diff options
author | Albert Cheng <acheng@hdfgroup.org> | 2008-02-01 05:51:09 (GMT) |
---|---|---|
committer | Albert Cheng <acheng@hdfgroup.org> | 2008-02-01 05:51:09 (GMT) |
commit | 76958a8e308fc1f0b80929f30dcee9ef43fa3cec (patch) | |
tree | 8637d1546652fbbb62ed77f9b03b0930d9dc8356 /tools/h5recover | |
parent | 76cdc6c1ca9d35c7d27f038ede949c70560fdece (diff) | |
download | hdf5-76958a8e308fc1f0b80929f30dcee9ef43fa3cec.zip hdf5-76958a8e308fc1f0b80929f30dcee9ef43fa3cec.tar.gz hdf5-76958a8e308fc1f0b80929f30dcee9ef43fa3cec.tar.bz2 |
[svn-r14483] Added the new tool, h5recover, which is for the Sandia project for
file recovery after a crash.
Tested:
linux (kagiso), linux64 (smirom), Solaris 10 (linew, in progress).
Diffstat (limited to 'tools/h5recover')
-rw-r--r-- | tools/h5recover/Makefile.am | 48 | ||||
-rw-r--r-- | tools/h5recover/Makefile.in | 856 | ||||
-rw-r--r-- | tools/h5recover/testh5recover.sh.in | 124 | ||||
-rw-r--r-- | tools/h5recover/trecover.h | 30 | ||||
-rw-r--r-- | tools/h5recover/trecover_crasher.c | 42 | ||||
-rw-r--r-- | tools/h5recover/trecover_main.c | 28 | ||||
-rw-r--r-- | tools/h5recover/trecover_writer.c | 157 |
7 files changed, 1285 insertions, 0 deletions
diff --git a/tools/h5recover/Makefile.am b/tools/h5recover/Makefile.am new file mode 100644 index 0000000..9be9908 --- /dev/null +++ b/tools/h5recover/Makefile.am @@ -0,0 +1,48 @@ +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from help@hdfgroup.org. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +# +# HDF5 tools/h5recover Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# Include files in /src directory and /tools/lib directory +INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib + +# Test programs and scripts +TEST_PROG=trecover +TEST_SCRIPT=testh5recover.sh + +check_PROGRAMS=$(TEST_PROG) +check_SCRIPTS=$(TEST_SCRIPT) +SCRIPT_DEPEND=trecover$(EXEEXT) + +# Source files for the program +trecover_SOURCES=trecover_main.c trecover_writer.c trecover_crasher.c + +# Our main target, the h5recover tool. +# h5recover source is not ready yet. +bin_PROGRAMS=#h5recover + +# All the programs depend on the hdf5 and h5tools libraries +LDADD=$(LIBH5TOOLS) $(LIBHDF5) + +# Temporary files. *.h5 are generated by h5recover. +CHECK_CLEANFILES+=*.h5 +DISTCLEANFILES=testh5recover.sh + +include $(top_srcdir)/config/conclude.am diff --git a/tools/h5recover/Makefile.in b/tools/h5recover/Makefile.in new file mode 100644 index 0000000..f1c37cd --- /dev/null +++ b/tools/h5recover/Makefile.in @@ -0,0 +1,856 @@ +# Makefile.in generated by automake 1.10 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, +# 2003, 2004, 2005, 2006 Free Software Foundation, Inc. +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from help@hdfgroup.org. +# +# HDF5 tools/h5recover Makefile(.in) +# + +VPATH = @srcdir@ +pkgdatadir = $(datadir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkgincludedir = $(includedir)/@PACKAGE@ +am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd +install_sh_DATA = $(install_sh) -c -m 644 +install_sh_PROGRAM = $(install_sh) -c +install_sh_SCRIPT = $(install_sh) -c +INSTALL_HEADER = $(INSTALL_DATA) +transform = $(program_transform_name) +NORMAL_INSTALL = : +PRE_INSTALL = : +POST_INSTALL = : +NORMAL_UNINSTALL = : +PRE_UNINSTALL = : +POST_UNINSTALL = : +build_triplet = @build@ +host_triplet = @host@ +DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/testh5recover.sh.in $(top_srcdir)/config/commence.am \ + $(top_srcdir)/config/conclude.am +check_PROGRAMS = $(am__EXEEXT_1) +bin_PROGRAMS = +TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +subdir = tools/h5recover +ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 +am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) +mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs +CONFIG_HEADER = $(top_builddir)/src/H5config.h +CONFIG_CLEAN_FILES = testh5recover.sh +am__installdirs = "$(DESTDIR)$(bindir)" +binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) +am__EXEEXT_1 = trecover$(EXEEXT) +PROGRAMS = $(bin_PROGRAMS) +am_trecover_OBJECTS = trecover_main.$(OBJEXT) \ + trecover_writer.$(OBJEXT) trecover_crasher.$(OBJEXT) +trecover_OBJECTS = $(am_trecover_OBJECTS) +trecover_LDADD = $(LDADD) +trecover_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +DEFAULT_INCLUDES = -I. -I$(top_builddir)/src@am__isrc@ +depcomp = $(SHELL) $(top_srcdir)/bin/depcomp +am__depfiles_maybe = depfiles +COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \ + $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +CCLD = $(CC) +LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \ + $(LDFLAGS) -o $@ +SOURCES = $(trecover_SOURCES) +DIST_SOURCES = $(trecover_SOURCES) +ETAGS = etags +CTAGS = ctags +DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) +ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ +AMTAR = @AMTAR@ +AM_MAKEFLAGS = @AM_MAKEFLAGS@ +AR = @AR@ + +# Set the paths for AFS installs of autotools for Linux machines +# Ideally, these tools should never be needed during the build. +AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf +AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader +AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AWK = @AWK@ +BYTESEX = @BYTESEX@ +CC = @CC@ +CCDEPMODE = @CCDEPMODE@ +CC_VERSION = @CC_VERSION@ + +# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5, +# but which shouldn't be exported to h5cc for building other programs. +CFLAGS = @CFLAGS@ @H5_CFLAGS@ +CLEARFILEBUF = @CLEARFILEBUF@ +CONFIG_DATE = @CONFIG_DATE@ +CONFIG_MODE = @CONFIG_MODE@ +CONFIG_USER = @CONFIG_USER@ +CPP = @CPP@ +CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@ +CXX = @CXX@ +CXXCPP = @CXXCPP@ +CXXDEPMODE = @CXXDEPMODE@ +CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@ +CYGPATH_W = @CYGPATH_W@ +DEBUG_PKG = @DEBUG_PKG@ +DEFAULT_API_VERSION = @DEFAULT_API_VERSION@ +DEFS = @DEFS@ +DEPDIR = @DEPDIR@ +DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@ +DYNAMIC_DIRS = @DYNAMIC_DIRS@ +ECHO = @ECHO@ +ECHO_C = @ECHO_C@ +ECHO_N = @ECHO_N@ +ECHO_T = @ECHO_T@ +EGREP = @EGREP@ +EXEEXT = @EXEEXT@ +F77 = @F77@ + +# Make sure that these variables are exported to the Makefiles +F9XMODEXT = @F9XMODEXT@ +F9XMODFLAG = @F9XMODFLAG@ +F9XSUFFIXFLAG = @F9XSUFFIXFLAG@ +FC = @FC@ +FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@ +FCFLAGS_f90 = @FCFLAGS_f90@ +FCLIBS = @FCLIBS@ +FFLAGS = @FFLAGS@ +FILTERS = @FILTERS@ +FSEARCH_DIRS = @FSEARCH_DIRS@ +GREP = @GREP@ +H5_CFLAGS = @H5_CFLAGS@ +H5_CPPFLAGS = @H5_CPPFLAGS@ +H5_CXXFLAGS = @H5_CXXFLAGS@ +H5_FCFLAGS = @H5_FCFLAGS@ +H5_LONE_COLON = @H5_LONE_COLON@ +H5_VERSION = @H5_VERSION@ +HADDR_T = @HADDR_T@ +HDF5_INTERFACES = @HDF5_INTERFACES@ +HID_T = @HID_T@ +HL = @HL@ +HL_FOR = @HL_FOR@ +HSIZET = @HSIZET@ +HSIZE_T = @HSIZE_T@ +HSSIZE_T = @HSSIZE_T@ +INSTALL = @INSTALL@ +INSTALL_DATA = @INSTALL_DATA@ +INSTALL_PROGRAM = @INSTALL_PROGRAM@ +INSTALL_SCRIPT = @INSTALL_SCRIPT@ +INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ +INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ +LDFLAGS = @LDFLAGS@ +LIBOBJS = @LIBOBJS@ +LIBS = @LIBS@ +LIBTOOL = @LIBTOOL@ +LN_S = @LN_S@ +LTLIBOBJS = @LTLIBOBJS@ +LT_STATIC_EXEC = @LT_STATIC_EXEC@ +MAINT = @MAINT@ +MAKEINFO = @MAKEINFO@ +MKDIR_P = @MKDIR_P@ +MPE = @MPE@ +MPI_GET_SIZE = @MPI_GET_SIZE@ +OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@ +OBJEXT = @OBJEXT@ +PACKAGE = @PACKAGE@ +PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ +PACKAGE_NAME = @PACKAGE_NAME@ +PACKAGE_STRING = @PACKAGE_STRING@ +PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_VERSION = @PACKAGE_VERSION@ +PARALLEL = @PARALLEL@ +PATH_SEPARATOR = @PATH_SEPARATOR@ +PERL = @PERL@ +PTHREAD = @PTHREAD@ +RANLIB = @RANLIB@ +ROOT = @ROOT@ +RUNPARALLEL = @RUNPARALLEL@ +RUNSERIAL = @RUNSERIAL@ +R_INTEGER = @R_INTEGER@ +R_LARGE = @R_LARGE@ +SEARCH = @SEARCH@ +SETX = @SETX@ +SET_MAKE = @SET_MAKE@ + +# Hardcode SHELL to be /bin/sh. Most machines have this shell, and +# on at least one machine configure fails to detect its existence (janus). +# Also, when HDF5 is configured on one machine but run on another, +# configure's automatic SHELL detection may not work on the build machine. +SHELL = /bin/sh +SIZE_T = @SIZE_T@ +STATIC_SHARED = @STATIC_SHARED@ +STRIP = @STRIP@ +TESTPARALLEL = @TESTPARALLEL@ +TIME = @TIME@ +TR = @TR@ +TRACE_API = @TRACE_API@ +USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@ +USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@ +USE_FILTER_NBIT = @USE_FILTER_NBIT@ +USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@ +USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@ +USE_FILTER_SZIP = @USE_FILTER_SZIP@ +USINGMEMCHECKER = @USINGMEMCHECKER@ +VERSION = @VERSION@ +abs_builddir = @abs_builddir@ +abs_srcdir = @abs_srcdir@ +abs_top_builddir = @abs_top_builddir@ +abs_top_srcdir = @abs_top_srcdir@ +ac_ct_CC = @ac_ct_CC@ +ac_ct_CXX = @ac_ct_CXX@ +ac_ct_F77 = @ac_ct_F77@ +ac_ct_FC = @ac_ct_FC@ +am__include = @am__include@ +am__leading_dot = @am__leading_dot@ +am__quote = @am__quote@ +am__tar = @am__tar@ +am__untar = @am__untar@ +bindir = @bindir@ +build = @build@ +build_alias = @build_alias@ +build_cpu = @build_cpu@ +build_os = @build_os@ +build_vendor = @build_vendor@ +builddir = @builddir@ +datadir = @datadir@ +datarootdir = @datarootdir@ +docdir = $(exec_prefix)/doc +dvidir = @dvidir@ +exec_prefix = @exec_prefix@ +host = @host@ +host_alias = @host_alias@ +host_cpu = @host_cpu@ +host_os = @host_os@ +host_vendor = @host_vendor@ +htmldir = @htmldir@ + +# Install directories that automake doesn't know about +includedir = $(exec_prefix)/include +infodir = @infodir@ +install_sh = @install_sh@ +libdir = @libdir@ +libexecdir = @libexecdir@ +localedir = @localedir@ +localstatedir = @localstatedir@ +mandir = @mandir@ +mkdir_p = @mkdir_p@ +oldincludedir = @oldincludedir@ +pdfdir = @pdfdir@ +prefix = @prefix@ +program_transform_name = @program_transform_name@ +psdir = @psdir@ +sbindir = @sbindir@ +sharedstatedir = @sharedstatedir@ +srcdir = @srcdir@ +sysconfdir = @sysconfdir@ +target_alias = @target_alias@ +top_builddir = @top_builddir@ +top_srcdir = @top_srcdir@ + +# Shell commands used in Makefiles +RM = rm -f +CP = cp + +# Some machines need a command to run executables; this is that command +# so that our tests will run. +# We use RUNTESTS instead of RUNSERIAL directly because it may be that +# some tests need to be run with a different command. Older versions +# of the makefiles used the command +# $(LIBTOOL) --mode=execute +# in some directories, for instance. +RUNTESTS = $(RUNSERIAL) + +# Libraries to link to while building +LIBHDF5 = $(top_builddir)/src/libhdf5.la +LIBH5TEST = $(top_builddir)/test/libh5test.la +LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la +LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la +LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la +LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la +LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la +LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la +LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la + +# Scripts used to build examples +# If only shared libraries have been installed, have h5cc build examples with +# shared libraries instead of static libraries +H5CC = $(bindir)/h5cc +H5CC_PP = $(bindir)/h5pcc +H5FC = $(bindir)/h5fc +H5FC_PP = $(bindir)/h5pfc +H5CPP = $(bindir)/h5c++ + +# The trace script; this is used on source files from the C library to +# insert tracing macros. +TRACE = perl $(top_srcdir)/bin/trace + +# .chkexe files are used to mark tests that have run successfully. +# .chklog files are output from those tests. +# *.clog are from the MPE option. + +# Temporary files. *.h5 are generated by h5recover. +CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 + +# Include files in /src directory and /tools/lib directory +INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib + +# Test programs and scripts +TEST_PROG = trecover +TEST_SCRIPT = testh5recover.sh +check_SCRIPTS = $(TEST_SCRIPT) +SCRIPT_DEPEND = trecover$(EXEEXT) + +# Source files for the program +trecover_SOURCES = trecover_main.c trecover_writer.c trecover_crasher.c + +# All the programs depend on the hdf5 and h5tools libraries +LDADD = $(LIBH5TOOLS) $(LIBHDF5) +DISTCLEANFILES = testh5recover.sh + +# Automake needs to be taught how to build lib, progs, and tests targets. +# These will be filled in automatically for the most part (e.g., +# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and +# EXTRA_TEST variables are supplied to allow the user to force targets to +# be built at certain times. +LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ + $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) + +PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ + $(EXTRA_PROG) + +TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) +TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) +TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) +TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_) +all: all-am + +.SUFFIXES: +.SUFFIXES: .c .lo .o .obj +$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__configure_deps) + @for dep in $?; do \ + case '$(am__configure_deps)' in \ + *$$dep*) \ + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \ + && exit 0; \ + exit 1;; \ + esac; \ + done; \ + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5recover/Makefile'; \ + cd $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5recover/Makefile +.PRECIOUS: Makefile +Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ + *config.status*) \ + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \ + *) \ + echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ + esac; + +$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh + +$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +testh5recover.sh: $(top_builddir)/config.status $(srcdir)/testh5recover.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ +install-binPROGRAMS: $(bin_PROGRAMS) + @$(NORMAL_INSTALL) + test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" + @list='$(bin_PROGRAMS)'; for p in $$list; do \ + p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ + if test -f $$p \ + || test -f $$p1 \ + ; then \ + f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ + else :; fi; \ + done + +uninstall-binPROGRAMS: + @$(NORMAL_UNINSTALL) + @list='$(bin_PROGRAMS)'; for p in $$list; do \ + f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ + echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ + rm -f "$(DESTDIR)$(bindir)/$$f"; \ + done + +clean-binPROGRAMS: + @list='$(bin_PROGRAMS)'; for p in $$list; do \ + f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f $$p $$f"; \ + rm -f $$p $$f ; \ + done + +clean-checkPROGRAMS: + @list='$(check_PROGRAMS)'; for p in $$list; do \ + f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f $$p $$f"; 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E.g.,"; \ + echo " HDF5_PARAPREFIX=/PFS/user/me"; \ + echo " export HDF5_PARAPREFIX"; \ + echo " make check"; \ + echo "**** end of Hint ****"; \ + fi + @for test in $(TEST_PROG_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \ + RUNTESTS="$(RUNPARALLEL)" || exit 1; \ + fi; \ + done + @for test in $(TEST_SCRIPT_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \ + fi; \ + done + @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ + echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ + fi + +# Run test with different Virtual File Driver +check-vfd: $(LIB) $(PROGS) $(TESTS) + @for vfd in $(VFD_LIST) dummy; do \ + if test $$vfd != dummy; then \ + echo "============================"; \ + echo "Testing Virtual File Driver $$vfd"; \ + echo "============================"; \ + $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \ + HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ + fi; \ + done +# Tell versions [3.59,3.63) of GNU make to not export all variables. +# Otherwise a system limit (for SysV at least) may be exceeded. +.NOEXPORT: diff --git a/tools/h5recover/testh5recover.sh.in b/tools/h5recover/testh5recover.sh.in new file mode 100644 index 0000000..27cf1d1 --- /dev/null +++ b/tools/h5recover/testh5recover.sh.in @@ -0,0 +1,124 @@ +#! /bin/sh +# +# Copyright by The HDF Group. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from help@hdfgroup.org. +# +# Tests for the h5recover tool + +# Determine which filters are available +USE_FILTER_SZIP="@USE_FILTER_SZIP@" +USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" +USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@" +USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@" +USE_FILTER_NBIT="@USE_FILTER_NBIT@" +USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@" + +TOOL=h5recover # The tool name +TOOL_BIN=`pwd`/$TOOL # The path of the tool binary +TESTDIR=`pwd`/../testfiles + + +CMP='cmp -s' +DIFF='diff -c' + +nerrors=0 +verbose=yes + +# The build (current) directory might be different than the source directory. +if test -z "$srcdir"; then + srcdir=. +fi + +#test -d $TESTDIR || mkdir $TESTDIR + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Testing". +# +TESTING() { + SPACES=" " + echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012' +} + +# Run a test and print PASS or *FAIL*. If a test fails then increment +# the `nerrors' global variable and (if $verbose is set) display the +# difference between the actual output and the expected output. The +# expected output is given as the first argument to this function and +# the actual output file is calculated by replacing the `.ddl' with +# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a +# non-zero value. +# +TOOLTEST() { + + expect="$srcdir/../testfiles/$1" + actual="../testfiles/`basename $1 .ddl`.out" + actual_err="../testfiles/`basename $1 .ddl`.err" + shift + + # Run test. + TESTING $TOOL $@ + ( + echo "#############################" + echo "Expected output for '$TOOL $@'" + echo "#############################" + cd $srcdir/../testfiles + $RUNSERIAL $TOOL_BIN $@ + ) >$actual 2>$actual_err + cat $actual_err >> $actual + + if [ ! -f $expect ]; then + # Create the expect file if it doesn't yet exist. + echo " CREATED" + cp $actual $expect + elif $CMP $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.ddl) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual $actual_err + fi + +} + + + +# Print a "SKIP" message +SKIP() { + TESTING $TOOL $@ + echo " -SKIP-" +} + + + +############################################################################## +############################################################################## +### T H E T E S T S ### +############################################################################## +############################################################################## + +SKIP dummy testh5recover + +# test for displaying groups +#TOOLTEST tgroup-1.ddl tgroup.h5 + + +if test $nerrors -eq 0 ; then + echo "All $TOOL tests passed." +fi + +exit $nerrors + diff --git a/tools/h5recover/trecover.h b/tools/h5recover/trecover.h new file mode 100644 index 0000000..79635dc --- /dev/null +++ b/tools/h5recover/trecover.h @@ -0,0 +1,30 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include "hdf5.h" + +/* + * Header file for the trecover test program. + */ + +/* Macro definitions */ +/* Crash modes */ +#define SyncCrash 0 +#define AsyncCrash 1 +#define CRASH crasher(SyncCrash, 0) + + +/* protocol definitions */ +void crasher(int crash_mode, int crash_param); +void writer(void); diff --git a/tools/h5recover/trecover_crasher.c b/tools/h5recover/trecover_crasher.c new file mode 100644 index 0000000..dd79331 --- /dev/null +++ b/tools/h5recover/trecover_crasher.c @@ -0,0 +1,42 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * crasher HDF5 API module of the trecover test program. + */ + +#include "trecover.h" + +/* Crasher + * Two crash modes: + * SyncCrash: will now at once; + * AsyncCrash: schedule a crash to occur in the future in the asynchronous + * fashion. + * Crash_param: used by AsyncCrash mode and ignored by SyncCrash mode. + */ +void +crasher(int crash_mode, int crash_param) +{ + switch (crash_mode) { + case SyncCrash: + _exit(0); + break; + case AsyncCrash: + printf("AsyncCrash not implemented yet\n"); + break; + otherwise: + print("Unknown Crash Mode (%d)\n", crash_mode); + break; + } +} diff --git a/tools/h5recover/trecover_main.c b/tools/h5recover/trecover_main.c new file mode 100644 index 0000000..bb19159 --- /dev/null +++ b/tools/h5recover/trecover_main.c @@ -0,0 +1,28 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * This example writes data to the HDF5 file. + * It creates three datasets, first one as a regular dataset, second one + * uses gzip compression if supported, and the third one use szip compression + * if supported. + */ + +#include "trecover.h" + +int +main (void) +{ + writer(); +} diff --git a/tools/h5recover/trecover_writer.c b/tools/h5recover/trecover_writer.c new file mode 100644 index 0000000..d7b3bb2 --- /dev/null +++ b/tools/h5recover/trecover_writer.c @@ -0,0 +1,157 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * writer HDF5 API module of the trecover test program. + */ + +#include "trecover.h" + +#define H5FILE_NAME "SDS.h5" +#define DATASETNAME "IntArray" +#define ZDATASETNAME "IntArrayZCompressed" +#define SZDATASETNAME "IntArraySZCompressed" +/* Dataset dimensions. Intentional small for easier dumping of data. */ +#define RANK 2 +#define NX 8000 /* dataset dimensions */ +#define NY 16 +#define ChunkX 8 /* Dataset chunk sizes */ +#define ChunkY 8 + +void +writer(void) +{ + hid_t file, dataset; /* file and dataset handles */ + hid_t datatype, dataspace, plist; /* handles */ + hsize_t dims[RANK]={NX,NY}; /* dataset dimensions */ + hsize_t dimschunk[RANK]={ChunkX,ChunkY}; /* dataset chunk dimensions */ + herr_t status; + int data[NX][NY]; /* data to write */ + int i, j; + + /* + * Data and output buffer initialization. + */ + for (i = 0; i < NX; i++) { + for (j = 0; j < NY; j++) + data[i][j] = i*100 + j; + } + + /* + * Create a new file using H5F_ACC_TRUNC access, + * default file creation properties, and default file + * access properties. + */ + file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /* + * Describe the size of the array and create the data space for fixed + * size dataset. + */ + dataspace = H5Screate_simple(RANK, dims, NULL); + + /* + * Define datatype for the data in the file. + * We will store little endian INT numbers. + */ + datatype = H5Tcopy(H5T_NATIVE_INT); + status = H5Tset_order(datatype, H5T_ORDER_LE); + + /* ============================================================= + * Create a new dataset within the file using defined dataspace and + * datatype and default dataset creation properties. + * ============================================================= + */ + dataset = H5Dcreate(file, DATASETNAME, datatype, dataspace, + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + /* + * Write the data to the dataset using default transfer properties. + */ + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, + H5P_DEFAULT, data); + CRASH; + /* + * Close/release resources. + */ + H5Dclose(dataset); + printf("%s created.\n", DATASETNAME); + +#ifdef H5_HAVE_FILTER_DEFLATE + /* ============================================================= + * Create similar dataset but using Zlib compression. + * Dataset creation property list is modified to use + * GZIP compression with the compression effort set to 6. + * Note that compression can be used only when dataset is chunked. + * ============================================================= + */ + plist = H5Pcreate(H5P_DATASET_CREATE); + H5Pset_chunk(plist, RANK, dimschunk); + H5Pset_deflate( plist, 6); + dataset = H5Dcreate(file, ZDATASETNAME, H5T_NATIVE_INT, + dataspace, plist, H5P_DEFAULT, H5P_DEFAULT); + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, + H5P_DEFAULT, data); + + /* + * Close/release resources. + */ + H5Pclose(plist); + H5Dclose(dataset); + printf("%s created.\n", ZDATASETNAME); +#else + printf("%s is not created because of no GZIP (deflate) support.\n", + ZDATASETNAME); +#endif + +#ifdef H5_HAVE_FILTER_SZIP + /* ============================================================= + * Create similar dataset but using SZLIB compression. + * Dataset creation property list is modified to use + * SZIP compression with 8 pixels_per_block. + * Note that compression can be used only when dataset is chunked. + * ============================================================= + */ + plist = H5Pcreate(H5P_DATASET_CREATE); + H5Pset_chunk(plist, RANK, dimschunk); + H5Pset_szip (plist, H5_SZIP_NN_OPTION_MASK, 8); + dataset = H5Dcreate(file, SZDATASETNAME, H5T_NATIVE_INT, + dataspace, plist, H5P_DEFAULT, H5P_DEFAULT); + status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, + H5P_DEFAULT, data); + + /* + * Close/release resources. + */ + H5Pclose(plist); + H5Dclose(dataset); + printf("%s created.\n", SZDATASETNAME); +#else + printf("%s is not created because of no SZIP encode support.\n", + SZDATASETNAME); +#endif + + /* + * Close/release resources. + */ + H5Sclose(dataspace); + H5Tclose(datatype); + + /* Close the file */ + H5Fclose(file); + + printf("HDF5 C Sample program ran successfully. File %s generated.\n", H5FILE_NAME); + + return; +} |