[svn-r23443] merged from trunk

4 files changed, 340 insertions, 388 deletions

diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt
index 437fed3..95777b3 100644
--- a/tools/h5jam/CMakeLists.txt
+++ b/tools/h5jam/CMakeLists.txt
@@ -112,6 +112,13 @@ IF (BUILD_TESTING)
       ENDIF (NOT "${resultcode}" STREQUAL "0")
     ELSE (HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
+          NAME H5JAM-${expectfile}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${expectfile}.out
+              ${expectfile}.out.err
+      )
+      ADD_TEST (
           NAME H5JAM-${expectfile}
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5jam>"
@@ -122,6 +129,7 @@ IF (BUILD_TESTING)
               -D "TEST_REFERENCE=testfiles/${expectfile}.txt"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
+      SET_TESTS_PROPERTIES (H5JAM-${expectfile} PROPERTIES DEPENDS H5JAM-${expectfile}-clear-objects)
     ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
   ENDMACRO (TEST_H5JAM_OUTPUT)
 
@@ -138,6 +146,13 @@ IF (BUILD_TESTING)
       ENDIF (NOT "${resultcode}" STREQUAL "0")
     ELSE (HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
+          NAME H5JAM-UNJAM-${expectfile}-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${expectfile}.out
+              ${expectfile}.out.err
+      )
+      ADD_TEST (
           NAME H5JAM-UNJAM-${expectfile}
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>"
@@ -148,50 +163,38 @@ IF (BUILD_TESTING)
               -D "TEST_REFERENCE=testfiles/${expectfile}.txt"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
+      SET_TESTS_PROPERTIES (H5JAM-UNJAM-${expectfile} PROPERTIES DEPENDS H5JAM-UNJAM-${expectfile}-clear-objects)
     ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
   ENDMACRO (TEST_H5UNJAM_OUTPUT)
 
-  MACRO (CLEANUP testname)
-    ADD_TEST (
-        NAME H5JAM-CLEANUP-${testname}-clear-objects
-        COMMAND ${CMAKE_COMMAND} -E remove ${ARGN}
-    )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5JAM-CLEANUP-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    SET (last_test "H5JAM-CLEANUP-${testname}-clear-objects")
-  ENDMACRO(CLEANUP testname testfile)
-
-  MACRO (CHECKFILE testname expected actual)
+  MACRO (CHECKFILE testname testdepends expected actual)
     # If using memchecker add tests without using scripts
     IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
-          NAME H5JAM-CHECKFILE-${testname}-clear-objects
+          NAME H5JAM-${testname}-CHECKFILE-clear-objects
           COMMAND    ${CMAKE_COMMAND}
               -E remove
-              ${expected}.new
-              ${expected}.new.err
+              ${actual}.new
+              ${actual}.new.err
               ${actual}.out
               ${actual}.out.err
       )
-      IF (NOT "${last_test}" STREQUAL "")
-        SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-      ENDIF (NOT "${last_test}" STREQUAL "")
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-clear-objects PROPERTIES DEPENDS ${testdepends})
       ADD_TEST (
-          NAME H5JAM-CHECKFILE-H5DMP-${testname}
+          NAME H5JAM-${testname}-CHECKFILE-H5DMP
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
               -D "TEST_ARGS:STRING=testfiles/${expected}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_OUTPUT=${expected}.new"
+              -D "TEST_OUTPUT=${actual}.new"
               -D "TEST_EXPECT=0"
               -D "TEST_FILTER=(^(HDF5)[^\n]*)"
               -D "TEST_SKIP_COMPARE=TRUE"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
-      SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-${testname}-clear-objects)
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-H5DMP PROPERTIES DEPENDS H5JAM-${testname}-CHECKFILE-clear-objects)
       ADD_TEST (
-          NAME H5JAM-CHECKFILE-H5DMP_CMP-${testname}
+          NAME H5JAM-${testname}-CHECKFILE-H5DMP_CMP
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
               -D "TEST_ARGS:STRING=${actual}"
@@ -199,168 +202,210 @@ IF (BUILD_TESTING)
               -D "TEST_OUTPUT=${actual}.out"
               -D "TEST_EXPECT=0"
               -D "TEST_FILTER=(^(HDF5)[^\n]*)"
-              -D "TEST_REFERENCE=${expected}.new"
+              -D "TEST_REFERENCE=${actual}.new"
               -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
       )
-      SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DMP_CMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-H5DMP-${testname})
-      SET (last_test "H5JAM-CHECKFILE-H5DMP_CMP-${testname}")
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECKFILE-H5DMP_CMP PROPERTIES DEPENDS H5JAM-${testname}-CHECKFILE-H5DMP)
     ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
-  ENDMACRO(CHECKFILE testname expected actual)
-
-  MACRO (SETUP testname infile outfile)
-    ADD_TEST (
-        NAME H5JAM-SETUP-${testname}-clear-objects
-        COMMAND ${CMAKE_COMMAND} -E remove ${outfile}
-    )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5JAM-SETUP-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    ADD_TEST (
-        NAME H5JAM-SETUP-${testname}
-        COMMAND ${CMAKE_COMMAND} -E copy_if_different ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/testfiles/${infile} ${PROJECT_BINARY_DIR}/${outfile}
-    )
-    SET_TESTS_PROPERTIES (H5JAM-SETUP-${testname} PROPERTIES DEPENDS H5JAM-SETUP-${testname}-clear-objects)
-    SET (last_test "H5JAM-SETUP-${testname}")
-  ENDMACRO(SETUP testname infile outfile)
+  ENDMACRO(CHECKFILE testname testdepends expected actual)
 
-  MACRO (CHECK_UB_1 testname testfile ufile)
+  MACRO (UNJAMTEST testname setfile infile ufile chkfile outfile)
     IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
-          NAME H5JAM-CHECK_UB_1-${testname}-clear-objects
-          COMMAND    ${CMAKE_COMMAND}
-              -E remove
-              ${testfile}.len.txt
-              ${testfile}.cmp
-              ${ufile}.cmp
+          NAME H5JAM-${testname}-UNJAM-SETUP-clear-objects
+          COMMAND ${CMAKE_COMMAND} -E remove ${infile}
+      )
+      ADD_TEST (
+          NAME H5JAM-${testname}-UNJAM-SETUP
+          COMMAND ${CMAKE_COMMAND} -E copy_if_different ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/testfiles/${setfile} ${PROJECT_BINARY_DIR}/${infile}
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-SETUP PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-SETUP-clear-objects)
+      ADD_TEST (
+          NAME H5JAM-${testname}-UNJAM-clear-objects
+          COMMAND ${CMAKE_COMMAND} -E remove ${outfile}
       )
-      IF (NOT "${last_test}" STREQUAL "")
-        SET_TESTS_PROPERTIES (H5JAM-CHECK_UB_1-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-      ENDIF (NOT "${last_test}" STREQUAL "")
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-SETUP)
+      IF (NOT "${ufile}" STREQUAL "NONE")
+        ADD_TEST (
+            NAME H5JAM-${testname}-UNJAM_D-clear-objects
+            COMMAND ${CMAKE_COMMAND} -E remove ${ufile}
+        )
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM_D-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
+        ADD_TEST (NAME H5JAM-${testname}-UNJAM COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -u ${ufile} -o ${outfile})
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM_D-clear-objects)
+        SET (compare_test ${ufile})
+      ELSE (NOT "${ufile}" STREQUAL "NONE")
+        IF (NOT "${ARGN}" STREQUAL "--delete")
+          ADD_TEST (
+              NAME H5JAM-${testname}-UNJAM_D-clear-objects
+              COMMAND ${CMAKE_COMMAND} -E remove ${outfile}.ufile.txt ${outfile}.ufile.txt.err
+          )
+          SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM_D-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
+          ADD_TEST (
+              NAME H5JAM-${testname}-UNJAM
+              COMMAND "${CMAKE_COMMAND}"
+                  -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>"
+                  -D "TEST_ARGS:STRING=-i;${infile};-o;${outfile}"
+                  -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+                  -D "TEST_OUTPUT=${outfile}.ufile.txt"
+                  -D "TEST_EXPECT=0"
+                  -D "TEST_SKIP_COMPARE=TRUE"
+                  -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
+          )
+          SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM_D-clear-objects)
+          SET (compare_test "${outfile}.ufile.txt")
+        ELSE (NOT "${ARGN}" STREQUAL "--delete")
+          ADD_TEST (NAME H5JAM-${testname}-UNJAM COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile})
+          SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
+          SET (compare_test "")
+        ENDIF (NOT "${ARGN}" STREQUAL "--delete")
+      ENDIF (NOT "${ufile}" STREQUAL "NONE")
+      IF (NOT "${compare_test}" STREQUAL "")
+        ADD_TEST (
+            NAME H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects
+            COMMAND    ${CMAKE_COMMAND}
+                -E remove
+                ${infile}.len.txt
+                ${infile}.cmp
+                ${infile}-ub.cmp
+        )
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}-UNJAM")
+        ADD_TEST (
+            NAME H5JAM-${testname}-UNJAM-CHECK_UB_1
+            COMMAND "${CMAKE_COMMAND}"
+                -D "TEST_PROGRAM=$<TARGET_FILE:tellub>"
+                -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>"
+                -D "TEST_CHECKUB=YES"
+                -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+                -D "TEST_HFILE=${infile}"
+                -D "TEST_UFILE=${compare_test}"
+                -D "TEST_EXPECT=0"
+                -D "TEST_OFILE="
+                -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake"
+        )
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-CHECK_UB_1-clear-objects)
+      ENDIF (NOT "${compare_test}" STREQUAL "")
+
       ADD_TEST (
-          NAME H5JAM-CHECK_UB_1-${testname}
+          NAME H5JAM-${testname}-UNJAM-CHECK_NOUB
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:tellub>"
               -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>"
-              -D "TEST_CHECKUB=YES"
+              -D "TEST_CHECKUB=NO"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_HFILE=${testfile}"
-              -D "TEST_UFILE=${ufile}"
+              -D "TEST_HFILE=${outfile}"
               -D "TEST_EXPECT=0"
-              -D "TEST_OFILE=${ARGN}"
+              -D "TEST_UFILE=NULL"
+              -D "TEST_OFILE=NULL"
               -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake"
       )
-      SET_TESTS_PROPERTIES (H5JAM-CHECK_UB_1-${testname} PROPERTIES DEPENDS H5JAM-CHECK_UB_1-${testname}-clear-objects)
-      SET (last_test "H5JAM-CHECK_UB_1-${testname}")
+      IF (NOT "${compare_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_NOUB PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-CHECK_UB_1)
+      ELSE (NOT "${compare_test}" STREQUAL "")
+        SET_TESTS_PROPERTIES (H5JAM-${testname}-UNJAM-CHECK_NOUB PROPERTIES DEPENDS H5JAM-${testname}-UNJAM)
+      ENDIF (NOT "${compare_test}" STREQUAL "")
+
+      CHECKFILE (${testname} "H5JAM-${testname}-UNJAM-CHECK_NOUB" ${chkfile} ${outfile})
     ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
-  ENDMACRO(CHECK_UB_1 testname testfile ufile)
+  ENDMACRO(UNJAMTEST testname infile ufile outfile)
 
-  MACRO (CHECK_NOUB testname testfile)
+  MACRO (JAMTEST testname jamfile infile chkfile outfile)
     IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
-          NAME H5JAM-CHECK_NOUB-${testname}
+          NAME H5JAM-${testname}-clear-objects
+          COMMAND ${CMAKE_COMMAND} -E remove ${outfile} ${infile}.cpy.h5
+      )
+    ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+    ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i testfiles/${infile} -o ${outfile} ${ARGN})
+    IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+      SET_TESTS_PROPERTIES (H5JAM-${testname} PROPERTIES DEPENDS H5JAM-${testname}-clear-objects)
+      SET (compare_test ${outfile})
+      SET (compare_orig testfiles/${infile})
+      IF ("${ARGN}" STREQUAL "--clobber")
+        SET (compare_orig "")
+      ENDIF ("${ARGN}" STREQUAL "--clobber")
+
+      ADD_TEST (
+          NAME H5JAM-${testname}-CHECK_UB_1-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${compare_test}.len.txt
+              ${compare_test}.cmp
+              ${compare_test}-ub.cmp
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}")
+      ADD_TEST (
+          NAME H5JAM-${testname}-CHECK_UB_1
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_PROGRAM=$<TARGET_FILE:tellub>"
               -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>"
-              -D "TEST_CHECKUB=NO"
+              -D "TEST_CHECKUB=YES"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_HFILE=${testfile}"
+              -D "TEST_HFILE=${compare_test}"
+              -D "TEST_UFILE=testfiles/${jamfile}"
               -D "TEST_EXPECT=0"
-              -D "TEST_UFILE=NULL"
-              -D "TEST_OFILE=NULL"
+              -D "TEST_OFILE=${compare_orig}"
               -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake"
       )
-      IF (NOT "${last_test}" STREQUAL "")
-        SET_TESTS_PROPERTIES (H5JAM-CHECK_NOUB-${testname} PROPERTIES DEPENDS ${last_test})
-      ENDIF (NOT "${last_test}" STREQUAL "")
-      SET (last_test "H5JAM-CHECK_NOUB-${testname}")
+      SET_TESTS_PROPERTIES (H5JAM-${testname}-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}-CHECK_UB_1-clear-objects)
+      CHECKFILE (${testname} "H5JAM-${testname}-CHECK_UB_1" ${chkfile} ${outfile})
     ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
-  ENDMACRO(CHECK_NOUB testname testfile)
+  ENDMACRO (JAMTEST testname jamfile infile outfile)
 
-  MACRO (UNJAMTEST testname infile ufile outfile)
-    ADD_TEST (
-        NAME H5JAM-UNJAM-${testname}-clear-objects
-        COMMAND ${CMAKE_COMMAND} -E remove ${outfile}
-    )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    IF (NOT "${ufile}" STREQUAL "NONE")
+  MACRO (JAMTEST_NONE testname jamfile infile setfile chkfile)
+    IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
       ADD_TEST (
-          NAME H5JAM-UNJAM_D-${testname}-clear-objects
-          COMMAND ${CMAKE_COMMAND} -E remove ${ufile}
+          NAME H5JAM-${testname}_NONE-clear-objects
+          COMMAND ${CMAKE_COMMAND} -E remove 
+              ${chkfile} ${chkfile}.cpy.h5
       )
-      SET_TESTS_PROPERTIES (H5JAM-UNJAM_D-${testname}-clear-objects PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects)
-      ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -u ${ufile} -o ${outfile})
-      SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM_D-${testname}-clear-objects)
-      SET (compare_test ${ufile})
-    ELSE (NOT "${ufile}" STREQUAL "NONE")
-      IF (NOT "${ARGN}" STREQUAL "--delete")
-        ADD_TEST (
-            NAME H5JAM-UNJAM_D-${testname}-clear-objects
-            COMMAND ${CMAKE_COMMAND} -E remove ${outfile}.ufile.txt ${outfile}.ufile.txt.err
-        )
-        SET_TESTS_PROPERTIES (H5JAM-UNJAM_D-${testname}-clear-objects PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects)
-        IF (HDF5_ENABLE_USING_MEMCHECKER)
-          ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile})
-        ELSE (HDF5_ENABLE_USING_MEMCHECKER)
-          ADD_TEST (
-              NAME H5JAM-UNJAM-${testname}
-              COMMAND "${CMAKE_COMMAND}"
-                  -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>"
-                  -D "TEST_ARGS:STRING=-i;${infile};-o;${outfile}"
-                  -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-                  -D "TEST_OUTPUT=${outfile}.ufile.txt"
-                  -D "TEST_EXPECT=0"
-                  -D "TEST_SKIP_COMPARE=TRUE"
-                  -P "${HDF5_RESOURCES_DIR}/runTest.cmake"
-          )
-        ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
-        SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM_D-${testname}-clear-objects)
-        SET (compare_test "${outfile}.ufile.txt")
-      ELSE (NOT "${ARGN}" STREQUAL "--delete")
-        ADD_TEST (NAME H5JAM-UNJAM-${testname} COMMAND $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile})
-        SET_TESTS_PROPERTIES (H5JAM-UNJAM-${testname} PROPERTIES DEPENDS H5JAM-UNJAM-${testname}-clear-objects)
-        SET (compare_test "")
-      ENDIF (NOT "${ARGN}" STREQUAL "--delete")
-    ENDIF (NOT "${ufile}" STREQUAL "NONE")
-    SET (last_test "H5JAM-UNJAM-${testname}")
-    IF (NOT "${compare_test}" STREQUAL "")
-      CHECK_UB_1 (${testname} ${infile} ${compare_test})
-    ENDIF (NOT "${compare_test}" STREQUAL "")
-    CHECK_NOUB (${testname} ${outfile})
-  ENDMACRO(UNJAMTEST testname infile ufile outfile)
+      ADD_TEST (
+          NAME H5JAM-${testname}_NONE-SETUP
+          COMMAND ${CMAKE_COMMAND} -E copy_if_different testfiles/${setfile} ${chkfile}
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-SETUP PROPERTIES DEPENDS H5JAM-${testname}_NONE-clear-objects)
 
-  MACRO (JAMTEST testname jamfile infile outfile)
-    ADD_TEST (
-        NAME H5JAM-${testname}-clear-objects
-        COMMAND ${CMAKE_COMMAND} -E remove ${outfile} ${infile}.cpy.h5
-    )
-    IF (NOT "${last_test}" STREQUAL "")
-      SET_TESTS_PROPERTIES (H5JAM-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
-    ENDIF (NOT "${last_test}" STREQUAL "")
-    SET (last_test "H5JAM-${testname}-clear-objects")
-    IF ("${outfile}" STREQUAL "NONE")
       ADD_TEST (
-          NAME H5JAM-NONE_COPY-${testname}
-          COMMAND ${CMAKE_COMMAND} -E copy_if_different ${infile} ${infile}.cpy.h5
+          NAME H5JAM-${testname}_NONE_COPY
+          COMMAND ${CMAKE_COMMAND} -E copy_if_different ${chkfile} ${chkfile}.cpy.h5
       )
-      SET_TESTS_PROPERTIES (H5JAM-NONE_COPY-${testname} PROPERTIES DEPENDS ${last_test})
-      SET (last_test "H5JAM-NONE_COPY-${testname}")
-      ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i ${infile} ${ARGN})
-      SET (compare_test ${infile})
-      SET (compare_orig ${infile}.cpy.h5)
-    ELSE ("${outfile}" STREQUAL "NONE")
-      ADD_TEST (NAME H5JAM-${testname} COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i testfiles/${infile} -o ${outfile} ${ARGN})
-      SET (compare_test ${outfile})
-      SET (compare_orig testfiles/${infile})
-    ENDIF ("${outfile}" STREQUAL "NONE")
-    SET_TESTS_PROPERTIES (H5JAM-${testname} PROPERTIES DEPENDS ${last_test})
-    SET (last_test "H5JAM-${testname}")
-    IF ("${ARGN}" STREQUAL "--clobber")
-      SET (compare_orig "")
-    ENDIF ("${ARGN}" STREQUAL "--clobber")
-    CHECK_UB_1 (${testname} ${compare_test} testfiles/${jamfile} ${compare_orig})
-  ENDMACRO (JAMTEST testname jamfile infile outfile)
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE_COPY PROPERTIES DEPENDS H5JAM-${testname}_NONE-SETUP)
+
+      ADD_TEST (NAME H5JAM-${testname}_NONE COMMAND $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i ${chkfile} ${ARGN})
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE PROPERTIES DEPENDS H5JAM-${testname}_NONE_COPY)
+
+      SET (compare_test ${chkfile})
+      SET (compare_orig ${chkfile}.cpy.h5)
+      IF ("${ARGN}" STREQUAL "--clobber")
+        SET (compare_orig "")
+      ENDIF ("${ARGN}" STREQUAL "--clobber")
+
+      ADD_TEST (
+          NAME H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+              ${compare_test}.len.txt
+              ${compare_test}.cmp
+              ${compare_test}-ub.cmp
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects PROPERTIES DEPENDS "H5JAM-${testname}_NONE")
+      ADD_TEST (
+          NAME H5JAM-${testname}_NONE-CHECK_UB_1
+          COMMAND "${CMAKE_COMMAND}"
+              -D "TEST_PROGRAM=$<TARGET_FILE:tellub>"
+              -D "TEST_GET_PROGRAM=$<TARGET_FILE:getub>"
+              -D "TEST_CHECKUB=YES"
+              -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+              -D "TEST_HFILE=${compare_test}"
+              -D "TEST_UFILE=testfiles/${jamfile}"
+              -D "TEST_EXPECT=0"
+              -D "TEST_OFILE=${compare_orig}"
+              -P "${HDF5_RESOURCES_DIR}/userblockTest.cmake"
+      )
+      SET_TESTS_PROPERTIES (H5JAM-${testname}_NONE-CHECK_UB_1 PROPERTIES DEPENDS H5JAM-${testname}_NONE-CHECK_UB_1-clear-objects)
+      CHECKFILE (${testname} "H5JAM-${testname}_NONE-CHECK_UB_1" ${infile} ${chkfile})
+    ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
+  ENDMACRO (JAMTEST_NONE testname jamfile infile setfile chkfile)
 
 ##############################################################################
 ##############################################################################
@@ -377,118 +422,45 @@ IF (BUILD_TESTING)
   # don't allow HDF5 format file as an user block file
   TEST_H5JAM_OUTPUT(h5jam-ub-nohdf5 1 -i testfiles/tall.h5 -u testfiles/tall.h5 -o tall-tmp.h5)
 
-  JAMTEST (tall_u10 u10.txt tall.h5 ta2.h5)
-  CHECKFILE (tall_u10 tall.h5 ta2.h5)
-#  CLEANUP (tall_u10 ta2.h5)
-  JAMTEST (tall_u511 u511.txt tall.h5 ta3.h5)
-  CHECKFILE (tall_u511 tall.h5 ta3.h5)
-#  CLEANUP (tall_u511 ta3.h5)
-  JAMTEST (tall_u512 u512.txt tall.h5 ta4.h5)
-  CHECKFILE (tall_u512 tall.h5 ta4.h5)
-#  CLEANUP (tall_u512 ta4.h5)
-  JAMTEST (tall_u513 u513.txt tall.h5 ta5.h5)
-  CHECKFILE (tall_u513 tall.h5 ta5.h5)
-#  CLEANUP (tall_u513 ta5.h5)
-
-  SETUP (ta_u10 tall.h5 ta.h5)
-  JAMTEST (ta_u10 u10.txt ta.h5 NONE)
-  CHECKFILE (ta_u10 tall.h5 ta.h5)
-  SETUP (ta_u511 tall.h5 ta.h5 NOCLEAN)
-  JAMTEST (ta_u511 u511.txt ta.h5 NONE)
-  CHECKFILE (ta_u511 tall.h5 ta.h5)
-  SETUP (ta_u512 tall.h5 ta.h5 NOCLEAN)
-  JAMTEST (ta_u512 u512.txt ta.h5 NONE)
-  CHECKFILE (ta_u512 tall.h5 ta.h5)
-  SETUP (ta_u513 tall.h5 ta.h5 NOCLEAN)
-  JAMTEST (ta_u513 u513.txt ta.h5 NONE)
-  CHECKFILE (ta_u513 tall.h5 ta.h5)
-#  CLEANUP (ta ta.h5)
-
-  JAMTEST (twithub_u10 u10.txt twithub.h5 tax2.h5)
-  CHECKFILE (twithub_u10 tall.h5 tax2.h5)
-#  CLEANUP (twithub_u10 tax2.h5)
-  JAMTEST (twithub_u511 u511.txt twithub.h5 tax3.h5)
-  CHECKFILE (twithub_u511 tall.h5 tax3.h5)
-#  CLEANUP (twithub_u511 tax3.h5)
-  JAMTEST (twithub_u512 u512.txt twithub.h5 tax4.h5)
-  CHECKFILE (twithub_u512 tall.h5 tax4.h5)
-#  CLEANUP (twithub_u512 tax4.h5)
-  JAMTEST (twithub_u513 u513.txt twithub.h5 tax5.h5)
-  CHECKFILE (twithub_u513 tall.h5 tax5.h5)
-#  CLEANUP (twithub_u513 tax5.h5)
-
-  JAMTEST (twithub513_u10 u10.txt twithub513.h5 tax6.h5)
-  CHECKFILE (twithub513_u10 tall.h5 tax6.h5)
-#  CLEANUP (twithub513_u10 tax6.h5)
-  JAMTEST (twithub513_u511 u511.txt twithub513.h5 tax7.h5)
-  CHECKFILE (twithub513_u511 tall.h5 tax7.h5)
-#  CLEANUP (twithub513_u511 tax7.h5)
-  JAMTEST (twithub513_u512 u512.txt twithub513.h5 tax8.h5)
-  CHECKFILE (twithub513_u512 tall.h5 tax8.h5)
-#  CLEANUP (twithub513_u512 tax8.h5)
-  JAMTEST (twithub513_u513 u513.txt twithub513.h5 tax9.h5)
-  CHECKFILE (twithub513_u513 tall.h5 tax9.h5)
-#  CLEANUP (twithub513_u513 tax9.h5)
-
-  JAMTEST (twithub_u10_c u10.txt twithub.h5 taz2.h5 --clobber)
-  CHECKFILE (twithub_u10_c tall.h5 taz2.h5)
-#  CLEANUP (twithub_u10_c taz2.h5)
-  JAMTEST (twithub_u511_c u511.txt twithub.h5 taz3.h5 --clobber)
-  CHECKFILE (twithub_u511_c tall.h5 taz3.h5)
-#  CLEANUP (twithub_u511_c taz3.h5)
-  JAMTEST (twithub_u512_c u512.txt twithub.h5 taz4.h5 --clobber)
-  CHECKFILE (twithub_u512_c tall.h5 taz4.h5)
-#  CLEANUP (twithub_u512_c taz4.h5)
-  JAMTEST (twithub_u513_c u513.txt twithub.h5 taz5.h5 --clobber)
-  CHECKFILE (twithub_u513_c tall.h5 taz5.h5)
-#  CLEANUP (twithub_u513_c taz5.h5)
-
-  JAMTEST (twithub513_u10_c u10.txt twithub513.h5 taz6.h5 --clobber)
-  CHECKFILE (twithub513_u10_c tall.h5 taz6.h5)
-#  CLEANUP (twithub513_u10_c taz6.h5)
-  JAMTEST (twithub513_u511_c u511.txt twithub513.h5 taz7.h5 --clobber)
-  CHECKFILE (twithub513_u511_c tall.h5 taz7.h5)
-#  CLEANUP (twithub513_u511_c taz7.h5)
-  JAMTEST (twithub513_u512_c u512.txt twithub513.h5 taz8.h5 --clobber)
-  CHECKFILE (twithub513_u512_c tall.h5 taz8.h5)
-#  CLEANUP (twithub513_u512_c taz8.h5)
-  JAMTEST (twithub513_u513_c u513.txt twithub513.h5 taz9.h5 --clobber)
-  CHECKFILE (twithub513_u513_c tall.h5 taz9.h5)
-#  CLEANUP (twithub513_u513_c taz9.h5)
-
-  SETUP (N_twithub_u10_c twithub.h5 tay2.h5)
-  JAMTEST (N_twithub_u10_c u10.txt tay2.h5 NONE --clobber)
-  CHECKFILE (N_twithub_u10_c tall.h5 tay2.h5)
-#  CLEANUP (N_twithub_u10_c tay2.h5)
-  SETUP (N_twithub_u511_c twithub.h5 tay3.h5)
-  JAMTEST (N_twithub_u511_c u511.txt tay3.h5 NONE --clobber)
-  CHECKFILE (N_twithub_u511_c tall.h5 tay3.h5)
-#  CLEANUP (N_twithub_u511_c tay3.h5)
-  SETUP (N_twithub_u512_c twithub.h5 tay4.h5)
-  JAMTEST (N_twithub_u512_c u512.txt tay4.h5 NONE --clobber)
-  CHECKFILE (N_twithub_u512_c tall.h5 tay4.h5)
-#  CLEANUP (N_twithub_u512_c tay4.h5)
-  SETUP (N_twithub_u513_c twithub.h5 tay5.h5)
-  JAMTEST (N_twithub_u513_c u513.txt tay5.h5 NONE --clobber)
-  CHECKFILE (N_twithub_u513_c tall.h5 tay5.h5)
-#  CLEANUP (N_twithub_u513_c tay5.h5)
-
-  SETUP (N_twithub513_u10_c twithub513.h5 tay6.h5)
-  JAMTEST (N_twithub513_u10_c u10.txt tay6.h5 NONE --clobber)
-  CHECKFILE (N_twithub513_u10_c tall.h5 tay6.h5)
-#  CLEANUP (N_twithub513_u10_c tay6.h5)
-  SETUP (N_twithub513_u511_c twithub513.h5 tay7.h5)
-  JAMTEST (N_twithub513_u511_c u511.txt tay7.h5 NONE --clobber)
-  CHECKFILE (N_twithub513_u511_c tall.h5 tay7.h5)
-#  CLEANUP (N_twithub513_u511_c tay7.h5)
-  SETUP (N_twithub513_u512_c twithub513.h5 tay8.h5)
-  JAMTEST (N_twithub513_u512_c u512.txt tay8.h5 NONE --clobber)
-  CHECKFILE (N_twithub513_u512_c tall.h5 tay8.h5)
-#  CLEANUP (N_twithub513_u512_c tay8.h5)
-  SETUP (N_twithub513_u513_c twithub513.h5 tay9.h5)
-  JAMTEST (N_twithub513_u513_c u513.txt tay9.h5 NONE --clobber)
-  CHECKFILE (N_twithub513_u513_c tall.h5 tay9.h5)
-#  CLEANUP (N_twithub513_u513_c tay9.h5)
+  JAMTEST (tall_u10 u10.txt tall.h5 tall.h5 ta2.h5)
+  JAMTEST (tall_u511 u511.txt tall.h5 tall.h5 ta3.h5)
+  JAMTEST (tall_u512 u512.txt tall.h5 tall.h5 ta4.h5)
+  JAMTEST (tall_u513 u513.txt tall.h5 tall.h5 ta5.h5)
+
+  JAMTEST_NONE (N_ta_u10 u10.txt tall.h5 tall.h5 ta6.h5)
+  JAMTEST_NONE (N_ta_u511 u511.txt tall.h5 tall.h5 ta7.h5)
+  JAMTEST_NONE (N_ta_u512 u512.txt tall.h5 tall.h5 ta8.h5)
+  JAMTEST_NONE (N_ta_u513 u513.txt tall.h5 tall.h5 ta9.h5)
+
+  JAMTEST (twithub_u10 u10.txt twithub.h5 tall.h5 tax2.h5)
+  JAMTEST (twithub_u511 u511.txt twithub.h5 tall.h5 tax3.h5)
+  JAMTEST (twithub_u512 u512.txt twithub.h5 tall.h5 tax4.h5)
+  JAMTEST (twithub_u513 u513.txt twithub.h5 tall.h5 tax5.h5)
+
+  JAMTEST (twithub513_u10 u10.txt twithub513.h5 tall.h5 tax6.h5)
+  JAMTEST (twithub513_u511 u511.txt twithub513.h5 tall.h5 tax7.h5)
+  JAMTEST (twithub513_u512 u512.txt twithub513.h5 tall.h5 tax8.h5)
+  JAMTEST (twithub513_u513 u513.txt twithub513.h5 tall.h5 tax9.h5)
+
+  JAMTEST (twithub_u10_c u10.txt twithub.h5 tall.h5 taz2.h5 --clobber)
+  JAMTEST (twithub_u511_c u511.txt twithub.h5 tall.h5 taz3.h5 --clobber)
+  JAMTEST (twithub_u512_c u512.txt twithub.h5 tall.h5 taz4.h5 --clobber)
+  JAMTEST (twithub_u513_c u513.txt twithub.h5 tall.h5 taz5.h5 --clobber)
+
+  JAMTEST (twithub513_u10_c u10.txt twithub513.h5 tall.h5 taz6.h5 --clobber)
+  JAMTEST (twithub513_u511_c u511.txt twithub513.h5 tall.h5 taz7.h5 --clobber)
+  JAMTEST (twithub513_u512_c u512.txt twithub513.h5 tall.h5 taz8.h5 --clobber)
+  JAMTEST (twithub513_u513_c u513.txt twithub513.h5 tall.h5 taz9.h5 --clobber)
+
+  JAMTEST_NONE (N_twithub_u10_c u10.txt tall.h5 twithub.h5 tay2.h5 --clobber)
+  JAMTEST_NONE (N_twithub_u511_c u511.txt tall.h5 twithub.h5 tay3.h5 --clobber)
+  JAMTEST_NONE (N_twithub_u512_c u512.txt tall.h5 twithub.h5 tay4.h5 --clobber)
+  JAMTEST_NONE (N_twithub_u513_c u513.txt tall.h5 twithub.h5 tay5.h5 --clobber)
+
+  JAMTEST_NONE (N_twithub513_u10_c u10.txt tall.h5 twithub513.h5 tay6.h5 --clobber)
+  JAMTEST_NONE (N_twithub513_u511_c u511.txt tall.h5 twithub513.h5 tay7.h5 --clobber)
+  JAMTEST_NONE (N_twithub513_u512_c u512.txt tall.h5 twithub513.h5 tay8.h5 --clobber)
+  JAMTEST_NONE (N_twithub513_u513_c u513.txt tall.h5 twithub513.h5 tay9.h5 --clobber)
 
 #-------------------------------
 # Testing h5unjam
@@ -496,32 +468,14 @@ IF (BUILD_TESTING)
   # help page
   TEST_H5UNJAM_OUTPUT(h5unjam-help 0 -h)
 
-  SETUP (twithub_tall twithub.h5 tai1.h5)
-  UNJAMTEST (twithub_tall tai1.h5 o10.txt taa1.h5)
-  CHECKFILE (twithub_tall tall.h5 taa1.h5)
-#  CLEANUP (twithub_tall taa1.h5 tai1.h5 o10.txt)
-  SETUP (twithub513_tall twithub513.h5 tai2.h5)
-  UNJAMTEST (twithub513_tall tai2.h5 o512.txt taa2.h5)
-  CHECKFILE (twithub513_tall tall.h5 taa2.h5)
-#  CLEANUP (twithub513_tall taa2.h5 tai2.h5 o512.txt)
-
-  SETUP (N_twithub_tall twithub.h5 tai3.h5)
-  UNJAMTEST (N_twithub_tall tai3.h5 NONE taa3.h5)
-  CHECKFILE (N_twithub_tall tall.h5 taa3.h5)
-#  CLEANUP (N_twithub_tall taa3.h5 tai3.h5)
-  SETUP (N_twithub513_tall twithub513.h5 tai4.h5)
-  UNJAMTEST (N_twithub513_tall tai4.h5 NONE taa4.h5)
-  CHECKFILE (N_twithub513_tall tall.h5 taa4.h5)
-#  CLEANUP (N_twithub513_tall taa4.h5 tai4.h5)
-
-  SETUP (D_twithub_tall twithub.h5 taj2.h5)
-  UNJAMTEST (D_twithub_tall taj2.h5 NONE tac2.h5 --delete)
-  CHECKFILE (D_twithub_tall tall.h5 tac2.h5)
-#  CLEANUP (D_twithub_tall tac2.h5 taj2.h5)
-  SETUP (D_twithub513_tall twithub513.h5 taj3.h5)
-  UNJAMTEST (D_twithub513_tall taj3.h5 NONE tac3.h5 --delete)
-  CHECKFILE (D_twithub513_tall tall.h5 tac3.h5)
-#  CLEANUP (D_twithub513_tall tac3.h5 taj3.h5)
+  UNJAMTEST (twithub_tall twithub.h5 tai1.h5 o10.txt tall.h5 taa1.h5)
+  UNJAMTEST (twithub513_tall twithub513.h5 tai2.h5 o512.txt tall.h5 taa2.h5)
+
+  UNJAMTEST (N_twithub_tall twithub.h5 tai3.h5 NONE tall.h5 taa3.h5)
+  UNJAMTEST (N_twithub513_tall twithub513.h5 tai4.h5 NONE tall.h5 taa4.h5)
+
+  UNJAMTEST (D_twithub_tall twithub.h5 taj2.h5 NONE tall.h5 tac2.h5 --delete)
+  UNJAMTEST (D_twithub513_tall twithub513.h5 taj3.h5 NONE tall.h5 tac3.h5 --delete)
 
 ENDIF (BUILD_TESTING)
 
diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in
index 96b4190..2683342 100644
--- a/tools/h5jam/Makefile.in
+++ b/tools/h5jam/Makefile.in
@@ -240,6 +240,7 @@ H5_VERSION = @H5_VERSION@
 HADDR_T = @HADDR_T@
 HAVE_DMALLOC = @HAVE_DMALLOC@
 HAVE_FORTRAN_2003 = @HAVE_FORTRAN_2003@
+HAVE_PTHREAD = @HAVE_PTHREAD@
 HDF5_HL = @HDF5_HL@
 HDF5_INTERFACES = @HDF5_INTERFACES@
 HDF_CXX = @HDF_CXX@
@@ -291,7 +292,6 @@ PACKAGE_VERSION = @PACKAGE_VERSION@
 PARALLEL = @PARALLEL@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PERL = @PERL@
-PTHREAD = @PTHREAD@
 RANLIB = @RANLIB@
 ROOT = @ROOT@
 RUNPARALLEL = @RUNPARALLEL@
diff --git a/tools/h5jam/h5unjam.c b/tools/h5jam/h5unjam.c
index 86ff897..9641378 100644
--- a/tools/h5jam/h5unjam.c
+++ b/tools/h5jam/h5unjam.c
@@ -43,14 +43,14 @@ static const char *s_opts = "hu:i:o:d:V";
 static struct long_options l_opts[] = {
     { "help", no_arg, 'h' },
     { "hel", no_arg, 'h' },
-  {"i", require_arg, 'i'},  /* input file */
-  {"u", require_arg, 'u'},  /* user block file */
-  {"o", require_arg, 'o'},  /* output file */
-  {"delete", no_arg, 'd'},  /* delete ub */
-  {"delet", no_arg, 'd'},
-  {"dele", no_arg, 'd'},
-  {"del", no_arg, 'd'},
-  {"de", no_arg, 'd'},
+    {"i", require_arg, 'i'},    /* input file */
+    {"u", require_arg, 'u'},    /* user block file */
+    {"o", require_arg, 'o'},    /* output file */
+    {"delete", no_arg, 'd'},    /* delete ub */
+    {"delet", no_arg, 'd'},
+    {"dele", no_arg, 'd'},
+    {"del", no_arg, 'd'},
+    {"de", no_arg, 'd'},
     { NULL, 0, '\0' }
 };
 
@@ -123,86 +123,69 @@ usage(const char *prog)
 }
 
 /*-------------------------------------------------------------------------
- * Function:    leave
- *
- * Purpose:     Shutdown and call exit()
- *
- * Return:      Does not return
- *
- *-------------------------------------------------------------------------
- */
-static void
-leave(int ret)
-{
-    if (ub_file)
-        HDfree (ub_file);
-    if (input_file)
-        HDfree (input_file);
-    if (output_file)
-        HDfree (output_file);
-
-    h5tools_close();
-
-    HDexit(ret);
-}
-
-/*-------------------------------------------------------------------------
  * Function:    parse_command_line
  *
  * Purpose:     Parse the command line for the h5dumper.
  *
- * Return:      Success:
+ * Return:      Success:    EXIT_SUCCESS;
  *
- *              Failure:    Exits program with EXIT_FAILURE value.
- *
- * Programmer:
- *
- * Modifications:
+ *              Failure:    Exits function with EXIT_FAILURE value.
  *
  *-------------------------------------------------------------------------
  */
-
-static void
+static int
 parse_command_line(int argc, const char *argv[])
 {
     int opt = FALSE;
 
     /* parse command line options */
     while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
-        switch ((char) opt) {
-        case 'o':
-            output_file = HDstrdup (opt_arg);
-            break;
-        case 'i':
-            input_file = HDstrdup (opt_arg);
-            break;
-        case 'u':
-            ub_file = HDstrdup (opt_arg);
-            break;
-        case 'd':
-            do_delete = TRUE;
-            break;
-        case 'h':
-            usage(h5tools_getprogname());
-            leave(EXIT_SUCCESS);
-        case 'V':
-            print_version(h5tools_getprogname());
-            leave(EXIT_SUCCESS);
-        case '?':
-        default:
-            usage(h5tools_getprogname());
-            leave(EXIT_FAILURE);
+        switch((char)opt) {
+            case 'o':
+                output_file = HDstrdup(opt_arg);
+                break;
+
+            case 'i':
+                input_file = HDstrdup(opt_arg);
+                break;
+
+            case 'u':
+                ub_file = HDstrdup(opt_arg);
+                break;
+
+            case 'd':
+                do_delete = TRUE;
+                break;
+
+            case 'h':
+                usage(h5tools_getprogname());
+                h5tools_setstatus(EXIT_SUCCESS);
+                goto done;
+
+            case 'V':
+                print_version (h5tools_getprogname());
+                h5tools_setstatus(EXIT_SUCCESS);
+                goto done;
+
+            case '?':
+            default:
+                usage(h5tools_getprogname());
+                h5tools_setstatus(EXIT_FAILURE);
+                goto done;
         }
     }
 
-    /* check for file name to be processed */
-/*
-    if (argc <= opt_ind+2) {
-        error_msg("missing file name\n");
-        usage(h5tools_getprogname());
-        HDexit(EXIT_FAILURE);
-    }
-*/
+    return EXIT_SUCCESS;
+    
+done:
+    if(input_file)
+        HDfree(input_file);
+    if(output_file)
+        HDfree(output_file);
+    if(ub_file)
+        HDfree(ub_file);
+
+    return EXIT_FAILURE;
 }
 
 /*-------------------------------------------------------------------------
@@ -246,13 +229,15 @@ main(int argc, const char *argv[])
     /* Initialize h5tools lib */
     h5tools_init();
 
-    parse_command_line(argc, argv);
+    if(EXIT_FAILURE == parse_command_line(argc, argv))
+        goto done;
 
     if (input_file == NULL) {
         /* no user block */
         error_msg("missing arguemnt for HDF5 file input.\n");
         help_ref_msg(stderr);
-        leave (EXIT_FAILURE);
+        h5tools_setstatus(EXIT_FAILURE);
+        goto done;
     }
 
     testval = H5Fis_accessible(input_file, H5P_DEFAULT);
@@ -286,8 +271,10 @@ main(int argc, const char *argv[])
         goto done;
     }
 
-    H5Pclose(plist);
-    H5Fclose(ifile);
+    status = H5Pclose(plist);
+    HDassert(status >= 0);
+    status = H5Fclose(ifile);
+    HDassert(status >= 0);
 
     if (usize == 0) {
   /* no user block to remove: message? */
@@ -371,17 +358,25 @@ main(int argc, const char *argv[])
     }
 
 done:
-    if (ub_file) {
-        HDfree (ub_file);
-        if (ufid >= 0) HDclose(ufid);
+    if(input_file)
+        HDfree(input_file);
+    if(output_file)
+        HDfree(output_file);
+    if(ub_file) {
+        HDfree(ub_file);
+        if(ufid >= 0)
+            status = HDclose(ufid);
+            HDassert(status >= 0);
     }
-    if (input_file)
-        HDfree (input_file);
-    if (output_file)
-        HDfree (output_file);
 
-    if (h5fid >= 0) HDclose(h5fid);
-    if (ifid >= 0) HDclose(ifid);
+    if(h5fid >= 0) {
+        status = HDclose(h5fid);
+        HDassert(status >= 0);
+    }
+    if(ifid >= 0) {
+        status = HDclose(ifid);
+        HDassert(status >= 0);
+    }
 
     return h5tools_getstatus();
 }
diff --git a/tools/h5jam/testh5jam.sh.in b/tools/h5jam/testh5jam.sh.in
index b2c6bec..86edbee 100644
--- a/tools/h5jam/testh5jam.sh.in
+++ b/tools/h5jam/testh5jam.sh.in
@@ -377,7 +377,7 @@ JAMTEST() {
 			compare_orig="xxofile.h5"
 			cleanup="$cleanup $compare_orig"
 		else
-			# output goes to $4,  compare ofile to ubfile
+			# output goes to $3,  compare ofile to ubfile
 			ofile="$3"
 			compare_test="$ofile"
 			compare_orig="$ifile"
@@ -539,19 +539,22 @@ JAMTEST $TESTDIR/u513.txt $TESTDIR/tall.h5 ta5.h5
 CHECKFILE $TESTDIR/tall.h5 ta5.h5
 CLEANUP ta5.h5
 
-SETUP $TESTDIR/tall.h5 ta.h5
-JAMTEST $TESTDIR/u10.txt ta.h5 
-CHECKFILE $TESTDIR/tall.h5 ta.h5
-SETUP $TESTDIR/tall.h5 ta.h5
-JAMTEST $TESTDIR/u511.txt ta.h5 
-CHECKFILE $TESTDIR/tall.h5 ta.h5
-SETUP $TESTDIR/tall.h5 ta.h5
-JAMTEST $TESTDIR/u512.txt ta.h5 
-CHECKFILE $TESTDIR/tall.h5 ta.h5
-SETUP $TESTDIR/tall.h5 ta.h5
-JAMTEST $TESTDIR/u513.txt ta.h5 
-CHECKFILE $TESTDIR/tall.h5 ta.h5
-CLEANUP ta.h5
+SETUP $TESTDIR/tall.h5 ta6.h5
+JAMTEST $TESTDIR/u10.txt ta6.h5 
+CHECKFILE $TESTDIR/tall.h5 ta6.h5
+CLEANUP ta6.h5
+SETUP $TESTDIR/tall.h5 ta7.h5
+JAMTEST $TESTDIR/u511.txt ta7.h5 
+CHECKFILE $TESTDIR/tall.h5 ta7.h5
+CLEANUP ta7.h5
+SETUP $TESTDIR/tall.h5 ta8.h5
+JAMTEST $TESTDIR/u512.txt ta8.h5 
+CHECKFILE $TESTDIR/tall.h5 ta8.h5
+CLEANUP ta8.h5
+SETUP $TESTDIR/tall.h5 ta9.h5
+JAMTEST $TESTDIR/u513.txt ta9.h5 
+CHECKFILE $TESTDIR/tall.h5 ta9.h5
+CLEANUP ta9.h5
 
 JAMTEST $TESTDIR/u10.txt $TESTDIR/twithub.h5 tax2.h5
 CHECKFILE $TESTDIR/tall.h5 tax2.h5