[svn-r17345] Purpose:

    Updating autotools

Description:

    Installed new autotools and used them to reconfigure HDF5.

    - Automake upgraded to 1.11
    - Autoconf upgraded to 2.64
    - bin/reconfigure script edited to use new versions (on jam), and
      run to generate new configure script and Makefile.in's.
    - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings
      (in order to comply with new autoconf standard).
    
Tested:

    Tested on machines jam, smirom, liberty, linew.
    Tested w/ features c++, fortran, parallel.
    Tested w/ compilers gcc, pgcc, icc.

    Further testing via Daily Tests should catch any other outliers. Upon
    passing DT's, I'll propogate the new tools into 1.8, hdf4, et cetera.

1 files changed, 97 insertions, 49 deletions

diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in
index f2dec7d..12486a0 100644
--- a/tools/h5jam/Makefile.in
+++ b/tools/h5jam/Makefile.in
@@ -1,8 +1,9 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# Makefile.in generated by automake 1.11 from Makefile.am.
 # @configure_input@
 
 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009  Free Software Foundation,
+# Inc.
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.
@@ -33,8 +34,9 @@
 
 VPATH = @srcdir@
 pkgdatadir = $(datadir)/@PACKAGE@
-pkglibdir = $(libdir)/@PACKAGE@
 pkgincludedir = $(includedir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
 install_sh_DATA = $(install_sh) -c -m 644
 install_sh_PROGRAM = $(install_sh) -c
@@ -63,8 +65,8 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/src/H5config.h
 CONFIG_CLEAN_FILES = testh5jam.sh
+CONFIG_CLEAN_VPATH_FILES =
 am__installdirs = "$(DESTDIR)$(bindir)"
-binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
 PROGRAMS = $(bin_PROGRAMS)
 getub_SOURCES = getub.c
 getub_OBJECTS = getub.$(OBJEXT)
@@ -95,6 +97,7 @@ tellub_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5)
 DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src
 depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
 am__depfiles_maybe = depfiles
+am__mv = mv -f
 COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
 LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
@@ -108,6 +111,8 @@ SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c
 DIST_SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c
 ETAGS = etags
 CTAGS = ctags
+am__tty_colors = \
+red=; grn=; lgn=; blu=; std=
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
@@ -222,6 +227,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
 PACKAGE_NAME = @PACKAGE_NAME@
 PACKAGE_STRING = @PACKAGE_STRING@
 PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PARALLEL = @PARALLEL@
 PATH_SEPARATOR = @PATH_SEPARATOR@
@@ -313,6 +319,7 @@ sharedstatedir = @sharedstatedir@
 srcdir = @srcdir@
 sysconfdir = @sysconfdir@
 target_alias = @target_alias@
+top_build_prefix = @top_build_prefix@
 top_builddir = @top_builddir@
 top_srcdir = @top_srcdir@
 
@@ -403,9 +410,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir
 	      exit 1;; \
 	  esac; \
 	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign  tools/h5jam/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --foreign  tools/h5jam/Makefile
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5jam/Makefile'; \
+	$(am__cd) $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign tools/h5jam/Makefile
 .PRECIOUS: Makefile
 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	@case '$?' in \
@@ -423,43 +430,61 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(am__aclocal_m4_deps):
 testh5jam.sh: $(top_builddir)/config.status $(srcdir)/testh5jam.sh.in
 	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
 install-binPROGRAMS: $(bin_PROGRAMS)
 	@$(NORMAL_INSTALL)
 	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_PROGRAMS)'; for p in $$list; do \
-	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
-	  if test -f $$p \
-	     || test -f $$p1 \
-	  ; then \
-	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
-	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
-	  else :; fi; \
-	done
+	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
+	for p in $$list; do echo "$$p $$p"; done | \
+	sed 's/$(EXEEXT)$$//' | \
+	while read p p1; do if test -f $$p || test -f $$p1; \
+	  then echo "$$p"; echo "$$p"; else :; fi; \
+	done | \
+	sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \
+	    -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
+	sed 'N;N;N;s,\n, ,g' | \
+	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
+	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
+	    if ($$2 == $$4) files[d] = files[d] " " $$1; \
+	    else { print "f", $$3 "/" $$4, $$1; } } \
+	  END { for (d in files) print "f", d, files[d] }' | \
+	while read type dir files; do \
+	    if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
+	    test -z "$$files" || { \
+	    echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
+	    $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
+	    } \
+	; done
 
 uninstall-binPROGRAMS:
 	@$(NORMAL_UNINSTALL)
-	@list='$(bin_PROGRAMS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
+	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
+	files=`for p in $$list; do echo "$$p"; done | \
+	  sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
+	      -e 's/$$/$(EXEEXT)/' `; \
+	test -n "$$list" || exit 0; \
+	echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
+	cd "$(DESTDIR)$(bindir)" && rm -f $$files
 
 clean-binPROGRAMS:
-	@list='$(bin_PROGRAMS)'; for p in $$list; do \
-	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
-	  echo " rm -f $$p $$f"; \
-	  rm -f $$p $$f ; \
-	done
+	@list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \
+	echo " rm -f" $$list; \
+	rm -f $$list || exit $$?; \
+	test -n "$(EXEEXT)" || exit 0; \
+	list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
+	echo " rm -f" $$list; \
+	rm -f $$list
 
 clean-checkPROGRAMS:
-	@list='$(check_PROGRAMS)'; for p in $$list; do \
-	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
-	  echo " rm -f $$p $$f"; \
-	  rm -f $$p $$f ; \
-	done
+	@list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \
+	echo " rm -f" $$list; \
+	rm -f $$list || exit $$?; \
+	test -n "$(EXEEXT)" || exit 0; \
+	list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
+	echo " rm -f" $$list; \
+	rm -f $$list
 getub$(EXEEXT): $(getub_OBJECTS) $(getub_DEPENDENCIES) 
 	@rm -f getub$(EXEEXT)
 	$(LINK) $(getub_OBJECTS) $(getub_LDADD) $(LIBS)
@@ -490,21 +515,21 @@ distclean-compile:
 
 .c.o:
 @am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
-@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(COMPILE) -c $<
 
 .c.obj:
 @am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
-@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(COMPILE) -c `$(CYGPATH_W) '$<'`
 
 .c.lo:
 @am__fastdepCC_TRUE@	$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
-@am__fastdepCC_TRUE@	mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(LTCOMPILE) -c -o $@ $<
@@ -527,7 +552,7 @@ tags: TAGS
 
 TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
 		$(TAGS_FILES) $(LISP)
-	tags=; \
+	set x; \
 	here=`pwd`; \
 	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
 	unique=`for i in $$list; do \
@@ -535,29 +560,34 @@ TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
 	  done | \
 	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
 	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
+	shift; \
+	if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
 	  test -n "$$unique" || unique=$$empty_fix; \
-	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
-	    $$tags $$unique; \
+	  if test $$# -gt 0; then \
+	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	      "$$@" $$unique; \
+	  else \
+	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	      $$unique; \
+	  fi; \
 	fi
 ctags: CTAGS
 CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
 		$(TAGS_FILES) $(LISP)
-	tags=; \
 	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
 	unique=`for i in $$list; do \
 	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 	  done | \
 	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
 	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	test -z "$(CTAGS_ARGS)$$tags$$unique" \
+	test -z "$(CTAGS_ARGS)$$unique" \
 	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
-	     $$tags $$unique
+	     $$unique
 
 GTAGS:
 	here=`$(am__cd) $(top_builddir) && pwd` \
-	  && cd $(top_srcdir) \
-	  && gtags -i $(GTAGS_ARGS) $$here
+	  && $(am__cd) $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) "$$here"
 
 distclean-tags:
 	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
@@ -578,13 +608,17 @@ distdir: $(DISTFILES)
 	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
 	  if test -d $$d/$$file; then \
 	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d "$(distdir)/$$file"; then \
+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+	    fi; \
 	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
+	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
 	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
 	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
+	    test -f "$(distdir)/$$file" \
+	    || cp -p $$d/$$file "$(distdir)/$$file" \
 	    || exit 1; \
 	  fi; \
 	done
@@ -617,6 +651,7 @@ clean-generic:
 
 distclean-generic:
 	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
 	-test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES)
 
 maintainer-clean-generic:
@@ -639,6 +674,8 @@ dvi-am:
 
 html: html-am
 
+html-am:
+
 info: info-am
 
 info-am:
@@ -647,18 +684,28 @@ install-data-am:
 
 install-dvi: install-dvi-am
 
+install-dvi-am:
+
 install-exec-am: install-binPROGRAMS
 
 install-html: install-html-am
 
+install-html-am:
+
 install-info: install-info-am
 
+install-info-am:
+
 install-man:
 
 install-pdf: install-pdf-am
 
+install-pdf-am:
+
 install-ps: install-ps-am
 
+install-ps-am:
+
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
@@ -681,7 +728,7 @@ ps-am:
 
 uninstall-am: uninstall-binPROGRAMS
 
-.MAKE: install-am install-strip
+.MAKE: check-am install-am install-strip
 
 .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \
 	clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
@@ -904,6 +951,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS)
 	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
 	    fi;                                                               \
 	done
+
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.
 .NOEXPORT: