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authorMohamad Chaarawi <chaarawi@hdfgroup.org>2016-04-13 17:41:24 (GMT)
committerMohamad Chaarawi <chaarawi@hdfgroup.org>2016-04-13 17:41:24 (GMT)
commit257689f6b4511ed3031d08d638550aa2e864d294 (patch)
treea05fb4bbd91ca946baea2282d7f34ac75c08eb4a /tools/h5dump
parentafd696593b786db4c68d7ad0235da145ba250568 (diff)
parent261f8c83611db7b19f3a697720926d825b375a1d (diff)
downloadhdf5-257689f6b4511ed3031d08d638550aa2e864d294.zip
hdf5-257689f6b4511ed3031d08d638550aa2e864d294.tar.gz
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[svn-r29689] old merge from trunk.
Diffstat (limited to 'tools/h5dump')
-rw-r--r--tools/h5dump/CMakeTests.cmake25
-rw-r--r--tools/h5dump/CMakeTestsVDS.cmake28
-rw-r--r--tools/h5dump/h5dump.c18
-rw-r--r--tools/h5dump/h5dump.h2
-rw-r--r--tools/h5dump/h5dump_ddl.c306
-rw-r--r--tools/h5dump/h5dump_extern.h2
-rw-r--r--tools/h5dump/h5dumpgentest.c177
-rw-r--r--tools/h5dump/testh5dump.sh.in13
-rw-r--r--tools/h5dump/testh5dumpvds.sh.in18
9 files changed, 387 insertions, 202 deletions
diff --git a/tools/h5dump/CMakeTests.cmake b/tools/h5dump/CMakeTests.cmake
index c256e11..9f7e2b0 100644
--- a/tools/h5dump/CMakeTests.cmake
+++ b/tools/h5dump/CMakeTests.cmake
@@ -103,6 +103,12 @@
${HDF5_TOOLS_SRC_DIR}/testfiles/tindicessub3.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/tindicessub4.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/tindicesyes.ddl
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dims.ddl
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsBlock2.ddl
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsBlockEq.ddl
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsCount2.ddl
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsCountEq.ddl
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsStride2.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/tintsattrs.ddl
${HDF5_TOOLS_SRC_DIR}/testfiles/tlarge_objname.ddl
#${HDF5_TOOLS_SRC_DIR}/testfiles/tldouble.ddl
@@ -244,6 +250,7 @@
${HDF5_TOOLS_SRC_DIR}/testfiles/tgrp_comments.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/thlink.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/thyperslab.h5
+ ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dims.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tintsattrs.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tlarge_objname.h5
#${HDF5_TOOLS_SRC_DIR}/testfiles/tldouble.h5
@@ -915,6 +922,18 @@
texceedsubblock.out.err
tindicesyes.out
tindicesyes.out.err
+ tints4dims.out
+ tints4dims.out.err
+ tints4dimsBlock2.out
+ tints4dimsBlock2.out.err
+ tints4dimsBlockEq.out
+ tints4dimsBlockEq.out.err
+ tints4dimsCount2.out
+ tints4dimsCount2.out.err
+ tints4dimsCountEq.out
+ tints4dimsCountEq.out.err
+ tints4dimsStride2.out
+ tints4dimsStride2.out.err
tintsattrs.out
tintsattrs.out.err
tlarge_objname.out
@@ -1236,6 +1255,12 @@
ADD_H5_TEST (tdset-3s 0 --enable-error-stack -d "/dset1[1,1;;;]" tdset.h5)
ADD_H5_TEST (tno-subset 0 --enable-error-stack --no-compact-subset -d "AHFINDERDIRECT::ah_centroid_t[0] it=0 tl=0" tno-subset.h5)
+ ADD_H5_TEST (tints4dimsCount2 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -c 2,2,2,2 tints4dims.h5)
+ ADD_H5_TEST (tints4dimsBlock2 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -c 1,1,1,1 -k 2,2,2,2 tints4dims.h5)
+ ADD_H5_TEST (tints4dimsStride2 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,2,2 -c 2,2,2,2 tints4dims.h5)
+ ADD_H5_TEST (tints4dimsCountEq 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,1,1 -k 1,2,1,1 -c 2,2,4,4 tints4dims.h5)
+ ADD_H5_TEST (tints4dimsBlockEq 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,1,1 -c 2,2,1,1 -k 1,2,4,4 tints4dims.h5)
+
# test printing characters in ASCII instead of decimal
ADD_H5_TEST (tchar1 0 --enable-error-stack -r tchar.h5)
diff --git a/tools/h5dump/CMakeTestsVDS.cmake b/tools/h5dump/CMakeTestsVDS.cmake
index 58287fa..cc68896 100644
--- a/tools/h5dump/CMakeTestsVDS.cmake
+++ b/tools/h5dump/CMakeTestsVDS.cmake
@@ -22,6 +22,11 @@
tvds_layout-3_2.ddl
tvds_layout-4.ddl
tvds_layout-5.ddl
+ vds-first.ddl
+ vds-gap1.ddl
+ vds-gap2.ddl
+ vds_layout-eiger.ddl
+ vds_layout-maxmin.ddl
)
set (HDF5_REFERENCE_TEST_VDS
1_a.h5
@@ -47,6 +52,14 @@
5_b.h5
5_c.h5
5_vds.h5
+ a.h5
+ b.h5
+ c.h5
+ d.h5
+ vds-percival-unlim-maxmin.h5
+ f-0.h5
+ f-3.h5
+ vds-eiger.h5
)
set (HDF5_ERROR_REFERENCE_VDS
)
@@ -184,6 +197,12 @@
tvds-4.out.err
tvds-5.out
tvds-5.out.err
+ vds-first.out
+ vds-first.out.err
+ vds-gap1.out
+ vds-gap1.out.err
+ vds-gap2.out
+ vds-gap2.out.err
tvds_layout-1.out
tvds_layout-1.out.err
tvds_layout-2.out
@@ -196,6 +215,10 @@
tvds_layout-4.out.err
tvds_layout-5.out
tvds_layout-5.out.err
+ vds_layout-eiger.out
+ vds_layout-eiger.out.err
+ vds_layout-maxmin.out
+ vds_layout-maxmin.out.err
)
set_tests_properties (H5DUMP_VDS-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds")
if (NOT "${last_vds_test}" STREQUAL "")
@@ -225,6 +248,9 @@
ADD_H5_VDS_TEST (tvds-3_2 0 --enable-error-stack 3_2_vds.h5)
ADD_H5_VDS_TEST (tvds-4 0 --enable-error-stack 4_vds.h5)
ADD_H5_VDS_TEST (tvds-5 0 --enable-error-stack 5_vds.h5)
+ ADD_H5_VDS_TEST (vds-first 0 --vds-view-first-missing --enable-error-stack vds-percival-unlim-maxmin.h5)
+ ADD_H5_VDS_TEST (vds-gap1 0 -d /VDS-Eiger --vds-gap-size=1 --enable-error-stack vds-eiger.h5)
+ ADD_H5_VDS_TEST (vds-gap2 0 --vds-gap-size=2 --enable-error-stack vds-eiger.h5)
endif (USE_FILTER_DEFLATE)
# Layout read
@@ -235,4 +261,6 @@
ADD_H5_VDS_LAYOUT (tvds_layout-3_2 0 --enable-error-stack 3_2_vds.h5)
ADD_H5_VDS_LAYOUT (tvds_layout-4 0 --enable-error-stack 4_vds.h5)
ADD_H5_VDS_LAYOUT (tvds_layout-5 0 --enable-error-stack 5_vds.h5)
+ ADD_H5_VDS_LAYOUT (vds_layout-eiger 0 --enable-error-stack vds-eiger.h5)
+ ADD_H5_VDS_LAYOUT (vds_layout-maxmin 0 --enable-error-stack vds-percival-unlim-maxmin.h5)
endif (USE_FILTER_DEFLATE)
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index ffba581..553db93 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -71,7 +71,7 @@ struct handler_t {
*/
/* The following initialization makes use of C language cancatenating */
/* "xxx" "yyy" into "xxxyyy". */
-static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RECM:O*N:";
+static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RECM:O*N:vG:";
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
{ "hel", no_arg, 'h' },
@@ -190,6 +190,8 @@ static struct long_options l_opts[] = {
{ "no-compact-subset", no_arg, 'C' },
{ "ddl", optional_arg, 'O' },
{ "any_path", require_arg, 'N' },
+ { "vds-view-first-missing", no_arg, 'v' },
+ { "vds-gap-size", require_arg, 'G' },
{ NULL, 0, '\0' }
};
@@ -242,7 +244,7 @@ usage(const char *prog)
PRINTVALSTREAM(rawoutstream, " -o F, --output=F Output raw data into file F\n");
PRINTVALSTREAM(rawoutstream, " -b B, --binary=B Binary file output, of form B\n");
PRINTVALSTREAM(rawoutstream, " -O F, --ddl=F Output ddl text into file F\n");
- PRINTVALSTREAM(rawoutstream, " Do not use filename F to suppress ddl display\n");
+ PRINTVALSTREAM(rawoutstream, " Use blank(empty) filename F to suppress ddl display\n");
PRINTVALSTREAM(rawoutstream, "--------------- Object Options ---------------\n");
PRINTVALSTREAM(rawoutstream, " -a P, --attribute=P Print the specified attribute\n");
PRINTVALSTREAM(rawoutstream, " If an attribute name contains a slash (/), escape the\n");
@@ -256,6 +258,8 @@ usage(const char *prog)
PRINTVALSTREAM(rawoutstream, " P can be the absolute path or just a relative path.\n");
PRINTVALSTREAM(rawoutstream, " -A, --onlyattr Print the header and value of attributes\n");
PRINTVALSTREAM(rawoutstream, " Optional value 0 suppresses printing attributes.\n");
+ PRINTVALSTREAM(rawoutstream, " --vds-view-first-missing Set the VDS bounds to first missing mapped elements.\n");
+ PRINTVALSTREAM(rawoutstream, " --vds-gap-size=N Set the missing file gap size, N=non-negative integers\n");
PRINTVALSTREAM(rawoutstream, "--------------- Object Property Options ---------------\n");
PRINTVALSTREAM(rawoutstream, " -i, --object-ids Print the object ids\n");
PRINTVALSTREAM(rawoutstream, " -p, --properties Print dataset filters, storage layout and fill value\n");
@@ -1121,6 +1125,16 @@ parse_start:
}
display_packed_bits = TRUE;
break;
+ case 'v':
+ display_vds_first = TRUE;
+ break;
+ case 'G':
+ vds_gap_size = HDatoi(opt_arg);
+ if (vds_gap_size < 0) {
+ usage(h5tools_getprogname());
+ goto error;
+ }
+ break;
/** begin XML parameters **/
case 'x':
diff --git a/tools/h5dump/h5dump.h b/tools/h5dump/h5dump.h
index 2b1fb04..7cf4efd 100644
--- a/tools/h5dump/h5dump.h
+++ b/tools/h5dump/h5dump.h
@@ -78,6 +78,8 @@ int enable_error_stack= FALSE; /* re-enable error stack */
int disable_compact_subset= FALSE; /* disable compact form of subset notation */
int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/
int include_attrs = TRUE; /* Display attributes */
+int display_vds_first = FALSE; /* vds display to all by default*/
+int vds_gap_size = 0; /* vds skip missing files default is none */
/* sort parameters */
H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */
diff --git a/tools/h5dump/h5dump_ddl.c b/tools/h5dump/h5dump_ddl.c
index fd50710..09751ab 100644
--- a/tools/h5dump/h5dump_ddl.c
+++ b/tools/h5dump/h5dump_ddl.c
@@ -26,12 +26,12 @@
typedef struct {
hid_t fid; /* File ID being traversed */
- char *op_name; /* Object name wanted */
+ char *op_name; /* Object name wanted */
} trav_handle_udata_t;
typedef struct {
- char *path; /* Path of object being searched */
- char *op_name; /* Object name wanted */
+ char *path; /* Path of object being searched */
+ char *op_name; /* Object name wanted */
} trav_attr_udata_t;
/* callback function used by H5Literate() */
@@ -90,7 +90,7 @@ dump_dataspace(hid_t space)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
h5tools_dump_dataspace(rawoutstream, outputformat, &ctx, space);
}
@@ -117,19 +117,19 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
h5tools_context_t ctx; /* print context */
h5tool_format_t *outputformat = &h5tools_dataformat;
h5tool_format_t string_dataformat;
-
+
hid_t attr_id;
herr_t ret = SUCCEED;
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT);
oid_output = display_oid;
data_output = display_data;
attr_data_output = display_attr_data;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -155,7 +155,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
}
-
+
return ret;
}
@@ -185,6 +185,7 @@ static herr_t
dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR_UNUSED *op_data)
{
hid_t obj;
+ hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */
herr_t ret = SUCCEED;
char *obj_path = NULL; /* Full path of object */
h5tools_str_t buffer; /* string into which to render */
@@ -199,7 +200,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -222,8 +223,8 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
if(!obj_path) {
ret = FAIL;
goto done;
- }
-
+ }
+
HDstrcpy(obj_path, prefix);
HDstrcat(obj_path, "/");
HDstrcat(obj_path, name);
@@ -269,7 +270,20 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
break;
case H5O_TYPE_DATASET:
- if((obj = H5Dopen2(group, name, H5P_DEFAULT)) >= 0) {
+ if(display_data) {
+ if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) {
+ error_msg("error in creating default access property list ID\n");
+ }
+ if (display_vds_first) {
+ if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0)
+ error_msg("error in setting access property list ID, virtual_view\n");
+ }
+ if (vds_gap_size > 0) {
+ if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0)
+ error_msg("error in setting access property list ID, virtual_printf_gap\n");
+ }
+ }
+ if((obj = H5Dopen2(group, name, dapl_id)) >= 0) {
if(oinfo.rc > 1 || hit_elink) {
obj_t *found_obj; /* Found object */
@@ -308,9 +322,11 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
+ if (dapl_id != H5P_DEFAULT)
+ H5Pclose(dapl_id);
H5Dclose(obj);
goto done;
- }
+ }
else if(found_obj->displayed) {
ctx.need_prefix = TRUE;
h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0);
@@ -347,18 +363,24 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetend);
h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0);
+ if (dapl_id != H5P_DEFAULT)
+ H5Pclose(dapl_id);
H5Dclose(obj);
goto done;
- }
+ }
else {
found_obj->displayed = TRUE;
}
} /* end if */
dump_function_table->dump_dataset_function(obj, name, NULL);
+ if (dapl_id != H5P_DEFAULT)
+ H5Pclose(dapl_id);
H5Dclose(obj);
- }
+ }
else {
+ if (dapl_id)
+ H5Pclose(dapl_id && dapl_id != H5P_DEFAULT);
error_msg("unable to dump dataset \"%s\"\n", name);
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
@@ -370,7 +392,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
error_msg("unable to dump datatype \"%s\"\n", name);
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
- }
+ }
else {
dump_function_table->dump_named_datatype_function(obj, name);
H5Tclose(obj);
@@ -408,7 +430,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
error_msg("unable to get link value\n");
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
- }
+ }
else {
/* print the value of a soft link */
/* Standard DDL: no modification */
@@ -558,7 +580,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
done:
h5tools_str_close(&buffer);
-
+
if(obj_path)
HDfree(obj_path);
return ret;
@@ -650,7 +672,7 @@ dump_named_datatype(hid_t tid, const char *name)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -685,7 +707,7 @@ dump_named_datatype(hid_t tid, const char *name)
}
ctx.need_prefix = TRUE;
-
+
/* Render the element */
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s \"%s\" %s",
@@ -718,7 +740,7 @@ dump_named_datatype(hid_t tid, const char *name)
else
found_obj->displayed = TRUE;
} /* end if */
-
+
/* Render the element */
h5tools_str_reset(&buffer);
h5tools_print_datatype(rawoutstream, &buffer, outputformat, &ctx, tid, FALSE);
@@ -726,7 +748,7 @@ dump_named_datatype(hid_t tid, const char *name)
if(H5Tget_class(tid) != H5T_COMPOUND) {
h5tools_str_append(&buffer, ";");
}
-
+
h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0);
/* print attributes */
@@ -813,7 +835,7 @@ dump_group(hid_t gid, const char *name)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -839,7 +861,7 @@ dump_group(hid_t gid, const char *name)
h5tools_dump_header_format->groupbegin, name,
h5tools_dump_header_format->groupblockbegin);
h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0);
-
+
ctx.indent_level++;
dump_indent += COL;
@@ -948,7 +970,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -982,7 +1004,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
ctx.need_prefix = TRUE;
h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0);
-
+
/* Render the element */
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s \"%s\" %s",
@@ -994,7 +1016,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
dump_indent += COL;
ctx.indent_level++;
-
+
type = H5Dget_type(did);
h5dump_type_table = type_table;
h5tools_dump_datatype(rawoutstream, outputformat, &ctx, type);
@@ -1018,6 +1040,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
if(display_data) {
int data_loop = 1;
int i;
+
if(display_packed_bits)
data_loop = packed_bits_num;
for(i=0; i<data_loop; i++) {
@@ -1042,7 +1065,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "DATA{ not yet implemented.}");
h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0);
-
+
ctx.indent_level--;
break;
@@ -1079,7 +1102,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
ctx.need_prefix = TRUE;
h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0);
-
+
/* Render the element */
h5tools_str_reset(&buffer);
if(HDstrlen(h5tools_dump_header_format->datasetblockend)) {
@@ -1189,7 +1212,7 @@ dump_fcpl(hid_t fid)
fdriver=H5Pget_driver(fapl);
H5Pclose(fapl);
#endif
-
+
/*-------------------------------------------------------------------------
* SUPER_BLOCK
*-------------------------------------------------------------------------
@@ -1308,54 +1331,54 @@ static herr_t
attr_search(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ainfo, void *_op_data)
{
herr_t ret = SUCCEED;
- int i;
- int j;
- int k;
- char *obj_op_name;
+ int i;
+ int j;
+ int k;
+ char *obj_op_name;
char *obj_name;
- trav_attr_udata_t *attr_data = (trav_attr_udata_t*)_op_data;
+ trav_attr_udata_t *attr_data = (trav_attr_udata_t*)_op_data;
char *buf = attr_data->path;
- char *op_name = attr_data->op_name;
+ char *op_name = attr_data->op_name;
j = (int)HDstrlen(op_name) - 1;
/* find the last / */
while(j >= 0) {
- if (op_name[j] == '/' && (j==0 || (j>0 && op_name[j-1]!='\\')))
- break;
- j--;
+ if (op_name[j] == '/' && (j==0 || (j>0 && op_name[j-1]!='\\')))
+ break;
+ j--;
}
obj_op_name = h5tools_str_replace(op_name + j + 1, "\\/", "/");
if(obj_op_name == NULL) {
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
}
else {
- if(HDstrcmp(attr_name, obj_op_name)==0) {
- /* object name */
- i = (int)HDstrlen(buf);
- j = (int)HDstrlen(op_name);
- k = (size_t)i + 1 + (size_t)j + 1 + 2;
- obj_name = (char *)HDmalloc((size_t)k);
- if(obj_name == NULL) {
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- }
- else {
- HDmemset(obj_name, '\0', (size_t)k);
- if(op_name[0] != '/') {
- HDstrncat(obj_name, buf, (size_t)i + 1);
- if(buf[i-1] != '/')
- HDstrncat(obj_name, "/", (size_t)2);
- }
- HDstrncat(obj_name, op_name, (size_t)j + 1);
-
- handle_attributes(oid, obj_name, NULL, 0, NULL);
- HDfree(obj_name);
- }
- }
- HDfree(obj_op_name);
+ if(HDstrcmp(attr_name, obj_op_name)==0) {
+ /* object name */
+ i = (int)HDstrlen(buf);
+ j = (int)HDstrlen(op_name);
+ k = (size_t)i + 1 + (size_t)j + 1 + 2;
+ obj_name = (char *)HDmalloc((size_t)k);
+ if(obj_name == NULL) {
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ HDmemset(obj_name, '\0', (size_t)k);
+ if(op_name[0] != '/') {
+ HDstrncat(obj_name, buf, (size_t)i + 1);
+ if(buf[i-1] != '/')
+ HDstrncat(obj_name, "/", (size_t)2);
+ }
+ HDstrncat(obj_name, op_name, (size_t)j + 1);
+
+ handle_attributes(oid, obj_name, NULL, 0, NULL);
+ HDfree(obj_name);
+ }
+ }
+ HDfree(obj_op_name);
}
return ret;
} /* end attr_search() */
@@ -1363,7 +1386,7 @@ attr_search(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *a
static herr_t
obj_search(const char *path, const H5O_info_t *oi, const char H5_ATTR_UNUSED *already_visited, void *_op_data)
{
- trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data;
+ trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data;
char *op_name = (char*)handle_data->op_name;
trav_attr_udata_t attr_data;
@@ -1372,22 +1395,22 @@ obj_search(const char *path, const H5O_info_t *oi, const char H5_ATTR_UNUSED *al
H5Aiterate_by_name(handle_data->fid, path, H5_INDEX_NAME, H5_ITER_INC, NULL, attr_search, (void*)&attr_data, H5P_DEFAULT);
if(HDstrcmp(path, op_name)==0) {
- switch(oi->type) {
- case H5O_TYPE_GROUP:
- handle_groups(handle_data->fid, path, NULL, 0, NULL);
- break;
- case H5O_TYPE_DATASET:
- handle_datasets(handle_data->fid, path, NULL, 0, NULL);
- break;
- case H5O_TYPE_NAMED_DATATYPE:
- handle_datatypes(handle_data->fid, path, NULL, 0, NULL);
- break;
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- error_msg("unknown object type value\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end switch */
+ switch(oi->type) {
+ case H5O_TYPE_GROUP:
+ handle_groups(handle_data->fid, path, NULL, 0, NULL);
+ break;
+ case H5O_TYPE_DATASET:
+ handle_datasets(handle_data->fid, path, NULL, 0, NULL);
+ break;
+ case H5O_TYPE_NAMED_DATATYPE:
+ handle_datatypes(handle_data->fid, path, NULL, 0, NULL);
+ break;
+ case H5O_TYPE_UNKNOWN:
+ case H5O_TYPE_NTYPES:
+ default:
+ error_msg("unknown object type value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end switch */
}
return 0;
@@ -1397,48 +1420,48 @@ static herr_t
lnk_search(const char *path, const H5L_info_t *li, void *_op_data)
{
int search_len;
- int k;
+ int k;
char *search_name;
- trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data;
+ trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data;
char *op_name = (char*)handle_data->op_name;
search_len = HDstrlen(op_name);
if(search_len > 0 && op_name[0] != '/') {
- k = 2;
+ k = 2;
}
else
k = 1;
- search_name = (char *)HDmalloc((size_t)(search_len + k));
+ search_name = (char *)HDmalloc((size_t)(search_len + k));
if(search_name == NULL) {
- error_msg("creating temporary link\n");
- h5tools_setstatus(EXIT_FAILURE);
+ error_msg("creating temporary link\n");
+ h5tools_setstatus(EXIT_FAILURE);
}
else {
- if (k == 2) {
- HDstrcpy(search_name, "/");
- HDstrncat(search_name, op_name, (size_t)search_len + 1);
- }
- else
- HDstrncpy(search_name, op_name, (size_t)search_len + 1);
- search_name[search_len + k - 1] = '\0';
-
- if(HDstrcmp(path, search_name) == 0) {
- switch(li->type) {
- case H5L_TYPE_SOFT:
- case H5L_TYPE_EXTERNAL:
- handle_links(handle_data->fid, op_name, NULL, 0, NULL);
- break;
-
- case H5L_TYPE_HARD:
- case H5L_TYPE_MAX:
- case H5L_TYPE_ERROR:
- default:
- error_msg("unknown link type value\n");
- h5tools_setstatus(EXIT_FAILURE);
- break;
- } /* end switch() */
- }
- HDfree(search_name);
+ if (k == 2) {
+ HDstrcpy(search_name, "/");
+ HDstrncat(search_name, op_name, (size_t)search_len + 1);
+ }
+ else
+ HDstrncpy(search_name, op_name, (size_t)search_len + 1);
+ search_name[search_len + k - 1] = '\0';
+
+ if(HDstrcmp(path, search_name) == 0) {
+ switch(li->type) {
+ case H5L_TYPE_SOFT:
+ case H5L_TYPE_EXTERNAL:
+ handle_links(handle_data->fid, op_name, NULL, 0, NULL);
+ break;
+
+ case H5L_TYPE_HARD:
+ case H5L_TYPE_MAX:
+ case H5L_TYPE_ERROR:
+ default:
+ error_msg("unknown link type value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ break;
+ } /* end switch() */
+ }
+ HDfree(search_name);
}
return 0;
} /* end lnk_search() */
@@ -1465,7 +1488,7 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H
hid_t gcpl_id;
unsigned crt_order_flags;
unsigned attr_crt_order_flags;
- trav_handle_udata_t handle_udata; /* User data for traversal */
+ trav_handle_udata_t handle_udata; /* User data for traversal */
if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
error_msg("error in getting group creation property list ID\n");
@@ -1489,12 +1512,12 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H
h5tools_setstatus(EXIT_FAILURE);
}
- handle_udata.fid = fid;
- handle_udata.op_name = (char*)path_name;
- if(h5trav_visit(fid, "/", TRUE, TRUE, obj_search, lnk_search, &handle_udata) < 0) {
- error_msg("error traversing information\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
+ handle_udata.fid = fid;
+ handle_udata.op_name = (char*)path_name;
+ if(h5trav_visit(fid, "/", TRUE, TRUE, obj_search, lnk_search, &handle_udata) < 0) {
+ error_msg("error traversing information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
}
}
@@ -1536,7 +1559,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H
/* find the last / */
while(j >= 0) {
- if (attr[j] == '/' && (j==0 || (j>0 && attr[j-1]!='\\')))
+ if (attr[j] == '/' && (j==0 || (j>0 && attr[j-1]!='\\')))
break;
j--;
}
@@ -1571,7 +1594,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H
string_dataformat.do_escape = display_escape;
outputformat = &string_dataformat;
- attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/");
+ attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/");
/* handle error case: cannot open the object with the attribute */
if((oid = H5Oopen(fid, obj_name, H5P_DEFAULT)) < 0) {
@@ -1627,7 +1650,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H
} /* end if */
HDfree(obj_name);
- HDfree(attr_name);
+ HDfree(attr_name);
dump_indent -= COL;
return;
@@ -1635,9 +1658,9 @@ error:
h5tools_setstatus(EXIT_FAILURE);
if(obj_name)
HDfree(obj_name);
-
- if (attr_name)
- HDfree(attr_name);
+
+ if (attr_name)
+ HDfree(attr_name);
H5E_BEGIN_TRY {
H5Oclose(oid);
@@ -1672,10 +1695,24 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
{
H5O_info_t oinfo;
hid_t dsetid;
+ hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */
struct subset_t *sset = (struct subset_t *)data;
const char *real_name = display_name ? display_name : dset;
- if((dsetid = H5Dopen2(fid, dset, H5P_DEFAULT)) < 0) {
+ if(display_data) {
+ if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) {
+ error_msg("error in creating default access property list ID\n");
+ }
+ if (display_vds_first) {
+ if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0)
+ error_msg("error in setting access property list ID, virtual_view\n");
+ }
+ if (vds_gap_size > 0) {
+ if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0)
+ error_msg("error in setting access property list ID, virtual_printf_gap\n");
+ }
+ }
+ if((dsetid = H5Dopen2(fid, dset, dapl_id)) < 0) {
if (pe) {
handle_links(fid, dset, data, pe, display_name);
}
@@ -1752,7 +1789,7 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
h5tools_setstatus(EXIT_FAILURE);
return;
}
-
+
/*-------------------------------------------------------------------------
* check for block overlap
*-------------------------------------------------------------------------
@@ -1785,7 +1822,7 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
PRINTSTREAM(rawoutstream, "%s \"%s\"\n", HARDLINK, found_obj->objname);
indentation(dump_indent);
end_obj(h5tools_dump_header_format->datasetend, h5tools_dump_header_format->datasetblockend);
- }
+ }
else {
found_obj->displayed = TRUE;
dump_indent += COL;
@@ -1801,7 +1838,8 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
dump_dataset(dsetid, real_name, sset);
dump_indent -= COL;
}
-
+ if (dapl_id != H5P_DEFAULT)
+ H5Pclose(dapl_id);
if(H5Dclose(dsetid) < 0)
h5tools_setstatus(EXIT_FAILURE);
}
@@ -1884,11 +1922,11 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT
if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) {
error_msg("unable to get link info from \"%s\"\n", links);
h5tools_setstatus(EXIT_FAILURE);
- }
+ }
else if(linfo.type == H5L_TYPE_HARD) {
error_msg("\"%s\" is a hard link\n", links);
h5tools_setstatus(EXIT_FAILURE);
- }
+ }
else {
char *buf = (char *)HDmalloc(linfo.u.val_size);
PRINTVALSTREAM(rawoutstream, "\n");
@@ -1925,12 +1963,12 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT
PRINTSTREAM(rawoutstream, "TARGETFILE \"%s\"\n", elink_file);
indentation(COL);
PRINTSTREAM(rawoutstream, "TARGETPATH \"%s\"\n", elink_path);
- }
+ }
else {
error_msg("h5dump error: unable to unpack external link value for \"%s\"\n", links);
h5tools_setstatus(EXIT_FAILURE);
}
- }
+ }
else {
error_msg("h5dump error: unable to get external link value for \"%s\"\n", links);
h5tools_setstatus(EXIT_FAILURE);
diff --git a/tools/h5dump/h5dump_extern.h b/tools/h5dump/h5dump_extern.h
index 08f9e36..62477d0 100644
--- a/tools/h5dump/h5dump_extern.h
+++ b/tools/h5dump/h5dump_extern.h
@@ -77,6 +77,8 @@ extern int enable_error_stack; /* re-enable error stack */
extern int disable_compact_subset; /* disable compact form of subset notation */
extern int display_packed_bits; /*print 1-8 byte numbers as packed bits*/
extern int include_attrs; /* Display attributes */
+extern int display_vds_first; /* vds display to first missing */
+extern int vds_gap_size; /* vds skip missing files */
/* sort parameters */
extern H5_index_t sort_by; /*sort_by [creation_order | name] */
diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c
index 80051d4..668e3f7 100644
--- a/tools/h5dump/h5dumpgentest.c
+++ b/tools/h5dump/h5dumpgentest.c
@@ -110,6 +110,7 @@
#define FILE78 "tscalarintattrsize.h5"
#define FILE79 "tintsattrs.h5"
#define FILE80 "tbitnopaque.h5"
+#define FILE81 "tints4dims.h5"
/*-------------------------------------------------------------------------
* prototypes
@@ -271,20 +272,20 @@ typedef struct s1_t {
#define THRESHOLD10 10 /* Free space section threshold */
/* "FILE66" macros and for FILE69 */
-#define F66_XDIM 8
+#define F66_XDIM 8
#define F66_DATASETU08 "DU08BITS"
#define F66_DATASETS08 "DS08BITS"
-#define F66_YDIM8 8
+#define F66_YDIM8 8
#define F66_DATASETU16 "DU16BITS"
#define F66_DATASETS16 "DS16BITS"
-#define F66_YDIM16 16
+#define F66_YDIM16 16
#define F66_DATASETU32 "DU32BITS"
#define F66_DATASETS32 "DS32BITS"
-#define F66_YDIM32 32
+#define F66_YDIM32 32
#define F66_DATASETU64 "DU64BITS"
#define F66_DATASETS64 "DS64BITS"
#define F66_YDIM64 64
-#define F66_DUMMYDBL "DummyDBL"
+#define F66_DUMMYDBL "DummyDBL"
/* "FILE70" macros and for FILE71 */
/* Name of dataset to create in datafile */
@@ -352,6 +353,13 @@ typedef struct s1_t {
#define F80_DIM32 32
+#define F81_DATASETNAME "FourDimInts"
+#define F81_RANK 4
+#define F81_WDIM 10
+#define F81_XDIM 8
+#define F81_YDIM 6
+#define F81_ZDIM 4
+
static void
gent_group(void)
{
@@ -568,7 +576,7 @@ static void gent_softlink(void)
* Function: gent_softlink2
*
* Purpose: Create soft links to various objects.
- * Return:
+ * Return:
* SUCCEED
* FAIL
* Programmer: Jonathan Kim
@@ -582,7 +590,7 @@ static int gent_softlink2(void)
hid_t gid1 = -1, gid2 = -1;
hid_t datatype = -1;
hid_t dset1 = -1, dset2 = -1;
- hid_t dataspace = -1;
+ hid_t dataspace = -1;
hsize_t dimsf[2]; /* dataset dimensions */
int data1[NX][NY] = {{0,0},{1,1},{2,2},{3,3}};
int data2[NX][NY] = {{0,0},{0,1},{0,2},{3,3}};
@@ -626,7 +634,7 @@ static int gent_softlink2(void)
status = H5Tcommit2(fileid1, "dtype", datatype, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
if (status < 0)
{
- fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", FILE4_1);
+ fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", FILE4_1);
status = FAIL;
goto out;
}
@@ -2896,9 +2904,9 @@ static void gent_vldatatypes5(void)
}
/* This is big enough to make h5dump to use hyperslap to read
- from file and display portion by portion. This also prints out array indices
+ from file and display portion by portion. This also prints out array indices
via region reference for testing refion reference output.
- Note: this was added originally prepared for bug2092. before the fix h5dump didn't
+ Note: this was added originally prepared for bug2092. before the fix h5dump didn't
display array indices every 262 x N (N > 0) based on 2000x1000 dims.
*/
#define SPACE_ARRAY1BIG_DIM 2000
@@ -2945,7 +2953,7 @@ static void gent_array1_big(void)
fid1 = H5Fcreate(FILE25_BIG, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------
- * Array type dataset
+ * Array type dataset
*/
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, sdims1, NULL);
@@ -2961,7 +2969,7 @@ static void gent_array1_big(void)
HDassert(ret >= 0);
/*---------------------------
- * Region Reference dataset
+ * Region Reference dataset
*/
/* Create dataspace for the reference dataset */
sid2 = H5Screate_simple(SPACE1_RANK, dims2, NULL);
@@ -5210,7 +5218,7 @@ static void gent_zero_dim_size(void)
space = H5Screate_simple(SPACE3_RANK, dims1, NULL);
/* dataset */
- dataset = H5Dcreate2(fid, "dset of 0 dimension size", H5T_STD_I32BE, space, H5P_DEFAULT,
+ dataset = H5Dcreate2(fid, "dset of 0 dimension size", H5T_STD_I32BE, space, H5P_DEFAULT,
H5P_DEFAULT, H5P_DEFAULT);
/* nothing should be written */
H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &dset_buf);
@@ -7064,7 +7072,7 @@ gent_packedbits(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETU16, H5T_STD_U16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- valu16bits = (uint16_t) ~0u; /* all 1s */
+ valu16bits = (uint16_t) ~0u; /* all 1s */
for(i = 0; i < dims[0]; i++){
dsetu16[i][0] = valu16bits;
for(j = 1; j < dims[1]; j++)
@@ -7081,7 +7089,7 @@ gent_packedbits(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETU32, H5T_STD_U32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- valu32bits = (uint32_t) ~0u; /* all 1s */
+ valu32bits = (uint32_t) ~0u; /* all 1s */
for(i = 0; i < dims[0]; i++){
dsetu32[i][0] = valu32bits;
for(j = 1; j < dims[1]; j++)
@@ -7115,7 +7123,7 @@ gent_packedbits(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETS08, H5T_STD_I8LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- val8bits = (int8_t) ~0; /* all 1s */
+ val8bits = (int8_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset8[i][0] = val8bits;
for(j = 1; j < dims[1]; j++)
@@ -7132,7 +7140,7 @@ gent_packedbits(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETS16, H5T_STD_I16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- val16bits = (int16_t) ~0; /* all 1s */
+ val16bits = (int16_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset16[i][0] = val16bits;
for(j = 1; j < dims[1]; j++)
@@ -7149,7 +7157,7 @@ gent_packedbits(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETS32, H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- val32bits = (int32_t) ~0; /* all 1s */
+ val32bits = (int32_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset32[i][0] = val32bits;
for(j = 1; j < dims[1]; j++)
@@ -8638,7 +8646,7 @@ static void gent_compound_int_array(void) {
valu8bits = (uint8_t) ~0u; /* all 1s */
for(n = 0; n < dims[0]; n++){
- Cmpd1[m].dsetu8[n] = valu8bits;
+ Cmpd1[m].dsetu8[n] = valu8bits;
valu8bits <<= 1;
}
@@ -8647,7 +8655,7 @@ static void gent_compound_int_array(void) {
valu16bits = (uint16_t) ~0u; /* all 1s */
for(n = 0; n < dims[0]; n++){
- Cmpd1[m].dsetu16[n] = valu16bits;
+ Cmpd1[m].dsetu16[n] = valu16bits;
valu16bits <<= 1;
}
@@ -8656,7 +8664,7 @@ static void gent_compound_int_array(void) {
valu32bits = (uint32_t) ~0u; /* all 1s */
for(n = 0; n < dims[0]; n++){
- Cmpd1[m].dsetu32[n] = valu32bits;
+ Cmpd1[m].dsetu32[n] = valu32bits;
valu32bits <<= 1;
}
@@ -8665,7 +8673,7 @@ static void gent_compound_int_array(void) {
valu64bits = (uint64_t) ~0Lu; /* all 1s */
for(n = 0; n < dims[0]; n++){
- Cmpd1[m].dsetu64[n] = valu64bits;
+ Cmpd1[m].dsetu64[n] = valu64bits;
valu64bits <<= 1;
}
@@ -8674,7 +8682,7 @@ static void gent_compound_int_array(void) {
val8bits = (int8_t) ~0; /* all 1s */
for(n = 0; n < dims[0]; n++){
- Cmpd1[m].dset8[n] = val8bits;
+ Cmpd1[m].dset8[n] = val8bits;
val8bits <<= 1;
}
@@ -8683,7 +8691,7 @@ static void gent_compound_int_array(void) {
val16bits = (int16_t) ~0; /* all 1s */
for(n = 0; n < dims[0]; n++){
- Cmpd1[m].dset16[n] = val16bits;
+ Cmpd1[m].dset16[n] = val16bits;
val16bits <<= 1;
}
@@ -8692,7 +8700,7 @@ static void gent_compound_int_array(void) {
val32bits = (int32_t) ~0; /* all 1s */
for(n = 0; n < dims[0]; n++){
- Cmpd1[m].dset32[n] = val32bits;
+ Cmpd1[m].dset32[n] = val32bits;
val32bits <<= 1;
}
@@ -8701,7 +8709,7 @@ static void gent_compound_int_array(void) {
val64bits = (int64_t) ~0L; /* all 1s */
for(n = 0; n < dims[0]; n++){
- Cmpd1[m].dset64[n] = val64bits;
+ Cmpd1[m].dset64[n] = val64bits;
val64bits <<= 1;
}
@@ -8709,7 +8717,7 @@ static void gent_compound_int_array(void) {
dims[0] = F76_DIM8;
for(n = 0; n < dims[0]; n++)
- Cmpd1[m].dsetdbl[n] = 0.0001F + n;
+ Cmpd1[m].dsetdbl[n] = 0.0001F + n;
}
/* Create the array data type for the 8 bits signed int array */
@@ -8884,64 +8892,64 @@ static void gent_compound_ints(void) {
for (m = 0; m < F77_LENGTH; m++) {
/* Array of 8 bits unsigned int */
- if((m % F76_DIM8) == 0)
- valu8bits = (uint8_t) ~0u; /* all 1s */
- Cmpd1[m].dsetu8 = valu8bits;
- Cmpd2[m].dsetu8 = valu8bits;
+ if((m % F76_DIM8) == 0)
+ valu8bits = (uint8_t) ~0u; /* all 1s */
+ Cmpd1[m].dsetu8 = valu8bits;
+ Cmpd2[m].dsetu8 = valu8bits;
valu8bits <<= 1;
/* Array of 16 bits unsigned int */
- if((m % F76_DIM16) == 0)
+ if((m % F76_DIM16) == 0)
valu16bits = (uint16_t) ~0u; /* all 1s */
- Cmpd1[m].dsetu16 = valu16bits;
- Cmpd2[m].dsetu16 = valu16bits;
- valu16bits <<= 1;
+ Cmpd1[m].dsetu16 = valu16bits;
+ Cmpd2[m].dsetu16 = valu16bits;
+ valu16bits <<= 1;
/* Array of 32 bits unsigned int */
- if((m % F76_DIM32) == 0)
+ if((m % F76_DIM32) == 0)
valu32bits = (uint32_t) ~0u; /* all 1s */
- Cmpd1[m].dsetu32 = valu32bits;
- Cmpd2[m].dsetu32 = valu32bits;
- valu32bits <<= 1;
+ Cmpd1[m].dsetu32 = valu32bits;
+ Cmpd2[m].dsetu32 = valu32bits;
+ valu32bits <<= 1;
/* Array of 64 bits unsigned int */
- if((m % F76_DIM64) == 0)
+ if((m % F76_DIM64) == 0)
valu64bits = (uint64_t) ~0Lu; /* all 1s */
- Cmpd1[m].dsetu64 = valu64bits;
- Cmpd2[m].dsetu64 = valu64bits;
- valu64bits <<= 1;
+ Cmpd1[m].dsetu64 = valu64bits;
+ Cmpd2[m].dsetu64 = valu64bits;
+ valu64bits <<= 1;
/* Array of 8 bits signed int */
- if((m % F76_DIM8) == 0)
+ if((m % F76_DIM8) == 0)
val8bits = (int8_t) ~0; /* all 1s */
- Cmpd1[m].dset8 = val8bits;
- Cmpd2[m].dset8 = val8bits;
- val8bits <<= 1;
+ Cmpd1[m].dset8 = val8bits;
+ Cmpd2[m].dset8 = val8bits;
+ val8bits <<= 1;
/* Array of 16 bits signed int */
- if((m % F76_DIM16) == 0)
+ if((m % F76_DIM16) == 0)
val16bits = (int16_t) ~0; /* all 1s */
- Cmpd1[m].dset16 = val16bits;
- Cmpd2[m].dset16 = val16bits;
- val16bits <<= 1;
+ Cmpd1[m].dset16 = val16bits;
+ Cmpd2[m].dset16 = val16bits;
+ val16bits <<= 1;
/* Array of 32 bits signed int */
- if((m % F76_DIM32) == 0)
+ if((m % F76_DIM32) == 0)
val32bits = (int32_t) ~0; /* all 1s */
- Cmpd1[m].dset32 = val32bits;
- Cmpd2[m].dset32 = val32bits;
- val32bits <<= 1;
+ Cmpd1[m].dset32 = val32bits;
+ Cmpd2[m].dset32 = val32bits;
+ val32bits <<= 1;
/* Array of 64 bits signed int */
- if((m % F76_DIM64) == 0)
+ if((m % F76_DIM64) == 0)
val64bits = (int64_t) ~0L; /* all 1s */
- Cmpd1[m].dset64 = val64bits;
- Cmpd2[m].dset64 = val64bits;
- val64bits <<= 1;
+ Cmpd1[m].dset64 = val64bits;
+ Cmpd2[m].dset64 = val64bits;
+ val64bits <<= 1;
/* Double Dummy set for failure tests */
- Cmpd1[m].dsetdbl = 0.0001F + m;
- Cmpd2[m].dsetdbl = 0.0001F + m;
+ Cmpd1[m].dsetdbl = 0.0001F + m;
+ Cmpd2[m].dsetdbl = 0.0001F + m;
}
/* Create the dataspace */
@@ -9352,7 +9360,7 @@ gent_intsattrs(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETU16, H5T_STD_U16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- valu16bits = (uint16_t) ~0u; /* all 1s */
+ valu16bits = (uint16_t) ~0u; /* all 1s */
for(i = 0; i < dims[0]; i++){
dsetu16[i][0] = valu16bits;
asetu16[i*dims[1]] = dsetu16[i][0];
@@ -9379,7 +9387,7 @@ gent_intsattrs(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETU32, H5T_STD_U32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- valu32bits = (uint32_t) ~0u; /* all 1s */
+ valu32bits = (uint32_t) ~0u; /* all 1s */
for(i = 0; i < dims[0]; i++){
dsetu32[i][0] = valu32bits;
asetu32[i*dims[1]] = dsetu32[i][0];
@@ -9433,7 +9441,7 @@ gent_intsattrs(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETS08, H5T_STD_I8LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- val8bits = (int8_t) ~0; /* all 1s */
+ val8bits = (int8_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset8[i][0] = val8bits;
aset8[i*dims[1]] = dset8[i][0];
@@ -9460,7 +9468,7 @@ gent_intsattrs(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETS16, H5T_STD_I16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- val16bits = (int16_t) ~0; /* all 1s */
+ val16bits = (int16_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset16[i][0] = val16bits;
aset16[i*dims[1]] = dset16[i][0];
@@ -9487,7 +9495,7 @@ gent_intsattrs(void)
space = H5Screate_simple(2, dims, NULL);
dataset = H5Dcreate2(fid, F66_DATASETS32, H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
- val32bits = (int32_t) ~0; /* all 1s */
+ val32bits = (int32_t) ~0; /* all 1s */
for(i = 0; i < dims[0]; i++){
dset32[i][0] = val32bits;
aset32[i*dims[1]] = dset32[i][0];
@@ -9710,6 +9718,41 @@ static void gent_bitnopaquefields(void)
H5Fclose(file);
}
+/*-------------------------------------------------------------------------
+ * Function: gent_intsfourdims
+ *
+ * Purpose: Generate a file to be used in the h5dump subsetting tests.
+ * One datasets of unsigned int types are created in four dimensions 2,4,6,10.
+ *-------------------------------------------------------------------------
+ */
+static void
+gent_intsfourdims(void)
+{
+ hid_t fid, dataset, space, tid;
+ hsize_t dims[F81_RANK];
+ uint32_t dset1[F81_ZDIM][F81_YDIM][F81_XDIM][F81_WDIM];
+ unsigned int i, j, k, l;
+
+ fid = H5Fcreate(FILE81, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Dataset of 32 bits unsigned int */
+ dims[0] = F81_ZDIM; dims[1] = F81_YDIM; dims[2] = F81_XDIM; dims[3] = F81_WDIM;
+ space = H5Screate_simple(F81_RANK, dims, NULL);
+ dataset = H5Dcreate2(fid, F81_DATASETNAME, H5T_STD_U32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ for(i = 0; i < F81_ZDIM; i++)
+ for(j = 0; j < F81_YDIM; j++)
+ for(k = 0; k < F81_XDIM; k++)
+ for(l = 0; l < F81_WDIM; l++)
+ dset1[i][j][k][l] = i*F81_YDIM*F81_XDIM*F81_WDIM + j*F81_XDIM*F81_WDIM + k*F81_WDIM + l;
+
+ H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset1);
+ H5Sclose(space);
+ H5Dclose(dataset);
+
+ H5Fclose(fid);
+}
+
/*-------------------------------------------------------------------------
* Function: main
@@ -9802,6 +9845,8 @@ int main(void)
gent_intsattrs();
gent_bitnopaquefields();
+ gent_intsfourdims();
+
return 0;
}
diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in
index 267ac44..6d481c6 100644
--- a/tools/h5dump/testh5dump.sh.in
+++ b/tools/h5dump/testh5dump.sh.in
@@ -133,6 +133,7 @@ $SRC_H5DUMP_TESTFILES/tgrp_comments.h5
$SRC_H5DUMP_TESTFILES/thlink.h5
$SRC_H5DUMP_TESTFILES/thyperslab.h5
$SRC_H5DUMP_TESTFILES/tintsattrs.h5
+$SRC_H5DUMP_TESTFILES/tints4dims.h5
$SRC_H5DUMP_TESTFILES/tlarge_objname.h5
#$SRC_H5DUMP_TESTFILES/tldouble.h5
$SRC_H5DUMP_TESTFILES/tlonglinks.h5
@@ -265,6 +266,12 @@ $SRC_H5DUMP_TESTFILES/tindicessub2.ddl
$SRC_H5DUMP_TESTFILES/tindicessub3.ddl
$SRC_H5DUMP_TESTFILES/tindicessub4.ddl
$SRC_H5DUMP_TESTFILES/tindicesyes.ddl
+$SRC_H5DUMP_TESTFILES/tints4dims.ddl
+$SRC_H5DUMP_TESTFILES/tints4dimsBlock2.ddl
+$SRC_H5DUMP_TESTFILES/tints4dimsBlockEq.ddl
+$SRC_H5DUMP_TESTFILES/tints4dimsCount2.ddl
+$SRC_H5DUMP_TESTFILES/tints4dimsCountEq.ddl
+$SRC_H5DUMP_TESTFILES/tints4dimsStride2.ddl
$SRC_H5DUMP_TESTFILES/tintsattrs.ddl
$SRC_H5DUMP_TESTFILES/tlarge_objname.ddl
#$SRC_H5DUMP_TESTFILES/tldouble.ddl
@@ -1106,6 +1113,12 @@ TOOLTEST tall-5s.ddl --enable-error-stack -d "/g1/g1.1/dset1.1.2[0;2;10;]" tall.
TOOLTEST tdset-3s.ddl --enable-error-stack -d "/dset1[1,1;;;]" tdset.h5
TOOLTEST tno-subset.ddl --enable-error-stack --no-compact-subset -d "AHFINDERDIRECT::ah_centroid_t[0] it=0 tl=0" tno-subset.h5
+TOOLTEST tints4dimsCount2.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -c 2,2,2,2 tints4dims.h5
+TOOLTEST tints4dimsBlock2.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -c 1,1,1,1 -k 2,2,2,2 tints4dims.h5
+TOOLTEST tints4dimsStride2.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,2,2 -c 2,2,2,2 tints4dims.h5
+TOOLTEST tints4dimsCountEq.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,1,1 -k 1,2,1,1 -c 2,2,4,4 tints4dims.h5
+TOOLTEST tints4dimsBlockEq.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,1,1 -c 2,2,1,1 -k 1,2,4,4 tints4dims.h5
+
# test printing characters in ASCII instead of decimal
TOOLTEST tchar1.ddl --enable-error-stack -r tchar.h5
diff --git a/tools/h5dump/testh5dumpvds.sh.in b/tools/h5dump/testh5dumpvds.sh.in
index b15606f..850c03a 100644
--- a/tools/h5dump/testh5dumpvds.sh.in
+++ b/tools/h5dump/testh5dumpvds.sh.in
@@ -98,6 +98,14 @@ $SRC_H5DUMP_TESTFILES/vds/5_a.h5
$SRC_H5DUMP_TESTFILES/vds/5_b.h5
$SRC_H5DUMP_TESTFILES/vds/5_c.h5
$SRC_H5DUMP_TESTFILES/vds/5_vds.h5
+$SRC_H5DUMP_TESTFILES/vds/a.h5
+$SRC_H5DUMP_TESTFILES/vds/b.h5
+$SRC_H5DUMP_TESTFILES/vds/c.h5
+$SRC_H5DUMP_TESTFILES/vds/d.h5
+$SRC_H5DUMP_TESTFILES/vds/vds-percival-unlim-maxmin.h5
+$SRC_H5DUMP_TESTFILES/vds/f-0.h5
+$SRC_H5DUMP_TESTFILES/vds/f-3.h5
+$SRC_H5DUMP_TESTFILES/vds/vds-eiger.h5
"
LIST_OTHER_TEST_FILES="
@@ -113,6 +121,11 @@ $SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_1.ddl
$SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_2.ddl
$SRC_H5DUMP_TESTFILES/vds/tvds_layout-4.ddl
$SRC_H5DUMP_TESTFILES/vds/tvds_layout-5.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds-first.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds-gap1.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds-gap2.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds_layout-eiger.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds_layout-maxmin.ddl
"
LIST_ERROR_TEST_FILES="
@@ -480,6 +493,9 @@ if test $USE_FILTER_DEFLATE = "yes" ; then
TOOLTEST tvds-3_2.ddl --enable-error-stack 3_2_vds.h5
TOOLTEST tvds-4.ddl --enable-error-stack 4_vds.h5
TOOLTEST tvds-5.ddl --enable-error-stack 5_vds.h5
+ TOOLTEST vds-first.ddl --vds-view-first-missing --enable-error-stack vds-percival-unlim-maxmin.h5
+ TOOLTEST vds-gap1.ddl -d /VDS-Eiger --vds-gap-size=1 --enable-error-stack vds-eiger.h5
+ TOOLTEST vds-gap2.ddl --vds-gap-size=2 --enable-error-stack vds-eiger.h5
fi
# Layout read
@@ -490,6 +506,8 @@ if test $USE_FILTER_DEFLATE = "yes" ; then
TOOLTEST tvds_layout-3_2.ddl -p --enable-error-stack 3_2_vds.h5
TOOLTEST tvds_layout-4.ddl -p --enable-error-stack 4_vds.h5
TOOLTEST tvds_layout-5.ddl -p --enable-error-stack 5_vds.h5
+ TOOLTEST vds_layout-eiger.ddl -p --enable-error-stack vds-eiger.h5
+ TOOLTEST vds_layout-maxmin.ddl -p --enable-error-stack vds-percival-unlim-maxmin.h5
fi
# Clean up temporary files/directories