-
- memset(&ctx, 0, sizeof(ctx));
- ctx.indent_level=2;
-
- n_type = h5tools_get_native_type(type_id);
-
- size = H5Tget_size(n_type);
- buf = malloc(size);
-
- H5Pget_fill_value(dcpl, n_type, buf);
-
- h5tools_dump_simple_data(stdout, outputformat, obj_id, &ctx, START_OF_DATA | END_OF_DATA, nelmts, n_type, buf);
-
- H5Tclose(n_type);
-
- if (buf)
- free (buf);
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: dump_dcpl
- *
- * Purpose: prints several dataset create property list properties
- *
- * Return: void
- *
- * Programmer: pvn
- *
- * Modifications: pvn, March 28, 2008
- * Add a COMPRESSION ratio information for cases when filters are present
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
-{
- int nfilters; /* number of filters */
- unsigned filt_flags; /* filter flags */
- H5Z_filter_t filtn; /* filter identification number */
- unsigned cd_values[20]; /* filter client data values */
- size_t cd_nelmts; /* filter client number of values */
- char f_name[256]; /* filter name */
- unsigned szip_options_mask;
- unsigned szip_pixels_per_block;
- hsize_t chsize[64]; /* chunk size in elements */
- int rank; /* rank */
- char name[256]; /* external file name */
- off_t offset; /* offset of external file */
- hsize_t size; /* size of external file */
- H5D_fill_value_t fvstatus;
- H5D_alloc_time_t at;
- H5D_fill_time_t ft;
- hsize_t storage_size;
- haddr_t ioffset;
- int i;
- unsigned j;
-
- storage_size = H5Dget_storage_size(obj_id);
- nfilters = H5Pget_nfilters(dcpl_id);
- ioffset = H5Dget_offset(obj_id);
- HDstrcpy(f_name,"\0");
-
- /*-------------------------------------------------------------------------
- * STORAGE_LAYOUT
- *-------------------------------------------------------------------------
- */
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s\n", STORAGE_LAYOUT, BEGIN);
-
- if (H5D_CHUNKED == H5Pget_layout(dcpl_id)) {
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s ", CHUNKED);
-
- rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize);
- HDfprintf(stdout,"%s %Hu", dump_header_format->dataspacedimbegin, chsize[0]);
- for (i=1; i<rank; i++)
- HDfprintf(stdout, ", %Hu", chsize[i]);
- HDfprintf(stdout, " %s\n", dump_header_format->dataspacedimend);
- indentation(indent + COL);
-
- /* if there are filters, print a compression ratio */
- if (nfilters) {
- hsize_t dims[H5S_MAX_RANK];
- hsize_t nelmts = 1;
- double ratio = 0;
- int ok = 0;
-
- hid_t tid = H5Dget_type(obj_id);
- hid_t sid = H5Dget_space(obj_id);
- size_t datum_size = H5Tget_size(tid);
- int ndims = H5Sget_simple_extent_dims(sid, dims, NULL);
-
- /* only print the compression ratio for these filters */
- for (i = 0; i < nfilters; i++) {
- cd_nelmts = NELMTS(cd_values);
- filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts,
- cd_values, sizeof(f_name), f_name, NULL);
-
- switch (filtn) {
- case H5Z_FILTER_DEFLATE:
- case H5Z_FILTER_SZIP:
- case H5Z_FILTER_NBIT:
- case H5Z_FILTER_SCALEOFFSET:
- ok = 1;
- break;
- }
- }
-
- if (ndims && ok) {
- hsize_t uncomp_size;
-
- for (i = 0; i < ndims; i++) {
- nelmts *= dims[i];
- }
- uncomp_size = nelmts * datum_size;
-
- /* compression ratio = uncompressed size / compressed size */
-
- if (storage_size != 0)
- ratio = (double) uncomp_size / (double) storage_size;
-
- HDfprintf(stdout, "SIZE %Hu (%.3f:1 COMPRESSION)\n ", storage_size, ratio);
-
- }
- else
- HDfprintf(stdout, "SIZE %Hu\n ", storage_size);
-
- H5Sclose(sid);
- H5Tclose(tid);
-
- }
- else {
- HDfprintf(stdout, "SIZE %Hu\n ", storage_size);
- }
-
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
- }
- else if (H5D_COMPACT == H5Pget_layout(dcpl_id)) {
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n", COMPACT);
-
- indentation(indent + COL);
- HDfprintf(stdout, "SIZE %Hu\n", storage_size);
-
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
- }
- else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl_id)) {
- int next;
-
- next = H5Pget_external_count(dcpl_id);
-
- /*-------------------------------------------------------------------------
- * EXTERNAL_FILE
- *-------------------------------------------------------------------------
- */
- if (next) {
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n", CONTIGUOUS);
-
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s\n", EXTERNAL, BEGIN);
-
- /*start indent */
- indent += COL;
- for ( j=0; j<(unsigned)next; j++) {
- H5Pget_external(dcpl_id,j,sizeof(name),name,&offset,&size);
- indentation(indent + COL);
- HDfprintf(stdout,"FILENAME %s SIZE %Hu OFFSET %ld\n",name,size,offset);
- }
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
-
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
- }
- else {
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n", CONTIGUOUS);
-
- indentation(indent + COL);
- HDfprintf(stdout,"SIZE %Hu\n", storage_size);
- indentation(indent + COL);
- HDfprintf(stdout,"OFFSET %Hu\n", ioffset);
-
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
- }
- }
- /*-------------------------------------------------------------------------
- * FILTERS
- *-------------------------------------------------------------------------
- */
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s\n", FILTERS, BEGIN);
- indent += COL;
-
- if (nfilters) {
- for (i=0; i<nfilters; i++) {
- cd_nelmts = NELMTS(cd_values);
- filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts,
- cd_values, sizeof(f_name), f_name, NULL);
-
- switch (filtn) {
- case H5Z_FILTER_DEFLATE:
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s %s %d %s\n", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END);
- break;
- case H5Z_FILTER_SHUFFLE:
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n", SHUFFLE);
- break;
- case H5Z_FILTER_FLETCHER32:
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n", FLETCHER32);
- break;
- case H5Z_FILTER_SZIP:
- {
- szip_options_mask=cd_values[0];;
- szip_pixels_per_block=cd_values[1];
-
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s\n",SZIP, BEGIN);
-
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- HDfprintf(stdout, "PIXELS_PER_BLOCK %d\n", szip_pixels_per_block);
-
- indentation(indent + COL);
- if (szip_options_mask & H5_SZIP_CHIP_OPTION_MASK)
- HDfprintf(stdout, "MODE %s\n", "HARDWARE");
- else if (szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK)
- HDfprintf(stdout, "MODE %s\n", "K13");
-
- indentation(indent + COL);
- if (szip_options_mask & H5_SZIP_EC_OPTION_MASK)
- HDfprintf(stdout, "CODING %s\n", "ENTROPY");
- else if (szip_options_mask & H5_SZIP_NN_OPTION_MASK)
- HDfprintf(stdout, "CODING %s\n", "NEAREST NEIGHBOUR");
-
- indentation(indent + COL);
- if (szip_options_mask & H5_SZIP_LSB_OPTION_MASK)
- HDfprintf(stdout, "BYTE_ORDER %s\n", "LSB");
- else if (szip_options_mask & H5_SZIP_MSB_OPTION_MASK)
- HDfprintf(stdout, "BYTE_ORDER %s\n", "MSB");
-
- indentation(indent + COL);
- if (szip_options_mask & H5_SZIP_RAW_OPTION_MASK)
- HDfprintf(stdout, "HEADER %s\n", "RAW");
-
- /*end indent */
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
- }
- break;
- case H5Z_FILTER_NBIT:
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n", NBIT);
- break;
- case H5Z_FILTER_SCALEOFFSET:
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s %s %d %s\n", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END);
- break;
- default:
- indentation(indent + COL);
- if (H5Zfilter_avail(filtn))
- HDfprintf(stdout, "%s %s\n", "USER_REGISTERED_FILTER", BEGIN);
- else
- HDfprintf(stdout, "%s %s\n", "UNKNOWN_FILTER", BEGIN);
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- HDfprintf(stdout, "FILTER_ID %d\n", filtn);
- if (f_name[0]!='\0') {
- indentation(indent + COL);
- HDfprintf(stdout, "COMMENT %s\n", f_name);
- }
- if (cd_nelmts) {
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s ","PARAMS", BEGIN);
- for (j=0; j<cd_nelmts; j++)
- HDfprintf(stdout, "%d ", cd_values[j]);
- HDfprintf(stdout, "%s\n", END);
- }
- break;
- }/*switch*/
- } /*i*/
- }/*nfilters*/
- else {
- indentation(indent + COL);
- HDfprintf(stdout, "NONE\n");
- }
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
-
- /*-------------------------------------------------------------------------
- * FILLVALUE
- *-------------------------------------------------------------------------
- */
- indentation(indent + COL);
- HDfprintf(stdout, "%s %s\n", FILLVALUE, BEGIN);
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- HDfprintf(stdout, "FILL_TIME ");
- H5Pget_fill_time(dcpl_id, &ft);
- switch ( ft ) {
- case H5D_FILL_TIME_ALLOC:
- HDfprintf(stdout, "%s", "H5D_FILL_TIME_ALLOC\n");
- break;
- case H5D_FILL_TIME_NEVER:
- HDfprintf(stdout, "%s", "H5D_FILL_TIME_NEVER\n");
- break;
- case H5D_FILL_TIME_IFSET:
- HDfprintf(stdout, "%s", "H5D_FILL_TIME_IFSET\n");
- break;
- default:
- assert(0);
- break;
- }
- indentation(indent + COL);
- HDfprintf(stdout, "%s ", "VALUE ");
- H5Pfill_value_defined(dcpl_id, &fvstatus);
- if (fvstatus == H5D_FILL_VALUE_UNDEFINED)
- HDfprintf(stdout, "%s\n", "H5D_FILL_VALUE_UNDEFINED");
- else
- dump_fill_value(dcpl_id,type_id,obj_id);
- /* end indent */
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "\n");
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
-
- /*-------------------------------------------------------------------------
- * ALLOCATION_TIME
- *-------------------------------------------------------------------------
- */
- indentation(indent + COL);
- HDfprintf(stdout, "ALLOCATION_TIME %s\n",BEGIN);
- /*start indent */
- indent += COL;
- indentation(indent + COL);
- H5Pget_alloc_time(dcpl_id, &at);
- switch (at) {
- case H5D_ALLOC_TIME_EARLY:
- HDfprintf(stdout, "%s", "H5D_ALLOC_TIME_EARLY\n");
- break;
- case H5D_ALLOC_TIME_INCR:
- HDfprintf(stdout, "%s", "H5D_ALLOC_TIME_INCR\n");
- break;
- case H5D_ALLOC_TIME_LATE:
- HDfprintf(stdout, "%s", "H5D_ALLOC_TIME_LATE\n");
- break;
- default:
- assert(0);
- break;
- }
- /* end indent */
- indent -= COL;
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n",END);
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_fcpl
- *
- * Purpose: prints file creation property list information
- *
- * Return: void
- *
- * Programmer: pvn
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-dump_fcpl(hid_t fid)
-{
- hid_t fcpl; /* file creation property list ID */
- hid_t fapl; /* file access property list ID */
- hsize_t userblock; /* userblock size retrieved from FCPL */
- size_t off_size; /* size of offsets in the file */
- size_t len_size; /* size of lengths in the file */
- hid_t fdriver; /* file driver */
- char dname[32]; /* buffer to store driver name */
- unsigned sym_lk; /* symbol table B-tree leaf 'K' value */
- unsigned sym_ik; /* symbol table B-tree internal 'K' value */
- unsigned istore_ik; /* indexed storage B-tree internal 'K' value */
- H5F_file_space_type_t fs_strategy; /* file space strategy */
- hsize_t fs_threshold; /* free-space section threshold */
- H5F_info2_t finfo; /* file information */
-
- fcpl=H5Fget_create_plist(fid);
- H5Fget_info2(fid, &finfo);
- H5Pget_userblock(fcpl,&userblock);
- H5Pget_sizes(fcpl,&off_size,&len_size);
- H5Pget_sym_k(fcpl,&sym_ik,&sym_lk);
- H5Pget_istore_k(fcpl,&istore_ik);
- H5Pget_file_space(fcpl, &fs_strategy, &fs_threshold);
- H5Pclose(fcpl);
- fapl=h5_fileaccess();
- fdriver=H5Pget_driver(fapl);
- H5Pclose(fapl);
-
- /*-------------------------------------------------------------------------
- * SUPER_BLOCK
- *-------------------------------------------------------------------------
- */
- HDfprintf(stdout, "%s %s\n",SUPER_BLOCK, BEGIN);
- indentation(indent + COL);
- HDfprintf(stdout, "%s %u\n","SUPERBLOCK_VERSION", finfo.super.version);
- indentation(indent + COL);
- HDfprintf(stdout, "%s %u\n","FREELIST_VERSION", finfo.free.version);
- indentation(indent + COL);
- HDfprintf(stdout, "%s %u\n","SYMBOLTABLE_VERSION", 0); /* Retain this for backward compatibility, for now (QAK) */
- indentation(indent + COL);
- HDfprintf(stdout, "%s %u\n","OBJECTHEADER_VERSION", finfo.sohm.version);
- indentation(indent + COL);
- HDfprintf(stdout,"%s %Hd\n","OFFSET_SIZE", (long long)off_size);
- indentation(indent + COL);
- HDfprintf(stdout,"%s %Hd\n","LENGTH_SIZE", (long long)len_size);
- indentation(indent + COL);
- HDfprintf(stdout, "%s %u\n","BTREE_RANK", sym_ik);
- indentation(indent + COL);
- HDfprintf(stdout, "%s %d\n","BTREE_LEAF", sym_lk);
-
- if (H5FD_CORE==fdriver)
- HDstrcpy(dname,"H5FD_CORE");
-#ifdef H5_HAVE_DIRECT
- else if (H5FD_DIRECT==fdriver)
- HDstrcpy(dname,"H5FD_DIRECT");
-#endif
- else if (H5FD_FAMILY==fdriver)
- HDstrcpy(dname,"H5FD_FAMILY");
- else if (H5FD_LOG==fdriver)
- HDstrcpy(dname,"H5FD_LOG");
- else if (H5FD_MPIO==fdriver)
- HDstrcpy(dname,"H5FD_MPIO");
- else if (H5FD_MULTI==fdriver)
- HDstrcpy(dname,"H5FD_MULTI");
- else if (H5FD_SEC2==fdriver)
- HDstrcpy(dname,"H5FD_SEC2");
- else if (H5FD_STDIO==fdriver)
- HDstrcpy(dname,"H5FD_STDIO");
-#ifdef H5_HAVE_STREAM
- else if (H5FD_STREAM==fdriver)
- HDstrcpy(dname,"H5FD_STREAM");
-#endif
- else
- HDstrcpy(dname,"Unknown driver");
-
- /* Take out this because the driver used can be different from the
- * standard output. */
- /*indentation(indent + COL);
- HDfprintf(stdout, "%s %s\n","FILE_DRIVER", dname);*/
- indentation(indent + COL);
- HDfprintf(stdout, "%s %u\n","ISTORE_K", istore_ik);
-
- indentation(indent + COL);
- if(fs_strategy == H5F_FILE_SPACE_ALL_PERSIST)
- HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_ALL_PERSIST");
- else if(fs_strategy == H5F_FILE_SPACE_ALL)
- HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_ALL");
- else if(fs_strategy == H5F_FILE_SPACE_AGGR_VFD)
- HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_AGGR_VFD");
- else if(fs_strategy == H5F_FILE_SPACE_VFD)
- HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_VFD");
- else
- HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "Unknown strategy");
- indentation(indent + COL);
- HDfprintf(stdout, "%s %Hu\n","FREE_SPACE_THRESHOLD", fs_threshold);
-
- HDfprintf(stdout, "%s\n",END);
-
- /*-------------------------------------------------------------------------
- * USER_BLOCK
- *-------------------------------------------------------------------------
- */
- HDfprintf(stdout, "USER_BLOCK %s\n",BEGIN);
- indentation(indent + COL);
- HDfprintf(stdout,"%s %Hu\n","USERBLOCK_SIZE", userblock);
- HDfprintf(stdout, "%s\n",END);
-}
-
-/*-------------------------------------------------------------------------
- * Function: dump_fcontents
- *
- * Purpose: prints all objects
- *
- * Return: void
- *
- * Programmer: pvn
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-
-static void dump_fcontents(hid_t fid)
-{
- HDfprintf(stdout, "%s %s\n",FILE_CONTENTS, BEGIN);
-
- /* special case of unamed types in root group */
- if (unamedtype) {
- unsigned u;
-
- for (u = 0; u < type_table->nobjs; u++) {
- if (!type_table->objs[u].recorded)
- HDfprintf(stdout, " %-10s /#"H5_PRINTF_HADDR_FMT"\n", "datatype", type_table->objs[u].objno);
- }
- }
-
- /* print objects in the files */
- h5trav_print(fid);
-
- HDfprintf(stdout, " %s\n",END);
-}
-
-/*-------------------------------------------------------------------------
* Function: set_output_file
*
* Purpose: Open fname as the output file for dataset raw data.
@@ -3532,29 +594,6 @@ set_sort_order(const char *form)
}
/*-------------------------------------------------------------------------
- * Function: handle_attributes
- *
- * Purpose: Handle the attributes from the command.
- *
- * Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications:
- *
- * PVN, May 2008
- * add an extra parameter PE, to allow printing/not printing of error messages
- *
- *-------------------------------------------------------------------------
- */
-static void
-handle_attributes(hid_t fid, const char *attr, void UNUSED * data, int UNUSED pe, const char UNUSED *display_name)
-{
- dump_selected_attr(fid, attr);
-}
-
-/*-------------------------------------------------------------------------
* Function: parse_hsize_list
*
* Purpose: Parse a list of comma or space separated integers and return
@@ -3783,365 +822,6 @@ parse_mask_list(const char *h_list)
return SUCCEED;
}
-/*-------------------------------------------------------------------------
- * Function: handle_datasets
- *
- * Purpose: Handle the datasets from the command.
- *
- * Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications:
- * Pedro Vicente, Tuesday, January 15, 2008
- * check for block overlap\
- *
- * Pedro Vicente, May 8, 2008
- * added a flag PE that prints/not prints error messages
- * added for cases of external links not found, to avoid printing of
- * objects not found, since external links are dumped on a trial error basis
- *
- *-------------------------------------------------------------------------
- */
-static void
-handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *display_name)
-{
- H5O_info_t oinfo;
- hid_t dsetid;
- struct subset_t *sset = (struct subset_t *)data;
- const char *real_name = display_name ? display_name : dset;
-
- if((dsetid = H5Dopen2(fid, dset, H5P_DEFAULT)) < 0) {
- if (pe) {
- begin_obj(dump_header_format->datasetbegin, real_name, dump_header_format->datasetblockbegin);
- indentation(COL);
- error_msg("unable to open dataset \"%s\"\n", real_name);
- end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend);
- h5tools_setstatus(EXIT_FAILURE);
- }
- return;
- } /* end if */
-
- if(sset) {
- unsigned int i;
- hid_t sid = H5Dget_space(dsetid);
- int ndims = H5Sget_simple_extent_ndims(sid);
-
- H5Sclose(sid);
- if(ndims < 0) {
- error_msg("H5Sget_simple_extent_ndims failed\n");
- h5tools_setstatus(EXIT_FAILURE);
- return;
- }
-
- if(!sset->start.data || !sset->stride.data || !sset->count.data || !sset->block.data) {
- /* they didn't specify a ``stride'' or ``block''. default to 1 in all
- * dimensions */
- if(!sset->start.data) {
- /* default to (0, 0, ...) for the start coord */
- sset->start.data = (hsize_t *)calloc((size_t)ndims, sizeof(hsize_t));
- sset->start.len = ndims;
- }
-
- if(!sset->stride.data) {
- sset->stride.data = (hsize_t *)calloc((size_t)ndims, sizeof(hsize_t));
- sset->stride.len = ndims;
- for (i = 0; i < ndims; i++)
- sset->stride.data[i] = 1;
- }
-
- if(!sset->count.data) {
- sset->count.data = (hsize_t *)calloc((size_t)ndims, sizeof(hsize_t));
- sset->count.len = ndims;
- for (i = 0; i < ndims; i++)
- sset->count.data[i] = 1;
- }
-
- if(!sset->block.data) {
- sset->block.data = (hsize_t *)calloc((size_t)ndims, sizeof(hsize_t));
- sset->block.len = ndims;
- for (i = 0; i < ndims; i++)
- sset->block.data[i] = 1;
- }
- }
-
- /*-------------------------------------------------------------------------
- * check for dimension overflow
- *-------------------------------------------------------------------------
- */
- if(sset->start.len > ndims) {
- error_msg("number of start dims (%u) exceed dataset dims (%u)\n", sset->start.len, ndims);
- h5tools_setstatus(EXIT_FAILURE);
- return;
- }
- if(sset->stride.len > ndims) {
- error_msg("number of stride dims (%u) exceed dataset dims (%u)\n", sset->stride.len, ndims);
- h5tools_setstatus(EXIT_FAILURE);
- return;
- }
- if(sset->count.len > ndims) {
- error_msg("number of count dims (%u) exceed dataset dims (%u)\n", sset->count.len, ndims);
- h5tools_setstatus(EXIT_FAILURE);
- return;
- }
- if(sset->block.len > ndims) {
- error_msg("number of block dims (%u) exceed dataset dims (%u)\n", sset->block.len, ndims);
- h5tools_setstatus(EXIT_FAILURE);
- return;
- }
-
- /*-------------------------------------------------------------------------
- * check for block overlap
- *-------------------------------------------------------------------------
- */
- for(i = 0; i < ndims; i++) {
- if(sset->count.data[i] > 1) {
- if(sset->stride.data[i] < sset->block.data[i]) {
- error_msg("wrong subset selection; blocks overlap\n");
- h5tools_setstatus(EXIT_FAILURE);
- return;
- } /* end if */
- } /* end if */
- } /* end for */
- } /* end if */
-
-
- H5Oget_info(dsetid, &oinfo);
- if(oinfo.rc > 1 || hit_elink) {
- obj_t *found_obj; /* Found object */
-
- found_obj = search_obj(dset_table, oinfo.addr);
-
- if(found_obj) {
- if (found_obj->displayed) {
- indentation(indent);
- begin_obj(dump_header_format->datasetbegin, real_name, dump_header_format->datasetblockbegin);
- indentation(indent + COL);
- HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
- indentation(indent);
- end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend);
- }
- else {
- found_obj->displayed = TRUE;
- dump_dataset(dsetid, real_name, sset);
- }
- }
- else
- h5tools_setstatus(EXIT_FAILURE);
- }
- else
- dump_dataset(dsetid, real_name, sset);
-
- if(H5Dclose(dsetid) < 0)
- h5tools_setstatus(EXIT_FAILURE);
-}
-
-/*-------------------------------------------------------------------------
- * Function: handle_groups
- *
- * Purpose: Handle the groups from the command.
- *
- * Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications: Pedro Vicente, September 26, 2007
- * handle creation order
- *
- * Pedro Vicente, May 8, 2008
- * added a flag PE that prints/not prints error messages
- * added for cases of external links not found, to avoid printing of
- * objects not found, since external links are dumped on a trial error basis
- *
- *-------------------------------------------------------------------------
- */
-static void
-handle_groups(hid_t fid, const char *group, void UNUSED *data, int pe, const char *display_name)
-{
- hid_t gid;
- const char *real_name = display_name ? display_name : group;
-
- if((gid = H5Gopen2(fid, group, H5P_DEFAULT)) < 0) {
- if (pe) {
- begin_obj(dump_header_format->groupbegin, real_name, dump_header_format->groupblockbegin);
- indentation(COL);
- error_msg("unable to open group \"%s\"\n", real_name);
- end_obj(dump_header_format->groupend, dump_header_format->groupblockend);
- h5tools_setstatus(EXIT_FAILURE);
- }
- }
- else {
- size_t new_len = HDstrlen(group) + 1;
-
- if(prefix_len <= new_len) {
- prefix_len = new_len;
- prefix = (char *)HDrealloc(prefix, prefix_len);
- } /* end if */
-
- HDstrcpy(prefix, group);
-
- dump_group(gid, real_name);
-
- if(H5Gclose(gid) < 0)
- h5tools_setstatus(EXIT_FAILURE);
- } /* end else */
-} /* end handle_groups() */
-
-/*-------------------------------------------------------------------------
- * Function: handle_links
- *
- * Purpose: Handle soft or UD links from the command.
- *
- * Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-handle_links(hid_t fid, const char *links, void UNUSED * data, int UNUSED pe, const char UNUSED *display_name)
-{
- H5L_info_t linfo;
-
- if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) {
- error_msg("unable to get link info from \"%s\"\n", links);
- h5tools_setstatus(EXIT_FAILURE);
- }
- else if(linfo.type == H5L_TYPE_HARD) {
- error_msg("\"%s\" is a hard link\n", links);
- h5tools_setstatus(EXIT_FAILURE);
- }
- else {
- char *buf = (char *)HDmalloc(linfo.u.val_size);
-
- switch(linfo.type) {
- case H5L_TYPE_SOFT: /* Soft link */
- begin_obj(dump_header_format->softlinkbegin, links, dump_header_format->softlinkblockbegin);
- indentation(COL);
- if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0)
- HDfprintf(stdout, "LINKTARGET \"%s\"\n", buf);
- else {
- error_msg("h5dump error: unable to get link value for \"%s\"\n", links);
- h5tools_setstatus(EXIT_FAILURE);
- }
- end_obj(dump_header_format->softlinkend, dump_header_format->softlinkblockend);
- break;
-
- case H5L_TYPE_EXTERNAL:
- begin_obj(dump_header_format->udlinkbegin, links, dump_header_format->udlinkblockbegin);
- indentation(COL);
- begin_obj(dump_header_format->extlinkbegin, links, dump_header_format->extlinkblockbegin);
- if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) {
- const char *elink_file;
- const char *elink_path;
-
- if(H5Lunpack_elink_val(buf, linfo.u.val_size, NULL, &elink_file, &elink_path)>=0) {
- indentation(COL);
- HDfprintf(stdout, "LINKCLASS %d\n", linfo.type);
- indentation(COL);
- HDfprintf(stdout, "TARGETFILE \"%s\"\n", elink_file);
- indentation(COL);
- HDfprintf(stdout, "TARGETPATH \"%s\"\n", elink_path);
- }
- else {
- error_msg("h5dump error: unable to unpack external link value for \"%s\"\n", links);
- h5tools_setstatus(EXIT_FAILURE);
- }
- }
- else {
- error_msg("h5dump error: unable to get external link value for \"%s\"\n", links);
- h5tools_setstatus(EXIT_FAILURE);
- }
- end_obj(dump_header_format->extlinkend, dump_header_format->extlinkblockend);
- break;
-
- default:
- begin_obj(dump_header_format->udlinkbegin, links, dump_header_format->udlinkblockbegin);
- indentation(COL);
- begin_obj(dump_header_format->udlinkbegin, links, dump_header_format->udlinkblockbegin);
- indentation(COL);
- HDfprintf(stdout, "LINKCLASS %d\n", linfo.type);
- end_obj(dump_header_format->udlinkend, dump_header_format->udlinkblockend);
- break;
- } /* end switch */
- HDfree(buf);
- } /* end else */
-}
-
-/*-------------------------------------------------------------------------
- * Function: handle_datatypes
- *
- * Purpose: Handle the datatypes from the command.
- *
- * Return: void
- *
- * Programmer: Bill Wendling
- * Tuesday, 9. January 2001
- *
- * Modifications:
- *
- * Pedro Vicente, May 8, 2008
- * added a flag PE that prints/not prints error messages
- * added for cases of external links not found, to avoid printing of
- * objects not found, since external links are dumped on a trial error basis
- *
- *-------------------------------------------------------------------------
- */
-static void
-handle_datatypes(hid_t fid, const char *type, void UNUSED * data, int pe, const char *display_name)
-{
- hid_t type_id;
- const char *real_name = display_name ? display_name : type;
-
- if((type_id = H5Topen2(fid, type, H5P_DEFAULT)) < 0) {
- /* check if type is unamed datatype */
- unsigned idx = 0;
-
- while(idx < type_table->nobjs ) {
- char name[128];
-
- if(!type_table->objs[idx].recorded) {
- /* unamed datatype */
- sprintf(name, "/#"H5_PRINTF_HADDR_FMT, type_table->objs[idx].objno);
-
- if(!HDstrcmp(name, real_name))
- break;
- } /* end if */
-
- idx++;
- } /* end while */
-
- if(idx == type_table->nobjs) {
- if (pe) {
- /* unknown type */
- begin_obj(dump_header_format->datatypebegin, real_name, dump_header_format->datatypeblockbegin);
- indentation(COL);
- error_msg("unable to open datatype \"%s\"\n", real_name);
- end_obj(dump_header_format->datatypeend, dump_header_format->datatypeblockend);
- h5tools_setstatus(EXIT_FAILURE);
- }
- }
- else {
- hid_t dsetid = H5Dopen2(fid, type_table->objs[idx].objname, H5P_DEFAULT);
- type_id = H5Dget_type(dsetid);
- dump_named_datatype(type_id, real_name);
- H5Tclose(type_id);
- H5Dclose(dsetid);
- }
- }
- else {
- dump_named_datatype(type_id, real_name);
-
- if(H5Tclose(type_id) < 0)
- h5tools_setstatus(EXIT_FAILURE);
- }
-}
-
/*-------------------------------------------------------------------------
* Function: free_handler
@@ -4280,7 +960,7 @@ parse_start:
goto done;
break;
case 'w':
- nCols = HDatoi(opt_arg);
+ h5tools_nCols = HDatoi(opt_arg);
last_was_dset = FALSE;
break;
case 'a':
@@ -4421,25 +1101,29 @@ parse_start:
/* select XML output */
doxml = TRUE;
useschema = TRUE;
- dump_header_format = NULL;
+ h5tools_dump_header_format = NULL;
dump_function_table = &xml_function_table;
+ h5tools_nCols = 0;
break;
case 'u':
doxml = TRUE;
useschema = FALSE;
xmlnsprefix = "";
- dump_header_format = NULL;
+ h5tools_dump_header_format = NULL;
dump_function_table = &xml_function_table;
+ h5tools_nCols = 0;
break;
case 'D':
/* specify alternative XML DTD or schema */
/* To Do: check format of this value? */
xml_dtd_uri = opt_arg;
+ h5tools_nCols = 0;
break;
case 'm':
/* specify alternative floating point printing format */
fp_format = opt_arg;
+ h5tools_nCols = 0;
break;
case 'X':
@@ -4455,6 +1139,7 @@ parse_start:
else {
xmlnsprefix = opt_arg;
}
+ h5tools_nCols = 0;
break;
/** end XML parameters **/
@@ -4630,8 +1315,9 @@ main(int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- dump_header_format = &standardformat;
+ h5tools_dump_header_format = &h5tools_standardformat;
dump_function_table = &ddl_function_table;
+ dump_indent = 0;
/* Disable error reporting */
H5Eget_auto2(H5E_DEFAULT, &func, &edata);
@@ -4759,7 +1445,7 @@ main(int argc, const char *argv[])
/* start to dump - display file header information */
if (!doxml) {
- begin_obj(dump_header_format->filebegin, fname, dump_header_format->fileblockbegin);
+ begin_obj(h5tools_dump_header_format->filebegin, fname, h5tools_dump_header_format->fileblockbegin);
}
else {
HDfprintf(stdout, "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n");
@@ -4794,8 +1480,10 @@ main(int argc, const char *argv[])
if (!doxml) {
if (display_fi) {
+ HDfprintf(stdout, "\n");
dump_fcontents(fid);
- end_obj(dump_header_format->fileend,dump_header_format->fileblockend);
+ end_obj(h5tools_dump_header_format->fileend,h5tools_dump_header_format->fileblockend);
+ HDfprintf(stdout, "\n");
goto done;
}
@@ -4804,13 +1492,17 @@ main(int argc, const char *argv[])
}
if(display_all) {
- if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0)
- {
+ if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) {
error_msg("unable to open root group\n");
h5tools_setstatus(EXIT_FAILURE);
}
else {
+ if (!doxml)
+ dump_indent += COL;
dump_function_table->dump_group_function(gid, "/" );
+ if (!doxml)
+ dump_indent -= COL;
+ HDfprintf(stdout, "\n");
}
if(H5Gclose(gid) < 0) {
@@ -4827,13 +1519,17 @@ main(int argc, const char *argv[])
goto done;
} /* end if */
- for(i = 0; i < argc; i++)
- if(hand[i].func)
+ for(i = 0; i < argc; i++) {
+ if(hand[i].func) {
hand[i].func(fid, hand[i].obj, hand[i].subset_info, 1, NULL);
+ }
+ }
+ HDfprintf(stdout, "\n");
}
if (!doxml) {
- end_obj(dump_header_format->fileend, dump_header_format->fileblockend);
+ end_obj(h5tools_dump_header_format->fileend, h5tools_dump_header_format->fileblockend);
+ HDfprintf(stdout, "\n");
}
else {
HDfprintf(stdout, "</%sHDF5-File>\n", xmlnsprefix);
@@ -4863,2452 +1559,6 @@ done:
}
/*-------------------------------------------------------------------------
- * Function: print_enum
- *
- * Purpose: prints the enum data
- *
- * Return: void
- *
- * Programmer: Patrick Lu
- *
- * Modifications:
- *
- * NOTE: this function was taken from h5ls. should be moved into the toolslib
- *
- *-----------------------------------------------------------------------*/
-static void
-print_enum(hid_t type)
-{
- char **name = NULL; /*member names */
- unsigned char *value = NULL; /*value array */
- unsigned char *copy = NULL; /*a pointer to value array */
- unsigned nmembs; /*number of members */
- int nchars; /*number of output characters */
- hid_t super; /*enum base integer type */
- hid_t native = -1; /*native integer datatype */
- size_t dst_size; /*destination value type size */
- unsigned i;
-
- nmembs = (unsigned) H5Tget_nmembers(type);
- super = H5Tget_super(type);
-
- /*
- * Determine what datatype to use for the native values. To simplify
- * things we entertain three possibilities:
- * 1. long long -- the largest native signed integer
- * 2. unsigned long long -- the largest native unsigned integer
- * 3. raw format
- */
- if (H5Tget_size(type) <= sizeof(long long)) {
- dst_size = sizeof(long long);
-
- if (H5T_SGN_NONE == H5Tget_sign(type))
- native = H5T_NATIVE_ULLONG;
- else
- native = H5T_NATIVE_LLONG;
- } /* end if */
- else
- dst_size = H5Tget_size(type);
-
- /* Get the names and raw values of all members */
- name = (char **) calloc(nmembs, sizeof(char *));
- value = (unsigned char *) calloc(nmembs, MAX(H5Tget_size(type), dst_size));
-
- for (i = 0; i < nmembs; i++) {
- name[i] = H5Tget_member_name(type, i);
- H5Tget_member_value(type, i, value + i * H5Tget_size(type));
- }
-
- /* Convert values to native datatype */
- if (native > 0)
- H5Tconvert(super, native, nmembs, value, NULL, H5P_DEFAULT);
-
- /*
- * Sort members by increasing value
- * ***not implemented yet***
- */
-
- /* Print members */
- for (i = 0; i < nmembs; i++) {
- indentation(indent + COL);
- nchars = HDfprintf(stdout, "\"%s\"", name[i]);
- HDfprintf(stdout, "%*s ", MAX(0, 16 - nchars), "");
-
- if (native < 0) {
- size_t j;
-
- HDfprintf(stdout, "0x");
-
- for (j = 0; j < dst_size; j++)
- HDfprintf(stdout, "%02x", value[i * dst_size + j]);
- }
- else if (H5T_SGN_NONE == H5Tget_sign(native)) {
- /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
- *strangely, unless use another pointer "copy".*/
- copy = value + i * dst_size;
- HDfprintf(stdout, "%" H5_PRINTF_LL_WIDTH "u", *((unsigned long long *) ((void *) copy)));
- }
- else {
- /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
- *strangely, unless use another pointer "copy".*/
- copy = value + i * dst_size;
- HDfprintf(stdout, "%" H5_PRINTF_LL_WIDTH "d", *((long long *) ((void *) copy)));
- }
-
- HDfprintf(stdout, ";\n");
- }
-
- /* Release resources */
- for (i = 0; i < nmembs; i++)
- free(name[i]);
-
- free(name);
- free(value);
- H5Tclose(super);
-
- if (0 == nmembs)
- HDfprintf(stdout, "\n%*s <empty>", indent + 4, "");
-}
-
-
-/*
- * create a string suitable for and XML NCNAME. Uses the
- * object reference to create the string.
- *
- * 'gen'; 0 - return null if not found
- * 1 - generate a fake entry and return fake id.
- */
-int
-xml_name_to_XID(const char *str , char *outstr, int outlen, int gen)
-{
- haddr_t objno; /* Object ID for object at path */
-
- if (outlen < 22) return 1;
-
- objno = ref_path_table_lookup(str);
- if (objno == HADDR_UNDEF) {
- if (HDstrlen(str) == 0) {
- objno = ref_path_table_lookup("/");
- if (objno == HADDR_UNDEF) {
- if (gen) {
- objno = ref_path_table_gen_fake(str);
- sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
- return 0;
- }
- else {
- return 1;
- }
- }
- }
- else {
- if (gen) {
- objno = ref_path_table_gen_fake(str);
- sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
- return 0;
- }
- else {
- return 1;
- }
- }
- }
-
- sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
-
- return(0);
-}
-
-static const char *quote = "&quot;";
-static const char *amp = "&amp;";
-static const char *lt = "&lt;";
-static const char *gt = "&gt;";
-static const char *apos = "&apos;";
-
-/*-------------------------------------------------------------------------
- * Function: xml_escape_the_name
- *
- * Purpose: Escape XML reserved chars in a name, so HDF5 strings
- * and paths can be correctly read back in XML element.
- *
- * Return: The revised string.
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static char *
-xml_escape_the_name(const char *str)
-{
- size_t extra;
- size_t len;
- size_t i;
- const char *cp;
- char *ncp;
- char *rcp;
-
- if (!str)
- return NULL;
-
- cp = str;
- len = strlen(str);
- extra = 0;
-
- for (i = 0; i < len; i++) {
- if (*cp == '\"') {
- extra += (strlen(quote) - 1);
- }
- else if (*cp == '\'') {
- extra += (strlen(apos) - 1);
- }
- else if (*cp == '<') {
- extra += (strlen(lt) - 1);
- }
- else if (*cp == '>') {
- extra += (strlen(gt) - 1);
- }
- else if (*cp == '&') {
- extra += (strlen(amp) - 1);
- }
-
- cp++;
- }
-
- if (extra == 0)
- return HDstrdup(str);
-
- cp = str;
- rcp = ncp = (char *)HDmalloc(len + extra + 1);
-
- if (!ncp)
- return NULL; /* ?? */
-
- for (i = 0; i < len; i++) {
- if (*cp == '\'') {
- strncpy(ncp, apos, strlen(apos));
- ncp += strlen(apos);
- cp++;
- }
- else if (*cp == '<') {
- strncpy(ncp, lt, strlen(lt));
- ncp += strlen(lt);
- cp++;
- }
- else if (*cp == '>') {
- strncpy(ncp, gt, strlen(gt));
- ncp += strlen(gt);
- cp++;
- }
- else if (*cp == '\"') {
- strncpy(ncp, quote, strlen(quote));
- ncp += strlen(quote);
- cp++;
- }
- else if (*cp == '&') {
- strncpy(ncp, amp, strlen(amp));
- ncp += strlen(amp);
- cp++;
- }
- else {
- *ncp++ = *cp++;
- }
- }
-
- *ncp = '\0';
- return rcp;
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_escape_the_string
- *
- * Purpose: Escape XML reserved chars in a string, so HDF5 strings
- * and paths can be correctly read back in XML CDATA.
- *
- * Return: The revised string.
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static char *
-xml_escape_the_string(const char *str, int slen)
-{
- size_t extra;
- size_t len;
- size_t i;
- const char *cp;
- char *ncp;
- char *rcp;
-
- if (!str)
- return NULL;
-
- cp = str;
-
- if (slen < 0)
- len = strlen(str);
- else
- len = slen;
-
- extra = 0;
-
- for (i = 0; i < len; i++) {
- if (*cp == '\\') {
- extra++;
- }
- else if (*cp == '\"') {
- extra++;
- }
- else if (*cp == '\'') {
- extra += (strlen(apos) - 1);
- }
- else if (*cp == '<') {
- extra += (strlen(lt) - 1);
- }
- else if (*cp == '>') {
- extra += (strlen(gt) - 1);
- }
- else if (*cp == '&') {
- extra += (strlen(amp) - 1);
- }
- cp++;
- }
-
- cp = str;
- rcp = ncp = (char *) calloc((len + extra + 1), sizeof(char));
-
- if (ncp == NULL)
- return NULL; /* ?? */
-
- for (i = 0; i < len; i++) {
- if (*cp == '\\') {
- *ncp++ = '\\';
- *ncp++ = *cp++;
- }
- else if (*cp == '\"') {
- *ncp++ = '\\';
- *ncp++ = *cp++;
- }
- else if (*cp == '\'') {
- strncpy(ncp, apos, strlen(apos));
- ncp += strlen(apos);
- cp++;
- }
- else if (*cp == '<') {
- strncpy(ncp, lt, strlen(lt));
- ncp += strlen(lt);
- cp++;
- }
- else if (*cp == '>') {
- strncpy(ncp, gt, strlen(gt));
- ncp += strlen(gt);
- cp++;
- }
- else if (*cp == '&') {
- strncpy(ncp, amp, strlen(amp));
- ncp += strlen(amp);
- cp++;
- }
- else {
- *ncp++ = *cp++;
- }
- }
-
- *ncp = '\0';
- return rcp;
-}
-
-/**
- ** XML print functions--these replace some functions in the
- ** h5tools.c suite.
- **/
-
-/*-------------------------------------------------------------------------
- * Function: xml_print_datatype
- *
- * Purpose: Print description of a datatype in XML.
- * Note: this is called inside a <DataType> element.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-xml_print_datatype(hid_t type, unsigned in_group)
-{
- char *mname;
- hid_t mtype;
- unsigned nmembers;
- unsigned ndims;
- unsigned i;
- size_t size;
- hsize_t dims[H5DUMP_MAX_RANK];
- H5T_str_t str_pad;
- H5T_cset_t cset;
- hid_t super;
- H5T_order_t ord;
- H5T_sign_t sgn;
- size_t sz;
- size_t spos;
- size_t epos;
- size_t esize;
- size_t mpos;
- size_t msize;
- int nmembs;
- htri_t is_vlstr=FALSE;
-
- if(!in_group && H5Tcommitted(type) > 0) {
- H5O_info_t oinfo;
- obj_t *found_obj; /* Found object */
-
- /* detect a shared datatype, output only once */
- H5Oget_info(type, &oinfo);
- found_obj = search_obj(type_table, oinfo.addr);
-
- if(found_obj) {
- /* This should be defined somewhere else */
- /* These 2 cases are handled the same right now, but
- probably will have something different eventually */
- char * dtxid = (char *)malloc(100);
-
- xml_name_to_XID(found_obj->objname, dtxid, 100, 1);
- if (!found_obj->recorded) {
- /* 'anonymous' NDT. Use it's object num.
- as it's name. */
- HDfprintf(stdout, "<%sNamedDataTypePtr OBJ-XID=\"/%s\"/>\n",
- xmlnsprefix, dtxid);
- }
- else {
- /* point to the NDT by name */
- char *t_objname = xml_escape_the_name(found_obj->objname);
-
- HDfprintf(stdout, "<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
- xmlnsprefix, dtxid, t_objname);
- free(t_objname);
- }
- free(dtxid);
- }
- else {
- HDfprintf(stdout, "<!-- h5dump error: unknown committed type. -->\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
- }
- else {
-
- switch (H5Tget_class(type)) {
- case H5T_INTEGER:
- indentation(indent);
- HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- /* <hdf5:IntegerType ByteOrder="bo" Sign="torf" Size="bytes"/> */
- ord = H5Tget_order(type);
- sgn = H5Tget_sign(type);
- indentation(indent);
- HDfprintf(stdout, "<%sIntegerType ByteOrder=\"",xmlnsprefix);
- switch (ord) {
- case H5T_ORDER_LE:
- HDfprintf(stdout, "LE");
- break;
- case H5T_ORDER_BE:
- HDfprintf(stdout, "BE");
- break;
- case H5T_ORDER_VAX:
- default:
- HDfprintf(stdout, "ERROR_UNKNOWN");
- }
-
- HDfprintf(stdout, "\" Sign=\"");
-
- switch (sgn) {
- case H5T_SGN_NONE:
- HDfprintf(stdout, "false");
- break;
- case H5T_SGN_2:
- HDfprintf(stdout, "true");
- break;
- default:
- HDfprintf(stdout, "ERROR_UNKNOWN");
- }
-
- HDfprintf(stdout, "\" Size=\"");
- sz = H5Tget_size(type);
- HDfprintf(stdout, "%lu", (unsigned long)sz);
- HDfprintf(stdout, "\" />\n");
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
- break;
-
- case H5T_FLOAT:
- /* <hdf5:FloatType ByteOrder="bo" Size="bytes"
- SignBitLocation="bytes"
- ExponentBits="eb" ExponentLocation="el"
- MantissaBits="mb" MantissaLocation="ml" /> */
- ord = H5Tget_order(type);
- indentation(indent);
- HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sFloatType ByteOrder=\"",xmlnsprefix);
-
- switch (ord) {
- case H5T_ORDER_LE:
- HDfprintf(stdout, "LE");
- break;
- case H5T_ORDER_BE:
- HDfprintf(stdout, "BE");
- break;
- case H5T_ORDER_VAX:
- HDfprintf(stdout, "VAX");
- break;
- default:
- HDfprintf(stdout, "ERROR_UNKNOWN");
- }
-
- HDfprintf(stdout, "\" Size=\"");
- sz = H5Tget_size(type);
- HDfprintf(stdout, "%lu", (unsigned long)sz);
- H5Tget_fields(type, &spos, &epos, &esize, &mpos, &msize);
- HDfprintf(stdout, "\" SignBitLocation=\"%lu\" ", (unsigned long)spos);
- HDfprintf(stdout, "ExponentBits=\"%lu\" ExponentLocation=\"%lu\" ", (unsigned long)esize, (unsigned long)epos);
- HDfprintf(stdout, "MantissaBits=\"%lu\" MantissaLocation=\"%lu\" />\n", (unsigned long)msize, (unsigned long)mpos);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
- break;
-
- case H5T_TIME:
- indentation(indent);
- HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sTimeType />\n",xmlnsprefix);
- HDfprintf(stdout, "<!-- H5T_TIME: not yet implemented -->");
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
- break;
-
- case H5T_STRING:
- /* <hdf5:StringType Cset="cs" StrSize="chars" StrPad="pad" /> */
- size = H5Tget_size(type);
- str_pad = H5Tget_strpad(type);
- cset = H5Tget_cset(type);
- is_vlstr = H5Tis_variable_str(type);
-
- indentation(indent);
- HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sStringType Cset=\"",xmlnsprefix);
- if (cset == H5T_CSET_ASCII) {
- HDfprintf(stdout, "H5T_CSET_ASCII\" ");
- }
- else {
- HDfprintf(stdout, "unknown_cset\" ");
- }
- if(is_vlstr)
- HDfprintf(stdout, "StrSize=\"H5T_VARIABLE\" StrPad=\"");
- else
- HDfprintf(stdout, "StrSize=\"%d\" StrPad=\"", (int) size);
- if (str_pad == H5T_STR_NULLTERM) {
- HDfprintf(stdout, "H5T_STR_NULLTERM\"/>\n");
- }
- else if (str_pad == H5T_STR_NULLPAD) {
- HDfprintf(stdout, "H5T_STR_NULLPAD\"/>\n");
- }
- else if (str_pad == H5T_STR_SPACEPAD) {
- HDfprintf(stdout, "H5T_STR_SPACEPAD\"/>\n");
- }
- else {
- HDfprintf(stdout, "H5T_STR_ERROR\"/>\n");
- }
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
- break;
-
- case H5T_BITFIELD:
- /* <hdf5:BitfieldType ByteOrder="bo" Size="bytes"/> */
- ord = H5Tget_order(type);
- indentation(indent);
- HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sBitfieldType ByteOrder=\"",xmlnsprefix);
-
- switch (ord) {
- case H5T_ORDER_LE:
- HDfprintf(stdout, "LE");
- break;
- case H5T_ORDER_BE:
- HDfprintf(stdout, "BE");
- break;
- case H5T_ORDER_VAX:
- default:
- HDfprintf(stdout, "ERROR_UNKNOWN");
- }
-
- size = H5Tget_size(type);
- HDfprintf(stdout, "\" Size=\"%lu\"/>\n", (unsigned long)size);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
- break;
-
- case H5T_OPAQUE:
- /* <hdf5:OpaqueType Tag="tag" Size="bytes" /> */
- indentation(indent);
- HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- mname = H5Tget_tag(type);
- HDfprintf(stdout, "<%sOpaqueType Tag=\"%s\" ",xmlnsprefix, mname);
- free(mname);
- size = H5Tget_size(type);
- HDfprintf(stdout, "Size=\"%lu\"/>\n", (unsigned long)size);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
- break;
-
- case H5T_COMPOUND:
- /* recursively describe the components of a compound datatype */
-
- /* type of a dataset */
- nmembers = H5Tget_nmembers(type);
-
- indentation(indent);
- HDfprintf(stdout, "<%sCompoundType>\n",xmlnsprefix);
-
- /* List each member Field of the type */
- /* <hdf5:Field FieldName="name" > */
- /* <hdf5:DataType > */
- indent += COL;
- for (i = 0; i < nmembers; i++) {
- char *t_fname;
-
- mname = H5Tget_member_name(type, i);
- mtype = H5Tget_member_type(type, i);
- indentation(indent);
- t_fname = xml_escape_the_name(mname);
- HDfprintf(stdout, "<%sField FieldName=\"%s\">\n",xmlnsprefix, t_fname);
-
- free(mname);
- free(t_fname);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
- indent += COL;
- xml_print_datatype(mtype,0);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
- indent -= COL;
-
- indentation(indent);
- HDfprintf(stdout, "</%sField>\n",xmlnsprefix);
- }
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sCompoundType>\n",xmlnsprefix);
- break;
-
- case H5T_REFERENCE:
- indentation(indent);
- HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- /* Only Object references supported at this time */
- HDfprintf(stdout, "<%sReferenceType>\n",xmlnsprefix);
- indentation(indent + COL);
- HDfprintf(stdout, "<%sObjectReferenceType />\n",xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "</%sReferenceType>\n",xmlnsprefix);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
- break;
-
- case H5T_ENUM:
- /* <hdf5:EnumType Nelems="ne" > list Name, values of enum */
- nmembs = H5Tget_nmembers(type);
- indentation(indent);
- HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sEnumType Nelems=\"%d\">\n",xmlnsprefix, nmembs);
- xml_print_enum(type);
- indentation(indent);
- HDfprintf(stdout, "</%sEnumType>\n",xmlnsprefix);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
- break;
-
- case H5T_VLEN:
- indentation(indent);
- HDfprintf(stdout, "<%sVLType>\n",xmlnsprefix);
- super = H5Tget_super(type);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
- indent += COL;
- xml_print_datatype(super,0);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sVLType>\n",xmlnsprefix);
- H5Tclose(super);
-
- break;
-
- case H5T_ARRAY:
- /* Get array base type */
- super = H5Tget_super(type);
-
- /* Print lead-in */
- indentation(indent);
- HDfprintf(stdout, "<%sArrayType Ndims=\"",xmlnsprefix);
- ndims = H5Tget_array_ndims(type);
- HDfprintf(stdout, "%u\">\n", ndims);
-
- /* Get array information */
- H5Tget_array_dims2(type, dims);
-
- /* list of dimensions */
- indent += COL;
- for (i = 0; i < ndims; i++) {
- indentation(indent);
- HDfprintf(stdout, "<%sArrayDimension DimSize=\"%u\"/>\n", xmlnsprefix, (int) dims[i]);
- }
- indent -= COL;
-
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
- indent += COL;
- xml_print_datatype(super,0);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sArrayType>\n",xmlnsprefix);
- /* Close array base type */
- H5Tclose(super);
- break;
-
- default:
- HDfprintf(stdout, "<!-- unknown datatype -->");
- h5tools_setstatus(EXIT_FAILURE);
- break;
- }
- } /* end else */
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_dump_datatype
- *
- * Purpose: Dump description of a datatype in XML.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-xml_dump_datatype(hid_t type)
-{
- indent += COL;
- indentation(indent);
-
- if(H5Tcommitted(type) > 0) {
- H5O_info_t oinfo;
- obj_t *found_obj; /* Found object */
-
- /* Datatype is a shared or named datatype */
- H5Oget_info(type, &oinfo);
- found_obj = search_obj(type_table, oinfo.addr);
-
- if(found_obj) {
- /* Shared datatype, must be entered as an object */
- /* These 2 cases are the same now, but may change */
- char *dtxid = (char *)malloc(100);
-
- xml_name_to_XID(found_obj->objname, dtxid, 100, 1);
- if (!found_obj->recorded) {
- /* anonymous stored datatype:
- following the dumper's current
- practice:
- use it's object ref as its name
- */
- HDfprintf(stdout, "<%sNamedDataTypePtr OBJ-XID=\"%s\"/>\n",
- xmlnsprefix, dtxid);
- }
- else {
- /* pointer to a named datatype already in XML */
- char *t_objname = xml_escape_the_name(found_obj->objname);
-
- HDfprintf(stdout, "<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\" />\n",
- xmlnsprefix, dtxid, t_objname);
- free(t_objname);
- }
- free(dtxid);
- }
- else {
- HDfprintf(stdout, "<!-- h5dump error: unknown committed type. -->\n");
- }
- indent -= COL;
- }
- else {
- HDfprintf(stdout, "<%sDataType>\n", xmlnsprefix);
- indent += COL;
- xml_print_datatype(type, 0);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sDataType>\n", xmlnsprefix);
- indent -= COL;
- }
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_dump_dataspace
- *
- * Purpose: Dump description of a dataspace in XML.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-xml_dump_dataspace(hid_t space)
-{
- hsize_t size[H5DUMP_MAX_RANK];
- hsize_t maxsize[H5DUMP_MAX_RANK];
- int i;
-
- int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
- H5S_class_t space_type = H5Sget_simple_extent_type(space);
-
- indentation(indent + COL);
- HDfprintf(stdout, "<%sDataspace>\n", xmlnsprefix);
- indentation(indent + COL + COL);
-
- switch (space_type) {
- case H5S_SCALAR:
- /* scalar dataspace (just a tag, no XML attrs. defined */
- HDfprintf(stdout, "<%sScalarDataspace />\n",xmlnsprefix);
- break;
-
- case H5S_SIMPLE:
- /* simple dataspace */
- /* <hdf5:SimpleDataspace Ndims="nd"> */
- HDfprintf(stdout, "<%sSimpleDataspace Ndims=\"%d\">\n",xmlnsprefix, ndims);
-
- /* print the <hdf5:Dimension> elements */
- for (i = 0; i < ndims; i++) {
- indentation(indent + COL + COL + COL);
- if (maxsize[i] == H5S_UNLIMITED) {
- HDfprintf(stdout, "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"UNLIMITED\"/>\n",
- xmlnsprefix,size[i]);
- }
- else if (maxsize[i] == (hsize_t) 0) {
- HDfprintf(stdout, "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n",
- xmlnsprefix,size[i], size[i]);
- }
- else {
- HDfprintf(stdout, "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n",
- xmlnsprefix, size[i], maxsize[i]);
- }
- }
- indentation(indent + COL + COL);
- HDfprintf(stdout, "</%sSimpleDataspace>\n", xmlnsprefix );
- break;
-
-#ifdef TMP
- /* Commented out: wait until the schema is updated first */
- case H5S_NULL:
- /* null dataspace (just a tag, no XML attrs. defined */
- HDfprintf(stdout, "<%sNullDataspace />\n",xmlnsprefix);
- break;
-#endif /* TMP */
-
- case H5S_NO_CLASS:
- default:
- HDfprintf(stdout, "<!-- unknown dataspace -->\n");
- }
-
- indentation(indent + COL);
- HDfprintf(stdout, "</%sDataspace>\n", xmlnsprefix);
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_dump_data
- *
- * Purpose: Dump description of data in XML.
- * Note that this calls the h5dump_xxx calls in
- * the h5tools library.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNUSED pindex)
-{
- hid_t space;
- hid_t type;
- hid_t p_type;
- hsize_t size[64];
- hsize_t nelmts = 1;
- int ndims;
- int i;
- int depth;
- int status = -1;
- int stdindent = COL; /* should be 3 */
- h5tool_format_t *outputformat = &xml_dataformat;
- void *buf = NULL;
-
- if (fp_format) {
- outputformat->fmt_double = fp_format;
- outputformat->fmt_float = fp_format;
- }
-
- if (nCols==0) {
- outputformat->line_ncols = 65535;
- outputformat->line_per_line = 1;
- }
- else
- outputformat->line_ncols = nCols;
- indent += COL;
-
- /*
- * the depth will tell us how far we need to indent extra. we use to just
- * use indent but with the merging of the tools lib we have to do
- * something different for the lib funtions... the normal indentation is 6
- * so when we don't need any extra indentation, depth will be 0.
- */
- depth = indent / stdindent + 1;
-
- /* Print all the values. */
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent + COL);
- HDfprintf(stdout, "<%sDataFromFile>\n",xmlnsprefix);
- if (obj_data == DATASET_DATA) {
- type = H5Dget_type(obj_id);
- if (H5Tget_class(type) == H5T_REFERENCE) {
- status = xml_print_refs(obj_id, DATASET_DATA);
- }
- else if (H5Tget_class(type) == H5T_STRING) {
- status = xml_print_strs(obj_id, DATASET_DATA);
- }
- else {
- status = h5tools_dump_dset(stdout, outputformat, obj_id, -1, NULL, depth);
- }
- }
- else {
- /* Attribute data */
- type = H5Aget_type(obj_id);
-
- if (H5Tget_class(type) == H5T_REFERENCE) {
- /* references are done differently than
- the standard output:
- XML dumps a path to the object
- referenced.
- */
- status = xml_print_refs(obj_id, ATTRIBUTE_DATA);
- H5Tclose(type);
- }
- else if (H5Tget_class(type) == H5T_STRING) {
- status = xml_print_strs(obj_id, ATTRIBUTE_DATA);
- }
- else { /* all other data */
- /* VL data special information */
- unsigned int vl_data = 0; /* contains VL datatypes */
-
- p_type = h5tools_get_native_type(type);
-
- /* Check if we have VL data in the dataset's datatype */
- if (h5tools_detect_vlen_str(p_type) == TRUE)
- vl_data = TRUE;
- if (H5Tdetect_class(p_type, H5T_VLEN) == TRUE)
- vl_data = TRUE;
-
- H5Tclose(type);
-
- space = H5Aget_space(obj_id);
-
- ndims = H5Sget_simple_extent_dims(space, size, NULL);
-
- for (i = 0; i < ndims; i++)
- nelmts *= size[i];
-
- buf = malloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type))));
- assert(buf);
-
- if (H5Aread(obj_id, p_type, buf) >= 0)
- status = h5tools_dump_mem(stdout, outputformat, obj_id, p_type, space, buf, depth);
-
- /* Reclaim any VL memory, if necessary */
- if (vl_data)
- H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf);
-
- free(buf);
- H5Tclose(p_type);
- H5Sclose(space);
- H5Tclose(type);
- }
- }
-
- if (status == FAIL) {
- indentation(indent + COL);
- HDfprintf(stdout, "Unable to print data.\n");
- status = 1;
- }
-
- indentation(indent + COL);
- HDfprintf(stdout, "</%sDataFromFile>\n",xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- indent -= COL;
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_dump_attr
- *
- * Purpose: Dump a description of an HDF5 attribute in XML.
- *
- * Return: herr_t
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static herr_t
-xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t UNUSED *info,
- void UNUSED * op_data)
-{
- hid_t attr_id;
- hid_t type;
- hid_t space;
- H5S_class_t space_type;
-
- char *t_aname = xml_escape_the_name(attr_name);
-
- indentation(indent);
- HDfprintf(stdout, "<%sAttribute Name=\"%s\">\n", xmlnsprefix, t_aname);
- free(t_aname);
-
- if ((attr_id = H5Aopen(attr, attr_name, H5P_DEFAULT)) >= 0) {
- type = H5Aget_type(attr_id);
- space = H5Aget_space(attr_id);
- space_type = H5Sget_simple_extent_type(space);
-
- dump_function_table->dump_dataspace_function(space);
- dump_function_table->dump_datatype_function(type);
-
- if (display_attr_data && space_type != H5S_NULL) {
- switch (H5Tget_class(type)) {
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_STRING:
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- case H5T_ENUM:
- case H5T_ARRAY:
- dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
- break;
-
- case H5T_TIME:
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "<!-- Time data not yet implemented. -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "<hdf5:Data>\n");
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- indent -= COL;
- break;
-
- case H5T_COMPOUND:
- indentation(indent);
- HDfprintf(stdout, "<!-- Note: format of compound data not specified -->\n");
- dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
- break;
-
- case H5T_REFERENCE:
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent);
- if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
- HDfprintf(stdout, "<!-- Note: Region references not supported -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
- }
- else {
- HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
- xml_print_refs(attr_id, ATTRIBUTE_DATA);
- indentation(indent);
- HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
- }
- indentation(indent);
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- break;
-
- case H5T_VLEN:
- HDfprintf(stdout, "<!-- Note: format of VL data not specified -->\n");
- dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
- break;
- default:
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "<!-- Unknown datatype: %d -->\n", H5Tget_class(type));
- indentation(indent);
- HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- break;
- }
- }
- else {
- /* The case of an attribute never yet written ??
- * Or dataspace is H5S_NULL. */
- indentation(indent + COL);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent + COL + COL);
- HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
- indentation(indent + COL);
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- }
-
- H5Tclose(type);
- H5Sclose(space);
- H5Aclose(attr_id);
- indentation(indent);
- HDfprintf(stdout, "</%sAttribute>\n", xmlnsprefix);
- return SUCCEED;
-
- }
- else {
- /* ?? failed */
- indentation(indent + COL);
- HDfprintf(stdout, "<!-- h5dump error: unable to open attribute. -->\n");
- indentation(indent);
- HDfprintf(stdout, "</%sAttribute>\n", xmlnsprefix);
- h5tools_setstatus(EXIT_FAILURE);
- return FAIL;
- }
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_dump_named_datatype
- *
- * Purpose: Dump a description of an HDF5 NDT in XML.
- *
- * Return: herr_t
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-xml_dump_named_datatype(hid_t type, const char *name)
-{
- char *tmp;
- char *dtxid;
- char *parentxid;
- char *t_tmp;
- char *t_prefix;
- char *t_name;
-
- tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
- HDstrcpy(tmp, prefix);
- HDstrcat(tmp, "/");
- HDstrcat(tmp, name);
-
- indentation(indent);
- dtxid = (char *)HDmalloc(100);
- parentxid = (char *)HDmalloc(100);
- t_tmp = xml_escape_the_name(tmp);
- t_prefix = xml_escape_the_name(prefix);
- t_name = xml_escape_the_name(name);
-
- xml_name_to_XID(tmp, dtxid, 100, 1);
- xml_name_to_XID(prefix, parentxid, 100, 1);
- if(HDstrncmp(name, "#", 1) == 0) {
- /* Special: this is an 'anonymous' NDT, deleted but
- still in use.
- We follow the dumper's undocumented practice, and
- use its object id as its name.
- Exactly the same as normal, but a separate case
- in the event we want to do something else in
- the future.
- */
- HDfprintf(stdout, "<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\">\n",
- xmlnsprefix,
- name, dtxid,
- parentxid, HDstrcmp(prefix,"") ? t_prefix : "/");
- }
- else {
- H5O_info_t oinfo; /* Object info */
-
- HDfprintf(stdout, "<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
- "H5Path=\"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n",
- xmlnsprefix,
- t_name, dtxid,
- t_tmp, parentxid, (HDstrcmp(prefix, "") ? t_prefix : "/"));
-
- /* Check uniqueness of named datatype */
- H5Oget_info(type, &oinfo);
- if(oinfo.rc > 1) {
- obj_t *found_obj; /* Found object */
-
- /* Group with more than one link to it... */
- found_obj = search_obj(type_table, oinfo.addr);
-
- if (found_obj == NULL) {
- indentation(indent);
- error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
- h5tools_setstatus(EXIT_FAILURE);
- goto done;
- }
- else if(found_obj->displayed) {
- /* We have already printed this named datatype, print it as a
- * NamedDatatypePtr
- */
- char pointerxid[100];
- char *t_objname = xml_escape_the_name(found_obj->objname);
-
- indentation(indent + COL);
- xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
- HDfprintf(stdout, "<%sNamedDatatypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n", xmlnsprefix, pointerxid, t_objname);
- indentation(indent);
- HDfprintf(stdout, "</%sNamedDataType>\n", xmlnsprefix);
- HDfree(t_objname);
- goto done;
- }
- else
- found_obj->displayed = TRUE;
- }
- }
-
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
-
- indent += COL;
- xml_print_datatype(type,1);
-
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
-
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sNamedDataType>\n",xmlnsprefix);
-
-done:
- HDfree(dtxid);
- HDfree(parentxid);
- HDfree(t_tmp);
- HDfree(t_prefix);
- HDfree(t_name);
- HDfree(tmp);
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_dump_group
- *
- * Purpose: Dump a description of an HDF5 Group (and its members) in XML.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- * Pedro Vicente, October 9, 2007
- * added parameters to H5A(L)iterate to allow for other iteration orders
- *
- *-------------------------------------------------------------------------
- */
-static void
-xml_dump_group(hid_t gid, const char *name)
-{
- H5O_info_t oinfo;
- hid_t gcpl_id;
- hid_t dset, type;
- unsigned crt_order_flags;
- unsigned attr_crt_order_flags;
- int isRoot = 0;
- char type_name[1024];
- char *t_objname = NULL;
- char *par_name = NULL;
- char *cp = NULL;
- char *tmp = NULL;
- char *par = NULL;
-
-
- if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
- error_msg("error in getting group creation property list ID\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- /* query the group creation properties for attributes */
- if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0) {
- error_msg("error in getting group creation properties\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- /* query the group creation properties */
- if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0) {
- error_msg("error in getting group creation properties\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- if(H5Pclose(gcpl_id) < 0) {
- error_msg("error in closing group creation property list ID\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- if(HDstrcmp(name, "/") == 0) {
- isRoot = 1;
- tmp = HDstrdup("/");
- }
- else {
- tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
- HDstrcpy(tmp, prefix);
- par = HDstrdup(tmp);
- cp = HDstrrchr(par, '/');
- if(cp) {
- if((cp == par) && HDstrlen(par) > 1)
- *(cp + 1) = '\0';
- else
- *cp = '\0';
- }
- }
-
- indentation(indent);
- indent += COL;
-
- H5Oget_info(gid, &oinfo);
-
- if(oinfo.rc > 1) {
- obj_t *found_obj; /* Found object */
-
- /* Group with more than one link to it... */
- found_obj = search_obj(group_table, oinfo.addr);
-
- if (found_obj == NULL) {
- indentation(indent);
- error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
- h5tools_setstatus(EXIT_FAILURE);
- }
- else {
- char *t_name = xml_escape_the_name(name);
- char *grpxid = (char *)malloc(100);
- char *parentxid = (char *)malloc(100);
-
- if(found_obj->displayed) {
- char *ptrstr = (char *)malloc(100);
-
- /* already seen: enter a groupptr */
- if(isRoot) {
- /* probably can't happen! */
- xml_name_to_XID("/", grpxid, 100, 1);
- HDfprintf(stdout, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n",
- xmlnsprefix, grpxid, "/");
- }
- else {
- t_objname = xml_escape_the_name(found_obj->objname);
- par_name = xml_escape_the_name(par);
- xml_name_to_XID(tmp, grpxid, 100, 1);
- xml_name_to_XID(par, parentxid, 100, 1);
- HDfprintf(stdout, "<%sGroup Name=\"%s\" OBJ-XID=\"%s-%d\" H5Path=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\">\n",
- xmlnsprefix,t_name, grpxid, get_next_xid(),
- t_objname, parentxid, par_name);
- free(t_objname);
- free(par_name);
-
- indentation(indent + COL);
- t_objname = xml_escape_the_name(found_obj->objname);/* point to the NDT by name */
- par_name = xml_escape_the_name(par);
- xml_name_to_XID(found_obj->objname, ptrstr, 100, 1);
- xml_name_to_XID(par, parentxid, 100, 1);
- HDfprintf(stdout, "<%sGroupPtr OBJ-XID=\"%s\" H5Path=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- ptrstr, t_objname, parentxid, par_name);
- free(t_objname);
- free(par_name);
- }
- free(ptrstr);
- }
- else {
-
- /* first time this group has been seen -- describe it */
- if(isRoot) {
- xml_name_to_XID("/", grpxid, 100, 1);
- HDfprintf(stdout, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n",
- xmlnsprefix, grpxid, "/");
- }
- else {
- char *t_tmp = xml_escape_the_name(tmp);
-
- par_name = xml_escape_the_name(par);
- xml_name_to_XID(tmp, grpxid, 100, 1);
- xml_name_to_XID(par, parentxid, 100, 1);
- HDfprintf(stdout, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" >\n",
- xmlnsprefix,t_name, grpxid, t_tmp, parentxid, par_name);
- free(t_tmp);
- free(par_name);
- }
- found_obj->displayed = TRUE;
-
- /* 1. do all the attributes of the group */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
- if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end if */
- else {
- if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end else */
-
- if(isRoot && unamedtype) {
- unsigned u;
-
- /* Very special case: dump unamed type in root group */
- for(u = 0; u < type_table->nobjs; u++) {
- if(!type_table->objs[u].recorded) {
- dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
- type = H5Dget_type(dset);
- sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
- dump_function_table->dump_named_datatype_function(type, type_name);
- H5Tclose(type);
- H5Dclose(dset);
- }
- }
- }
-
- /* iterate through all the links */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
- H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
- else
- H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
-
-
- }
- free(t_name);
- free(grpxid);
- free(parentxid);
- }
- }
- else {
-
- /* only link -- must be first time! */
- char *t_name = xml_escape_the_name(name);
- char *grpxid = (char *)malloc(100);
- char *parentxid = (char *)malloc(100);
-
- if(isRoot) {
- xml_name_to_XID("/", grpxid, 100, 1);
- HDfprintf(stdout, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n", xmlnsprefix, grpxid, "/");
- }
- else {
- char *t_tmp = xml_escape_the_name(tmp);
-
- par_name = xml_escape_the_name(par);
- xml_name_to_XID(tmp, grpxid, 100, 1);
- xml_name_to_XID(par, parentxid, 100, 1);
- HDfprintf(stdout, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" >\n",
- xmlnsprefix, t_name, grpxid, t_tmp, parentxid, par_name);
- free(t_tmp);
- free(par_name);
- }
- free(t_name);
- free(grpxid);
- free(parentxid);
-
- /* 1. do all the attributes of the group */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
- if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end if */
- else {
- if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end else */
-
-
- if(isRoot && unamedtype) {
- unsigned u;
-
- /* Very special case: dump unamed type in root group */
- for(u = 0; u < type_table->nobjs; u++) {
- if(!type_table->objs[u].recorded) {
- dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
- type = H5Dget_type(dset);
- sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
- dump_function_table->dump_named_datatype_function(type, type_name);
- H5Tclose(type);
- H5Dclose(dset);
- }
- }
- }
-
- /* iterate through all the links */
-
- if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
- H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
- else
- H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
- }
-
- indent -= COL;
- indentation(indent);
- if(isRoot)
- HDfprintf(stdout, "</%sRootGroup>\n", xmlnsprefix);
- else
- HDfprintf(stdout, "</%sGroup>\n", xmlnsprefix);
- if(par)
- free(par);
- if(tmp)
- free(tmp);
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_print_refs
- *
- * Purpose: Print a path to the objects referenced by HDF5 Referneces.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static int
-xml_print_refs(hid_t did, int source)
-{
- herr_t e;
- hid_t type;
- hid_t space;
- hssize_t ssiz;
- hsize_t i;
- size_t tsiz;
- hobj_ref_t *refbuf = NULL;
- char *buf = NULL;
-
- if (source == DATASET_DATA) {
- type = H5Dget_type(did);
- }
- else if (source == ATTRIBUTE_DATA) {
- type = H5Aget_type(did);
- }
- else {
- /* return an error */
- return FAIL;
- }
- if (H5Tget_class(type) != H5T_REFERENCE) {
- /* return an error */
- goto error;
- }
- if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
- /* region ref not supported yet... */
- /* return an error */
- goto error;
- }
- if (source == DATASET_DATA) {
- space = H5Dget_space(did);
- if ((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
- goto error;
- if ((tsiz = H5Tget_size(type)) == 0)
- goto error;
-
- buf = (char *) calloc((size_t)(ssiz * tsiz), sizeof(char));
- if (buf == NULL)
- goto error;
- e = H5Dread(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
- /* need to check result here */
- if (e < 0) {
- goto error;
- }
- }
- else if (source == ATTRIBUTE_DATA) {
- space = H5Aget_space(did);
- if ((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
- goto error;
- if ((tsiz = H5Tget_size(type)) == 0)
- goto error;
-
- buf = (char *) calloc((size_t)(ssiz * tsiz), sizeof(char));
- if (buf == NULL) {
- goto error;
- }
- e = H5Aread(did, H5T_STD_REF_OBJ, buf);
- /* need to check the result here */
- if (e < 0) {
- goto error;
- }
- }
-
- refbuf = (hobj_ref_t *) buf;
-
- for (i = 0; i < ssiz; i++) {
- const char *path = lookup_ref_path(*refbuf);
- indentation(indent + COL);
-
- if (!path) {
- HDfprintf(stdout, "\"%s\"\n", "NULL");
- }
- else {
- char *t_path = xml_escape_the_string(path, -1);
-
- HDfprintf(stdout, "\"%s\"\n", t_path);
- free(t_path);
- }
-
- refbuf++;
- }
-
- free(buf);
- H5Tclose(type);
- H5Sclose(space);
- return SUCCEED;
-
-error:
- if(buf)
- free(buf);
-
- H5E_BEGIN_TRY {
- H5Tclose(type);
- H5Sclose(space);
- } H5E_END_TRY;
- return FAIL;
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_print_strs
- *
- * Purpose: Print strings.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static int
-xml_print_strs(hid_t did, int source)
-{
- herr_t e;
- hid_t type;
- hid_t space;
- hssize_t ssiz;
- htri_t is_vlstr = FALSE;
- size_t tsiz;
- size_t i;
- size_t str_size = 0;
- char *bp = NULL;
- char *onestring = NULL;
- void *buf = NULL;
-
- if (source == DATASET_DATA) {
- type = H5Dget_type(did);
- }
- else if (source == ATTRIBUTE_DATA) {
- type = H5Aget_type(did);
- }
- else {
- /* return an error */
- return FAIL;
- }
- if (H5Tget_class(type) != H5T_STRING) {
- /* return an error */
- goto error;
- }
- /* Check if we have VL data in the dataset's datatype */
- is_vlstr = H5Tis_variable_str(type);
-
- if (source == DATASET_DATA) {
- space = H5Dget_space(did);
- if((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
- goto error;
- if((tsiz = H5Tget_size(type)) == 0)
- goto error;
-
- buf = malloc((size_t)(ssiz * tsiz));
- if (buf == NULL)
- goto error;
-
- e = H5Dread(did, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
- if (e < 0) {
- goto error;
- }
- }
- else if (source == ATTRIBUTE_DATA) {
- space = H5Aget_space(did);
- if((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
- goto error;
- if((tsiz = H5Tget_size(type)) == 0)
- goto error;
-
- buf = malloc((size_t)(ssiz * tsiz));
- if (buf == NULL)
- goto error;
-
- e = H5Aread(did, type, buf);
- if (e < 0) {
- goto error;
- }
- }
-
- bp = (char*) buf;
- if (!is_vlstr)
- onestring = (char *) calloc(tsiz, sizeof(char));
-
- for (i = 0; i < ssiz; i++) {
- if (is_vlstr) {
- onestring = *(char **) bp;
- if (onestring)
- str_size = (size_t) HDstrlen(onestring);
- }
- else {
- HDstrncpy(onestring, bp, tsiz);
- str_size = tsiz;
- }
- indentation(indent + COL);
-
- if (!onestring) {
- HDfprintf(stdout, "NULL\n");
- }
- else {
- char *t_onestring = xml_escape_the_string(onestring, (int) str_size);
- if (t_onestring) {
- HDfprintf(stdout, "\"%s\"\n", t_onestring);
- free(t_onestring);
- }
- }
-
- bp += tsiz;
- }
-
- /* Reclaim any VL memory, if necessary */
- if (!is_vlstr)
- if (onestring)
- free(onestring);
- if (buf) {
- if (is_vlstr)
- H5Dvlen_reclaim(type, space, H5P_DEFAULT, buf);
- free(buf);
- }
- H5Tclose(type);
- H5Sclose(space);
- return SUCCEED;
-
-error:
- if(buf)
- free(buf);
-
- H5E_BEGIN_TRY {
- H5Tclose(type);
- H5Sclose(space);
- } H5E_END_TRY;
- return FAIL;
-}
-
-/*-------------------------------------------------------------------------
- * Function: check_filters
- *
- * Purpose: private function to check for the filters and
- * put tags in the XML.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-check_filters(hid_t dcpl)
-{
- int nfilt;
- int i;
- H5Z_filter_t filter;
- char namebuf[120];
- size_t cd_nelmts = 20;
- unsigned int cd_values[20];
- unsigned int flags;
-
- nfilt = H5Pget_nfilters(dcpl);
- if (nfilt <= 0)
- return;
- for (i = 0; i < nfilt; i++) {
- filter = H5Pget_filter2(dcpl, (unsigned) i, &flags, (size_t *) &cd_nelmts, cd_values, 120, namebuf, NULL);
- if (filter == H5Z_FILTER_DEFLATE) {
- indentation(indent + COL);
- HDfprintf(stdout, "<%sDeflate Level=\"", xmlnsprefix);
- if (cd_nelmts < 1) {
- /* not sure what this means? */
- HDfprintf(stdout, "6");
- }
- else {
- HDfprintf(stdout, "%d", cd_values[0]);
- }
- HDfprintf(stdout, "\"/>\n");
- }
- else if (filter == H5Z_FILTER_FLETCHER32) {
- indentation(indent + COL);
- HDfprintf(stdout, "<%sFletcher32 />", xmlnsprefix);
- }
- else if (filter == H5Z_FILTER_SHUFFLE) {
- indentation(indent + COL);
- HDfprintf(stdout, "<%sShuffle />", xmlnsprefix);
- }
- else if (filter == H5Z_FILTER_SZIP) {
-
- indentation(indent + COL);
- HDfprintf(stdout, "<%sSZIP ", xmlnsprefix);
- if (cd_nelmts < 2) {
- /* no pixels ? */
- HDfprintf(stdout, "Pixels_per_block=\"-1\" ");
- }
- else {
- HDfprintf(stdout, "Pixels_per_block=\"%d\" ", cd_values[1]);
- }
- /* analyse the options mask */
- if (cd_values[0] & H5_SZIP_CHIP_OPTION_MASK) {
- HDfprintf(stdout, "Mode =\"Hardware\" ");
- }
- else if (cd_values[0] & H5_SZIP_ALLOW_K13_OPTION_MASK) {
- HDfprintf(stdout, "Mode =\"K13\" ");
- }
- HDfprintf(stdout, "Coding=\"");
- if (cd_values[0] & H5_SZIP_EC_OPTION_MASK) {
- HDfprintf(stdout, "Entropy");
- }
- else if (cd_values[0] & H5_SZIP_NN_OPTION_MASK) {
- HDfprintf(stdout, "NN");
- }
- HDfprintf(stdout, "\" ");
-
- HDfprintf(stdout, "ByteOrder=\"");
- if (cd_values[0] & H5_SZIP_LSB_OPTION_MASK) {
- HDfprintf(stdout, "LSB");
- }
- else if (cd_values[0] & H5_SZIP_MSB_OPTION_MASK) {
- HDfprintf(stdout, "MSB");
- }
- HDfprintf(stdout, "\" ");
-
- if (cd_values[0] & H5_SZIP_RAW_OPTION_MASK) {
- HDfprintf(stdout, "Header=\"Raw\"");
- }
- HDfprintf(stdout, "/>\n");
- }
- else {
- /* unknown option */
- }
- }
-}
-
-static void
-xml_dump_fill_value(hid_t dcpl, hid_t type)
-{
- size_t sz;
- size_t i;
- hsize_t space;
- void *buf;
- char *name;
-
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indent += COL;
-
- space = H5Tget_size(type);
- buf = malloc((size_t) space);
-
- H5Pget_fill_value(dcpl, type, buf);
-
- if (H5Tget_class(type) == H5T_REFERENCE) {
- const char * path = lookup_ref_path(*(hobj_ref_t *) buf);
-
- indentation(indent);
- HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
- if (!path) {
- HDfprintf(stdout, "\"%s\"\n", "NULL");
- }
- else {
- char *t_path = xml_escape_the_string(path, -1);
-
- HDfprintf(stdout, "\"%s\"\n", t_path);
- free(t_path);
- }
- indentation(indent);
- HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
- }
- else if (H5Tget_class(type) == H5T_STRING) {
- /* ????? */
- indentation(indent);
- HDfprintf(stdout, "<!-- String fill values not yet implemented. -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
- }
- else {
- /* all other data */
- switch (H5Tget_class(type)) {
- case H5T_INTEGER:
- indentation(indent);
- HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "\"%d\"\n", *(int *) buf);
- indentation(indent);
- HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
- break;
- case H5T_FLOAT:
- indentation(indent);
- HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "\"%f\"\n", *(float *) buf);
- indentation(indent);
- HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
- break;
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- indentation(indent);
- HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
- sz = H5Tget_size(type);
- indentation(indent);
- HDfprintf(stdout, "\"");
- for (i = 0; i < sz; i++) {
- HDfprintf(stdout, "%x ", *(unsigned int *) buf);
- buf = (char *) buf + sizeof(unsigned int);
- }
- HDfprintf(stdout, "\"\n");
- indentation(indent);
- HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
- break;
- case H5T_ENUM:
- indentation(indent);
- HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
- name = H5Tget_member_name(type, *(unsigned *) buf);
- indentation(indent);
- HDfprintf(stdout, "\"%s\"\n", name);
- indentation(indent);
- HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
- break;
- case H5T_ARRAY:
- indentation(indent);
- HDfprintf(stdout, "<!-- Array fill values not yet implemented. -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
- break;
- case H5T_TIME:
- indentation(indent);
- HDfprintf(stdout, "<!-- Time fill not yet implemented. -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
- break;
- case H5T_COMPOUND:
- indentation(indent);
- HDfprintf(stdout, "<!-- Compound fill not yet implemented. -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
- break;
- case H5T_VLEN:
- indentation(indent);
- HDfprintf(stdout, "<!-- VL fill not yet implemented. -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
- break;
- default:
- indentation(indent);
- HDfprintf(stdout, "<!-- Unknown fill datatype: %d -->\n", H5Tget_class(type));
- indentation(indent);
- HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
- break;
- }
- }
- free(buf);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- indent -= COL;
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_dump_dataset
- *
- * Purpose: Dump a description of an HDF5 dataset in XML.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- * Pedro Vicente, October 9, 2007
- * added parameters to H5Aiterate2 to allow for other iteration orders
- *
- *-------------------------------------------------------------------------
- */
-static void
-xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
-{
- hid_t type;
- hid_t space;
- hid_t dcpl;
- H5D_fill_value_t fvstatus;
- int maxdims;
- hsize_t *chsize;
- int ndims;
- int i;
- H5D_alloc_time_t at;
- H5D_fill_time_t ft;
- hsize_t tempi;
- char *tmp;
- char *t_name;
- char *t_tmp;
- char *t_prefix;
- unsigned attr_crt_order_flags;
-
- char *rstr = (char*) HDmalloc(100);
- char *pstr = (char*) HDmalloc(100);
-
- tmp = (char*) HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
- HDstrcpy(tmp, prefix);
- HDstrcat(tmp, "/");
- HDstrcat(tmp, name);
- indentation(indent);
-
- t_name = xml_escape_the_name(name);
- t_tmp = xml_escape_the_name(tmp);
- t_prefix = xml_escape_the_name(prefix);
-
- xml_name_to_XID(tmp, rstr, 100, 1);
- xml_name_to_XID(prefix, pstr, 100, 1);
- HDfprintf(stdout, "<%sDataset Name=\"%s\" OBJ-XID=\"%s\" H5Path= \"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n",
- xmlnsprefix, t_name, rstr, t_tmp, pstr,
- strcmp(prefix, "") ? t_prefix : "/");
-
- HDfree(t_name);
- HDfree(t_tmp);
- HDfree(t_prefix);
- HDfree(rstr);
- HDfree(pstr);
- HDfree(tmp);
-
- dcpl = H5Dget_create_plist(did);
- type = H5Dget_type(did);
- space = H5Dget_space(did);
-
- /* query the creation properties for attributes */
- H5Pget_attr_creation_order(dcpl, &attr_crt_order_flags);
-
- /* Print information about storage layout */
- if (H5D_CHUNKED == H5Pget_layout(dcpl)) {
- maxdims = H5Sget_simple_extent_ndims(space);
- chsize = (hsize_t *) malloc(maxdims * sizeof(hsize_t));
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sStorageLayout>\n", xmlnsprefix);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sChunkedLayout ", xmlnsprefix);
- ndims = H5Pget_chunk(dcpl, maxdims, chsize);
- HDfprintf(stdout, "Ndims=\"%d\">\n", ndims);
-
- indent += COL;
-
- for (i = 0; i < ndims; i++) {
- indentation(indent);
- HDfprintf(stdout, "<%sChunkDimension DimSize=\"%Hu\" />\n", xmlnsprefix, chsize[i]);
- }
-
- indentation(indent);
- HDfprintf(stdout, "<%sRequiredFilter>\n", xmlnsprefix);
- indent += COL;
- check_filters(dcpl);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sRequiredFilter>\n", xmlnsprefix);
-
- indent -= COL;
-
- indentation(indent);
- HDfprintf(stdout, "</%sChunkedLayout>\n", xmlnsprefix);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sStorageLayout>\n", xmlnsprefix);
- indent -= COL;
- free(chsize);
- }
- else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl)) {
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sStorageLayout>\n", xmlnsprefix);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sContiguousLayout/>\n", xmlnsprefix);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sStorageLayout>\n", xmlnsprefix);
- indent -= COL;
- indentation(indent);
- }
- else if (H5D_COMPACT == H5Pget_layout(dcpl)) {
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sStorageLayout>\n", xmlnsprefix);
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sCompactLayout/>\n", xmlnsprefix);
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sStorageLayout>\n", xmlnsprefix);
- indent -= COL;
- indentation(indent);
- }
- /* and check for external.... ?? */
-
- /* fill value */
-
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sFillValueInfo ", xmlnsprefix);
- H5Pget_fill_time(dcpl, &ft);
- HDfprintf(stdout, "FillTime=\"");
- switch (ft) {
- case H5D_FILL_TIME_ALLOC:
- HDfprintf(stdout, "FillOnAlloc");
- break;
- case H5D_FILL_TIME_NEVER:
- HDfprintf(stdout, "FillNever");
- break;
- case H5D_FILL_TIME_IFSET:
- HDfprintf(stdout, "FillIfSet");
- break;
- default:
- HDfprintf(stdout, "?");
- break;
- }
- HDfprintf(stdout, "\" ");
- H5Pget_alloc_time(dcpl, &at);
- HDfprintf(stdout, "AllocationTime=\"");
- switch (at) {
- case H5D_ALLOC_TIME_EARLY:
- HDfprintf(stdout, "Early");
- break;
- case H5D_ALLOC_TIME_INCR:
- HDfprintf(stdout, "Incremental");
- break;
- case H5D_ALLOC_TIME_LATE:
- HDfprintf(stdout, "Late");
- break;
- case H5D_ALLOC_TIME_DEFAULT:
- default:
- HDfprintf(stdout, "?");
- break;
- }
- HDfprintf(stdout, "\"");
- HDfprintf(stdout, ">\n");
-
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sFillValue>\n", xmlnsprefix);
- indent += COL;
- H5Pfill_value_defined(dcpl, &fvstatus);
- if (fvstatus == H5D_FILL_VALUE_UNDEFINED ||
- (fvstatus == H5D_FILL_VALUE_DEFAULT && ft == H5D_FILL_TIME_IFSET)) {
- indentation(indent + COL);
- HDfprintf(stdout, "<%sNoFill/>\n", xmlnsprefix);
- }
- else {
- xml_dump_fill_value(dcpl, type);
- }
-
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sFillValue>\n", xmlnsprefix);
-
- indent -= COL;
- indentation(indent);
- HDfprintf(stdout, "</%sFillValueInfo>\n", xmlnsprefix);
- indent -= COL;
-
- dump_function_table->dump_dataspace_function(space);
- dump_function_table->dump_datatype_function(type);
-
- indent += COL;
-
- if ((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
- if (H5Aiterate2(did, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end if */
- else {
- if (H5Aiterate2(did, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
- error_msg("error getting attribute information\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end if */
- } /* end else */
-
- indent -= COL;
- tempi = H5Dget_storage_size(did);
-
- if (display_data && (tempi > 0)) {
- switch (H5Tget_class(type)) {
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_STRING:
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- case H5T_ENUM:
- case H5T_ARRAY:
- dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
- break;
-
- case H5T_TIME:
- indent += COL;
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "<!-- Time data not yet implemented. -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indent -= COL;
- break;
-
- case H5T_COMPOUND:
- indentation(indent);
- HDfprintf(stdout, "<!-- Note: format of compound data not specified -->\n");
- dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
- break;
-
- case H5T_REFERENCE:
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent);
- if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
- HDfprintf(stdout, "<!-- Note: Region references not supported -->\n");
- indentation(indent);
- HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
- }
- else {
- HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
- xml_print_refs(did, DATASET_DATA);
- indentation(indent);
- HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
- }
- indentation(indent);
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- break;
-
- case H5T_VLEN:
- HDfprintf(stdout, "<!-- Note: format of VL data not specified -->\n");
- dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
- break;
- default:
- indentation(indent);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "<!-- Unknown datatype: %d -->\n", H5Tget_class(type));
- indentation(indent);
- HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- break;
- }
- }
- else {
- /* no data written */
- indentation(indent + COL);
- HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
- indentation(indent + COL + COL);
- HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
- indentation(indent + COL);
- HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
- }
-
- H5Tclose(type);
- H5Sclose(space);
- H5Pclose(dcpl);
- indentation(indent);
- HDfprintf(stdout, "</%sDataset>\n", xmlnsprefix);
-}
-
-/*-------------------------------------------------------------------------
- * Function: xml_print_enum
- *
- * Purpose: Print the values of an HDF5 ENUM in XML.
- * Very similar to regular DDL output.
- *
- * Return: void
- *
- * Programmer: REMcG
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-xml_print_enum(hid_t type)
-{
- char **name = NULL; /*member names */
- unsigned char *value = NULL; /*value array */
- unsigned nmembs; /*number of members */
- hid_t super; /*enum base integer type */
- hid_t native = -1; /*native integer datatype */
- size_t dst_size; /*destination value type size */
- unsigned i; /*miscellaneous counters */
- size_t j;
-
- nmembs = (unsigned)H5Tget_nmembers(type);
- super = H5Tget_super(type);
-
- indentation(indent);
- HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
- xml_print_datatype(super,0);
- indentation(indent);
- HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
-
- /*
- * Determine what datatype to use for the native values. To simplify
- * things we entertain three possibilities:
- * 1. long long -- the largest native signed integer
- * 2. unsigned long long -- the largest native unsigned integer
- * 3. raw format
- */
- if (H5Tget_size(type) <= sizeof(long long)) {
- dst_size = sizeof(long long);
-
- if (H5T_SGN_NONE == H5Tget_sign(type)) {
- native = H5T_NATIVE_ULLONG;
- }
- else {
- native = H5T_NATIVE_LLONG;
- }
- }
- else {
- dst_size = H5Tget_size(type);
- }
-
- /* Get the names and raw values of all members */
- name = (char **)calloc(nmembs, sizeof(char *));
- value = (unsigned char *)calloc(nmembs, MAX(H5Tget_size(type), dst_size));
-
- for (i = 0; i < nmembs; i++) {
- name[i] = H5Tget_member_name(type, i);
- H5Tget_member_value(type, i, value + i * H5Tget_size(type));
- }
-
- /* Convert values to native datatype */
- if (native > 0)
- H5Tconvert(super, native, nmembs, value, NULL, H5P_DEFAULT);
-
- /* Sort members by increasing value */
- /*not implemented yet */
-
- /* Print members */
- indent += COL;
- for (i = 0; i < nmembs; i++) {
- char *t_name = xml_escape_the_name(name[i]);
-
- indentation(indent);
- HDfprintf(stdout, "<%sEnumElement>\n",xmlnsprefix);
- indentation(indent + COL);
- HDfprintf(stdout, "%s\n", t_name);
- free(t_name);
- indentation(indent);
- HDfprintf(stdout, "</%sEnumElement>\n",xmlnsprefix);
- indentation(indent);
- HDfprintf(stdout, "<%sEnumValue>\n",xmlnsprefix);
- indentation(indent + COL);
- if (native < 0) {
- HDfprintf(stdout, "0x");
-
- for (j = 0; j < dst_size; j++)
- HDfprintf(stdout, "%02x", value[i * dst_size + j]);
- }
- else if (H5T_SGN_NONE == H5Tget_sign(native)) {
- HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "u", *((unsigned long long *)
- ((void *) (value + i * dst_size))));
- }
- else {
- HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "d",
- *((long long *) ((void *) (value + i * dst_size))));
- }
- HDfprintf(stdout, "\n");
- indentation(indent);
- HDfprintf(stdout, "</%sEnumValue>\n",xmlnsprefix);
-
- }
- indent -= COL;
-
- /* Release resources */
- for (i = 0; i < nmembs; i++)
- free(name[i]);
-
- free(name);
- free(value);
- H5Tclose(super);
-}
-
-
-/*-------------------------------------------------------------------------
* Function: h5_fileaccess
*
* Purpose: Returns a file access template which is the default template
@@ -7326,7 +1576,7 @@ xml_print_enum(hid_t type)
*
*-------------------------------------------------------------------------
*/
-static hid_t
+hid_t
h5_fileaccess(void)
{
static const char *multi_letters = "msbrglo";
@@ -7452,7 +1702,7 @@ init_prefix(char **prfx, size_t prfx_len)
*
*-------------------------------------------------------------------------
*/
-static void
+void
add_prefix(char **prfx, size_t *prfx_len, const char *name)
{
size_t new_len = HDstrlen(*prfx) + HDstrlen(name) + 2;
@@ -7467,103 +1717,3 @@ add_prefix(char **prfx, size_t *prfx_len, const char *name)
HDstrcat(HDstrcat(*prfx, "/"), name);
} /* end add_prefix */
-
-/*-------------------------------------------------------------------------
- * Function: dump_extlink
- *
- * made by: PVN
- *
- * Purpose: Dump an external link
- * Since external links are soft links, they are dumped on a trial error
- * basis, attempting to dump as a dataset, as a group and as a named datatype
- * Error messages are supressed
- *
- * Modifications:
- * Neil Fortner
- * 13 October 2008
- * Function basically rewritten. No longer directly opens the target file,
- * now initializes a new set of tables for the external file. No longer
- * dumps on a trial and error basis, but errors are still suppressed.
- *
- *-------------------------------------------------------------------------
- */
-
-
-static int dump_extlink(hid_t group, const char *linkname, const char *objname)
-{
- hid_t oid;
- H5O_info_t oi;
- table_t *old_group_table = group_table;
- table_t *old_dset_table = dset_table;
- table_t *old_type_table = type_table;
- hbool_t old_hit_elink;
- ssize_t idx;
-
- /* Open target object */
- if ((oid = H5Oopen(group, linkname, H5P_DEFAULT)) < 0)
- goto fail;
-
- /* Get object info */
- if (H5Oget_info(oid, &oi) < 0) {
- H5Oclose(oid);
- goto fail;
- }
-
- /* Check if we have visited this file already */
- if ((idx = table_list_visited(oi.fileno)) < 0) {
- /* We have not visited this file, build object tables */
- if ((idx = table_list_add(oid, oi.fileno)) < 0) {
- H5Oclose(oid);
- goto fail;
- }
- }
-
- /* Do not recurse through an external link into the original file (idx=0) */
- if (idx) {
- /* Update table pointers */
- group_table = table_list.tables[idx].group_table;
- dset_table = table_list.tables[idx].dset_table;
- type_table = table_list.tables[idx].type_table;
-
- /* We will now traverse the external link, set this global to indicate this */
- old_hit_elink = hit_elink;
- hit_elink = TRUE;
-
- /* add some indentation to distinguish that these objects are external */
- indent += 2*COL;
-
- /* Recurse into the external file */
- switch (oi.type) {
- case H5O_TYPE_GROUP:
- handle_groups(group, linkname, NULL, 0, objname);
- break;
- case H5O_TYPE_DATASET:
- handle_datasets(group, linkname, NULL, 0, objname);
- break;
- case H5O_TYPE_NAMED_DATATYPE:
- handle_datatypes(group, linkname, NULL, 0, objname);
- break;
- default:
- h5tools_setstatus(EXIT_FAILURE);
- }
-
- indent -= 2*COL;
-
- /* Reset table pointers */
- group_table = old_group_table;
- dset_table = old_dset_table;
- type_table = old_type_table;
-
- /* Reset hit_elink */
- hit_elink = old_hit_elink;
- } /* end if */
-
- if (H5Idec_ref(oid) < 0)
- h5tools_setstatus(EXIT_FAILURE);
-
- return SUCCEED;
-
-fail:
- return FAIL;
-}
-
diff --git a/tools/h5dump/h5dump.h b/tools/h5dump/h5dump.h
index be77002..7d4f460 100644
--- a/tools/h5dump/h5dump.h
+++ b/tools/h5dump/h5dump.h
@@ -16,148 +16,97 @@
#define H5DUMP_H__
#include "hdf5.h"
+#include "H5private.h"
+#include "h5tools.h"
+#include "h5tools_utils.h"
+#include "h5tools_ref.h"
+#include "h5trav.h"
+#include "h5dump_defines.h"
-#define H5DUMP_MAX_RANK H5S_MAX_RANK
+/**
+ ** This is the global dispatch table for the dump functions.
+ **/
+/* the table of dump functions */
+typedef struct dump_functions_t {
+ void (*dump_group_function) (hid_t, const char *);
+ void (*dump_named_datatype_function) (hid_t, const char *);
+ void (*dump_dataset_function) (hid_t, const char *, struct subset_t *);
+ void (*dump_dataspace_function) (hid_t);
+ void (*dump_datatype_function) (hid_t);
+ herr_t (*dump_attribute_function) (hid_t, const char *, const H5A_info_t *, void *);
+ void (*dump_data_function) (hid_t, int, struct subset_t *, int);
+} dump_functions;
-#define ATTRIBUTE_DATA 0
-#define DATASET_DATA 1
-#define ENUM_DATA 2
-#define COL 3
+/* List of table structures. There is one table structure for each file */
+typedef struct h5dump_table_list_t {
+ size_t nalloc;
+ size_t nused;
+ struct {
+ unsigned long fileno; /* File number that these tables refer to */
+ hid_t oid; /* ID of an object in this file, held open so fileno is consistent */
+ table_t *group_table; /* Table of groups */
+ table_t *dset_table; /* Table of datasets */
+ table_t *type_table; /* Table of datatypes */
+ } *tables;
+} h5dump_table_list_t;
-/* Strings for output */
-#define ATTRIBUTE "ATTRIBUTE"
-#define BLOCK "BLOCK"
-#define SUPER_BLOCK "SUPER_BLOCK"
-#define COMPRESSION "COMPRESSION"
-#define CONCATENATOR "//"
-#define COMPLEX "COMPLEX"
-#define COUNT "COUNT"
-#define CSET "CSET"
-#define CTYPE "CTYPE"
-#define DATA "DATA"
-#define DATASPACE "DATASPACE"
-#define EXTERNAL "EXTERNAL"
-#define FILENO "FILENO"
-#define HARDLINK "HARDLINK"
-#define NLINK "NLINK"
-#define OBJID "OBJECTID"
-#define OBJNO "OBJNO"
-#define S_SCALAR "SCALAR"
-#define S_SIMPLE "SIMPLE"
-#define S_NULL "NULL"
-#define SOFTLINK "SOFTLINK"
-#define EXTLINK "EXTERNAL_LINK"
-#define UDLINK "USERDEFINED_LINK"
-#define START "START"
-#define STRIDE "STRIDE"
-#define STRSIZE "STRSIZE"
-#define STRPAD "STRPAD"
-#define SUBSET "SUBSET"
-#define FILTERS "FILTERS"
-#define DEFLATE "COMPRESSION DEFLATE"
-#define DEFLATE_LEVEL "LEVEL"
-#define SHUFFLE "PREPROCESSING SHUFFLE"
-#define FLETCHER32 "CHECKSUM FLETCHER32"
-#define SZIP "COMPRESSION SZIP"
-#define NBIT "COMPRESSION NBIT"
-#define SCALEOFFSET "COMPRESSION SCALEOFFSET"
-#define SCALEOFFSET_MINBIT "MIN BITS"
-#define STORAGE_LAYOUT "STORAGE_LAYOUT"
-#define CONTIGUOUS "CONTIGUOUS"
-#define COMPACT "COMPACT"
-#define CHUNKED "CHUNKED"
-#define EXTERNAL_FILE "EXTERNAL_FILE"
-#define FILLVALUE "FILLVALUE"
-#define FILE_CONTENTS "FILE_CONTENTS"
-#define PACKED_BITS "PACKED_BITS"
-#define PACKED_OFFSET "OFFSET"
-#define PACKED_LENGTH "LENGTH"
+h5dump_table_list_t table_list = {0, 0, NULL};
+table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL;
+int dump_indent = 0; /*how far in to indent the line */
-#define BEGIN "{"
-#define END "}"
+int unamedtype = 0; /* shared datatype with no name */
+hbool_t hit_elink = FALSE; /* whether we have traversed an external link */
+size_t prefix_len = 1024;
+char *prefix = NULL;
+const char *fp_format = NULL;
-typedef struct h5dump_header_t {
- const char *name;
- const char *filebegin;
- const char *fileend;
- const char *bootblockbegin;
- const char *bootblockend;
- const char *groupbegin;
- const char *groupend;
- const char *datasetbegin;
- const char *datasetend;
- const char *attributebegin;
- const char *attributeend;
- const char *datatypebegin;
- const char *datatypeend;
- const char *dataspacebegin;
- const char *dataspaceend;
- const char *databegin;
- const char *dataend;
- const char *softlinkbegin;
- const char *softlinkend;
- const char *extlinkbegin;
- const char *extlinkend;
- const char *udlinkbegin;
- const char *udlinkend;
- const char *subsettingbegin;
- const char *subsettingend;
- const char *startbegin;
- const char *startend;
- const char *stridebegin;
- const char *strideend;
- const char *countbegin;
- const char *countend;
- const char *blockbegin;
- const char *blockend;
+/* things to display or which are set via command line parameters */
+int display_all = TRUE;
+int display_oid = FALSE;
+int display_data = TRUE;
+int display_attr_data = TRUE;
+int display_char = FALSE; /*print 1-byte numbers as ASCII */
+int usingdasho = FALSE;
+int display_bb = FALSE; /*superblock */
+int display_dcpl = FALSE; /*dcpl */
+int display_fi = FALSE; /*file index */
+int display_ai = TRUE; /*array index */
+int display_escape = FALSE; /*escape non printable characters */
+int display_region = FALSE; /*print region reference data */
+int enable_error_stack= FALSE; /* re-enable error stack */
+int disable_compact_subset= FALSE; /* disable compact form of subset notation */
+int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/
- const char *fileblockbegin;
- const char *fileblockend;
- const char *bootblockblockbegin;
- const char *bootblockblockend;
- const char *groupblockbegin;
- const char *groupblockend;
- const char *datasetblockbegin;
- const char *datasetblockend;
- const char *attributeblockbegin;
- const char *attributeblockend;
- const char *datatypeblockbegin;
- const char *datatypeblockend;
- const char *dataspaceblockbegin;
- const char *dataspaceblockend;
- const char *datablockbegin;
- const char *datablockend;
- const char *softlinkblockbegin;
- const char *softlinkblockend;
- const char *extlinkblockbegin;
- const char *extlinkblockend;
- const char *udlinkblockbegin;
- const char *udlinkblockend;
- const char *strblockbegin;
- const char *strblockend;
- const char *enumblockbegin;
- const char *enumblockend;
- const char *structblockbegin;
- const char *structblockend;
- const char *vlenblockbegin;
- const char *vlenblockend;
- const char *subsettingblockbegin;
- const char *subsettingblockend;
- const char *startblockbegin;
- const char *startblockend;
- const char *strideblockbegin;
- const char *strideblockend;
- const char *countblockbegin;
- const char *countblockend;
- const char *blockblockbegin;
- const char *blockblockend;
+/* sort parameters */
+H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */
+H5_iter_order_t sort_order = H5_ITER_INC; /*sort_order [ascending | descending] */
- const char *dataspacedescriptionbegin;
- const char *dataspacedescriptionend;
- const char *dataspacedimbegin;
- const char *dataspacedimend;
+#define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */
+#define PACKED_BITS_SIZE_MAX 8*sizeof(long long) /* Maximum bits size of integer types of packed-bits */
+/* mask list for packed bits */
+unsigned long long packed_mask[PACKED_BITS_MAX]; /* packed bits are restricted to 8*sizeof(llong) bytes */
-} h5dump_header_t;
+/* packed bits display parameters */
+int packed_offset[PACKED_BITS_MAX];
+int packed_length[PACKED_BITS_MAX];
+/*
+ * The global table is set to either ddl_function_table or
+ * xml_function_table in the initialization.
+ */
+const dump_functions *dump_function_table;
+
+#ifdef __cplusplus
+"C" {
+#endif
+
+void add_prefix(char **prfx, size_t *prfx_len, const char *name);
+hid_t h5_fileaccess(void);
+ssize_t table_list_add(hid_t oid, unsigned long file_no);
+ssize_t table_list_visited(unsigned long file_no);
+
+#ifdef __cplusplus
+}
+#endif
#endif /* !H5DUMP_H__ */
diff --git a/tools/h5dump/h5dump_ddl.c b/tools/h5dump/h5dump_ddl.c
new file mode 100644
index 0000000..48f1396
--- /dev/null
+++ b/tools/h5dump/h5dump_ddl.c
@@ -0,0 +1,1931 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+#include <stdio.h>
+#include <stdlib.h>
+
+#include "H5private.h"
+#include "h5tools.h"
+#include "h5tools_dump.h"
+#include "h5tools_utils.h"
+#include "h5tools_ref.h"
+#include "h5trav.h"
+#include "h5dump_extern.h"
+#include "h5dump_ddl.h"
+
+/*-------------------------------------------------------------------------
+ * Function: dump_datatype
+ *
+ * Purpose: Dump the datatype. Datatype can be HDF5 predefined
+ * atomic datatype or committed/transient datatype.
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+dump_datatype(hid_t type)
+{
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+
+ HDmemset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ h5dump_type_table = type_table;
+ h5tools_dump_datatype(stdout, outputformat, &ctx, type);
+ h5dump_type_table = NULL;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: dump_dataspace
+ *
+ * Purpose: Dump the dataspace. Dataspace can be named dataspace,
+ * array, or others.
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+dump_dataspace(hid_t space)
+{
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+
+ HDmemset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ h5tools_dump_dataspace(stdout, outputformat, &ctx, space);
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_attr_cb
+ *
+ * Purpose: attribute function callback called by H5Aiterate2, displays the attribute
+ *
+ * Return: Success: SUCCEED
+ *
+ * Failure: FAIL
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications: Pedro Vicente, October 4, 2007
+ * Added H5A_info_t parameter to conform with H5Aiterate2
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t UNUSED *info, void UNUSED *_op_data)
+{
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+ h5tool_format_t string_dataformat;
+
+ hid_t attr_id;
+ herr_t ret = SUCCEED;
+
+ HDmemset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT);
+ oid_output = display_oid;
+ data_output = display_data;
+ attr_data_output = display_attr_data;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ h5dump_type_table = type_table;
+ h5tools_dump_attribute(stdout, outputformat, &ctx, oid, attr_name, attr_id, display_ai, display_char);
+ h5dump_type_table = NULL;
+
+ if(attr_id < 0) {
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+
+ return ret;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: dump_all_cb
+ *
+ * Purpose: function callback called by H5Literate,
+ * displays everything in the specified object
+ *
+ * Return: Success: SUCCEED
+ *
+ * Failure: FAIL
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ * RMcG, November 2000
+ * Added XML support. Also, optionally checks the op_data argument
+ *
+ * PVN, May 2008
+ * Dump external links
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED *op_data)
+{
+ hid_t obj;
+ herr_t ret = SUCCEED;
+ char *obj_path = NULL; /* Full path of object */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ /* Build the object's path name */
+ obj_path = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ if(!obj_path) {
+ ret = FAIL;
+ goto done;
+ }
+
+ HDstrcpy(obj_path, prefix);
+ HDstrcat(obj_path, "/");
+ HDstrcat(obj_path, name);
+
+ if(linfo->type == H5L_TYPE_HARD) {
+ H5O_info_t oinfo;
+
+ /* Stat the object */
+ if(H5Oget_info_by_name(group, name, &oinfo, H5P_DEFAULT) < 0) {
+ error_msg("unable to get object information for \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ goto done;
+ } /* end if */
+
+ switch(oinfo.type) {
+ case H5O_TYPE_GROUP:
+ if((obj = H5Gopen2(group, name, H5P_DEFAULT)) < 0) {
+ error_msg("unable to dump group \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ char *old_prefix; /* Pointer to previous prefix */
+
+ /* Keep copy of prefix before iterating into group */
+ old_prefix = HDstrdup(prefix);
+ HDassert(old_prefix);
+
+ /* Append group name to prefix */
+ add_prefix(&prefix, &prefix_len, name);
+
+ /* Iterate into group */
+ dump_function_table->dump_group_function(obj, name);
+
+ /* Restore old prefix name */
+ HDstrcpy(prefix, old_prefix);
+ HDfree(old_prefix);
+
+ /* Close group */
+ H5Gclose(obj);
+ }
+ break;
+
+ case H5O_TYPE_DATASET:
+ if((obj = H5Dopen2(group, name, H5P_DEFAULT)) >= 0) {
+ if(oinfo.rc > 1 || hit_elink) {
+ obj_t *found_obj; /* Found object */
+
+ found_obj = search_obj(dset_table, oinfo.addr);
+
+ if(found_obj == NULL) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->datasetbegin, name,
+ h5tools_dump_header_format->datasetblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->datasetblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetblockend);
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ H5Dclose(obj);
+ goto done;
+ }
+ else if(found_obj->displayed) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->datasetbegin, name,
+ h5tools_dump_header_format->datasetblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\"", HARDLINK, found_obj->objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->datasetblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetblockend);
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ H5Dclose(obj);
+ goto done;
+ }
+ else {
+ found_obj->displayed = TRUE;
+ }
+ } /* end if */
+
+ dump_function_table->dump_dataset_function(obj, name, NULL);
+ H5Dclose(obj);
+ }
+ else {
+ error_msg("unable to dump dataset \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ break;
+
+ case H5O_TYPE_NAMED_DATATYPE:
+ if((obj = H5Topen2(group, name, H5P_DEFAULT)) < 0) {
+ error_msg("unable to dump datatype \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ dump_function_table->dump_named_datatype_function(obj, name);
+ H5Tclose(obj);
+ }
+ break;
+
+ default:
+ error_msg("unknown object \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ } /* end if */
+ else {
+ char *targbuf;
+
+ switch(linfo->type) {
+ case H5L_TYPE_SOFT:
+ targbuf = (char *)HDmalloc(linfo->u.val_size);
+ HDassert(targbuf);
+
+ ctx.need_prefix = TRUE;
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->softlinkbegin, name,
+ h5tools_dump_header_format->softlinkblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
+ error_msg("unable to get link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ /* print the value of a soft link */
+ /* Standard DDL: no modification */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "LINKTARGET \"%s\"", targbuf);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->softlinkblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->softlinkblockend);
+ if(strlen(h5tools_dump_header_format->softlinkend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->softlinkend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->softlinkend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(targbuf);
+ break;
+
+ case H5L_TYPE_EXTERNAL:
+ targbuf = (char *)HDmalloc(linfo->u.val_size);
+ HDassert(targbuf);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->extlinkbegin, name,
+ h5tools_dump_header_format->extlinkblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
+ indentation(dump_indent);
+ error_msg("unable to get external link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ } /* end if */
+ else {
+ const char *filename;
+ const char *targname;
+
+ if(H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &targname) < 0) {
+ indentation(dump_indent);
+ error_msg("unable to unpack external link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ } /* end if */
+ else {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "TARGETFILE \"%s\"", filename);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "TARGETPATH \"%s\"", targname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* dump the external link */
+ dump_extlink(group, name, targname);
+ ctx.indent_level--;
+ } /* end else */
+ } /* end else */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->extlinkblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->extlinkblockend);
+ if(strlen(h5tools_dump_header_format->extlinkend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->extlinkend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->extlinkend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(targbuf);
+ break;
+
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->udlinkbegin, name,
+ h5tools_dump_header_format->udlinkblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "LINKCLASS %d", linfo->type);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->udlinkblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->udlinkblockend);
+ if(strlen(h5tools_dump_header_format->udlinkend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->udlinkend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->udlinkend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ break;
+ } /* end switch */
+ } /* end else */
+
+done:
+
+ h5tools_str_close(&buffer);
+
+ if(obj_path)
+ HDfree(obj_path);
+ return ret;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: dump_named_datatype
+ *
+ * Purpose: Dump named datatype
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ * Pedro Vicente, March 27, 2006
+ * added display of attributes
+ * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for
+ * other iteration orders
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+dump_named_datatype(hid_t tid, const char *name)
+{
+ H5O_info_t oinfo;
+ unsigned attr_crt_order_flags;
+ hid_t tcpl_id = -1; /* datatype creation property list ID */
+ hsize_t curr_pos = 0; /* total data element position */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+ h5tool_format_t string_dataformat;
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ if ((tcpl_id = H5Tget_create_plist(tid)) < 0) {
+ error_msg("error in getting creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* query the creation properties for attributes */
+ if (H5Pget_attr_creation_order(tcpl_id, &attr_crt_order_flags) < 0) {
+ error_msg("error in getting creation properties\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ if(H5Pclose(tcpl_id) < 0) {
+ error_msg("error in closing creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ ctx.need_prefix = TRUE;
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->datatypebegin, name,
+ h5tools_dump_header_format->datatypeblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ H5Oget_info(tid, &oinfo);
+
+ /* Must check for uniqueness of all objects if we've traversed an elink,
+ * otherwise only check if the reference count > 1.
+ */
+ if(oinfo.rc > 1 || hit_elink) {
+ obj_t *found_obj; /* Found object */
+
+ found_obj = search_obj(type_table, oinfo.addr);
+
+ if (found_obj == NULL) {
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ else if (found_obj->displayed) {
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\"", HARDLINK, found_obj->objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ goto done;
+ }
+ else
+ found_obj->displayed = TRUE;
+ } /* end if */
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_print_datatype(stdout, &buffer, outputformat, &ctx, tid, FALSE);
+
+ if(H5Tget_class(tid) != H5T_COMPOUND) {
+ h5tools_str_append(&buffer, ";");
+ }
+
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* print attributes */
+ dump_indent += COL;
+
+ /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
+ in the datatype's create property list for attributes, then, sort by creation order, otherwise by name */
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if(H5Aiterate2(tid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if(H5Aiterate2(tid, H5_INDEX_NAME, sort_order, NULL, dump_attr_cb, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ dump_indent -= COL;
+
+done:
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->datatypeblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datatypeblockend);
+ if(strlen(h5tools_dump_header_format->datatypeend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->datatypeend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datatypeend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: dump_group
+ *
+ * Purpose: Dump everything within the specified group
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ * Call to dump_all_cb -- add parameter to select everything.
+ *
+ * Pedro Vicente, October 1, 2007
+ * handle several iteration orders for attributes and groups
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+dump_group(hid_t gid, const char *name)
+{
+ H5O_info_t oinfo;
+ hid_t dset;
+ hid_t type;
+ hid_t gcpl_id;
+ unsigned crt_order_flags;
+ unsigned attr_crt_order_flags;
+ char type_name[1024];
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
+ error_msg("error in getting group creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* query the group creation properties for attributes */
+ if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0) {
+ error_msg("error in getting group creation properties\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* query the group creation properties */
+ if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0) {
+ error_msg("error in getting group creation properties\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ if(H5Pclose(gcpl_id) < 0) {
+ error_msg("error in closing group creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.need_prefix = TRUE;
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->groupbegin, name,
+ h5tools_dump_header_format->groupblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if(!HDstrcmp(name, "/") && unamedtype) {
+ unsigned u; /* Local index variable */
+
+ /* dump unamed type in root group */
+ for(u = 0; u < type_table->nobjs; u++)
+ if(!type_table->objs[u].recorded) {
+ dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
+ type = H5Dget_type(dset);
+ sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
+ dump_function_table->dump_named_datatype_function(type, type_name);
+ H5Tclose(type);
+ H5Dclose(dset);
+ }
+ } /* end if */
+
+ if(display_oid) {
+ h5tools_dump_oid(stdout, outputformat, &ctx, gid);
+ }
+
+ h5tools_dump_comment(stdout, outputformat, &ctx, gid);
+
+ H5Oget_info(gid, &oinfo);
+
+ /* Must check for uniqueness of all objects if we've traversed an elink,
+ * otherwise only check if the reference count > 1.
+ */
+ if(oinfo.rc > 1 || hit_elink) {
+ obj_t *found_obj; /* Found object */
+
+ found_obj = search_obj(group_table, oinfo.addr);
+
+ if (found_obj == NULL) {
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ else if (found_obj->displayed) {
+ ctx.need_prefix = TRUE;
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\"", HARDLINK, found_obj->objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ found_obj->displayed = TRUE;
+ /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
+ in the group for attributes, then, sort by creation order, otherwise by name */
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_attr_cb, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ /* if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
+ in the group, then, sort by creation order, otherwise by name */
+ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
+ H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
+ else
+ H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
+ }
+ }
+ else {
+ /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
+ in the group for attributes, then, sort by creation order, otherwise by name */
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_attr_cb, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ /* if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
+ in the group, then, sort by creation order, otherwise by name */
+ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
+ H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
+ else
+ H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
+ }
+
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->groupblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->groupblockend);
+ if(strlen(h5tools_dump_header_format->groupend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->groupend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->groupend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: dump_dataset
+ *
+ * Purpose: Dump the specified data set
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ * Pedro Vicente, 2004, added dataset creation property list display
+ * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for
+ * other iteration orders
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+dump_dataset(hid_t did, const char *name, struct subset_t *sset)
+{
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+ h5tool_format_t string_dataformat;
+ hid_t type, space;
+ unsigned attr_crt_order_flags;
+ hid_t dcpl_id; /* dataset creation property list ID */
+ h5tools_str_t buffer; /* string into which to render */
+ hsize_t curr_pos = 0; /* total data element position */
+
+ HDmemset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ if ((dcpl_id = H5Dget_create_plist(did)) < 0) {
+ error_msg("error in getting creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* query the creation properties for attributes */
+ if (H5Pget_attr_creation_order(dcpl_id, &attr_crt_order_flags) < 0) {
+ error_msg("error in getting creation properties\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->datasetbegin, name,
+ h5tools_dump_header_format->datasetblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_dump_comment(stdout, outputformat, &ctx, did);
+
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ type = H5Dget_type(did);
+ h5dump_type_table = type_table;
+ h5tools_dump_datatype(stdout, outputformat, &ctx, type);
+ h5dump_type_table = NULL;
+
+ space = H5Dget_space(did);
+ h5tools_dump_dataspace(stdout, outputformat, &ctx, space);
+ H5Sclose(space);
+
+ if(display_oid) {
+ h5tools_dump_oid(stdout, outputformat, &ctx, did);
+ }
+
+ if(display_dcpl) {
+ h5dump_type_table = type_table;
+ h5tools_dump_dcpl(stdout, outputformat, &ctx, dcpl_id, type, did);
+ h5dump_type_table = NULL;
+ }
+ H5Pclose(dcpl_id);
+
+ if(display_data) {
+ int data_loop = 1;
+ int i;
+ if(display_packed_bits)
+ data_loop = packed_bits_num;
+ for(i=0; i<data_loop; i++) {
+ if(display_packed_bits) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ packed_data_mask = packed_mask[i];
+ packed_data_offset = packed_offset[i];
+ packed_data_length = packed_length[i];
+ h5tools_print_packed_bits(&buffer, type);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ switch(H5Tget_class(type)) {
+ case H5T_TIME:
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "DATA{ not yet implemented.}");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ break;
+
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ case H5T_COMPOUND:
+ case H5T_REFERENCE:
+ case H5T_ENUM:
+ case H5T_VLEN:
+ case H5T_ARRAY:
+ {
+ h5tools_dump_data(stdout, outputformat, &ctx, did, TRUE, sset, display_ai, display_char);
+ }
+ break;
+
+ default:
+ break;
+ } /* end switch */
+ } /* for(i=0;i<data_loop;i++) */
+ }
+ H5Tclose(type);
+
+ if (!bin_output) {
+ /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
+ in the group for attributes, then, sort by creation order, otherwise by name */
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if(H5Aiterate2(did, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if(H5Aiterate2(did, H5_INDEX_NAME, sort_order, NULL, dump_attr_cb, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->datasetblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetblockend);
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: dump_data
+ *
+ * Purpose: Dump attribute or dataset data
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications: pvn, print the matrix indices
+ * Albert Cheng, 2004/11/18
+ * Add --string printing for attributes too.
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
+{
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+ h5tool_format_t string_dataformat;
+ int print_dataset = FALSE;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ HDmemset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ if(obj_data == DATASET_DATA)
+ print_dataset = TRUE;
+ h5tools_dump_data(stdout, outputformat, &ctx, obj_id, print_dataset, sset, display_index, display_char);
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_fcpl
+ *
+ * Purpose: prints file creation property list information
+ *
+ * Return: void
+ *
+ * Programmer: pvn
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+dump_fcpl(hid_t fid)
+{
+ hid_t fcpl; /* file creation property list ID */
+ hsize_t userblock; /* userblock size retrieved from FCPL */
+ size_t off_size; /* size of offsets in the file */
+ size_t len_size; /* size of lengths in the file */
+#ifdef SHOW_FILE_DRIVER
+ hid_t fapl; /* file access property list ID */
+ hid_t fdriver; /* file driver */
+ char dname[32]; /* buffer to store driver name */
+#endif
+ unsigned sym_lk; /* symbol table B-tree leaf 'K' value */
+ unsigned sym_ik; /* symbol table B-tree internal 'K' value */
+ unsigned istore_ik; /* indexed storage B-tree internal 'K' value */
+ H5F_file_space_type_t fs_strategy; /* file space strategy */
+ hsize_t fs_threshold; /* free-space section threshold */
+ H5F_info2_t finfo; /* file information */
+
+ fcpl=H5Fget_create_plist(fid);
+ H5Fget_info2(fid, &finfo);
+ H5Pget_userblock(fcpl,&userblock);
+ H5Pget_sizes(fcpl,&off_size,&len_size);
+ H5Pget_sym_k(fcpl,&sym_ik,&sym_lk);
+ H5Pget_istore_k(fcpl,&istore_ik);
+ H5Pget_file_space(fcpl, &fs_strategy, &fs_threshold);
+ H5Pclose(fcpl);
+#ifdef SHOW_FILE_DRIVER
+ fapl=h5_fileaccess();
+ fdriver=H5Pget_driver(fapl);
+ H5Pclose(fapl);
+#endif
+
+ /*-------------------------------------------------------------------------
+ * SUPER_BLOCK
+ *-------------------------------------------------------------------------
+ */
+ HDfprintf(stdout, "\n%s %s\n",SUPER_BLOCK, BEGIN);
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %u\n","SUPERBLOCK_VERSION", finfo.super.version);
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %u\n","FREELIST_VERSION", finfo.free.version);
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %u\n","SYMBOLTABLE_VERSION", 0); /* Retain this for backward compatibility, for now (QAK) */
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %u\n","OBJECTHEADER_VERSION", finfo.sohm.version);
+ indentation(dump_indent + COL);
+ HDfprintf(stdout,"%s %Hd\n","OFFSET_SIZE", (long long)off_size);
+ indentation(dump_indent + COL);
+ HDfprintf(stdout,"%s %Hd\n","LENGTH_SIZE", (long long)len_size);
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %u\n","BTREE_RANK", sym_ik);
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %d\n","BTREE_LEAF", sym_lk);
+
+#ifdef SHOW_FILE_DRIVER
+ if (H5FD_CORE==fdriver)
+ HDstrcpy(dname,"H5FD_CORE");
+#ifdef H5_HAVE_DIRECT
+ else if (H5FD_DIRECT==fdriver)
+ HDstrcpy(dname,"H5FD_DIRECT");
+#endif
+ else if (H5FD_FAMILY==fdriver)
+ HDstrcpy(dname,"H5FD_FAMILY");
+ else if (H5FD_LOG==fdriver)
+ HDstrcpy(dname,"H5FD_LOG");
+ else if (H5FD_MPIO==fdriver)
+ HDstrcpy(dname,"H5FD_MPIO");
+ else if (H5FD_MULTI==fdriver)
+ HDstrcpy(dname,"H5FD_MULTI");
+ else if (H5FD_SEC2==fdriver)
+ HDstrcpy(dname,"H5FD_SEC2");
+ else if (H5FD_STDIO==fdriver)
+ HDstrcpy(dname,"H5FD_STDIO");
+#ifdef H5_HAVE_STREAM
+ else if (H5FD_STREAM==fdriver)
+ HDstrcpy(dname,"H5FD_STREAM");
+#endif
+ else
+ HDstrcpy(dname,"Unknown driver");
+
+ /* Take out this because the driver used can be different from the
+ * standard output. */
+ /*indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %s\n","FILE_DRIVER", dname);*/
+#endif
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %u\n","ISTORE_K", istore_ik);
+
+ indentation(dump_indent + COL);
+ if(fs_strategy == H5F_FILE_SPACE_ALL_PERSIST)
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_ALL_PERSIST");
+ else if(fs_strategy == H5F_FILE_SPACE_ALL)
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_ALL");
+ else if(fs_strategy == H5F_FILE_SPACE_AGGR_VFD)
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_AGGR_VFD");
+ else if(fs_strategy == H5F_FILE_SPACE_VFD)
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_VFD");
+ else
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "Unknown strategy");
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s %Hu\n","FREE_SPACE_THRESHOLD", fs_threshold);
+
+ /*-------------------------------------------------------------------------
+ * USER_BLOCK
+ *-------------------------------------------------------------------------
+ */
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "USER_BLOCK %s\n",BEGIN);
+ indentation(dump_indent + COL + COL);
+ HDfprintf(stdout,"%s %Hu\n","USERBLOCK_SIZE", userblock);
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s\n",END);
+
+ HDfprintf(stdout, "%s",END);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: dump_fcontents
+ *
+ * Purpose: prints all objects
+ *
+ * Return: void
+ *
+ * Programmer: pvn
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+dump_fcontents(hid_t fid)
+{
+ HDfprintf(stdout, "%s %s\n",FILE_CONTENTS, BEGIN);
+
+ /* special case of unamed types in root group */
+ if (unamedtype) {
+ unsigned u;
+
+ for (u = 0; u < type_table->nobjs; u++) {
+ if (!type_table->objs[u].recorded)
+ HDfprintf(stdout, " %-10s /#"H5_PRINTF_HADDR_FMT"\n", "datatype", type_table->objs[u].objno);
+ }
+ }
+
+ /* print objects in the files */
+ h5trav_print(fid);
+
+ HDfprintf(stdout, " %s\n",END);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: handle_attributes
+ *
+ * Purpose: Handle the attributes from the command.
+ *
+ * Return: void
+ *
+ * Programmer: Bill Wendling
+ * Tuesday, 9. January 2001
+ *
+ * Modifications:
+ *
+ * PVN, May 2008
+ * add an extra parameter PE, to allow printing/not printing of error messages
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+handle_attributes(hid_t fid, const char *attr, void UNUSED * data, int UNUSED pe, const char UNUSED *display_name)
+{
+ hid_t oid = -1;
+ hid_t attr_id = -1;
+ char *obj_name;
+ const char *attr_name;
+ int j;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &h5tools_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ j = (int)HDstrlen(attr) - 1;
+ obj_name = (char *)HDmalloc((size_t)j + 2);
+ if(obj_name == NULL)
+ goto error;
+
+ /* find the last / */
+ while(j >= 0) {
+ if (attr[j] == '/')
+ break;
+ j--;
+ }
+
+ /* object name */
+ if(j == -1)
+ HDstrcpy(obj_name, "/");
+ else {
+ HDstrncpy(obj_name, attr, (size_t)j + 1);
+ obj_name[j + 1] = '\0';
+ } /* end else */
+
+ dump_indent += COL;
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ attr_name = attr + j + 1;
+
+ /* Open the object with the attribute */
+ if((oid = H5Oopen(fid, obj_name, H5P_DEFAULT)) < 0) {
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->attributebegin, attr,
+ h5tools_dump_header_format->attributeblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ error_msg("unable to open object \"%s\"\n", obj_name);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->attributeblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->attributeblockend);
+ if(strlen(h5tools_dump_header_format->attributeend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->attributeend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->attributeend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+
+ goto error;
+ } /* end if */
+
+ attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT);
+ oid_output = display_oid;
+ data_output = display_data;
+ attr_data_output = display_attr_data;
+
+ h5dump_type_table = type_table;
+ h5tools_dump_attribute(stdout, outputformat, &ctx, oid, attr, attr_id, display_ai, display_char);
+ h5dump_type_table = NULL;
+
+ if(attr_id < 0) {
+ goto error;
+ }
+
+ /* Close object */
+ if(H5Oclose(oid) < 0) {
+ goto error;
+ } /* end if */
+
+ HDfree(obj_name);
+ dump_indent -= COL;
+ return;
+
+error:
+ h5tools_setstatus(EXIT_FAILURE);
+ if(obj_name)
+ HDfree(obj_name);
+
+ H5E_BEGIN_TRY {
+ H5Oclose(oid);
+ H5Aclose(attr_id);
+ } H5E_END_TRY;
+ dump_indent -= COL;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: handle_datasets
+ *
+ * Purpose: Handle the datasets from the command.
+ *
+ * Return: void
+ *
+ * Programmer: Bill Wendling
+ * Tuesday, 9. January 2001
+ *
+ * Modifications:
+ * Pedro Vicente, Tuesday, January 15, 2008
+ * check for block overlap\
+ *
+ * Pedro Vicente, May 8, 2008
+ * added a flag PE that prints/not prints error messages
+ * added for cases of external links not found, to avoid printing of
+ * objects not found, since external links are dumped on a trial error basis
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *display_name)
+{
+ H5O_info_t oinfo;
+ hid_t dsetid;
+ struct subset_t *sset = (struct subset_t *)data;
+ const char *real_name = display_name ? display_name : dset;
+
+ if((dsetid = H5Dopen2(fid, dset, H5P_DEFAULT)) < 0) {
+ if (pe) {
+ HDfprintf(stdout, "\n");
+ begin_obj(h5tools_dump_header_format->datasetbegin, real_name, h5tools_dump_header_format->datasetblockbegin);
+ HDfprintf(stdout, "\n");
+ indentation(COL);
+ error_msg("unable to open dataset \"%s\"\n", real_name);
+ end_obj(h5tools_dump_header_format->datasetend, h5tools_dump_header_format->datasetblockend);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ return;
+ } /* end if */
+
+ if(sset) {
+ unsigned int i;
+ hid_t sid = H5Dget_space(dsetid);
+ int ndims = H5Sget_simple_extent_ndims(sid);
+
+ H5Sclose(sid);
+ if(ndims < 0) {
+ error_msg("H5Sget_simple_extent_ndims failed\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ return;
+ }
+
+ if(!sset->start.data || !sset->stride.data || !sset->count.data || !sset->block.data) {
+ /* they didn't specify a ``stride'' or ``block''. default to 1 in all
+ * dimensions */
+ if(!sset->start.data) {
+ /* default to (0, 0, ...) for the start coord */
+ sset->start.data = (hsize_t *)calloc((size_t)ndims, sizeof(hsize_t));
+ sset->start.len = ndims;
+ }
+
+ if(!sset->stride.data) {
+ sset->stride.data = (hsize_t *)calloc((size_t)ndims, sizeof(hsize_t));
+ sset->stride.len = ndims;
+ for (i = 0; i < ndims; i++)
+ sset->stride.data[i] = 1;
+ }
+
+ if(!sset->count.data) {
+ sset->count.data = (hsize_t *)calloc((size_t)ndims, sizeof(hsize_t));
+ sset->count.len = ndims;
+ for (i = 0; i < ndims; i++)
+ sset->count.data[i] = 1;
+ }
+
+ if(!sset->block.data) {
+ sset->block.data = (hsize_t *)calloc((size_t)ndims, sizeof(hsize_t));
+ sset->block.len = ndims;
+ for (i = 0; i < ndims; i++)
+ sset->block.data[i] = 1;
+ }
+ }
+
+ /*-------------------------------------------------------------------------
+ * check for dimension overflow
+ *-------------------------------------------------------------------------
+ */
+ if(sset->start.len > ndims) {
+ error_msg("number of start dims (%u) exceed dataset dims (%u)\n", sset->start.len, ndims);
+ h5tools_setstatus(EXIT_FAILURE);
+ return;
+ }
+ if(sset->stride.len > ndims) {
+ error_msg("number of stride dims (%u) exceed dataset dims (%u)\n", sset->stride.len, ndims);
+ h5tools_setstatus(EXIT_FAILURE);
+ return;
+ }
+ if(sset->count.len > ndims) {
+ error_msg("number of count dims (%u) exceed dataset dims (%u)\n", sset->count.len, ndims);
+ h5tools_setstatus(EXIT_FAILURE);
+ return;
+ }
+ if(sset->block.len > ndims) {
+ error_msg("number of block dims (%u) exceed dataset dims (%u)\n", sset->block.len, ndims);
+ h5tools_setstatus(EXIT_FAILURE);
+ return;
+ }
+
+ /*-------------------------------------------------------------------------
+ * check for block overlap
+ *-------------------------------------------------------------------------
+ */
+ for(i = 0; i < ndims; i++) {
+ if(sset->count.data[i] > 1) {
+ if(sset->stride.data[i] < sset->block.data[i]) {
+ error_msg("wrong subset selection; blocks overlap\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ return;
+ } /* end if */
+ } /* end if */
+ } /* end for */
+ } /* end if */
+
+
+ H5Oget_info(dsetid, &oinfo);
+ if(oinfo.rc > 1 || hit_elink) {
+ obj_t *found_obj; /* Found object */
+
+ found_obj = search_obj(dset_table, oinfo.addr);
+
+ if(found_obj) {
+ if (found_obj->displayed) {
+ HDfprintf(stdout, "\n");
+ indentation(dump_indent);
+ begin_obj(h5tools_dump_header_format->datasetbegin, real_name, h5tools_dump_header_format->datasetblockbegin);
+ HDfprintf(stdout, "\n");
+ indentation(dump_indent + COL);
+ HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
+ indentation(dump_indent);
+ end_obj(h5tools_dump_header_format->datasetend, h5tools_dump_header_format->datasetblockend);
+ }
+ else {
+ found_obj->displayed = TRUE;
+ dump_indent += COL;
+ dump_dataset(dsetid, real_name, sset);
+ dump_indent -= COL;
+ }
+ }
+ else
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ else {
+ dump_indent += COL;
+ dump_dataset(dsetid, real_name, sset);
+ dump_indent -= COL;
+ }
+
+ if(H5Dclose(dsetid) < 0)
+ h5tools_setstatus(EXIT_FAILURE);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: handle_groups
+ *
+ * Purpose: Handle the groups from the command.
+ *
+ * Return: void
+ *
+ * Programmer: Bill Wendling
+ * Tuesday, 9. January 2001
+ *
+ * Modifications: Pedro Vicente, September 26, 2007
+ * handle creation order
+ *
+ * Pedro Vicente, May 8, 2008
+ * added a flag PE that prints/not prints error messages
+ * added for cases of external links not found, to avoid printing of
+ * objects not found, since external links are dumped on a trial error basis
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+handle_groups(hid_t fid, const char *group, void UNUSED *data, int pe, const char *display_name)
+{
+ hid_t gid;
+ const char *real_name = display_name ? display_name : group;
+
+ if((gid = H5Gopen2(fid, group, H5P_DEFAULT)) < 0) {
+ if (pe) {
+ HDfprintf(stdout, "\n");
+ begin_obj(h5tools_dump_header_format->groupbegin, real_name, h5tools_dump_header_format->groupblockbegin);
+ HDfprintf(stdout, "\n");
+ indentation(COL);
+ error_msg("unable to open group \"%s\"\n", real_name);
+ end_obj(h5tools_dump_header_format->groupend, h5tools_dump_header_format->groupblockend);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ }
+ else {
+ size_t new_len = HDstrlen(group) + 1;
+
+ if(prefix_len <= new_len) {
+ prefix_len = new_len;
+ prefix = (char *)HDrealloc(prefix, prefix_len);
+ } /* end if */
+
+ HDstrcpy(prefix, group);
+
+ dump_indent += COL;
+ dump_group(gid, real_name);
+ dump_indent -= COL;
+
+ if(H5Gclose(gid) < 0)
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end else */
+} /* end handle_groups() */
+
+/*-------------------------------------------------------------------------
+ * Function: handle_links
+ *
+ * Purpose: Handle soft or UD links from the command.
+ *
+ * Return: void
+ *
+ * Programmer: Bill Wendling
+ * Tuesday, 9. January 2001
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+handle_links(hid_t fid, const char *links, void UNUSED * data, int UNUSED pe, const char UNUSED *display_name)
+{
+ H5L_info_t linfo;
+
+ if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) {
+ error_msg("unable to get link info from \"%s\"\n", links);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ else if(linfo.type == H5L_TYPE_HARD) {
+ error_msg("\"%s\" is a hard link\n", links);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ else {
+ char *buf = (char *)HDmalloc(linfo.u.val_size);
+ HDfprintf(stdout, "\n");
+
+ switch(linfo.type) {
+ case H5L_TYPE_SOFT: /* Soft link */
+ begin_obj(h5tools_dump_header_format->softlinkbegin, links, h5tools_dump_header_format->softlinkblockbegin);
+ HDfprintf(stdout, "\n");
+ indentation(COL);
+ if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0)
+ HDfprintf(stdout, "LINKTARGET \"%s\"\n", buf);
+ else {
+ error_msg("h5dump error: unable to get link value for \"%s\"\n", links);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ end_obj(h5tools_dump_header_format->softlinkend, h5tools_dump_header_format->softlinkblockend);
+ break;
+
+ case H5L_TYPE_EXTERNAL:
+ begin_obj(h5tools_dump_header_format->udlinkbegin, links, h5tools_dump_header_format->udlinkblockbegin);
+ HDfprintf(stdout, "\n");
+ indentation(COL);
+ begin_obj(h5tools_dump_header_format->extlinkbegin, links, h5tools_dump_header_format->extlinkblockbegin);
+ HDfprintf(stdout, "\n");
+ if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) {
+ const char *elink_file;
+ const char *elink_path;
+
+ if(H5Lunpack_elink_val(buf, linfo.u.val_size, NULL, &elink_file, &elink_path)>=0) {
+ indentation(COL);
+ HDfprintf(stdout, "LINKCLASS %d\n", linfo.type);
+ indentation(COL);
+ HDfprintf(stdout, "TARGETFILE \"%s\"\n", elink_file);
+ indentation(COL);
+ HDfprintf(stdout, "TARGETPATH \"%s\"\n", elink_path);
+ }
+ else {
+ error_msg("h5dump error: unable to unpack external link value for \"%s\"\n", links);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ }
+ else {
+ error_msg("h5dump error: unable to get external link value for \"%s\"\n", links);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ end_obj(h5tools_dump_header_format->extlinkend, h5tools_dump_header_format->extlinkblockend);
+ break;
+
+ default:
+ begin_obj(h5tools_dump_header_format->udlinkbegin, links, h5tools_dump_header_format->udlinkblockbegin);
+ HDfprintf(stdout, "\n");
+ indentation(COL);
+ begin_obj(h5tools_dump_header_format->udlinkbegin, links, h5tools_dump_header_format->udlinkblockbegin);
+ HDfprintf(stdout, "\n");
+ indentation(COL);
+ HDfprintf(stdout, "LINKCLASS %d\n", linfo.type);
+ end_obj(h5tools_dump_header_format->udlinkend, h5tools_dump_header_format->udlinkblockend);
+ break;
+ } /* end switch */
+ HDfree(buf);
+ } /* end else */
+}
+
+/*-------------------------------------------------------------------------
+ * Function: handle_datatypes
+ *
+ * Purpose: Handle the datatypes from the command.
+ *
+ * Return: void
+ *
+ * Programmer: Bill Wendling
+ * Tuesday, 9. January 2001
+ *
+ * Modifications:
+ *
+ * Pedro Vicente, May 8, 2008
+ * added a flag PE that prints/not prints error messages
+ * added for cases of external links not found, to avoid printing of
+ * objects not found, since external links are dumped on a trial error basis
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+handle_datatypes(hid_t fid, const char *type, void UNUSED * data, int pe, const char *display_name)
+{
+ hid_t type_id;
+ const char *real_name = display_name ? display_name : type;
+
+ if((type_id = H5Topen2(fid, type, H5P_DEFAULT)) < 0) {
+ /* check if type is unamed datatype */
+ unsigned idx = 0;
+
+ while(idx < type_table->nobjs ) {
+ char name[128];
+
+ if(!type_table->objs[idx].recorded) {
+ /* unamed datatype */
+ sprintf(name, "/#"H5_PRINTF_HADDR_FMT, type_table->objs[idx].objno);
+
+ if(!HDstrcmp(name, real_name))
+ break;
+ } /* end if */
+
+ idx++;
+ } /* end while */
+
+ if(idx == type_table->nobjs) {
+ if (pe) {
+ /* unknown type */
+ HDfprintf(stdout, "\n");
+ begin_obj(h5tools_dump_header_format->datatypebegin, real_name, h5tools_dump_header_format->datatypeblockbegin);
+ HDfprintf(stdout, "\n");
+ indentation(COL);
+ error_msg("unable to open datatype \"%s\"\n", real_name);
+ end_obj(h5tools_dump_header_format->datatypeend, h5tools_dump_header_format->datatypeblockend);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ }
+ else {
+ hid_t dsetid = H5Dopen2(fid, type_table->objs[idx].objname, H5P_DEFAULT);
+ type_id = H5Dget_type(dsetid);
+
+ dump_indent += COL;
+ dump_named_datatype(type_id, real_name);
+ dump_indent -= COL;
+
+ H5Tclose(type_id);
+ H5Dclose(dsetid);
+ }
+ }
+ else {
+ dump_indent += COL;
+ dump_named_datatype(type_id, real_name);
+ dump_indent -= COL;
+
+ if(H5Tclose(type_id) < 0)
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: dump_extlink
+ *
+ * made by: PVN
+ *
+ * Purpose: Dump an external link
+ * Since external links are soft links, they are dumped on a trial error
+ * basis, attempting to dump as a dataset, as a group and as a named datatype
+ * Error messages are supressed
+ *
+ * Modifications:
+ * Neil Fortner
+ * 13 October 2008
+ * Function basically rewritten. No longer directly opens the target file,
+ * now initializes a new set of tables for the external file. No longer
+ * dumps on a trial and error basis, but errors are still suppressed.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+static int dump_extlink(hid_t group, const char *linkname, const char *objname)
+{
+ hid_t oid;
+ H5O_info_t oi;
+ table_t *old_group_table = group_table;
+ table_t *old_dset_table = dset_table;
+ table_t *old_type_table = type_table;
+ hbool_t old_hit_elink;
+ ssize_t idx;
+
+ /* Open target object */
+ if ((oid = H5Oopen(group, linkname, H5P_DEFAULT)) < 0)
+ goto fail;
+
+ /* Get object info */
+ if (H5Oget_info(oid, &oi) < 0) {
+ H5Oclose(oid);
+ goto fail;
+ }
+
+ /* Check if we have visited this file already */
+ if ((idx = table_list_visited(oi.fileno)) < 0) {
+ /* We have not visited this file, build object tables */
+ if ((idx = table_list_add(oid, oi.fileno)) < 0) {
+ H5Oclose(oid);
+ goto fail;
+ }
+ }
+
+ /* Do not recurse through an external link into the original file (idx=0) */
+ if (idx) {
+ /* Update table pointers */
+ group_table = table_list.tables[idx].group_table;
+ dset_table = table_list.tables[idx].dset_table;
+ type_table = table_list.tables[idx].type_table;
+
+ /* We will now traverse the external link, set this global to indicate this */
+ old_hit_elink = hit_elink;
+ hit_elink = TRUE;
+
+ /* add some indentation to distinguish that these objects are external */
+ dump_indent += COL;
+
+ /* Recurse into the external file */
+ switch (oi.type) {
+ case H5O_TYPE_GROUP:
+ handle_groups(group, linkname, NULL, 0, objname);
+ break;
+ case H5O_TYPE_DATASET:
+ handle_datasets(group, linkname, NULL, 0, objname);
+ break;
+ case H5O_TYPE_NAMED_DATATYPE:
+ handle_datatypes(group, linkname, NULL, 0, objname);
+ break;
+ default:
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ dump_indent -= COL;
+
+ /* Reset table pointers */
+ group_table = old_group_table;
+ dset_table = old_dset_table;
+ type_table = old_type_table;
+
+ /* Reset hit_elink */
+ hit_elink = old_hit_elink;
+ } /* end if */
+
+ if (H5Idec_ref(oid) < 0)
+ h5tools_setstatus(EXIT_FAILURE);
+
+ return SUCCEED;
+
+fail:
+ return FAIL;
+}
+
diff --git a/tools/h5dump/h5dump_ddl.h b/tools/h5dump/h5dump_ddl.h
new file mode 100644
index 0000000..c769194
--- /dev/null
+++ b/tools/h5dump/h5dump_ddl.h
@@ -0,0 +1,50 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+#ifndef H5DUMP_DDL_H__
+#define H5DUMP_DDL_H__
+
+/* callback function used by H5Literate() */
+static herr_t dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void *op_data);
+static int dump_extlink(hid_t group, const char *linkname, const char *objname);
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* The dump functions of the dump_function_table */
+/* standard format: no change */
+void dump_group(hid_t, const char *);
+void dump_named_datatype(hid_t, const char *);
+void dump_dataset(hid_t, const char *, struct subset_t *);
+void dump_dataspace(hid_t space);
+void dump_datatype(hid_t type);
+void dump_data(hid_t, int, struct subset_t *, int);
+void dump_fcpl(hid_t fid);
+void dump_fcontents(hid_t fid);
+
+/* callback function used by H5Aiterate2() */
+herr_t dump_attr_cb(hid_t loc_id, const char *attr_name, const H5A_info_t *info, void *_op_data);
+
+void handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *display_name);
+void handle_attributes(hid_t fid, const char *attr, void UNUSED * data, int UNUSED pe, const char UNUSED *display_name);
+void handle_groups(hid_t fid, const char *group, void UNUSED *data, int pe, const char *display_name);
+void handle_links(hid_t fid, const char *links, void UNUSED * data, int UNUSED pe, const char UNUSED *display_name);
+void handle_datatypes(hid_t fid, const char *type, void UNUSED * data, int pe, const char *display_name);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* !H5DUMP_DDL_H__ */
diff --git a/tools/h5dump/h5dump_defines.h b/tools/h5dump/h5dump_defines.h
new file mode 100644
index 0000000..a801cac
--- /dev/null
+++ b/tools/h5dump/h5dump_defines.h
@@ -0,0 +1,54 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+#ifndef H5DUMP_DEFINES_H__
+#define H5DUMP_DEFINES_H__
+
+#define H5DUMP_MAX_RANK H5S_MAX_RANK
+
+#define ATTRIBUTE_DATA 0
+#define DATASET_DATA 1
+#define ENUM_DATA 2
+#define COL 3
+
+/* Macros for displaying objects */
+#define begin_obj(obj,name,begin) \
+ do { \
+ if (name) \
+ HDfprintf(stdout, "%s \"%s\" %s", (obj), (name), (begin)); \
+ else \
+ HDfprintf(stdout, "%s %s", (obj), (begin)); \
+ } while(0);
+
+#define end_obj(obj,end) \
+ do { \
+ if(HDstrlen(end)) { \
+ HDfprintf(stdout, "%s", end); \
+ if(HDstrlen(obj)) \
+ HDfprintf(stdout, " "); \
+ } \
+ if(HDstrlen(obj)) \
+ HDfprintf(stdout, "%s", obj); \
+ } while(0);
+
+
+/* 3 private values: can't be set, but can be read.
+ Note: these are defined in H5Zprivate, they are
+ duplicated here.
+ */
+#define H5_SZIP_LSB_OPTION_MASK 8
+#define H5_SZIP_MSB_OPTION_MASK 16
+#define H5_SZIP_RAW_OPTION_MASK 128
+
+#endif /* !H5DUMP_DEFINES_H__ */
diff --git a/tools/h5dump/h5dump_extern.h b/tools/h5dump/h5dump_extern.h
new file mode 100644
index 0000000..5a0f2bd
--- /dev/null
+++ b/tools/h5dump/h5dump_extern.h
@@ -0,0 +1,112 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+#ifndef H5DUMP_EXTERN_H__
+#define H5DUMP_EXTERN_H__
+
+#include "hdf5.h"
+#include "H5private.h"
+#include "h5tools.h"
+#include "h5tools_utils.h"
+#include "h5tools_ref.h"
+#include "h5trav.h"
+#include "h5dump_defines.h"
+
+/**
+ ** This is the global dispatch table for the dump functions.
+ **/
+/* the table of dump functions */
+typedef struct dump_functions_t {
+ void (*dump_group_function) (hid_t, const char *);
+ void (*dump_named_datatype_function) (hid_t, const char *);
+ void (*dump_dataset_function) (hid_t, const char *, struct subset_t *);
+ void (*dump_dataspace_function) (hid_t);
+ void (*dump_datatype_function) (hid_t);
+ herr_t (*dump_attribute_function) (hid_t, const char *, const H5A_info_t *, void *);
+ void (*dump_data_function) (hid_t, int, struct subset_t *, int);
+} dump_functions;
+
+/* List of table structures. There is one table structure for each file */
+typedef struct h5dump_table_list_t {
+ size_t nalloc;
+ size_t nused;
+ struct {
+ unsigned long fileno; /* File number that these tables refer to */
+ hid_t oid; /* ID of an object in this file, held open so fileno is consistent */
+ table_t *group_table; /* Table of groups */
+ table_t *dset_table; /* Table of datasets */
+ table_t *type_table; /* Table of datatypes */
+ } *tables;
+} h5dump_table_list_t;
+
+extern h5dump_table_list_t table_list;
+extern table_t *group_table, *dset_table, *type_table;
+extern int dump_indent; /*how far in to indent the line */
+
+extern int unamedtype; /* shared datatype with no name */
+extern hbool_t hit_elink; /* whether we have traversed an external link */
+extern size_t prefix_len;
+extern char *prefix;
+extern const char *fp_format;
+
+/* things to display or which are set via command line parameters */
+extern int display_all;
+extern int display_oid;
+extern int display_data;
+extern int display_attr_data;
+extern int display_char; /*print 1-byte numbers as ASCII */
+extern int usingdasho;
+extern int display_bb; /*superblock */
+extern int display_dcpl; /*dcpl */
+extern int display_fi; /*file index */
+extern int display_ai; /*array index */
+extern int display_escape; /*escape non printable characters */
+extern int display_region; /*print region reference data */
+extern int enable_error_stack; /* re-enable error stack */
+extern int disable_compact_subset; /* disable compact form of subset notation */
+extern int display_packed_bits; /*print 1-8 byte numbers as packed bits*/
+
+/* sort parameters */
+extern H5_index_t sort_by; /*sort_by [creation_order | name] */
+extern H5_iter_order_t sort_order; /*sort_order [ascending | descending] */
+
+#define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */
+#define PACKED_BITS_SIZE_MAX 8*sizeof(long long) /* Maximum bits size of integer types of packed-bits */
+/* mask list for packed bits */
+extern unsigned long long packed_mask[PACKED_BITS_MAX]; /* packed bits are restricted to 8*sizeof(llong) bytes */
+
+/* packed bits display parameters */
+extern int packed_offset[PACKED_BITS_MAX];
+extern int packed_length[PACKED_BITS_MAX];
+
+/*
+ * The global table is set to either ddl_function_table or
+ * xml_function_table in the initialization.
+ */
+extern const dump_functions *dump_function_table;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+void add_prefix(char **prfx, size_t *prfx_len, const char *name);
+hid_t h5_fileaccess(void);
+ssize_t table_list_add(hid_t oid, unsigned long file_no);
+ssize_t table_list_visited(unsigned long file_no);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* !H5DUMP_EXTERN_H__ */
diff --git a/tools/h5dump/h5dump_xml.c b/tools/h5dump/h5dump_xml.c
new file mode 100644
index 0000000..cc16463
--- /dev/null
+++ b/tools/h5dump/h5dump_xml.c
@@ -0,0 +1,4456 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+#include <stdio.h>
+#include <stdlib.h>
+
+#include "H5private.h"
+#include "h5tools.h"
+#include "h5tools_dump.h"
+#include "h5tools_utils.h"
+#include "h5tools_ref.h"
+#include "h5trav.h"
+#include "h5dump_extern.h"
+#include "h5dump_xml.h"
+
+const char *xmlnsprefix="hdf5:";
+
+/* internal functions */
+static int xml_name_to_XID(const char *, char *, int , int );
+
+/* internal functions used by XML option */
+static void xml_print_datatype(hid_t, unsigned);
+static void xml_print_enum(hid_t);
+static int xml_print_refs(hid_t, int);
+static int xml_print_strs(hid_t, int);
+static char *xml_escape_the_string(const char *, int);
+static char *xml_escape_the_name(const char *);
+
+/*-------------------------------------------------------------------------
+ * Function: dump_all_cb
+ *
+ * Purpose: function callback called by H5Literate,
+ * displays everything in the specified object
+ *
+ * Return: Success: SUCCEED
+ *
+ * Failure: FAIL
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ * RMcG, November 2000
+ * Added XML support. Also, optionally checks the op_data argument
+ *
+ * PVN, May 2008
+ * Dump external links
+ *
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED *op_data)
+{
+ hid_t obj;
+ herr_t ret = SUCCEED;
+ char *obj_path = NULL; /* Full path of object */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ /* Build the object's path name */
+ obj_path = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ if(!obj_path) {
+ ret = FAIL;
+ goto done;
+ }
+
+ HDstrcpy(obj_path, prefix);
+ HDstrcat(obj_path, "/");
+ HDstrcat(obj_path, name);
+
+ if(linfo->type == H5L_TYPE_HARD) {
+ H5O_info_t oinfo;
+
+ /* Stat the object */
+ if(H5Oget_info_by_name(group, name, &oinfo, H5P_DEFAULT) < 0) {
+ error_msg("unable to get object information for \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ goto done;
+ } /* end if */
+
+ switch(oinfo.type) {
+ case H5O_TYPE_GROUP:
+ if((obj = H5Gopen2(group, name, H5P_DEFAULT)) < 0) {
+ error_msg("unable to dump group \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ char *old_prefix; /* Pointer to previous prefix */
+
+ /* Keep copy of prefix before iterating into group */
+ old_prefix = HDstrdup(prefix);
+ HDassert(old_prefix);
+
+ /* Append group name to prefix */
+ add_prefix(&prefix, &prefix_len, name);
+
+ /* Iterate into group */
+ dump_function_table->dump_group_function(obj, name);
+
+ /* Restore old prefix name */
+ HDstrcpy(prefix, old_prefix);
+ HDfree(old_prefix);
+
+ /* Close group */
+ H5Gclose(obj);
+ }
+ break;
+
+ case H5O_TYPE_DATASET:
+ if((obj = H5Dopen2(group, name, H5P_DEFAULT)) >= 0) {
+ if(oinfo.rc > 1 || hit_elink) {
+ obj_t *found_obj; /* Found object */
+
+ found_obj = search_obj(dset_table, oinfo.addr);
+
+ if(found_obj == NULL) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s \"%s\" %s",
+ h5tools_dump_header_format->datasetbegin, name,
+ h5tools_dump_header_format->datasetblockbegin);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(strlen(h5tools_dump_header_format->datasetblockend)) {
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetblockend);
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, " ");
+ }
+ if(strlen(h5tools_dump_header_format->datasetend))
+ h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetend);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ H5Dclose(obj);
+ goto done;
+ }
+ else if(found_obj->displayed) {
+ /* the XML version */
+ char *t_obj_path = xml_escape_the_name(obj_path);
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_name = xml_escape_the_name(name);
+ char *t_objname = xml_escape_the_name(found_obj->objname);
+ char dsetxid[100];
+ char parentxid[100];
+ char pointerxid[100];
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(obj_path, dsetxid, sizeof(dsetxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" "
+ "H5Path=\"%s\" Parents=\"%s\" "
+ "H5ParentPaths=\"%s\">",
+ xmlnsprefix,
+ t_name, /* Dataset Name */
+ dsetxid, get_next_xid(), /* OBJ-XID */
+ t_obj_path, /* H5Path */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>",
+ xmlnsprefix,
+ pointerxid,t_objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataset>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(t_name);
+ HDfree(t_obj_path);
+ HDfree(t_prefix);
+ HDfree(t_objname);
+
+ H5Dclose(obj);
+ goto done;
+ }
+ else {
+ found_obj->displayed = TRUE;
+ }
+ } /* end if */
+
+ dump_function_table->dump_dataset_function(obj, name, NULL);
+ H5Dclose(obj);
+ }
+ else {
+ error_msg("unable to dump dataset \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ break;
+
+ case H5O_TYPE_NAMED_DATATYPE:
+ if((obj = H5Topen2(group, name, H5P_DEFAULT)) < 0) {
+ error_msg("unable to dump datatype \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ dump_function_table->dump_named_datatype_function(obj, name);
+ H5Tclose(obj);
+ }
+ break;
+
+ default:
+ error_msg("unknown object \"%s\"\n", name);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ } /* end if */
+ else {
+ char *targbuf;
+
+ switch(linfo->type) {
+ case H5L_TYPE_SOFT:
+ targbuf = (char *)HDmalloc(linfo->u.val_size);
+ HDassert(targbuf);
+
+ if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
+ error_msg("unable to get link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ /* print the value of a soft link */
+ /* XML */
+ char linkxid[100];
+ char parentxid[100];
+ char targetxid[100];
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_name = xml_escape_the_name(name);
+ char *t_targbuf = xml_escape_the_name(targbuf);
+ char *t_obj_path = xml_escape_the_name(obj_path);
+ char *t_link_path;
+ int res;
+
+ t_link_path = (char *)HDmalloc(HDstrlen(prefix) + linfo->u.val_size + 1);
+ if(targbuf[0] == '/')
+ HDstrcpy(t_link_path, targbuf);
+ else {
+ HDstrcpy(t_link_path, prefix);
+ HDstrcat(HDstrcat(t_link_path, "/"), targbuf);
+ } /* end else */
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ /* Try to create an OBJ-XID for the object pointed to */
+ res = xml_name_to_XID(t_link_path, targetxid, sizeof(targetxid), 0);
+ if (res == 0) {
+ /* target obj found */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sSoftLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "TargetPath=\"%s\" TargetObj=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ t_targbuf, /* TargetPath */
+ targetxid, /* TargetObj */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ /* dangling link -- omit from xml attributes */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sSoftLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "TargetPath=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ t_targbuf, /* TargetPath */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(t_targbuf);
+ HDfree(t_obj_path);
+ HDfree(t_link_path);
+ }
+
+ HDfree(targbuf);
+ break;
+
+ case H5L_TYPE_EXTERNAL:
+ targbuf = (char *)HDmalloc(linfo->u.val_size);
+ HDassert(targbuf);
+
+ if(H5Lget_val(group, name, targbuf, linfo->u.val_size, H5P_DEFAULT) < 0) {
+ error_msg("unable to get external link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ } /* end if */
+ else {
+ const char *filename;
+ const char *targname;
+
+ if(H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &targname) < 0) {
+ error_msg("unable to unpack external link value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ } /* end if */
+ else {
+ char linkxid[100];
+ char parentxid[100];
+ char *t_name = xml_escape_the_name(name);
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_obj_path = xml_escape_the_name(obj_path);
+ char *t_filename = xml_escape_the_name(filename);
+ char *t_targname = xml_escape_the_name(targname);
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sExternalLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "TargetFilename=\"%s\" "
+ "TargetPath=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ filename, /* TargetFilename */
+ targname, /* TargetPath*/
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(t_filename);
+ HDfree(t_targname);
+ HDfree(t_obj_path);
+ } /* end else */
+ } /* end else */
+ HDfree(targbuf);
+ break;
+
+ default:
+ {
+ char linkxid[100];
+ char parentxid[100];
+ char *t_name = xml_escape_the_name(name);
+ char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
+ char *t_obj_path = xml_escape_the_name(obj_path);
+
+ /* Create OBJ-XIDs for the parent and object */
+ xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
+ xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sUserDefined LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "LinkClass=\"%d\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ linfo->type, /* LinkClass */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(t_obj_path);
+ }
+ break;
+ } /* end switch */
+ } /* end else */
+
+done:
+
+ h5tools_str_close(&buffer);
+
+ if(obj_path)
+ HDfree(obj_path);
+ return ret;
+}
+
+/*
+ * create a string suitable for and XML NCNAME. Uses the
+ * object reference to create the string.
+ *
+ * 'gen'; 0 - return null if not found
+ * 1 - generate a fake entry and return fake id.
+ */
+int
+xml_name_to_XID(const char *str , char *outstr, int outlen, int gen)
+{
+ haddr_t objno; /* Object ID for object at path */
+
+ if (outlen < 22) return 1;
+
+ objno = ref_path_table_lookup(str);
+ if (objno == HADDR_UNDEF) {
+ if (HDstrlen(str) == 0) {
+ objno = ref_path_table_lookup("/");
+ if (objno == HADDR_UNDEF) {
+ if (gen) {
+ objno = ref_path_table_gen_fake(str);
+ sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
+ return 0;
+ }
+ else {
+ return 1;
+ }
+ }
+ }
+ else {
+ if (gen) {
+ objno = ref_path_table_gen_fake(str);
+ sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
+ return 0;
+ }
+ else {
+ return 1;
+ }
+ }
+ }
+
+ sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
+
+ return(0);
+}
+
+static const char *quote = "&quot;";
+static const char *amp = "&amp;";
+static const char *lt = "&lt;";
+static const char *gt = "&gt;";
+static const char *apos = "&apos;";
+
+/*-------------------------------------------------------------------------
+ * Function: xml_escape_the_name
+ *
+ * Purpose: Escape XML reserved chars in a name, so HDF5 strings
+ * and paths can be correctly read back in XML element.
+ *
+ * Return: The revised string.
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+xml_escape_the_name(const char *str)
+{
+ size_t extra;
+ size_t len;
+ size_t i;
+ const char *cp;
+ char *ncp;
+ char *rcp;
+
+ if (!str)
+ return NULL;
+
+ cp = str;
+ len = strlen(str);
+ extra = 0;
+
+ for (i = 0; i < len; i++) {
+ if (*cp == '\"') {
+ extra += (strlen(quote) - 1);
+ }
+ else if (*cp == '\'') {
+ extra += (strlen(apos) - 1);
+ }
+ else if (*cp == '<') {
+ extra += (strlen(lt) - 1);
+ }
+ else if (*cp == '>') {
+ extra += (strlen(gt) - 1);
+ }
+ else if (*cp == '&') {
+ extra += (strlen(amp) - 1);
+ }
+
+ cp++;
+ }
+
+ if (extra == 0)
+ return HDstrdup(str);
+
+ cp = str;
+ rcp = ncp = (char *)HDmalloc(len + extra + 1);
+
+ if (!ncp)
+ return NULL; /* ?? */
+
+ for (i = 0; i < len; i++) {
+ if (*cp == '\'') {
+ strncpy(ncp, apos, strlen(apos));
+ ncp += strlen(apos);
+ cp++;
+ }
+ else if (*cp == '<') {
+ strncpy(ncp, lt, strlen(lt));
+ ncp += strlen(lt);
+ cp++;
+ }
+ else if (*cp == '>') {
+ strncpy(ncp, gt, strlen(gt));
+ ncp += strlen(gt);
+ cp++;
+ }
+ else if (*cp == '\"') {
+ strncpy(ncp, quote, strlen(quote));
+ ncp += strlen(quote);
+ cp++;
+ }
+ else if (*cp == '&') {
+ strncpy(ncp, amp, strlen(amp));
+ ncp += strlen(amp);
+ cp++;
+ }
+ else {
+ *ncp++ = *cp++;
+ }
+ }
+
+ *ncp = '\0';
+ return rcp;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_escape_the_string
+ *
+ * Purpose: Escape XML reserved chars in a string, so HDF5 strings
+ * and paths can be correctly read back in XML CDATA.
+ *
+ * Return: The revised string.
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+xml_escape_the_string(const char *str, int slen)
+{
+ size_t extra;
+ size_t len;
+ size_t i;
+ const char *cp;
+ char *ncp;
+ char *rcp;
+
+ if (!str)
+ return NULL;
+
+ cp = str;
+
+ if (slen < 0)
+ len = strlen(str);
+ else
+ len = slen;
+
+ extra = 0;
+
+ for (i = 0; i < len; i++) {
+ if (*cp == '\\') {
+ extra++;
+ }
+ else if (*cp == '\"') {
+ extra++;
+ }
+ else if (*cp == '\'') {
+ extra += (strlen(apos) - 1);
+ }
+ else if (*cp == '<') {
+ extra += (strlen(lt) - 1);
+ }
+ else if (*cp == '>') {
+ extra += (strlen(gt) - 1);
+ }
+ else if (*cp == '&') {
+ extra += (strlen(amp) - 1);
+ }
+ cp++;
+ }
+
+ cp = str;
+ rcp = ncp = (char *) calloc((len + extra + 1), sizeof(char));
+
+ if (ncp == NULL)
+ return NULL; /* ?? */
+
+ for (i = 0; i < len; i++) {
+ if (*cp == '\\') {
+ *ncp++ = '\\';
+ *ncp++ = *cp++;
+ }
+ else if (*cp == '\"') {
+ *ncp++ = '\\';
+ *ncp++ = *cp++;
+ }
+ else if (*cp == '\'') {
+ strncpy(ncp, apos, strlen(apos));
+ ncp += strlen(apos);
+ cp++;
+ }
+ else if (*cp == '<') {
+ strncpy(ncp, lt, strlen(lt));
+ ncp += strlen(lt);
+ cp++;
+ }
+ else if (*cp == '>') {
+ strncpy(ncp, gt, strlen(gt));
+ ncp += strlen(gt);
+ cp++;
+ }
+ else if (*cp == '&') {
+ strncpy(ncp, amp, strlen(amp));
+ ncp += strlen(amp);
+ cp++;
+ }
+ else {
+ *ncp++ = *cp++;
+ }
+ }
+
+ *ncp = '\0';
+ return rcp;
+}
+
+/**
+ ** XML print functions--these replace some functions in the
+ ** h5tools.c suite.
+ **/
+
+/*-------------------------------------------------------------------------
+ * Function: xml_print_datatype
+ *
+ * Purpose: Print description of a datatype in XML.
+ * Note: this is called inside a <DataType> element.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+xml_print_datatype(hid_t type, unsigned in_group)
+{
+ char *mname;
+ hid_t mtype;
+ unsigned nmembers;
+ unsigned ndims;
+ unsigned i;
+ size_t size;
+ hsize_t dims[H5DUMP_MAX_RANK];
+ H5T_str_t str_pad;
+ H5T_cset_t cset;
+ hid_t super;
+ H5T_order_t ord;
+ H5T_sign_t sgn;
+ size_t sz;
+ size_t spos;
+ size_t epos;
+ size_t esize;
+ size_t mpos;
+ size_t msize;
+ int nmembs;
+ htri_t is_vlstr=FALSE;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ if(!in_group && H5Tcommitted(type) > 0) {
+ H5O_info_t oinfo;
+ obj_t *found_obj; /* Found object */
+
+ /* detect a shared datatype, output only once */
+ H5Oget_info(type, &oinfo);
+ found_obj = search_obj(type_table, oinfo.addr);
+
+ if(found_obj) {
+ /* This should be defined somewhere else */
+ /* These 2 cases are handled the same right now, but
+ probably will have something different eventually */
+ char * dtxid = (char *)malloc(100);
+
+ xml_name_to_XID(found_obj->objname, dtxid, 100, 1);
+ if (!found_obj->recorded) {
+ /* 'anonymous' NDT. Use it's object num.
+ as it's name. */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataTypePtr OBJ-XID=\"/%s\"/>",
+ xmlnsprefix, dtxid);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ /* point to the NDT by name */
+ char *t_objname = xml_escape_the_name(found_obj->objname);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>",
+ xmlnsprefix, dtxid, t_objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_objname);
+ }
+ free(dtxid);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- h5dump error: unknown committed type. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ }
+ else {
+
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ /* <hdf5:IntegerType ByteOrder="bo" Sign="torf" Size="bytes"/> */
+ ord = H5Tget_order(type);
+ sgn = H5Tget_sign(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sIntegerType ByteOrder=\"",xmlnsprefix);
+ switch (ord) {
+ case H5T_ORDER_LE:
+ h5tools_str_append(&buffer, "LE");
+ break;
+ case H5T_ORDER_BE:
+ h5tools_str_append(&buffer, "BE");
+ break;
+ case H5T_ORDER_VAX:
+ default:
+ h5tools_str_append(&buffer, "ERROR_UNKNOWN");
+ }
+
+ h5tools_str_append(&buffer, "\" Sign=\"");
+
+ switch (sgn) {
+ case H5T_SGN_NONE:
+ h5tools_str_append(&buffer, "false");
+ break;
+ case H5T_SGN_2:
+ h5tools_str_append(&buffer, "true");
+ break;
+ default:
+ h5tools_str_append(&buffer, "ERROR_UNKNOWN");
+ }
+
+ h5tools_str_append(&buffer, "\" Size=\"");
+ sz = H5Tget_size(type);
+ h5tools_str_append(&buffer, "%lu", (unsigned long)sz);
+ h5tools_str_append(&buffer, "\" />");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_FLOAT:
+ /* <hdf5:FloatType ByteOrder="bo" Size="bytes"
+ SignBitLocation="bytes"
+ ExponentBits="eb" ExponentLocation="el"
+ MantissaBits="mb" MantissaLocation="ml" /> */
+ ord = H5Tget_order(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sFloatType ByteOrder=\"",xmlnsprefix);
+
+ switch (ord) {
+ case H5T_ORDER_LE:
+ h5tools_str_append(&buffer, "LE");
+ break;
+ case H5T_ORDER_BE:
+ h5tools_str_append(&buffer, "BE");
+ break;
+ case H5T_ORDER_VAX:
+ h5tools_str_append(&buffer, "VAX");
+ break;
+ default:
+ h5tools_str_append(&buffer, "ERROR_UNKNOWN");
+ }
+
+ h5tools_str_append(&buffer, "\" Size=\"");
+ sz = H5Tget_size(type);
+ h5tools_str_append(&buffer, "%lu", (unsigned long)sz);
+ H5Tget_fields(type, &spos, &epos, &esize, &mpos, &msize);
+ h5tools_str_append(&buffer, "\" SignBitLocation=\"%lu\" ", (unsigned long)spos);
+ h5tools_str_append(&buffer, "ExponentBits=\"%lu\" ExponentLocation=\"%lu\" ", (unsigned long)esize, (unsigned long)epos);
+ h5tools_str_append(&buffer, "MantissaBits=\"%lu\" MantissaLocation=\"%lu\" />", (unsigned long)msize, (unsigned long)mpos);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_TIME:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sTimeType />",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ h5tools_str_append(&buffer, "<!-- H5T_TIME: not yet implemented -->");
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_STRING:
+ /* <hdf5:StringType Cset="cs" StrSize="chars" StrPad="pad" /> */
+ size = H5Tget_size(type);
+ str_pad = H5Tget_strpad(type);
+ cset = H5Tget_cset(type);
+ is_vlstr = H5Tis_variable_str(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sStringType Cset=\"",xmlnsprefix);
+ if (cset == H5T_CSET_ASCII) {
+ h5tools_str_append(&buffer, "H5T_CSET_ASCII\" ");
+ }
+ else {
+ h5tools_str_append(&buffer, "unknown_cset\" ");
+ }
+ if(is_vlstr)
+ h5tools_str_append(&buffer, "StrSize=\"H5T_VARIABLE\" StrPad=\"");
+ else
+ h5tools_str_append(&buffer, "StrSize=\"%d\" StrPad=\"", (int) size);
+ if (str_pad == H5T_STR_NULLTERM) {
+ h5tools_str_append(&buffer, "H5T_STR_NULLTERM\"/>");
+ }
+ else if (str_pad == H5T_STR_NULLPAD) {
+ h5tools_str_append(&buffer, "H5T_STR_NULLPAD\"/>");
+ }
+ else if (str_pad == H5T_STR_SPACEPAD) {
+ h5tools_str_append(&buffer, "H5T_STR_SPACEPAD\"/>");
+ }
+ else {
+ h5tools_str_append(&buffer, "H5T_STR_ERROR\"/>");
+ }
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_BITFIELD:
+ /* <hdf5:BitfieldType ByteOrder="bo" Size="bytes"/> */
+ ord = H5Tget_order(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sBitfieldType ByteOrder=\"",xmlnsprefix);
+
+ switch (ord) {
+ case H5T_ORDER_LE:
+ h5tools_str_append(&buffer, "LE");
+ break;
+ case H5T_ORDER_BE:
+ h5tools_str_append(&buffer, "BE");
+ break;
+ case H5T_ORDER_VAX:
+ default:
+ h5tools_str_append(&buffer, "ERROR_UNKNOWN");
+ }
+
+ size = H5Tget_size(type);
+ h5tools_str_append(&buffer, "\" Size=\"%lu\"/>", (unsigned long)size);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_OPAQUE:
+ /* <hdf5:OpaqueType Tag="tag" Size="bytes" /> */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ mname = H5Tget_tag(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sOpaqueType Tag=\"%s\" ",xmlnsprefix, mname);
+ free(mname);
+ size = H5Tget_size(type);
+ h5tools_str_append(&buffer, "Size=\"%lu\"/>", (unsigned long)size);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_COMPOUND:
+ /* recursively describe the components of a compound datatype */
+
+ /* type of a dataset */
+ nmembers = H5Tget_nmembers(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sCompoundType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* List each member Field of the type */
+ /* <hdf5:Field FieldName="name" > */
+ /* <hdf5:DataType > */
+ ctx.indent_level++;
+ dump_indent += COL;
+ for (i = 0; i < nmembers; i++) {
+ char *t_fname;
+
+ mname = H5Tget_member_name(type, i);
+ mtype = H5Tget_member_type(type, i);
+ t_fname = xml_escape_the_name(mname);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sField FieldName=\"%s\">",xmlnsprefix, t_fname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ free(mname);
+ free(t_fname);
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+ xml_print_datatype(mtype,0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sField>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sCompoundType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_REFERENCE:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ /* Only Object references supported at this time */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sReferenceType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sObjectReferenceType />",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sReferenceType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_ENUM:
+ /* <hdf5:EnumType Nelems="ne" > list Name, values of enum */
+ nmembs = H5Tget_nmembers(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sEnumType Nelems=\"%d\">",xmlnsprefix, nmembs);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ xml_print_enum(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sEnumType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAtomicType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_VLEN:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sVLType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ super = H5Tget_super(type);
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent += COL;
+ ctx.indent_level++;
+ xml_print_datatype(super,0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sVLType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ H5Tclose(super);
+
+ break;
+
+ case H5T_ARRAY:
+ /* Get array base type */
+ super = H5Tget_super(type);
+
+ /* Print lead-in */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sArrayType Ndims=\"",xmlnsprefix);
+ ndims = H5Tget_array_ndims(type);
+ h5tools_str_append(&buffer, "%u\">", ndims);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* Get array information */
+ H5Tget_array_dims2(type, dims);
+
+ /* list of dimensions */
+ ctx.indent_level++;
+ for (i = 0; i < ndims; i++) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sArrayDimension DimSize=\"%u\"/>", xmlnsprefix, (int) dims[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ ctx.indent_level--;
+
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent += COL;
+ ctx.indent_level++;
+ xml_print_datatype(super,0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_indent -= COL;
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sArrayType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ /* Close array base type */
+ H5Tclose(super);
+ break;
+
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- unknown datatype -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ h5tools_setstatus(EXIT_FAILURE);
+ break;
+ }
+ } /* end else */
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_datatype
+ *
+ * Purpose: Dump description of a datatype in XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_datatype(hid_t type)
+{
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if(H5Tcommitted(type) > 0) {
+ H5O_info_t oinfo;
+ obj_t *found_obj; /* Found object */
+
+ /* Datatype is a shared or named datatype */
+ H5Oget_info(type, &oinfo);
+ found_obj = search_obj(type_table, oinfo.addr);
+
+ if(found_obj) {
+ /* Shared datatype, must be entered as an object */
+ /* These 2 cases are the same now, but may change */
+ char *dtxid = (char *)malloc(100);
+
+ xml_name_to_XID(found_obj->objname, dtxid, 100, 1);
+ if (!found_obj->recorded) {
+ /* anonymous stored datatype:
+ following the dumper's current
+ practice:
+ use it's object ref as its name
+ */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataTypePtr OBJ-XID=\"%s\"/>",
+ xmlnsprefix, dtxid);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ /* pointer to a named datatype already in XML */
+ char *t_objname = xml_escape_the_name(found_obj->objname);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\" />",
+ xmlnsprefix, dtxid, t_objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_objname);
+ }
+ free(dtxid);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- h5dump error: unknown committed type. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+ xml_print_datatype(type, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_dataspace
+ *
+ * Purpose: Dump description of a dataspace in XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_dataspace(hid_t space)
+{
+ hsize_t size[H5DUMP_MAX_RANK];
+ hsize_t maxsize[H5DUMP_MAX_RANK];
+ int i;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
+ H5S_class_t space_type = H5Sget_simple_extent_type(space);
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataspace>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ switch (space_type) {
+ case H5S_SCALAR:
+ /* scalar dataspace (just a tag, no XML attrs. defined */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sScalarDataspace />",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5S_SIMPLE:
+ /* simple dataspace */
+ /* <hdf5:SimpleDataspace Ndims="nd"> */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sSimpleDataspace Ndims=\"%d\">",xmlnsprefix, ndims);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* print the <hdf5:Dimension> elements */
+ ctx.indent_level++;
+ for (i = 0; i < ndims; i++) {
+ if (maxsize[i] == H5S_UNLIMITED) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDimension DimSize=\"%lu\" MaxDimSize=\"UNLIMITED\"/>",
+ xmlnsprefix,size[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else if (maxsize[i] == (hsize_t) 0) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDimension DimSize=\"%lu\" MaxDimSize=\"%lu\"/>",
+ xmlnsprefix,size[i], size[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDimension DimSize=\"%lu\" MaxDimSize=\"%lu\"/>",
+ xmlnsprefix, size[i], maxsize[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ }
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sSimpleDataspace>", xmlnsprefix );
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+#ifdef TMP
+ /* Commented out: wait until the schema is updated first */
+ case H5S_NULL:
+ /* null dataspace (just a tag, no XML attrs. defined */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNullDataspace />",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+#endif /* TMP */
+
+ case H5S_NO_CLASS:
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- unknown dataspace -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataspace>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_data
+ *
+ * Purpose: Dump description of data in XML.
+ * Note that this calls the h5dump_xxx calls in
+ * the h5tools library.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNUSED pindex)
+{
+ hid_t space = -1;
+ hid_t type = -1;
+ hid_t p_type = -1;
+ hsize_t size[64];
+ hsize_t nelmts = 1;
+ int ndims;
+ int i;
+ int depth;
+ int status = -1;
+ int stdindent = COL; /* should be 3 */
+ void *buf = NULL;
+ hsize_t curr_pos = 0; /* total data element position */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+
+ HDmemset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ /* Print all the values. */
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+ string_dataformat.cmpd_sep = " ";
+ string_dataformat.cmpd_pre = "";
+ string_dataformat.cmpd_suf = "";
+ string_dataformat.cmpd_end = "";
+ string_dataformat.arr_linebreak = 0;
+ string_dataformat.arr_pre = "";
+ outputformat = &string_dataformat;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ dump_indent += COL;
+ ctx.indent_level++;
+
+ if (obj_data == DATASET_DATA) {
+ type = H5Dget_type(obj_id);
+ if (H5Tget_class(type) == H5T_REFERENCE) {
+ status = xml_print_refs(obj_id, DATASET_DATA);
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
+ status = xml_print_strs(obj_id, DATASET_DATA);
+ }
+ else {
+ h5tools_context_t datactx;
+ memset(&datactx, 0, sizeof(datactx));
+ datactx.need_prefix = TRUE;
+ datactx.indent_level = ctx.indent_level;
+ datactx.cur_column = ctx.cur_column;
+ status = h5tools_dump_dset(stdout, outputformat, &datactx, obj_id, -1, NULL);
+ }
+ }
+ else {
+ /* Attribute data */
+ type = H5Aget_type(obj_id);
+
+ if (H5Tget_class(type) == H5T_REFERENCE) {
+ /* references are done differently than
+ the standard output:
+ XML dumps a path to the object
+ referenced.
+ */
+ status = xml_print_refs(obj_id, ATTRIBUTE_DATA);
+ H5Tclose(type);
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
+ status = xml_print_strs(obj_id, ATTRIBUTE_DATA);
+ }
+ else { /* all other data */
+ /* VL data special information */
+ unsigned int vl_data = 0; /* contains VL datatypes */
+
+ p_type = h5tools_get_native_type(type);
+
+ /* Check if we have VL data in the dataset's datatype */
+ if (h5tools_detect_vlen_str(p_type) == TRUE)
+ vl_data = TRUE;
+ if (H5Tdetect_class(p_type, H5T_VLEN) == TRUE)
+ vl_data = TRUE;
+
+ H5Tclose(type);
+
+ space = H5Aget_space(obj_id);
+
+ ndims = H5Sget_simple_extent_dims(space, size, NULL);
+
+ for (i = 0; i < ndims; i++)
+ nelmts *= size[i];
+
+ buf = malloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type))));
+ assert(buf);
+
+ if (H5Aread(obj_id, p_type, buf) >= 0) {
+ h5tools_context_t datactx;
+ memset(&datactx, 0, sizeof(datactx));
+ datactx.need_prefix = TRUE;
+ datactx.indent_level = ctx.indent_level;
+ datactx.cur_column = ctx.cur_column;
+ status = h5tools_dump_mem(stdout, outputformat, &datactx, obj_id, p_type, space, buf);
+ }
+ /* Reclaim any VL memory, if necessary */
+ if (vl_data)
+ H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf);
+
+ free(buf);
+ H5Tclose(p_type);
+ H5Sclose(space);
+ H5Tclose(type);
+ }
+ }
+
+ if (status == FAIL) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "Unable to print data.");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ status = 1;
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_attr
+ *
+ * Purpose: Dump a description of an HDF5 attribute in XML.
+ *
+ * Return: herr_t
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+herr_t
+xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t UNUSED *info,
+ void UNUSED * op_data)
+{
+ hid_t attr_id = -1;
+ hid_t type = -1;
+ hid_t space = -1;
+ H5S_class_t space_type;
+ hsize_t curr_pos = 0; /* total data element position */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+
+ char *t_aname = xml_escape_the_name(attr_name);
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sAttribute Name=\"%s\">", xmlnsprefix, t_aname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_aname);
+
+ if ((attr_id = H5Aopen(attr, attr_name, H5P_DEFAULT)) >= 0) {
+ type = H5Aget_type(attr_id);
+ space = H5Aget_space(attr_id);
+ space_type = H5Sget_simple_extent_type(space);
+
+ dump_function_table->dump_dataspace_function(space);
+ dump_function_table->dump_datatype_function(type);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if (display_attr_data && space_type != H5S_NULL) {
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ case H5T_ENUM:
+ case H5T_ARRAY:
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
+
+ case H5T_TIME:
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Time data not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<hdf5:Data>");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+ break;
+
+ case H5T_COMPOUND:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: format of compound data not specified -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
+
+ case H5T_REFERENCE:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: Region references not supported -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ xml_print_refs(attr_id, ATTRIBUTE_DATA);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_VLEN:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: format of VL data not specified -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Unknown datatype: %d -->", H5Tget_class(type));
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ }
+ }
+ else {
+ /* The case of an attribute never yet written ??
+ * Or dataspace is H5S_NULL. */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ H5Tclose(type);
+ H5Sclose(space);
+ H5Aclose(attr_id);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAttribute>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+ return SUCCEED;
+ }
+ else {
+ /* ?? failed */
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- h5dump error: unable to open attribute. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sAttribute>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+
+ h5tools_setstatus(EXIT_FAILURE);
+ return FAIL;
+ }
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_named_datatype
+ *
+ * Purpose: Dump a description of an HDF5 NDT in XML.
+ *
+ * Return: herr_t
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_named_datatype(hid_t type, const char *name)
+{
+ hsize_t curr_pos = 0; /* total data element position */
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ char *tmp;
+ char *dtxid;
+ char *parentxid;
+ char *t_tmp;
+ char *t_prefix;
+ char *t_name;
+
+ tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
+ HDstrcat(tmp, "/");
+ HDstrcat(tmp, name);
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ dtxid = (char *)HDmalloc(100);
+ parentxid = (char *)HDmalloc(100);
+ t_tmp = xml_escape_the_name(tmp);
+ t_prefix = xml_escape_the_name(prefix);
+ t_name = xml_escape_the_name(name);
+
+ xml_name_to_XID(tmp, dtxid, 100, 1);
+ xml_name_to_XID(prefix, parentxid, 100, 1);
+ if(HDstrncmp(name, "#", 1) == 0) {
+ /* Special: this is an 'anonymous' NDT, deleted but
+ still in use.
+ We follow the dumper's undocumented practice, and
+ use its object id as its name.
+ Exactly the same as normal, but a separate case
+ in the event we want to do something else in
+ the future.
+ */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\">",
+ xmlnsprefix,
+ name, dtxid,
+ parentxid, HDstrcmp(prefix,"") ? t_prefix : "/");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ H5O_info_t oinfo; /* Object info */
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
+ "H5Path=\"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">",
+ xmlnsprefix,
+ t_name, dtxid,
+ t_tmp, parentxid, (HDstrcmp(prefix, "") ? t_prefix : "/"));
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /* Check uniqueness of named datatype */
+ H5Oget_info(type, &oinfo);
+ if(oinfo.rc > 1) {
+ obj_t *found_obj; /* Found object */
+
+ /* Group with more than one link to it... */
+ found_obj = search_obj(type_table, oinfo.addr);
+
+ if (found_obj == NULL) {
+ indentation(dump_indent);
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ else if(found_obj->displayed) {
+ /* We have already printed this named datatype, print it as a
+ * NamedDatatypePtr
+ */
+ char pointerxid[100];
+ char *t_objname = xml_escape_the_name(found_obj->objname);
+
+ ctx.indent_level++;
+
+ xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNamedDatatypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>", xmlnsprefix, pointerxid, t_objname);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sNamedDataType>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ HDfree(t_objname);
+ goto done;
+ }
+ else
+ found_obj->displayed = TRUE;
+ }
+ }
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+ xml_print_datatype(type,1);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sNamedDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+done:
+
+ h5tools_str_close(&buffer);
+
+ HDfree(dtxid);
+ HDfree(parentxid);
+ HDfree(t_tmp);
+ HDfree(t_prefix);
+ HDfree(t_name);
+ HDfree(tmp);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_group
+ *
+ * Purpose: Dump a description of an HDF5 Group (and its members) in XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ * Pedro Vicente, October 9, 2007
+ * added parameters to H5A(L)iterate to allow for other iteration orders
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_group(hid_t gid, const char *name)
+{
+ H5O_info_t oinfo;
+ hid_t gcpl_id;
+ hid_t dset, type;
+ unsigned crt_order_flags;
+ unsigned attr_crt_order_flags;
+ int isRoot = 0;
+ char type_name[1024];
+ char *t_objname = NULL;
+ char *par_name = NULL;
+ char *cp = NULL;
+ char *tmp = NULL;
+ char *par = NULL;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
+ error_msg("error in getting group creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* query the group creation properties for attributes */
+ if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0) {
+ error_msg("error in getting group creation properties\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* query the group creation properties */
+ if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0) {
+ error_msg("error in getting group creation properties\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ if(H5Pclose(gcpl_id) < 0) {
+ error_msg("error in closing group creation property list ID\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ if(HDstrcmp(name, "/") == 0) {
+ isRoot = 1;
+ tmp = HDstrdup("/");
+ }
+ else {
+ tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
+ par = HDstrdup(tmp);
+ cp = HDstrrchr(par, '/');
+ if(cp) {
+ if((cp == par) && HDstrlen(par) > 1)
+ *(cp + 1) = '\0';
+ else
+ *cp = '\0';
+ }
+ }
+
+ H5Oget_info(gid, &oinfo);
+
+ if(oinfo.rc > 1) {
+ obj_t *found_obj; /* Found object */
+
+ /* Group with more than one link to it... */
+ found_obj = search_obj(group_table, oinfo.addr);
+
+ if (found_obj == NULL) {
+ indentation(dump_indent);
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ else {
+ char *t_name = xml_escape_the_name(name);
+ char *grpxid = (char *)malloc(100);
+ char *parentxid = (char *)malloc(100);
+
+ if(found_obj->displayed) {
+ char *ptrstr = (char *)malloc(100);
+
+ /* already seen: enter a groupptr */
+ if(isRoot) {
+ /* probably can't happen! */
+ xml_name_to_XID("/", grpxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">",
+ xmlnsprefix, grpxid, "/");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ t_objname = xml_escape_the_name(found_obj->objname);
+ par_name = xml_escape_the_name(par);
+ xml_name_to_XID(tmp, grpxid, 100, 1);
+ xml_name_to_XID(par, parentxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sGroup Name=\"%s\" OBJ-XID=\"%s-%d\" H5Path=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\">",
+ xmlnsprefix,t_name, grpxid, get_next_xid(),
+ t_objname, parentxid, par_name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_objname);
+ free(par_name);
+
+ ctx.indent_level++;
+
+ t_objname = xml_escape_the_name(found_obj->objname);/* point to the NDT by name */
+ par_name = xml_escape_the_name(par);
+ xml_name_to_XID(found_obj->objname, ptrstr, 100, 1);
+ xml_name_to_XID(par, parentxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sGroupPtr OBJ-XID=\"%s\" H5Path=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />",
+ xmlnsprefix,
+ ptrstr, t_objname, parentxid, par_name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+
+ free(t_objname);
+ free(par_name);
+ }
+ free(ptrstr);
+ }
+ else {
+
+ /* first time this group has been seen -- describe it */
+ if(isRoot) {
+ xml_name_to_XID("/", grpxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">",
+ xmlnsprefix, grpxid, "/");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ char *t_tmp = xml_escape_the_name(tmp);
+
+ par_name = xml_escape_the_name(par);
+ xml_name_to_XID(tmp, grpxid, 100, 1);
+ xml_name_to_XID(par, parentxid, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" >",
+ xmlnsprefix,t_name, grpxid, t_tmp, parentxid, par_name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ free(t_tmp);
+ free(par_name);
+ }
+ found_obj->displayed = TRUE;
+
+ /* 1. do all the attributes of the group */
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ if(isRoot && unamedtype) {
+ unsigned u;
+
+ /* Very special case: dump unamed type in root group */
+ for(u = 0; u < type_table->nobjs; u++) {
+ if(!type_table->objs[u].recorded) {
+ dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
+ type = H5Dget_type(dset);
+ sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
+ dump_function_table->dump_named_datatype_function(type, type_name);
+ H5Tclose(type);
+ H5Dclose(dset);
+ }
+ }
+ }
+
+ /* iterate through all the links */
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
+ H5Literate(gid, sort_by, sort_order, NULL, xml_dump_all_cb, NULL);
+ else
+ H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, xml_dump_all_cb, NULL);
+
+ dump_indent -= COL;
+ ctx.indent_level--;
+ }
+ free(t_name);
+ free(grpxid);
+ free(parentxid);
+ }
+ }
+ else {
+ /* only link -- must be first time! */
+ char *t_name = xml_escape_the_name(name);
+ char *grpxid = (char *)malloc(100);
+ char *parentxid = (char *)malloc(100);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+
+ if(isRoot) {
+ xml_name_to_XID("/", grpxid, 100, 1);
+ h5tools_str_append(&buffer, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">", xmlnsprefix, grpxid, "/");
+ }
+ else {
+ char *t_tmp = xml_escape_the_name(tmp);
+
+ par_name = xml_escape_the_name(par);
+ xml_name_to_XID(tmp, grpxid, 100, 1);
+ xml_name_to_XID(par, parentxid, 100, 1);
+ h5tools_str_append(&buffer, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" >",
+ xmlnsprefix, t_name, grpxid, t_tmp, parentxid, par_name);
+ free(t_tmp);
+ free(par_name);
+ }
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ free(t_name);
+ free(grpxid);
+ free(parentxid);
+
+ /* 1. do all the attributes of the group */
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if(H5Aiterate2(gid, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ if(isRoot && unamedtype) {
+ unsigned u;
+
+ /* Very special case: dump unamed type in root group */
+ for(u = 0; u < type_table->nobjs; u++) {
+ if(!type_table->objs[u].recorded) {
+ dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
+ type = H5Dget_type(dset);
+ sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
+ dump_function_table->dump_named_datatype_function(type, type_name);
+ H5Tclose(type);
+ H5Dclose(dset);
+ }
+ }
+ }
+
+ /* iterate through all the links */
+
+ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
+ H5Literate(gid, sort_by, sort_order, NULL, xml_dump_all_cb, NULL);
+ else
+ H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, xml_dump_all_cb, NULL);
+
+ dump_indent -= COL;
+ ctx.indent_level--;
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if(isRoot)
+ h5tools_str_append(&buffer, "</%sRootGroup>", xmlnsprefix);
+ else
+ h5tools_str_append(&buffer, "</%sGroup>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+
+ if(par)
+ free(par);
+ if(tmp)
+ free(tmp);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_print_refs
+ *
+ * Purpose: Print a path to the objects referenced by HDF5 Referneces.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+xml_print_refs(hid_t did, int source)
+{
+ herr_t e;
+ hid_t type;
+ hid_t space;
+ hssize_t ssiz;
+ hsize_t i;
+ size_t tsiz;
+ hobj_ref_t *refbuf = NULL;
+ char *buf = NULL;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ if (source == DATASET_DATA) {
+ type = H5Dget_type(did);
+ }
+ else if (source == ATTRIBUTE_DATA) {
+ type = H5Aget_type(did);
+ }
+ else {
+ /* return an error */
+ return FAIL;
+ }
+ if (H5Tget_class(type) != H5T_REFERENCE) {
+ /* return an error */
+ goto error;
+ }
+ if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
+ /* region ref not supported yet... */
+ /* return an error */
+ goto error;
+ }
+ if (source == DATASET_DATA) {
+ space = H5Dget_space(did);
+ if ((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
+ goto error;
+ if ((tsiz = H5Tget_size(type)) == 0)
+ goto error;
+
+ buf = (char *) calloc((size_t)(ssiz * tsiz), sizeof(char));
+ if (buf == NULL)
+ goto error;
+ e = H5Dread(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+ /* need to check result here */
+ if (e < 0) {
+ goto error;
+ }
+ }
+ else if (source == ATTRIBUTE_DATA) {
+ space = H5Aget_space(did);
+ if ((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
+ goto error;
+ if ((tsiz = H5Tget_size(type)) == 0)
+ goto error;
+
+ buf = (char *) calloc((size_t)(ssiz * tsiz), sizeof(char));
+ if (buf == NULL) {
+ goto error;
+ }
+ e = H5Aread(did, H5T_STD_REF_OBJ, buf);
+ /* need to check the result here */
+ if (e < 0) {
+ goto error;
+ }
+ }
+
+ refbuf = (hobj_ref_t *) buf;
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ for (i = 0; i < ssiz; i++) {
+ const char *path = lookup_ref_path(*refbuf);
+ ctx.indent_level++;
+
+ if (!path) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", "NULL");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ char *t_path = xml_escape_the_string(path, -1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", t_path);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_path);
+ }
+ ctx.indent_level--;
+
+ refbuf++;
+ }
+
+ h5tools_str_close(&buffer);
+
+ free(buf);
+ H5Tclose(type);
+ H5Sclose(space);
+ return SUCCEED;
+
+error:
+ if(buf)
+ free(buf);
+
+ H5E_BEGIN_TRY {
+ H5Tclose(type);
+ H5Sclose(space);
+ } H5E_END_TRY;
+ return FAIL;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_print_strs
+ *
+ * Purpose: Print strings.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+xml_print_strs(hid_t did, int source)
+{
+ herr_t e;
+ hid_t type;
+ hid_t space;
+ hssize_t ssiz;
+ htri_t is_vlstr = FALSE;
+ size_t tsiz;
+ size_t i;
+ size_t str_size = 0;
+ char *bp = NULL;
+ char *onestring = NULL;
+ void *buf = NULL;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ if (source == DATASET_DATA) {
+ type = H5Dget_type(did);
+ }
+ else if (source == ATTRIBUTE_DATA) {
+ type = H5Aget_type(did);
+ }
+ else {
+ /* return an error */
+ return FAIL;
+ }
+ if (H5Tget_class(type) != H5T_STRING) {
+ /* return an error */
+ goto error;
+ }
+ /* Check if we have VL data in the dataset's datatype */
+ is_vlstr = H5Tis_variable_str(type);
+
+ if (source == DATASET_DATA) {
+ space = H5Dget_space(did);
+ if((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
+ goto error;
+ if((tsiz = H5Tget_size(type)) == 0)
+ goto error;
+
+ buf = malloc((size_t)(ssiz * tsiz));
+ if (buf == NULL)
+ goto error;
+
+ e = H5Dread(did, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+ if (e < 0) {
+ goto error;
+ }
+ }
+ else if (source == ATTRIBUTE_DATA) {
+ space = H5Aget_space(did);
+ if((ssiz = H5Sget_simple_extent_npoints(space)) < 0)
+ goto error;
+ if((tsiz = H5Tget_size(type)) == 0)
+ goto error;
+
+ buf = malloc((size_t)(ssiz * tsiz));
+ if (buf == NULL)
+ goto error;
+
+ e = H5Aread(did, type, buf);
+ if (e < 0) {
+ goto error;
+ }
+ }
+
+ bp = (char*) buf;
+ if (!is_vlstr)
+ onestring = (char *) calloc(tsiz, sizeof(char));
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ for (i = 0; i < ssiz; i++) {
+ if (is_vlstr) {
+ onestring = *(char **) bp;
+ if (onestring)
+ str_size = (size_t) HDstrlen(onestring);
+ }
+ else {
+ HDstrncpy(onestring, bp, tsiz);
+ str_size = tsiz;
+ }
+
+ if (!onestring) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "NULL");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ char *t_onestring = xml_escape_the_string(onestring, (int) str_size);
+ if (t_onestring) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", t_onestring);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_onestring);
+ }
+ }
+ bp += tsiz;
+ }
+
+ h5tools_str_close(&buffer);
+
+ /* Reclaim any VL memory, if necessary */
+ if (!is_vlstr)
+ if (onestring)
+ free(onestring);
+ if (buf) {
+ if (is_vlstr)
+ H5Dvlen_reclaim(type, space, H5P_DEFAULT, buf);
+ free(buf);
+ }
+ H5Tclose(type);
+ H5Sclose(space);
+ return SUCCEED;
+
+error:
+ if(buf)
+ free(buf);
+
+ H5E_BEGIN_TRY {
+ H5Tclose(type);
+ H5Sclose(space);
+ } H5E_END_TRY;
+ return FAIL;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: check_filters
+ *
+ * Purpose: private function to check for the filters and
+ * put tags in the XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+check_filters(hid_t dcpl)
+{
+ int nfilt;
+ int i;
+ H5Z_filter_t filter;
+ char namebuf[120];
+ size_t cd_nelmts = 20;
+ unsigned int cd_values[20];
+ unsigned int flags;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ nfilt = H5Pget_nfilters(dcpl);
+ if (nfilt <= 0)
+ return;
+ for (i = 0; i < nfilt; i++) {
+ filter = H5Pget_filter2(dcpl, (unsigned) i, &flags, (size_t *) &cd_nelmts, cd_values, 120, namebuf, NULL);
+ if (filter == H5Z_FILTER_DEFLATE) {
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDeflate Level=\"", xmlnsprefix);
+ if (cd_nelmts < 1) {
+ /* not sure what this means? */
+ h5tools_str_append(&buffer, "6");
+ }
+ else {
+ h5tools_str_append(&buffer, "%d", cd_values[0]);
+ }
+ h5tools_str_append(&buffer, "\"/>");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else if (filter == H5Z_FILTER_FLETCHER32) {
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sFletcher32 />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else if (filter == H5Z_FILTER_SHUFFLE) {
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sShuffle />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else if (filter == H5Z_FILTER_SZIP) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sSZIP ", xmlnsprefix);
+ if (cd_nelmts < 2) {
+ /* no pixels ? */
+ h5tools_str_append(&buffer, "Pixels_per_block=\"-1\" ");
+ }
+ else {
+ h5tools_str_append(&buffer, "Pixels_per_block=\"%d\" ", cd_values[1]);
+ }
+ /* analyse the options mask */
+ if (cd_values[0] & H5_SZIP_CHIP_OPTION_MASK) {
+ h5tools_str_append(&buffer, "Mode =\"Hardware\" ");
+ }
+ else if (cd_values[0] & H5_SZIP_ALLOW_K13_OPTION_MASK) {
+ h5tools_str_append(&buffer, "Mode =\"K13\" ");
+ }
+ h5tools_str_append(&buffer, "Coding=\"");
+ if (cd_values[0] & H5_SZIP_EC_OPTION_MASK) {
+ h5tools_str_append(&buffer, "Entropy");
+ }
+ else if (cd_values[0] & H5_SZIP_NN_OPTION_MASK) {
+ h5tools_str_append(&buffer, "NN");
+ }
+ h5tools_str_append(&buffer, "\" ");
+
+ h5tools_str_append(&buffer, "ByteOrder=\"");
+ if (cd_values[0] & H5_SZIP_LSB_OPTION_MASK) {
+ h5tools_str_append(&buffer, "LSB");
+ }
+ else if (cd_values[0] & H5_SZIP_MSB_OPTION_MASK) {
+ h5tools_str_append(&buffer, "MSB");
+ }
+ h5tools_str_append(&buffer, "\" ");
+
+ if (cd_values[0] & H5_SZIP_RAW_OPTION_MASK) {
+ h5tools_str_append(&buffer, "Header=\"Raw\"");
+ }
+ h5tools_str_append(&buffer, "/>");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else {
+ /* unknown option */
+ }
+ }
+
+ h5tools_str_close(&buffer);
+}
+
+static void
+xml_dump_fill_value(hid_t dcpl, hid_t type)
+{
+ size_t sz;
+ size_t i;
+ hsize_t space;
+ void *buf;
+ char *name;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ space = H5Tget_size(type);
+ buf = malloc((size_t) space);
+
+ H5Pget_fill_value(dcpl, type, buf);
+
+ if (H5Tget_class(type) == H5T_REFERENCE) {
+ const char * path = lookup_ref_path(*(hobj_ref_t *) buf);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ if (!path) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", "NULL");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ char *t_path = xml_escape_the_string(path, -1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", t_path);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_path);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
+ /* ????? */
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- String fill values not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ /* all other data */
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%d\"", *(int *) buf);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_FLOAT:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%f\"", *(float *) buf);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ sz = H5Tget_size(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"");
+ for (i = 0; i < sz; i++) {
+ h5tools_str_append(&buffer, "%x ", *(unsigned int *) buf);
+ buf = (char *) buf + sizeof(unsigned int);
+ }
+ h5tools_str_append(&buffer, "\"");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_ENUM:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ name = H5Tget_member_name(type, *(unsigned *) buf);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "\"%s\"", name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_ARRAY:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Array fill values not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_TIME:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Time fill not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_COMPOUND:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Compound fill not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ case H5T_VLEN:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- VL fill not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Unknown fill datatype: %d -->", H5Tget_class(type));
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ }
+ }
+ free(buf);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_dump_dataset
+ *
+ * Purpose: Dump a description of an HDF5 dataset in XML.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ * Pedro Vicente, October 9, 2007
+ * added parameters to H5Aiterate2 to allow for other iteration orders
+ *
+ *-------------------------------------------------------------------------
+ */
+void
+xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
+{
+ hid_t type;
+ hid_t space;
+ hid_t dcpl;
+ H5D_fill_value_t fvstatus;
+ int maxdims;
+ hsize_t *chsize;
+ int ndims;
+ int i;
+ H5D_alloc_time_t at;
+ H5D_fill_time_t ft;
+ hsize_t tempi;
+ char *tmp;
+ char *t_name;
+ char *t_tmp;
+ char *t_prefix;
+ unsigned attr_crt_order_flags;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ char *rstr = (char*) HDmalloc(100);
+ char *pstr = (char*) HDmalloc(100);
+
+ tmp = (char*) HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ HDstrcpy(tmp, prefix);
+ HDstrcat(tmp, "/");
+ HDstrcat(tmp, name);
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ t_name = xml_escape_the_name(name);
+ t_tmp = xml_escape_the_name(tmp);
+ t_prefix = xml_escape_the_name(prefix);
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ xml_name_to_XID(tmp, rstr, 100, 1);
+ xml_name_to_XID(prefix, pstr, 100, 1);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataset Name=\"%s\" OBJ-XID=\"%s\" H5Path= \"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">",
+ xmlnsprefix, t_name, rstr, t_tmp, pstr,
+ strcmp(prefix, "") ? t_prefix : "/");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ HDfree(t_name);
+ HDfree(t_tmp);
+ HDfree(t_prefix);
+ HDfree(rstr);
+ HDfree(pstr);
+ HDfree(tmp);
+
+ dcpl = H5Dget_create_plist(did);
+ type = H5Dget_type(did);
+ space = H5Dget_space(did);
+
+ /* query the creation properties for attributes */
+ H5Pget_attr_creation_order(dcpl, &attr_crt_order_flags);
+
+ /* Print information about storage layout */
+ if (H5D_CHUNKED == H5Pget_layout(dcpl)) {
+ maxdims = H5Sget_simple_extent_ndims(space);
+ chsize = (hsize_t *) malloc(maxdims * sizeof(hsize_t));
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sChunkedLayout ", xmlnsprefix);
+ ndims = H5Pget_chunk(dcpl, maxdims, chsize);
+ h5tools_str_append(&buffer, "Ndims=\"%d\">", ndims);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ for (i = 0; i < ndims; i++) {
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sChunkDimension DimSize=\"%lu\" />", xmlnsprefix, chsize[i]);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sRequiredFilter>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+ check_filters(dcpl);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sRequiredFilter>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sChunkedLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+ free(chsize);
+ }
+ else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl)) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sContiguousLayout/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else if (H5D_COMPACT == H5Pget_layout(dcpl)) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sCompactLayout/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sStorageLayout>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ /* and check for external.... ?? */
+
+ /* fill value */
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sFillValueInfo ", xmlnsprefix);
+ H5Pget_fill_time(dcpl, &ft);
+ h5tools_str_append(&buffer, "FillTime=\"");
+ switch (ft) {
+ case H5D_FILL_TIME_ALLOC:
+ h5tools_str_append(&buffer, "FillOnAlloc");
+ break;
+ case H5D_FILL_TIME_NEVER:
+ h5tools_str_append(&buffer, "FillNever");
+ break;
+ case H5D_FILL_TIME_IFSET:
+ h5tools_str_append(&buffer, "FillIfSet");
+ break;
+ default:
+ h5tools_str_append(&buffer, "?");
+ break;
+ }
+ h5tools_str_append(&buffer, "\" ");
+ H5Pget_alloc_time(dcpl, &at);
+ h5tools_str_append(&buffer, "AllocationTime=\"");
+ switch (at) {
+ case H5D_ALLOC_TIME_EARLY:
+ h5tools_str_append(&buffer, "Early");
+ break;
+ case H5D_ALLOC_TIME_INCR:
+ h5tools_str_append(&buffer, "Incremental");
+ break;
+ case H5D_ALLOC_TIME_LATE:
+ h5tools_str_append(&buffer, "Late");
+ break;
+ case H5D_ALLOC_TIME_DEFAULT:
+ default:
+ h5tools_str_append(&buffer, "?");
+ break;
+ }
+ h5tools_str_append(&buffer, "\"");
+ h5tools_str_append(&buffer, ">");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sFillValue>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ H5Pfill_value_defined(dcpl, &fvstatus);
+ if (fvstatus == H5D_FILL_VALUE_UNDEFINED || (fvstatus == H5D_FILL_VALUE_DEFAULT && ft == H5D_FILL_TIME_IFSET)) {
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoFill/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+ else {
+ xml_dump_fill_value(dcpl, type);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sFillValue>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sFillValueInfo>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ dump_function_table->dump_dataspace_function(space);
+ dump_function_table->dump_datatype_function(type);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ if ((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if (H5Aiterate2(did, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end if */
+ else {
+ if (H5Aiterate2(did, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ error_msg("error getting attribute information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end if */
+ } /* end else */
+
+ ctx.indent_level--;
+ dump_indent -= COL;
+ tempi = H5Dget_storage_size(did);
+
+ if (display_data && (tempi > 0)) {
+ switch (H5Tget_class(type)) {
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ case H5T_ENUM:
+ case H5T_ARRAY:
+ ctx.indent_level++;
+ dump_indent += COL;
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+ break;
+
+ case H5T_TIME:
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Time data not yet implemented. -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level--;
+ break;
+
+ case H5T_COMPOUND:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: format of compound data not specified -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.indent_level++;
+ dump_indent += COL;
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+ break;
+
+ case H5T_REFERENCE:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: Region references not supported -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ else {
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ xml_print_refs(did, DATASET_DATA);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataFromFile>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+
+ case H5T_VLEN:
+ ctx.indent_level--;
+ dump_indent -= COL;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Note: format of VL data not specified -->");
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ dump_indent += COL;
+
+ ctx.indent_level++;
+ dump_indent += COL;
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ ctx.indent_level--;
+ dump_indent -= COL;
+ break;
+ default:
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<!-- Unknown datatype: %d -->", H5Tget_class(type));
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ break;
+ }
+ }
+ else {
+ /* no data written */
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sNoData/>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sData>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+ }
+
+ H5Tclose(type);
+ H5Sclose(space);
+ H5Pclose(dcpl);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataset>", xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ h5tools_str_close(&buffer);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: xml_print_enum
+ *
+ * Purpose: Print the values of an HDF5 ENUM in XML.
+ * Very similar to regular DDL output.
+ *
+ * Return: void
+ *
+ * Programmer: REMcG
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+xml_print_enum(hid_t type)
+{
+ char **name = NULL; /*member names */
+ unsigned char *value = NULL; /*value array */
+ unsigned nmembs; /*number of members */
+ hid_t super; /*enum base integer type */
+ hid_t native = -1; /*native integer datatype */
+ size_t dst_size; /*destination value type size */
+ unsigned i; /*miscellaneous counters */
+ size_t j;
+ h5tools_str_t buffer; /* string into which to render */
+ h5tools_context_t ctx; /* print context */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ h5tool_format_t string_dataformat;
+ hsize_t curr_pos = 0; /* total data element position */
+
+ /* setup */
+ HDmemset(&buffer, 0, sizeof(h5tools_str_t));
+
+ memset(&ctx, 0, sizeof(ctx));
+ ctx.indent_level = dump_indent/COL;
+ ctx.cur_column = dump_indent;
+
+ string_dataformat = *outputformat;
+
+ if (fp_format) {
+ string_dataformat.fmt_double = fp_format;
+ string_dataformat.fmt_float = fp_format;
+ }
+
+ if (h5tools_nCols==0) {
+ string_dataformat.line_ncols = 65535;
+ string_dataformat.line_per_line = 1;
+ }
+ else
+ string_dataformat.line_ncols = h5tools_nCols;
+
+ string_dataformat.do_escape = display_escape;
+ outputformat = &string_dataformat;
+
+ nmembs = (unsigned)H5Tget_nmembers(type);
+ super = H5Tget_super(type);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ xml_print_datatype(super,0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sDataType>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ /*
+ * Determine what datatype to use for the native values. To simplify
+ * things we entertain three possibilities:
+ * 1. long long -- the largest native signed integer
+ * 2. unsigned long long -- the largest native unsigned integer
+ * 3. raw format
+ */
+ if (H5Tget_size(type) <= sizeof(long long)) {
+ dst_size = sizeof(long long);
+
+ if (H5T_SGN_NONE == H5Tget_sign(type)) {
+ native = H5T_NATIVE_ULLONG;
+ }
+ else {
+ native = H5T_NATIVE_LLONG;
+ }
+ }
+ else {
+ dst_size = H5Tget_size(type);
+ }
+
+ /* Get the names and raw values of all members */
+ name = (char **)calloc(nmembs, sizeof(char *));
+ value = (unsigned char *)calloc(nmembs, MAX(H5Tget_size(type), dst_size));
+
+ for (i = 0; i < nmembs; i++) {
+ name[i] = H5Tget_member_name(type, i);
+ H5Tget_member_value(type, i, value + i * H5Tget_size(type));
+ }
+
+ /* Convert values to native datatype */
+ if (native > 0)
+ H5Tconvert(super, native, nmembs, value, NULL, H5P_DEFAULT);
+
+ /* Sort members by increasing value */
+ /*not implemented yet */
+
+ /* Print members */
+ ctx.indent_level++;
+ dump_indent += COL;
+ for (i = 0; i < nmembs; i++) {
+ char *t_name = xml_escape_the_name(name[i]);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sEnumElement>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "%s", t_name);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ free(t_name);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sEnumElement>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "<%sEnumValue>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level++;
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ if (native < 0) {
+ h5tools_str_append(&buffer, "0x");
+
+ for (j = 0; j < dst_size; j++)
+ h5tools_str_append(&buffer, "%02x", value[i * dst_size + j]);
+ }
+ else if (H5T_SGN_NONE == H5Tget_sign(native)) {
+ h5tools_str_append(&buffer,"%" H5_PRINTF_LL_WIDTH "u", *((unsigned long long *)
+ ((void *) (value + i * dst_size))));
+ }
+ else {
+ h5tools_str_append(&buffer,"%" H5_PRINTF_LL_WIDTH "d",
+ *((long long *) ((void *) (value + i * dst_size))));
+ }
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ ctx.indent_level--;
+
+ ctx.need_prefix = TRUE;
+ h5tools_simple_prefix(stdout, outputformat, &ctx, 0, 0);
+
+ /* Render the element */
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, "</%sEnumValue>",xmlnsprefix);
+ h5tools_render_element(stdout, outputformat, &ctx, &buffer, &curr_pos, outputformat->line_ncols, 0, 0);
+ }
+ ctx.indent_level--;
+ dump_indent -= COL;
+
+ h5tools_str_close(&buffer);
+
+ /* Release resources */
+ for (i = 0; i < nmembs; i++)
+ free(name[i]);
+
+ free(name);
+ free(value);
+ H5Tclose(super);
+}
+
diff --git a/tools/h5dump/h5dump_xml.h b/tools/h5dump/h5dump_xml.h
new file mode 100644
index 0000000..28485f8
--- /dev/null
+++ b/tools/h5dump/h5dump_xml.h
@@ -0,0 +1,128 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+#ifndef H5DUMP_XML_H__
+#define H5DUMP_XML_H__
+
+extern const char *xmlnsprefix;
+
+/*
+ * Alternative formating for data dumped to XML
+ * In general, the numbers are the same, but separators
+ * except spaces are not used.
+ *
+ * Some of these are not used, as some kinds of data are
+ * dumped in completely new subroutines.
+ *
+ * Some of this formatting may yet need to change.
+ *
+ * This table only affects XML output.
+ */
+static h5tool_format_t xml_dataformat = {
+ 0, /*raw */
+
+ "", /*fmt_raw */
+ "%d", /*fmt_int */
+ "%u", /*fmt_uint */
+ "%hhd", /*fmt_schar */
+ "%u", /*fmt_uchar */
+ "%d", /*fmt_short */
+ "%u", /*fmt_ushort */
+ "%ld", /*fmt_long */
+ "%lu", /*fmt_ulong */
+ NULL, /*fmt_llong */
+ NULL, /*fmt_ullong */
+ "%g", /*fmt_double */
+ "%g", /*fmt_float */
+
+ 0, /*ascii */
+ 0, /*str_locale */
+ 0, /*str_repeat */
+
+ "", /*arr_pre */
+ "", /*arr_sep */
+ "", /*arr_suf */
+ 1, /*arr_linebreak */
+
+ "", /*cmpd_name */
+ "", /*cmpd_sep */
+ "", /*cmpd_pre */
+ "", /*cmpd_suf */
+ "", /*cmpd_end */
+
+ " ", /*vlen_sep */
+ " ", /*vlen_pre */
+ "", /*vlen_suf */
+ "", /*vlen_end */
+
+ "%s", /*elmt_fmt */
+ "", /*elmt_suf1 */
+ " ", /*elmt_suf2 */
+
+ "", /*idx_n_fmt */
+ "", /*idx_sep */
+ "", /*idx_fmt */
+
+ 80, /*line_ncols *//*standard default columns */
+ 0, /*line_per_line */
+ "", /*line_pre */
+ "%s", /*line_1st */
+ "%s", /*line_cont */
+ "", /*line_suf */
+ "", /*line_sep */
+ 1, /*line_multi_new */
+ " ", /*line_indent */
+
+ 1, /*skip_first */
+
+ 1, /*obj_hidefileno */
+ " "H5_PRINTF_HADDR_FMT, /*obj_format */
+
+ 1, /*dset_hidefileno */
+ "DATASET %s ", /*dset_format */
+ "%s", /*dset_blockformat_pre */
+ "%s", /*dset_ptformat_pre */
+ "%s", /*dset_ptformat */
+ 0, /*array indices */
+ 0 /*escape non printable characters */
+};
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* internal functions used by XML option */
+static void xml_print_datatype(hid_t, unsigned);
+static void xml_print_enum(hid_t);
+static int xml_print_refs(hid_t, int);
+static int xml_print_strs(hid_t, int);
+static char *xml_escape_the_string(const char *, int);
+static char *xml_escape_the_name(const char *);
+
+/* The dump functions of the dump_function_table */
+/* XML format: same interface, alternative output */
+
+void xml_dump_group(hid_t, const char *);
+void xml_dump_named_datatype(hid_t, const char *);
+void xml_dump_dataset(hid_t, const char *, struct subset_t *);
+void xml_dump_dataspace(hid_t space);
+void xml_dump_datatype(hid_t type);
+herr_t xml_dump_attr(hid_t, const char *, const H5A_info_t *, void *);
+void xml_dump_data(hid_t, int, struct subset_t *, int);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* !H5DUMP_XML_H__ */
generated by cgit v0.12 at 2024-12-26 20:09:03 (GMT)