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author | Quincey Koziol <koziol@hdfgroup.org> | 2006-01-23 20:46:34 (GMT) |
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committer | Quincey Koziol <koziol@hdfgroup.org> | 2006-01-23 20:46:34 (GMT) |
commit | 56e3f667d6e3e265ac044f3faf1b17137556e0f7 (patch) | |
tree | 70f04688f0596ca5be22dd4e9260f601ee77bbd8 /tools/h5dump | |
parent | b09695738a95d8f1fb823894d1880f28dc16669c (diff) | |
download | hdf5-56e3f667d6e3e265ac044f3faf1b17137556e0f7.zip hdf5-56e3f667d6e3e265ac044f3faf1b17137556e0f7.tar.gz hdf5-56e3f667d6e3e265ac044f3faf1b17137556e0f7.tar.bz2 |
[svn-r11886] Purpose:
Code cleanup
Description:
Check in some of the code cleanups from working on the external link
support. (This doesn't include any of the external link features)
Platforms tested:
FreeBSD 4.11 (sleipnir)
Mac OSX.4 (amazon)
Linux 2.4
Diffstat (limited to 'tools/h5dump')
-rw-r--r-- | tools/h5dump/h5dump.c | 1467 | ||||
-rw-r--r-- | tools/h5dump/h5dump.h | 129 | ||||
-rw-r--r-- | tools/h5dump/h5dumpgentest.c | 2 |
3 files changed, 836 insertions, 762 deletions
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index 2a99989..8a5e192 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -59,7 +59,7 @@ static char *prefix; static const char *driver = NULL; /* The driver to open the file with. */ -static const dump_header *dump_header_format; +static const h5dump_header_t *dump_header_format; /* things to display or which are set via command line parameters */ static int display_all = TRUE; @@ -86,21 +86,20 @@ static int doxml = 0; static int useschema = 1; static const char *xml_dtd_uri = NULL; static const char *xmlnsprefix="hdf5:"; +static int indent; /*how far in to indent the line */ /** end XML **/ /* internal functions */ -static hid_t h5_fileaccess(void); -static void dump_oid(hid_t oid); -static void print_enum(hid_t type); -static herr_t dump_all(hid_t group, const char *name, void *op_data); -#ifdef LATER -static void check_compression(hid_t); -#endif /* LATER */ -static int xml_name_to_XID(const char *, char *, int , int ); -static void init_prefix(char **prfx, size_t prfx_len); - -static h5dump_t dataformat = { +static hid_t h5_fileaccess(void); +static void dump_oid(hid_t oid); +static void print_enum(hid_t type); +static herr_t dump_all(hid_t group, const char *name, void *op_data); +static int xml_name_to_XID(const char *, char *, int , int ); +static void init_prefix(char **prfx, size_t prfx_len); +static void add_prefix(char **prfx, size_t *prfx_len, const char *name); + +static h5tool_format_t dataformat = { 0, /*raw */ "", /*fmt_raw */ @@ -184,7 +183,7 @@ static h5dump_t dataformat = { * * This table only affects XML output. */ -static h5dump_t xml_dataformat = { +static h5tool_format_t xml_dataformat = { 0, /*raw */ "", /*fmt_raw */ @@ -255,13 +254,13 @@ static h5dump_t xml_dataformat = { /** XML **/ -static const dump_header standardformat = { +static const h5dump_header_t standardformat = { "standardformat", /*name */ "HDF5", /*fileebgin */ "", /*fileend */ SUPER_BLOCK, /*bootblockbegin */ "", /*bootblockend */ - GROUPNAME, /*groupbegin */ + GROUP, /*groupbegin */ "", /*groupend */ DATASET, /*datasetbegin */ "", /*datasetend */ @@ -1335,244 +1334,263 @@ static herr_t dump_all(hid_t group, const char *name, void * op_data) { hid_t obj; - char *targbuf, *tmp = NULL; + char *obj_path = NULL; /* Full path of object */ H5G_stat_t statbuf; herr_t ret = SUCCEED; - H5Gget_objinfo(group, name, FALSE, &statbuf); + /* Stat the object */ + if(H5Gget_objinfo(group, name, FALSE, &statbuf) < 0) { + error_msg(progname, "unable to get object information\n"); + d_status = EXIT_FAILURE; + ret = FAIL; + goto done; + } /* end if */ if (*(int *)op_data != H5G_UNKNOWN && statbuf.type != *(int *) op_data) goto done; - tmp = malloc(strlen(prefix) + strlen(name) + 2); - strcpy(tmp, prefix); + /* Build the object's path name */ + obj_path = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); + HDassert(obj_path); + HDstrcpy(obj_path, prefix); + HDstrcat(obj_path, "/"); + HDstrcat(obj_path, name); switch (statbuf.type) { - case H5G_LINK: - indentation(indent); - targbuf = malloc(statbuf.u.slink.linklen); + case H5G_LINK: + { + char *targbuf; - if (!doxml) { - begin_obj(dump_header_format->softlinkbegin, name, - dump_header_format->softlinkblockbegin); - indentation(indent + COL); - } + indentation(indent); + targbuf = HDmalloc(statbuf.u.slink.linklen); + HDassert(targbuf); - if (H5Gget_linkval(group, name, statbuf.u.slink.linklen, targbuf) < 0) { - error_msg(progname, "unable to get link value\n"); - d_status = EXIT_FAILURE; - ret = FAIL; - } else { - /* print the value of a soft link */ - if (!doxml) { - /* Standard DDL: no modification */ - printf("LINKTARGET \"%s\"\n", targbuf); - } else { - /* XML */ - char *linkxid = malloc(100); - char *parentxid = malloc(100); - char *targetxid = malloc(100); - char *t_prefix = xml_escape_the_name(strcmp(prefix,"") ? prefix : "/"); - char *t_name = xml_escape_the_name(name); - char *t_targbuf = xml_escape_the_name(targbuf); - char *tmp2, *t_tmp; - int res; - - tmp2 = malloc(strlen(prefix) + statbuf.u.slink.linklen + 1); - strcpy(tmp2, prefix); - - if (targbuf && targbuf[0] == '/') - strcpy(tmp2, targbuf); - else - strcat(strcat(tmp2, "/"), targbuf); - - t_tmp = xml_escape_the_name(strcat(strcat(tmp, "/"), name)); - xml_name_to_XID(t_tmp,linkxid,100,1); - xml_name_to_XID(prefix,parentxid,100,1); - - res = xml_name_to_XID(tmp2,targetxid,100,0); - - if (res == 0) { - /* target obj found */ - printf("<%sSoftLink LinkName=\"%s\" " - "OBJ-XID=\"%s\" " - "H5SourcePath=\"%s\" " + if (!doxml) { + begin_obj(dump_header_format->softlinkbegin, name, + dump_header_format->softlinkblockbegin); + indentation(indent + COL); + } + + if (H5Gget_linkval(group, name, statbuf.u.slink.linklen, targbuf) < 0) { + error_msg(progname, "unable to get link value\n"); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { + /* print the value of a soft link */ + if (!doxml) { + /* Standard DDL: no modification */ + printf("LINKTARGET \"%s\"\n", targbuf); + } else { + /* XML */ + char linkxid[100]; + char parentxid[100]; + char targetxid[100]; + char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); + char *t_name = xml_escape_the_name(name); + char *t_targbuf = xml_escape_the_name(targbuf); + char *t_obj_path = xml_escape_the_name(obj_path); + char *t_link_path; + int res; + + t_link_path = HDmalloc(HDstrlen(prefix) + statbuf.u.slink.linklen + 1); + if(targbuf[0] == '/') + HDstrcpy(t_link_path, targbuf); + else { + HDstrcpy(t_link_path, prefix); + HDstrcat(HDstrcat(t_link_path, "/"), targbuf); + } /* end else */ + + /* Create OBJ-XIDs for the parent and object */ + xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1); + xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1); + + /* Try to create an OBJ-XID for the object pointed to */ + res = xml_name_to_XID(t_link_path, targetxid, sizeof(targetxid), 0); + if (res == 0) { + /* target obj found */ + printf("<%sSoftLink LinkName=\"%s\" " + "OBJ-XID=\"%s\" " + "H5SourcePath=\"%s\" " "TargetPath=\"%s\" TargetObj=\"%s\" " - "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", - xmlnsprefix, - t_name, - linkxid, - t_tmp, - t_targbuf, targetxid, - parentxid, t_prefix); - free(targetxid); - } else { - /* dangling link -- omit from xml attributes */ - printf("<%sSoftLink LinkName=\"%s\" " - "OBJ-XID=\"%s\" " - "H5SourcePath=\"%s\" " + "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", + xmlnsprefix, + t_name, /* LinkName */ + linkxid, /* OBJ-XID */ + t_obj_path, /* H5SourcePath */ + t_targbuf, /* TargetPath */ + targetxid, /* TargetObj */ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + } else { + /* dangling link -- omit from xml attributes */ + printf("<%sSoftLink LinkName=\"%s\" " + "OBJ-XID=\"%s\" " + "H5SourcePath=\"%s\" " "TargetPath=\"%s\" " - "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", - xmlnsprefix, - t_name, - linkxid, - t_tmp, - t_targbuf, - parentxid, t_prefix); - } + "Parents=\"%s\" H5ParentPaths=\"%s\" />\n", + xmlnsprefix, + t_name, /* LinkName */ + linkxid, /* OBJ-XID */ + t_obj_path, /* H5SourcePath */ + t_targbuf, /* TargetPath */ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + } - free(t_name); - free(t_targbuf); - free(t_tmp); - free(tmp2); - free(linkxid); - free(parentxid); - } - } + HDfree(t_prefix); + HDfree(t_name); + HDfree(t_targbuf); + HDfree(t_obj_path); + HDfree(t_link_path); + } + } - if (!doxml) { - indentation(indent); - end_obj(dump_header_format->softlinkend, - dump_header_format->softlinkblockend); - } + if (!doxml) { + indentation(indent); + end_obj(dump_header_format->softlinkend, + dump_header_format->softlinkblockend); + } - free(targbuf); - break; + HDfree(targbuf); + break; + } - case H5G_GROUP: - if ((obj = H5Gopen(group, name)) < 0) { - error_msg(progname, "unable to dump group \"%s\"\n", name); - d_status = EXIT_FAILURE; - ret = FAIL; - } else { - size_t new_len = strlen(prefix) + strlen(name) + 2; + case H5G_GROUP: + if ((obj = H5Gopen(group, name)) < 0) { + error_msg(progname, "unable to dump group \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { + char *old_prefix; /* Pointer to previous prefix */ - if (prefix_len <= new_len) { - prefix_len = new_len + 1; - prefix = realloc(prefix, prefix_len); - } + /* Keep copy of prefix before iterating into group */ + old_prefix = HDstrdup(prefix); + HDassert(old_prefix); - strcat(strcat(prefix, "/"), name); - dump_function_table->dump_group_function(obj, name); - strcpy(prefix, tmp); - H5Gclose(obj); - } + /* Append group name to prefix */ + add_prefix(&prefix, &prefix_len, name); - break; + /* Iterate into group */ + dump_function_table->dump_group_function(obj, name); - case H5G_DATASET: - if ((obj = H5Dopen(group, name)) >= 0) { - /* hard link */ - H5Gget_objinfo(obj, ".", TRUE, &statbuf); + /* Restore old prefix name */ + HDstrcpy(prefix, old_prefix); + HDfree(old_prefix); - if (statbuf.u.obj.nlink > 1) { - obj_t *found_obj; /* Found object */ + /* Close group */ + H5Gclose(obj); + } - found_obj = search_obj(dset_table, statbuf.u.obj.objno); + break; - if (found_obj == NULL) { - indentation(indent); - begin_obj(dump_header_format->datasetbegin, name, - dump_header_format->datasetblockbegin); - indentation(indent + COL); - error_msg(progname, - "internal error (file %s:line %d)\n", - __FILE__, __LINE__); - indentation(indent); - end_obj(dump_header_format->datasetend, - dump_header_format->datasetblockend); - d_status = EXIT_FAILURE; - ret = FAIL; - H5Dclose(obj); - goto done; - } else if (found_obj->displayed) { - indentation(indent); + case H5G_DATASET: + if ((obj = H5Dopen(group, name)) >= 0) { + /* hard link */ + H5Gget_objinfo(obj, ".", TRUE, &statbuf); + + if (statbuf.u.obj.nlink > 1) { + obj_t *found_obj; /* Found object */ + + found_obj = search_obj(dset_table, statbuf.u.obj.objno); + + if (found_obj == NULL) { + indentation(indent); + begin_obj(dump_header_format->datasetbegin, name, + dump_header_format->datasetblockbegin); + indentation(indent + COL); + error_msg(progname, + "internal error (file %s:line %d)\n", + __FILE__, __LINE__); + indentation(indent); + end_obj(dump_header_format->datasetend, + dump_header_format->datasetblockend); + d_status = EXIT_FAILURE; + ret = FAIL; + H5Dclose(obj); + goto done; + } else if (found_obj->displayed) { + indentation(indent); + + if (!doxml) { + begin_obj(dump_header_format->datasetbegin, name, + dump_header_format->datasetblockbegin); + indentation(indent + COL); + printf("%s \"%s\"\n", HARDLINK, found_obj->objname); + indentation(indent); + end_obj(dump_header_format->datasetend, + dump_header_format->datasetblockend); + } else { + /* the XML version */ + char *t_obj_path = xml_escape_the_name(obj_path); + char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); + char *t_name = xml_escape_the_name(name); + char dsetxid[100]; + char parentxid[100]; + char pointerxid[100]; + + /* Create OBJ-XIDs for the parent and object */ + xml_name_to_XID(obj_path, dsetxid, sizeof(dsetxid), 1); + xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1); + + printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" " + "H5Path=\"%s\" Parents=\"%s\" " + "H5ParentPaths=\"%s\">\n", + xmlnsprefix, + t_name, /* Dataset Name */ + dsetxid, get_next_xid(), /* OBJ-XID */ + t_obj_path, /* H5Path */ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + + indentation(indent + COL); + xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1); + printf("<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n", + xmlnsprefix, + pointerxid,t_obj_path); + indentation(indent); + printf("</%sDataset>\n", xmlnsprefix); + + HDfree(t_name); + HDfree(t_obj_path); + HDfree(t_prefix); + } - if (!doxml) { - begin_obj(dump_header_format->datasetbegin, name, - dump_header_format->datasetblockbegin); - indentation(indent + COL); - printf("%s \"%s\"\n", HARDLINK, found_obj->objname); - indentation(indent); - end_obj(dump_header_format->datasetend, - dump_header_format->datasetblockend); - } else { - /* the XML version */ - char *t_tmp; - char *t_prefix; - char *t_name; - char *dsetxid = malloc(100); - char *parentxid = malloc(100); - char *pointerxid = malloc(100); - char *tx_tmp = malloc(strlen(tmp)+strlen(name)+1); - strcpy(tx_tmp,tmp); - t_tmp = xml_escape_the_name(strcat(strcat(tx_tmp, "/"), name)); - t_prefix = xml_escape_the_name(prefix); - t_name = xml_escape_the_name(name); - xml_name_to_XID( strcat(strcat(tmp,"/"),name), dsetxid,100,1); - xml_name_to_XID( prefix ,parentxid,100,1); - - printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" " - "H5Path=\"%s\" Parents=\"%s\" " - "H5ParentPaths=\"%s\">\n", - xmlnsprefix, - t_name, dsetxid, get_next_xid(), - t_tmp, parentxid, - (strcmp(prefix, "") ? t_prefix : "/")); - - indentation(indent + COL); - xml_name_to_XID(found_obj->objname,pointerxid,100,1); - printf("<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n", - xmlnsprefix, - pointerxid,t_tmp); - indentation(indent); - printf("</%sDataset>\n", xmlnsprefix); - - free(t_name); - free(dsetxid); - free(parentxid); - free(pointerxid); - free(t_tmp); - free(tx_tmp); - free(t_prefix); - } - - H5Dclose(obj); - goto done; - } else { - found_obj->displayed = TRUE; + H5Dclose(obj); + goto done; + } else { + found_obj->displayed = TRUE; + } + } /* end if */ - } - } + dump_function_table->dump_dataset_function(obj, name, NULL); + H5Dclose(obj); + } else { + error_msg(progname, "unable to dump dataset \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; + } + break; - dump_function_table->dump_dataset_function(obj, name, NULL); - H5Dclose(obj); - } else { - error_msg(progname, "unable to dump dataset \"%s\"\n", name); - d_status = EXIT_FAILURE; - ret = FAIL; - } - break; + case H5G_TYPE: + if ((obj = H5Topen(group, name)) < 0) { + error_msg(progname, "unable to dump data type \"%s\"\n", name); + d_status = EXIT_FAILURE; + ret = FAIL; + } else { + dump_function_table->dump_named_datatype_function(obj, name); + H5Tclose(obj); + } + break; - case H5G_TYPE: - if ((obj = H5Topen(group, name)) < 0) { - error_msg(progname, "unable to dump data type \"%s\"\n", name); - d_status = EXIT_FAILURE; + default: + error_msg(progname, "unknown object \"%s\"\n", name); + d_status = EXIT_FAILURE; ret = FAIL; - } else { - dump_function_table->dump_named_datatype_function(obj, name); - H5Tclose(obj); - } - break; - - default: - error_msg(progname, "unknown object \"%s\"\n", name); - d_status = EXIT_FAILURE; - ret = FAIL; } done: - free(tmp); + if(obj_path) + HDfree(obj_path); return ret; } @@ -1630,19 +1648,19 @@ dump_group(hid_t gid, const char *name) char type_name[1024], *tmp; int xtype = H5G_UNKNOWN; /* dump all */ - tmp = malloc(strlen(prefix) + strlen(name) + 2); - strcpy(tmp, prefix); + tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); + HDstrcpy(tmp, prefix); indentation(indent); begin_obj(dump_header_format->groupbegin, name, dump_header_format->groupblockbegin); indent += COL; if (display_oid) - dump_oid(gid); + dump_oid(gid); dump_comment(gid); - if (!strcmp(name, "/") && unamedtype) { + if (!HDstrcmp(name, "/") && unamedtype) { unsigned u; /* Local index variable */ /* dump unamed type in root group */ @@ -1718,33 +1736,33 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) dump_dataspace(space); if (display_oid) - dump_oid(did); + dump_oid(did); if (display_dcpl) - dump_dcpl(dcpl_id, type, did); + dump_dcpl(dcpl_id, type, did); if (display_data) switch (H5Tget_class(type)) { - case H5T_TIME: - indentation(indent + COL); - printf("DATA{ not yet implemented.}\n"); - break; + case H5T_TIME: + indentation(indent + COL); + printf("DATA{ not yet implemented.}\n"); + break; - case H5T_INTEGER: - case H5T_FLOAT: - case H5T_STRING: - case H5T_BITFIELD: - case H5T_OPAQUE: - case H5T_COMPOUND: - case H5T_REFERENCE: - case H5T_ENUM: - case H5T_VLEN: - case H5T_ARRAY: - dump_data(did, DATASET_DATA, sset, display_ai); - break; + case H5T_INTEGER: + case H5T_FLOAT: + case H5T_STRING: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_COMPOUND: + case H5T_REFERENCE: + case H5T_ENUM: + case H5T_VLEN: + case H5T_ARRAY: + dump_data(did, DATASET_DATA, sset, display_ai); + break; - default: - break; + default: + break; } indent += COL; @@ -1775,7 +1793,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) static void dump_dims(hsize_t *s, int dims) { - register int i; + int i; for (i = 0; i < dims; i++) { printf("%u", (unsigned int)s[i]); @@ -1864,7 +1882,7 @@ dump_subsetting_header(struct subset_t *sset, int dims) static void dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex) { - h5dump_t *outputformat = &dataformat; + h5tool_format_t *outputformat = &dataformat; int status = -1; void *buf; hid_t space, type, p_type; @@ -1878,12 +1896,11 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex) outputformat->do_escape=display_escape; /* print the matrix indices */ outputformat->pindex=pindex; - if (outputformat->pindex) - { - outputformat->idx_fmt = "(%s): "; - outputformat->idx_n_fmt = "%lu"; - outputformat->idx_sep = ","; - outputformat->line_pre = "%s"; + if (outputformat->pindex) { + outputformat->idx_fmt = "(%s): "; + outputformat->idx_n_fmt = "%lu"; + outputformat->idx_sep = ","; + outputformat->line_pre = "%s"; } indent += COL; @@ -1914,7 +1931,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex) if (obj_data == DATASET_DATA) { hid_t f_type = H5Dget_type(obj_id); char string_prefix[64]; - h5dump_t string_dataformat; + h5tool_format_t string_dataformat; if (display_char && H5Tget_size(f_type) == 1 && H5Tget_class(f_type) == H5T_INTEGER) { /* @@ -1954,7 +1971,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int pindex) status = SUCCEED; } else { char string_prefix[64]; - h5dump_t string_dataformat; + h5tool_format_t string_dataformat; type = H5Aget_type(obj_id); p_type = h5tools_get_native_type(type); @@ -2062,15 +2079,15 @@ dump_oid(hid_t oid) static void dump_comment(hid_t obj_id) { - char comment[50]; + char comment[50]; - comment[0] = '\0'; - H5Gget_comment(obj_id, ".", sizeof(comment), comment); + comment[0] = '\0'; + H5Gget_comment(obj_id, ".", sizeof(comment), comment); - if (comment[0]) { - indentation(indent); - printf("COMMENT \"%s\"\n", comment); - } + if (comment[0]) { + indentation(indent); + printf("COMMENT \"%s\"\n", comment); + } } @@ -2094,7 +2111,7 @@ static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id) size_t size; void *buf=NULL; hsize_t nelmts=1; - h5dump_t *outputformat = &dataformat; + h5tool_format_t *outputformat = &dataformat; hid_t n_type; memset(&ctx, 0, sizeof(ctx)); @@ -2113,7 +2130,6 @@ static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id) if (buf) free (buf); - } @@ -2131,321 +2147,303 @@ static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id) static void dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id) { - int nfilters; /* number of filters */ - unsigned filt_flags; /* filter flags */ - H5Z_filter_t filtn; /* filter identification number */ - unsigned cd_values[20]; /* filter client data values */ - size_t cd_nelmts; /* filter client number of values */ - char f_name[256]; /* filter name */ - unsigned szip_options_mask; - unsigned szip_pixels_per_block; - hsize_t chsize[64]; /* chunk size in elements */ - int rank; /* rank */ - char name[256]; /* external file name */ - off_t offset; /* offset of external file */ - hsize_t size; /* size of external file */ - H5D_fill_value_t fvstatus; - H5D_alloc_time_t at; - H5D_fill_time_t ft; - hsize_t storage_size; - haddr_t ioffset; - int i, next; - unsigned j; - - storage_size=H5Dget_storage_size(obj_id); - ioffset=H5Dget_offset(obj_id); - next=H5Pget_external_count(dcpl_id); - strcpy(f_name,"\0"); - -/*------------------------------------------------------------------------- - * STORAGE_LAYOUT - *------------------------------------------------------------------------- - */ - indentation(indent + COL); - printf("%s %s\n", STORAGE_LAYOUT, BEGIN); - - if (H5D_CHUNKED == H5Pget_layout(dcpl_id)) - { - /*start indent */ - indent += COL; - indentation(indent + COL); - printf("%s ", CHUNKED); - rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize); - HDfprintf(stdout,"%s %Hu", dump_header_format->dataspacedimbegin, chsize[0]); - for ( i=1; i<rank; i++) - HDfprintf(stdout, ", %Hu", chsize[i]); - printf(" %s\n", dump_header_format->dataspacedimend); - indentation(indent + COL); - HDfprintf(stdout, "SIZE %Hu\n ", storage_size); - /*end indent */ - indent -= COL; - indentation(indent + COL); - printf("%s\n",END); - } - else if (H5D_COMPACT == H5Pget_layout(dcpl_id)) - { - /*start indent */ - indent += COL; - indentation(indent + COL); - printf("%s\n", COMPACT); - indentation(indent + COL); - HDfprintf(stdout, "SIZE %Hu\n", storage_size); - /*end indent */ - indent -= COL; - indentation(indent + COL); - printf("%s\n",END); - } - else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl_id)) - { - /*------------------------------------------------------------------------- - * EXTERNAL_FILE - *------------------------------------------------------------------------- - */ - if (next) - { - /*start indent */ - indent += COL; - indentation(indent + COL); - printf("%s\n", CONTIGUOUS); - indentation(indent + COL); - printf("%s %s\n", EXTERNAL, BEGIN); - /*start indent */ - indent += COL; - for ( j=0; j<(unsigned)next; j++) { - H5Pget_external(dcpl_id,j,sizeof(name),name,&offset,&size); + int nfilters; /* number of filters */ + unsigned filt_flags; /* filter flags */ + H5Z_filter_t filtn; /* filter identification number */ + unsigned cd_values[20]; /* filter client data values */ + size_t cd_nelmts; /* filter client number of values */ + char f_name[256]; /* filter name */ + unsigned szip_options_mask; + unsigned szip_pixels_per_block; + hsize_t chsize[64]; /* chunk size in elements */ + int rank; /* rank */ + char name[256]; /* external file name */ + off_t offset; /* offset of external file */ + hsize_t size; /* size of external file */ + H5D_fill_value_t fvstatus; + H5D_alloc_time_t at; + H5D_fill_time_t ft; + hsize_t storage_size; + haddr_t ioffset; + int i, next; + unsigned j; + + storage_size=H5Dget_storage_size(obj_id); + ioffset=H5Dget_offset(obj_id); + next=H5Pget_external_count(dcpl_id); + strcpy(f_name,"\0"); + + /*------------------------------------------------------------------------- + * STORAGE_LAYOUT + *------------------------------------------------------------------------- + */ indentation(indent + COL); - HDfprintf(stdout,"FILENAME %s SIZE %Hu OFFSET %ld\n",name,size,offset); - } - /*end indent */ - indent -= COL; - indentation(indent + COL); - printf("%s\n",END); - /*end indent */ - indent -= COL; - indentation(indent + COL); - printf("%s\n",END); - } - else - { - /*start indent */ - indent += COL; - indentation(indent + COL); - printf("%s\n", CONTIGUOUS); - indentation(indent + COL); - HDfprintf(stdout,"SIZE %Hu\n", storage_size); - indentation(indent + COL); - HDfprintf(stdout,"OFFSET %Hu\n", ioffset); - /*end indent */ - indent -= COL; - indentation(indent + COL); - printf("%s\n",END); - } - } -/*------------------------------------------------------------------------- - * FILTERS - *------------------------------------------------------------------------- - */ - nfilters = H5Pget_nfilters(dcpl_id); + printf("%s %s\n", STORAGE_LAYOUT, BEGIN); + + if (H5D_CHUNKED == H5Pget_layout(dcpl_id)) { + /*start indent */ + indent += COL; + indentation(indent + COL); + printf("%s ", CHUNKED); + + rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize); + HDfprintf(stdout,"%s %Hu", dump_header_format->dataspacedimbegin, chsize[0]); + for ( i=1; i<rank; i++) + HDfprintf(stdout, ", %Hu", chsize[i]); + printf(" %s\n", dump_header_format->dataspacedimend); + indentation(indent + COL); + HDfprintf(stdout, "SIZE %Hu\n ", storage_size); + + /*end indent */ + indent -= COL; + indentation(indent + COL); + printf("%s\n",END); + } + else if (H5D_COMPACT == H5Pget_layout(dcpl_id)) { + /*start indent */ + indent += COL; + indentation(indent + COL); + printf("%s\n", COMPACT); + + indentation(indent + COL); + HDfprintf(stdout, "SIZE %Hu\n", storage_size); + + /*end indent */ + indent -= COL; + indentation(indent + COL); + printf("%s\n",END); + } + else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl_id)) { + /*------------------------------------------------------------------------- + * EXTERNAL_FILE + *------------------------------------------------------------------------- + */ + if (next) { + /*start indent */ + indent += COL; + indentation(indent + COL); + printf("%s\n", CONTIGUOUS); + + indentation(indent + COL); + printf("%s %s\n", EXTERNAL, BEGIN); + + /*start indent */ + indent += COL; + for ( j=0; j<(unsigned)next; j++) { + H5Pget_external(dcpl_id,j,sizeof(name),name,&offset,&size); + indentation(indent + COL); + HDfprintf(stdout,"FILENAME %s SIZE %Hu OFFSET %ld\n",name,size,offset); + } + /*end indent */ + indent -= COL; + indentation(indent + COL); + printf("%s\n",END); + + /*end indent */ + indent -= COL; + indentation(indent + COL); + printf("%s\n",END); + } + else { + /*start indent */ + indent += COL; + indentation(indent + COL); + printf("%s\n", CONTIGUOUS); - indentation(indent + COL); - printf("%s %s\n", FILTERS, BEGIN); - indent += COL; + indentation(indent + COL); + HDfprintf(stdout,"SIZE %Hu\n", storage_size); + indentation(indent + COL); + HDfprintf(stdout,"OFFSET %Hu\n", ioffset); + + /*end indent */ + indent -= COL; + indentation(indent + COL); + printf("%s\n",END); + } + } + /*------------------------------------------------------------------------- + * FILTERS + *------------------------------------------------------------------------- + */ + nfilters = H5Pget_nfilters(dcpl_id); - if (nfilters) - { - for (i=0; i<nfilters; i++) - { - cd_nelmts = NELMTS(cd_values); + indentation(indent + COL); + printf("%s %s\n", FILTERS, BEGIN); + indent += COL; + + if (nfilters) { + for (i=0; i<nfilters; i++) { + cd_nelmts = NELMTS(cd_values); #ifdef H5_WANT_H5_V1_6_COMPAT - filtn = H5Pget_filter(dcpl_id, - (unsigned)i, - &filt_flags, - &cd_nelmts, - cd_values, - sizeof(f_name), - f_name); + filtn = H5Pget_filter(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts, + cd_values, sizeof(f_name), f_name); #else - filtn = H5Pget_filter(dcpl_id, - (unsigned)i, - &filt_flags, - &cd_nelmts, - cd_values, - sizeof(f_name), - f_name, - NULL); + filtn = H5Pget_filter(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts, + cd_values, sizeof(f_name), f_name, NULL); #endif /* H5_WANT_H5_V1_6_COMPAT */ - switch (filtn) - { - case H5Z_FILTER_DEFLATE: + switch (filtn) { + case H5Z_FILTER_DEFLATE: + indentation(indent + COL); + printf("%s %s %s %d %s\n", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END); + break; + case H5Z_FILTER_SHUFFLE: + indentation(indent + COL); + printf("%s\n", SHUFFLE); + break; + case H5Z_FILTER_FLETCHER32: + indentation(indent + COL); + printf("%s\n", FLETCHER32); + break; + case H5Z_FILTER_SZIP: + { + szip_options_mask=cd_values[0];; + szip_pixels_per_block=cd_values[1]; + + indentation(indent + COL); + printf("%s %s\n",SZIP, BEGIN); + + /*start indent */ + indent += COL; + indentation(indent + COL); + printf("PIXELS_PER_BLOCK %d\n", szip_pixels_per_block); + + indentation(indent + COL); + if (szip_options_mask & H5_SZIP_CHIP_OPTION_MASK) + printf("MODE %s\n", "HARDWARE"); + else if (szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK) + printf("MODE %s\n", "K13"); + + indentation(indent + COL); + if (szip_options_mask & H5_SZIP_EC_OPTION_MASK) + printf("CODING %s\n", "ENTROPY"); + else if (szip_options_mask & H5_SZIP_NN_OPTION_MASK) + printf("CODING %s\n", "NEAREST NEIGHBOUR"); + + indentation(indent + COL); + if (szip_options_mask & H5_SZIP_LSB_OPTION_MASK) + printf("BYTE_ORDER %s\n", "LSB"); + else if (szip_options_mask & H5_SZIP_MSB_OPTION_MASK) + printf("BYTE_ORDER %s\n", "MSB"); + + indentation(indent + COL); + if (szip_options_mask & H5_SZIP_RAW_OPTION_MASK) + printf("HEADER %s\n", "RAW"); + + /*end indent */ + indent -= COL; + indentation(indent + COL); + printf("%s\n",END); + } + break; + case H5Z_FILTER_NBIT: + indentation(indent + COL); + printf("%s\n", NBIT); + break; + case H5Z_FILTER_SCALEOFFSET: + indentation(indent + COL); + printf("%s %s %s %d %s\n", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END); + break; + default: + indentation(indent + COL); + if (H5Zfilter_avail(filtn)) + printf("%s %s\n", "USER_REGISTERED_FILTER", BEGIN); + else + printf("%s %s\n", "UNKNOWN_FILTER", BEGIN); + /*start indent */ + indent += COL; + indentation(indent + COL); + printf("FILTER_ID %d\n", filtn); + if (f_name[0]!='\0') { + indentation(indent + COL); + printf("COMMENT %s\n", f_name); + } + if (cd_nelmts) { + indentation(indent + COL); + printf("%s %s ","PARAMS", BEGIN); + for (j=0; j<cd_nelmts; j++) + printf("%d ", cd_values[j]); + printf("%s\n", END); + } + break; + }/*switch*/ + } /*i*/ + }/*nfilters*/ + else { + indentation(indent + COL); + printf("NONE\n"); + } + indent -= COL; indentation(indent + COL); - printf("%s %s %s %d %s\n", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END); - break; - case H5Z_FILTER_SHUFFLE: + printf("%s\n",END); + + /*------------------------------------------------------------------------- + * FILLVALUE + *------------------------------------------------------------------------- + */ indentation(indent + COL); - printf("%s\n", SHUFFLE); - break; - case H5Z_FILTER_FLETCHER32: + printf("%s %s\n", FILLVALUE, BEGIN); + /*start indent */ + indent += COL; indentation(indent + COL); - printf("%s\n", FLETCHER32); - break; - case H5Z_FILTER_SZIP: - { - szip_options_mask=cd_values[0];; - szip_pixels_per_block=cd_values[1]; - - indentation(indent + COL); - printf("%s %s\n",SZIP, BEGIN); - - /*start indent */ - indent += COL; - indentation(indent + COL); - printf("PIXELS_PER_BLOCK %d\n", szip_pixels_per_block); - - indentation(indent + COL); - if (szip_options_mask & H5_SZIP_CHIP_OPTION_MASK) - printf("MODE %s\n", "HARDWARE"); - else if (szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK) - printf("MODE %s\n", "K13"); - - indentation(indent + COL); - if (szip_options_mask & H5_SZIP_EC_OPTION_MASK) - printf("CODING %s\n", "ENTROPY"); - else if (szip_options_mask & H5_SZIP_NN_OPTION_MASK) - printf("CODING %s\n", "NEAREST NEIGHBOUR"); - - indentation(indent + COL); - if (szip_options_mask & H5_SZIP_LSB_OPTION_MASK) - printf("BYTE_ORDER %s\n", "LSB"); - else if (szip_options_mask & H5_SZIP_MSB_OPTION_MASK) - printf("BYTE_ORDER %s\n", "MSB"); - - indentation(indent + COL); - if (szip_options_mask & H5_SZIP_RAW_OPTION_MASK) - printf("HEADER %s\n", "RAW"); - - /*end indent */ - indent -= COL; - indentation(indent + COL); - printf("%s\n",END); + printf("FILL_TIME "); + H5Pget_fill_time(dcpl_id, &ft); + switch ( ft ) { + case H5D_FILL_TIME_ALLOC: + printf("%s", "H5D_FILL_TIME_ALLOC\n"); + break; + case H5D_FILL_TIME_NEVER: + printf("%s", "H5D_FILL_TIME_NEVER\n"); + break; + case H5D_FILL_TIME_IFSET: + printf("%s", "H5D_FILL_TIME_IFSET\n"); + break; + default: + assert(0); + break; } - break; - case H5Z_FILTER_NBIT: indentation(indent + COL); - printf("%s\n", NBIT); - break; - case H5Z_FILTER_SCALEOFFSET: + printf("%s ", "VALUE "); + H5Pfill_value_defined(dcpl_id, &fvstatus); + if (fvstatus == H5D_FILL_VALUE_UNDEFINED) + printf("%s\n", "H5D_FILL_VALUE_UNDEFINED"); + else + dump_fill_value(dcpl_id,type_id,obj_id); + /* end indent */ + indent -= COL; indentation(indent + COL); - printf("%s %s %s %d %s\n", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END); - break; - default: + printf("\n"); indentation(indent + COL); - if (H5Zfilter_avail(filtn)) - printf("%s %s\n", "USER_REGISTERED_FILTER", BEGIN); - else - printf("%s %s\n", "UNKNOWN_FILTER", BEGIN); + printf("%s\n",END); + + /*------------------------------------------------------------------------- + * ALLOCATION_TIME + *------------------------------------------------------------------------- + */ + indentation(indent + COL); + printf("ALLOCATION_TIME %s\n",BEGIN); /*start indent */ indent += COL; indentation(indent + COL); - printf("FILTER_ID %d\n", filtn); - if (f_name[0]!='\0') { - indentation(indent + COL); - printf("COMMENT %s\n", f_name); - } - if (cd_nelmts) { - indentation(indent + COL); - printf("%s %s ","PARAMS", BEGIN); - for (j=0; j<cd_nelmts; j++) { - printf("%d ", cd_values[j]); - } - printf("%s\n", END); + H5Pget_alloc_time(dcpl_id, &at); + switch (at) { + case H5D_ALLOC_TIME_EARLY: + printf("%s", "H5D_ALLOC_TIME_EARLY\n"); + break; + case H5D_ALLOC_TIME_INCR: + printf("%s", "H5D_ALLOC_TIME_INCR\n"); + break; + case H5D_ALLOC_TIME_LATE: + printf("%s", "H5D_ALLOC_TIME_LATE\n"); + break; + default: + assert(0); + break; } - break; - }/*switch*/ - } /*i*/ - }/*nfilters*/ - else - { - indentation(indent + COL); - printf("NONE\n"); - } - indent -= COL; - indentation(indent + COL); - printf("%s\n",END); - -/*------------------------------------------------------------------------- - * FILLVALUE - *------------------------------------------------------------------------- - */ - indentation(indent + COL); - printf("%s %s\n", FILLVALUE, BEGIN); - /*start indent */ - indent += COL; - indentation(indent + COL); - printf("FILL_TIME "); - H5Pget_fill_time(dcpl_id, &ft); - switch ( ft ) - { - case H5D_FILL_TIME_ALLOC: - printf("%s", "H5D_FILL_TIME_ALLOC\n"); - break; - case H5D_FILL_TIME_NEVER: - printf("%s", "H5D_FILL_TIME_NEVER\n"); - break; - case H5D_FILL_TIME_IFSET: - printf("%s", "H5D_FILL_TIME_IFSET\n"); - break; - default: - assert(0); - break; - } - indentation(indent + COL); - printf("%s ", "VALUE "); - H5Pfill_value_defined(dcpl_id, &fvstatus); - if (fvstatus == H5D_FILL_VALUE_UNDEFINED) - { - printf("%s\n", "H5D_FILL_VALUE_UNDEFINED"); - } - else - { - dump_fill_value(dcpl_id,type_id,obj_id); - } - /* end indent */ - indent -= COL; - indentation(indent + COL); - printf("\n"); - indentation(indent + COL); - printf("%s\n",END); - -/*------------------------------------------------------------------------- - * ALLOCATION_TIME - *------------------------------------------------------------------------- - */ - indentation(indent + COL); - printf("ALLOCATION_TIME %s\n",BEGIN); - /*start indent */ - indent += COL; - indentation(indent + COL); - H5Pget_alloc_time(dcpl_id, &at); - switch (at) - { - case H5D_ALLOC_TIME_EARLY: - printf("%s", "H5D_ALLOC_TIME_EARLY\n"); - break; - case H5D_ALLOC_TIME_INCR: - printf("%s", "H5D_ALLOC_TIME_INCR\n"); - break; - case H5D_ALLOC_TIME_LATE: - printf("%s", "H5D_ALLOC_TIME_LATE\n"); - break; - default: - assert(0); - break; - } - /* end indent */ - indent -= COL; - indentation(indent + COL); - printf("%s\n",END); + /* end indent */ + indent -= COL; + indentation(indent + COL); + printf("%s\n",END); } /*------------------------------------------------------------------------- @@ -2464,103 +2462,87 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id) static void dump_fcpl(hid_t fid) { - hid_t fcpl; /* file creation property list ID */ - hid_t fapl; /* file access property list ID */ - hsize_t userblock; /* userblock size retrieved from FCPL */ - size_t off_size; /* size of offsets in the file */ - size_t len_size; /* size of lengths in the file */ - unsigned super; /* superblock version # */ - unsigned freelist; /* free list version # */ - unsigned stab; /* symbol table entry version # */ - unsigned shhdr; /* shared object header version # */ - hid_t fdriver; /* file driver */ - char dname[15]; /* buffer to store driver name */ - unsigned sym_lk; /* symbol table B-tree leaf 'K' value */ - unsigned sym_ik; /* symbol table B-tree internal 'K' value */ - unsigned istore_ik; /* indexed storage B-tree internal 'K' value */ - - fcpl=H5Fget_create_plist(fid); - H5Pget_version(fcpl, &super, &freelist, &stab, &shhdr); - H5Pget_userblock(fcpl,&userblock); - H5Pget_sizes(fcpl,&off_size,&len_size); - H5Pget_sym_k(fcpl,&sym_ik,&sym_lk); - H5Pget_istore_k(fcpl,&istore_ik); - H5Pclose(fcpl); - fapl=h5_fileaccess(); - fdriver=H5Pget_driver(fapl); - H5Pclose(fapl); - -/*------------------------------------------------------------------------- - * SUPER_BLOCK - *------------------------------------------------------------------------- - */ - printf("%s %s\n",SUPER_BLOCK, BEGIN); - indentation(indent + COL); - printf("%s %u\n","SUPERBLOCK_VERSION", super); - indentation(indent + COL); - printf("%s %u\n","FREELIST_VERSION", freelist); - indentation(indent + COL); - printf("%s %u\n","SYMBOLTABLE_VERSION", stab); - indentation(indent + COL); - printf("%s %u\n","OBJECTHEADER_VERSION", shhdr); - indentation(indent + COL); - HDfprintf(stdout,"%s %Hd\n","OFFSET_SIZE", (long_long)off_size); - indentation(indent + COL); - HDfprintf(stdout,"%s %Hd\n","LENGTH_SIZE", (long_long)len_size); - indentation(indent + COL); - printf("%s %u\n","BTREE_RANK", sym_ik); - indentation(indent + COL); - printf("%s %d\n","BTREE_LEAF", sym_lk); - - if (H5FD_CORE==fdriver) - { - strcpy(dname,"H5FD_CORE"); - } - else if (H5FD_FAMILY==fdriver) - { - strcpy(dname,"H5FD_FAMILY"); - } - else if (H5FD_LOG==fdriver) - { - strcpy(dname,"H5FD_LOG"); - } - else if (H5FD_MPIO==fdriver) - { - strcpy(dname,"H5FD_MPIO"); - } - else if (H5FD_MULTI==fdriver) - { - strcpy(dname,"H5FD_MULTI"); - } - else if (H5FD_SEC2==fdriver) - { - strcpy(dname,"H5FD_SEC2"); - } - else if (H5FD_STDIO==fdriver) - { - strcpy(dname,"H5FD_STDIO"); - } + hid_t fcpl; /* file creation property list ID */ + hid_t fapl; /* file access property list ID */ + hsize_t userblock; /* userblock size retrieved from FCPL */ + size_t off_size; /* size of offsets in the file */ + size_t len_size; /* size of lengths in the file */ + unsigned super; /* superblock version # */ + unsigned freelist; /* free list version # */ + unsigned stab; /* symbol table entry version # */ + unsigned shhdr; /* shared object header version # */ + hid_t fdriver; /* file driver */ + char dname[15]; /* buffer to store driver name */ + unsigned sym_lk; /* symbol table B-tree leaf 'K' value */ + unsigned sym_ik; /* symbol table B-tree internal 'K' value */ + unsigned istore_ik; /* indexed storage B-tree internal 'K' value */ + + fcpl=H5Fget_create_plist(fid); + H5Pget_version(fcpl, &super, &freelist, &stab, &shhdr); + H5Pget_userblock(fcpl,&userblock); + H5Pget_sizes(fcpl,&off_size,&len_size); + H5Pget_sym_k(fcpl,&sym_ik,&sym_lk); + H5Pget_istore_k(fcpl,&istore_ik); + H5Pclose(fcpl); + fapl=h5_fileaccess(); + fdriver=H5Pget_driver(fapl); + H5Pclose(fapl); + + /*------------------------------------------------------------------------- + * SUPER_BLOCK + *------------------------------------------------------------------------- + */ + printf("%s %s\n",SUPER_BLOCK, BEGIN); + indentation(indent + COL); + printf("%s %u\n","SUPERBLOCK_VERSION", super); + indentation(indent + COL); + printf("%s %u\n","FREELIST_VERSION", freelist); + indentation(indent + COL); + printf("%s %u\n","SYMBOLTABLE_VERSION", stab); + indentation(indent + COL); + printf("%s %u\n","OBJECTHEADER_VERSION", shhdr); + indentation(indent + COL); + HDfprintf(stdout,"%s %Hd\n","OFFSET_SIZE", (long_long)off_size); + indentation(indent + COL); + HDfprintf(stdout,"%s %Hd\n","LENGTH_SIZE", (long_long)len_size); + indentation(indent + COL); + printf("%s %u\n","BTREE_RANK", sym_ik); + indentation(indent + COL); + printf("%s %d\n","BTREE_LEAF", sym_lk); + + if (H5FD_CORE==fdriver) + HDstrcpy(dname,"H5FD_CORE"); + else if (H5FD_FAMILY==fdriver) + HDstrcpy(dname,"H5FD_FAMILY"); + else if (H5FD_LOG==fdriver) + HDstrcpy(dname,"H5FD_LOG"); + else if (H5FD_MPIO==fdriver) + HDstrcpy(dname,"H5FD_MPIO"); + else if (H5FD_MULTI==fdriver) + HDstrcpy(dname,"H5FD_MULTI"); + else if (H5FD_SEC2==fdriver) + HDstrcpy(dname,"H5FD_SEC2"); + else if (H5FD_STDIO==fdriver) + HDstrcpy(dname,"H5FD_STDIO"); #ifdef H5_HAVE_STREAM - else if (H5FD_STREAM==fdriver) - { - strcpy(dname,"H5FD_STREAM"); - } + else if (H5FD_STREAM==fdriver) + HDstrcpy(dname,"H5FD_STREAM"); #endif - indentation(indent + COL); - printf("%s %s\n","FILE_DRIVER", dname); - indentation(indent + COL); - printf("%s %u\n","ISTORE_K", istore_ik); - printf("%s\n",END); - -/*------------------------------------------------------------------------- - * USER_BLOCK - *------------------------------------------------------------------------- - */ - printf("USER_BLOCK %s\n",BEGIN); - indentation(indent + COL); - HDfprintf(stdout,"%s %Hu\n","USERBLOCK_SIZE", userblock); - printf("%s\n",END); + indentation(indent + COL); + printf("%s %s\n","FILE_DRIVER", dname); + indentation(indent + COL); + printf("%s %u\n","ISTORE_K", istore_ik); + printf("%s\n",END); + + /*------------------------------------------------------------------------- + * USER_BLOCK + *------------------------------------------------------------------------- + */ + printf("USER_BLOCK %s\n",BEGIN); + indentation(indent + COL); + HDfprintf(stdout,"%s %Hu\n","USERBLOCK_SIZE", userblock); + printf("%s\n",END); } /*------------------------------------------------------------------------- @@ -2916,15 +2898,15 @@ handle_groups(hid_t fid, char *group, void UNUSED * data) dump_header_format->groupblockend); d_status = EXIT_FAILURE; } else { - size_t new_len = strlen(group) + 1; + size_t new_len = HDstrlen(group) + 1; if (prefix_len <= new_len) { prefix_len = new_len; - prefix = realloc(prefix, prefix_len); + prefix = HDrealloc(prefix, prefix_len); } H5Gget_objinfo(gid, ".", TRUE, &statbuf); - strcpy(prefix, group); + HDstrcpy(prefix, group); dump_group(gid, group); if (H5Gclose(gid) < 0) @@ -2952,15 +2934,10 @@ handle_links(hid_t fid, char *links, void UNUSED * data) H5G_stat_t statbuf; if (H5Gget_objinfo(fid, links, FALSE, &statbuf) < 0) { - begin_obj(dump_header_format->softlinkbegin, links, - dump_header_format->softlinkblockbegin); - indentation(COL); error_msg(progname, "unable to get obj info from \"%s\"\n", links); - end_obj(dump_header_format->softlinkend, - dump_header_format->softlinkblockend); d_status = EXIT_FAILURE; } else if (statbuf.type == H5G_LINK) { - char *buf = malloc(statbuf.u.slink.linklen); + char *buf = HDmalloc(statbuf.u.slink.linklen); begin_obj(dump_header_format->softlinkbegin, links, dump_header_format->softlinkblockbegin); @@ -2976,14 +2953,10 @@ handle_links(hid_t fid, char *links, void UNUSED * data) end_obj(dump_header_format->softlinkend, dump_header_format->softlinkblockend); - free(buf); + + HDfree(buf); } else { - begin_obj(dump_header_format->softlinkbegin, links, - dump_header_format->softlinkblockbegin); - indentation(COL); error_msg(progname, "\"%s\" is not a link\n", links); - end_obj(dump_header_format->softlinkend, - dump_header_format->softlinkblockend); d_status = EXIT_FAILURE; } } @@ -3453,13 +3426,13 @@ main(int argc, const char *argv[]) /* find all objects that might be targets of a refernce */ init_ref_path_table(fid); /* Insert the root group into the ref. path table */ - H5Giterate(fid, "/", NULL, fill_ref_path_table, (void *)""); + H5Giterate(fid, (const char *)"/", NULL, fill_ref_path_table, (void *)""); if (doxml) { /* initialize XML */ /* reset prefix! */ - strcpy(prefix, ""); + HDstrcpy(prefix, ""); /* make sure the URI is initialized to something */ if (xml_dtd_uri == NULL) { @@ -3584,7 +3557,7 @@ done: free_table(dset_table); free_table(type_table); - free(prefix); + HDfree(prefix); /* To Do: clean up XML table */ @@ -4485,7 +4458,7 @@ xml_dump_dataspace(hid_t space) static void xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNUSED pindex) { - h5dump_t *outputformat = &xml_dataformat; + h5tool_format_t *outputformat = &xml_dataformat; int status = -1; void *buf; hid_t space, type, p_type; @@ -4723,14 +4696,14 @@ xml_dump_named_datatype(hid_t type, const char *name) char *t_prefix; char *t_name; - tmp = malloc(strlen(prefix) + strlen(name) + 2); - strcpy(tmp, prefix); - strcat(tmp, "/"); - strcat(tmp, name); + tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); + HDstrcpy(tmp, prefix); + HDstrcat(tmp, "/"); + HDstrcat(tmp, name); indentation(indent); - /*char **/ dtxid = malloc(100); - /*char **/ parentxid = malloc(100); + /*char **/ dtxid = HDmalloc(100); + /*char **/ parentxid = HDmalloc(100); /*char **/t_tmp = xml_escape_the_name(tmp); /*char **/t_prefix = xml_escape_the_name(prefix); /*char **/t_name = xml_escape_the_name(name); @@ -4749,20 +4722,20 @@ xml_dump_named_datatype(hid_t type, const char *name) "Parents=\"%s\" H5ParentPaths=\"%s\">\n", xmlnsprefix, name, dtxid, - parentxid,(strcmp(prefix, "") ? t_prefix : "/")); + parentxid,(HDstrcmp(prefix, "") ? t_prefix : "/")); } else { printf("<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" " "H5Path=\"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n", xmlnsprefix, t_name, dtxid, - t_tmp, parentxid, (strcmp(prefix, "") ? t_prefix : "/")); + t_tmp, parentxid, (HDstrcmp(prefix, "") ? t_prefix : "/")); } - free(dtxid); - free(parentxid); - free(t_tmp); - free(t_prefix); - free(t_name); - free(tmp); + HDfree(dtxid); + HDfree(parentxid); + HDfree(t_tmp); + HDfree(t_prefix); + HDfree(t_name); + HDfree(tmp); indent += COL; indentation(indent); @@ -4807,17 +4780,17 @@ xml_dump_group(hid_t gid, const char *name) char *t_objname; char *par_name; - if (strcmp(name, "/") == 0) { + if (HDstrcmp(name, "/") == 0) { isRoot = 1; - tmp = malloc(2); - strcpy(tmp, "/"); + tmp = HDmalloc(2); + HDstrcpy(tmp, "/"); } else { - tmp = malloc(strlen(prefix) + strlen(name) + 2); - strcpy(tmp, prefix); + tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); + HDstrcpy(tmp, prefix); par = HDstrdup(tmp); - cp = strrchr(par, '/'); + cp = HDstrrchr(par, '/'); if (cp != NULL) { - if ((cp == par) && strlen(par) > 1) { + if ((cp == par) && HDstrlen(par) > 1) { *(cp + 1) = '\0'; } else { *cp = '\0'; @@ -5212,59 +5185,6 @@ xml_print_strs(hid_t did, int source) } /*------------------------------------------------------------------------- - * Function: check_compression - * - * Purpose: private function to check for compression and - * put a comment in the XML. (Not fully implemented.) - * - * Return: void - * - * Programmer: REMcG - * - * Modifications: - * - *------------------------------------------------------------------------- - */ -#ifdef LATER -static void -check_compression(hid_t dcpl) -{ - int nfilt; - int i; - H5Z_filter_t filter; - char namebuf[20]; - size_t cd_nelmts = 1; - unsigned int cd_values; - unsigned int flags; -/* not used yet: will need to do somehting more elaborate to handle future - * compression methods. - char *t1 = "H5Z_FILTER_DEFLATE"; -*/ - - nfilt = H5Pget_nfilters(dcpl); - if (nfilt <= 0) - return; - for (i = 0; i < nfilt; i++) { -#ifdef H5_WANT_H5_V1_6_COMPAT - filter = H5Pget_filter(dcpl, i, &flags, - (size_t *) &cd_nelmts, - &cd_values, 20, namebuf); -#else - filter = H5Pget_filter(dcpl, i, &flags, - (size_t *) &cd_nelmts, - &cd_values, 20, namebuf, NULL); -#endif /* H5_WANT_H5_V1_6_COMPAT */ - if (filter == H5Z_FILTER_DEFLATE) { - indentation(indent + COL); - printf("<%sCompression />\n",xmlnsprefix); - indentation(indent + COL); - printf("<!-- Compression parameter %d -->\n", cd_values); - } - } -} -#endif /* LATER */ - -/*------------------------------------------------------------------------- * Function: check_filters * * Purpose: private function to check for the filters and @@ -5512,13 +5432,13 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset) hsize_t tempi; char *tmp; char *t_name, *t_tmp, *t_prefix; - char *rstr = malloc(100); - char *pstr = malloc(100); + char *rstr = HDmalloc(100); + char *pstr = HDmalloc(100); - tmp = malloc(strlen(prefix) + strlen(name) + 2); - strcpy(tmp, prefix); - strcat(tmp, "/"); - strcat(tmp, name); + tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); + HDstrcpy(tmp, prefix); + HDstrcat(tmp, "/"); + HDstrcat(tmp, name); indentation(indent); t_name = xml_escape_the_name(name); @@ -5530,12 +5450,12 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset) printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s\" H5Path= \"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n",xmlnsprefix, t_name, rstr, t_tmp, pstr, strcmp(prefix, "") ? t_prefix : "/"); - free(t_name); - free(t_tmp); - free(t_prefix); - free(rstr); - free(pstr); - free(tmp); + HDfree(t_name); + HDfree(t_tmp); + HDfree(t_prefix); + HDfree(rstr); + HDfree(pstr); + HDfree(tmp); dcpl = H5Dget_create_plist(did); type = H5Dget_type(did); @@ -5994,7 +5914,32 @@ h5_fileaccess(void) static void init_prefix(char **prfx, size_t prfx_len) { - assert(prfx_len > 0); + HDassert(prfx_len > 0); *prfx = HDcalloc(prfx_len, 1); } + +/*------------------------------------------------------------------------- + * Function: add_prefix + * + * Purpose: Add object to prefix + * + * Return: void + * + *------------------------------------------------------------------------- + */ +static void +add_prefix(char **prfx, size_t *prfx_len, const char *name) +{ + size_t new_len = HDstrlen(*prfx) + HDstrlen(name) + 2; + + /* Check if we need more space */ + if(*prfx_len <= new_len) { + *prfx_len = new_len + 1; + *prfx = HDrealloc(*prfx, *prfx_len); + } + + /* Append object name to prefix */ + HDstrcat(HDstrcat(*prfx, "/"), name); +} /* end add_prefix */ + diff --git a/tools/h5dump/h5dump.h b/tools/h5dump/h5dump.h index 96e7d71..dbc5de9 100644 --- a/tools/h5dump/h5dump.h +++ b/tools/h5dump/h5dump.h @@ -18,4 +18,133 @@ #define H5DUMP_MAX_RANK H5S_MAX_RANK +#define ATTRIBUTE_DATA 0 +#define DATASET_DATA 1 +#define ENUM_DATA 2 +#define COL 3 + +/* Strings for output */ +#define ATTRIBUTE "ATTRIBUTE" +#define BLOCK "BLOCK" +#define SUPER_BLOCK "SUPER_BLOCK" +#define COMPRESSION "COMPRESSION" +#define CONCATENATOR "//" +#define COMPLEX "COMPLEX" +#define COUNT "COUNT" +#define CSET "CSET" +#define CTYPE "CTYPE" +#define DATA "DATA" +#define DATASPACE "DATASPACE" +#define EXTERNAL "EXTERNAL" +#define FILENO "FILENO" +#define HARDLINK "HARDLINK" +#define NLINK "NLINK" +#define OBJID "OBJECTID" +#define OBJNO "OBJNO" +#define S_SCALAR "SCALAR" +#define S_SIMPLE "SIMPLE" +#define S_NULL "NULL" +#define SOFTLINK "SOFTLINK" +#define STORAGELAYOUT "STORAGELAYOUT" +#define START "START" +#define STRIDE "STRIDE" +#define STRSIZE "STRSIZE" +#define STRPAD "STRPAD" +#define SUBSET "SUBSET" +#define FILTERS "FILTERS" +#define DEFLATE "COMPRESSION DEFLATE" +#define DEFLATE_LEVEL "LEVEL" +#define SHUFFLE "PREPROCESSING SHUFFLE" +#define FLETCHER32 "CHECKSUM FLETCHER32" +#define SZIP "COMPRESSION SZIP" +#define NBIT "COMPRESSION NBIT" +#define SCALEOFFSET "COMPRESSION SCALEOFFSET" +#define SCALEOFFSET_MINBIT "MIN BITS" +#define STORAGE_LAYOUT "STORAGE_LAYOUT" +#define CONTIGUOUS "CONTIGUOUS" +#define COMPACT "COMPACT" +#define CHUNKED "CHUNKED" +#define EXTERNAL_FILE "EXTERNAL_FILE" +#define FILLVALUE "FILLVALUE" +#define FILE_CONTENTS "FILE_CONTENTS" + +#define BEGIN "{" +#define END "}" + +typedef struct h5dump_header_t { + const char *name; + const char *filebegin; + const char *fileend; + const char *bootblockbegin; + const char *bootblockend; + const char *groupbegin; + const char *groupend; + const char *datasetbegin; + const char *datasetend; + const char *attributebegin; + const char *attributeend; + const char *datatypebegin; + const char *datatypeend; + const char *dataspacebegin; + const char *dataspaceend; + const char *databegin; + const char *dataend; + const char *softlinkbegin; + const char *softlinkend; + const char *subsettingbegin; + const char *subsettingend; + const char *startbegin; + const char *startend; + const char *stridebegin; + const char *strideend; + const char *countbegin; + const char *countend; + const char *blockbegin; + const char *blockend; + + const char *fileblockbegin; + const char *fileblockend; + const char *bootblockblockbegin; + const char *bootblockblockend; + const char *groupblockbegin; + const char *groupblockend; + const char *datasetblockbegin; + const char *datasetblockend; + const char *attributeblockbegin; + const char *attributeblockend; + const char *datatypeblockbegin; + const char *datatypeblockend; + const char *dataspaceblockbegin; + const char *dataspaceblockend; + const char *datablockbegin; + const char *datablockend; + const char *softlinkblockbegin; + const char *softlinkblockend; + const char *strblockbegin; + const char *strblockend; + const char *enumblockbegin; + const char *enumblockend; + const char *structblockbegin; + const char *structblockend; + const char *vlenblockbegin; + const char *vlenblockend; + const char *subsettingblockbegin; + const char *subsettingblockend; + const char *startblockbegin; + const char *startblockend; + const char *strideblockbegin; + const char *strideblockend; + const char *countblockbegin; + const char *countblockend; + const char *blockblockbegin; + const char *blockblockend; + + const char *dataspacedescriptionbegin; + const char *dataspacedescriptionend; + const char *dataspacedimbegin; + const char *dataspacedimend; + +} h5dump_header_t; + + #endif /* !H5DUMP_H__ */ diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c index 4f1c0f5..8345e5a 100644 --- a/tools/h5dump/h5dumpgentest.c +++ b/tools/h5dump/h5dumpgentest.c @@ -4664,7 +4664,7 @@ static void gent_filters(void) assert(ret>=0); /* set the scaleoffset filter */ - ret=H5Pset_scaleoffset(dcpl,H5Z_SO_INT,H5Tget_size(H5T_NATIVE_INT)); + ret=H5Pset_scaleoffset(dcpl,H5Z_SO_INT,(int)H5Tget_size(H5T_NATIVE_INT)); assert(ret>=0); ret=make_dset(fid,"scaleoffset",sid,H5T_NATIVE_INT,dcpl,buf1); |