Split tools into src and test - remove folders

1 files changed, 0 insertions, 243 deletions

diff --git a/tools/h5repack/h5repack.h b/tools/h5repack/h5repack.h
deleted file mode 100644
index d2ab923..0000000
--- a/tools/h5repack/h5repack.h
+++ /dev/null
@@ -1,243 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group.                                               *
- * Copyright by the Board of Trustees of the University of Illinois.         *
- * All rights reserved.                                                      *
- *                                                                           *
- * This file is part of HDF5.  The full HDF5 copyright notice, including     *
- * terms governing use, modification, and redistribution, is contained in    *
- * the files COPYING and Copyright.html.  COPYING can be found at the root   *
- * of the source code distribution tree; Copyright.html can be found at the  *
- * root level of an installed copy of the electronic HDF5 document set and   *
- * is linked from the top-level documents page.  It can also be found at     *
- * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
- * access to either file, you may request a copy from help@hdfgroup.org.     *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-
-#ifndef H5REPACK_H__
-#define H5REPACK_H__
-
-#include "H5private.h"
-#include "hdf5.h"
-#include "h5trav.h"
-
-#define H5FOPENERROR "unable to open file"
-#define PFORMAT  "%-7s %-7s %-7s\n"   /* chunk info, compression info, name*/
-#define PFORMAT1 "%-7s %-7s %-7s"     /* chunk info, compression info, name*/
-#define MAX_NC_NAME 256               /* max length of a name */
-#define MAX_VAR_DIMS 32               /* max per variable dimensions */
-#define FORMAT_OBJ      " %-27s %s\n"   /* obj type, name */
-#define FORMAT_OBJ_ATTR "  %-27s %s\n"  /* obj type, name */
-#define MAX_COMPACT_DSIZE  64512  /* max data size for compact layout. -1k for header size */
-
-/*-------------------------------------------------------------------------
- * data structures for command line options
- *-------------------------------------------------------------------------
- */
-
-/* a list of names */
-typedef struct {
- char obj[MAX_NC_NAME];
-} obj_list_t;
-
-/*
- the type of filter and additional parameter
- type can be one of the filters
- H5Z_FILTER_NONE        0,  uncompress if compressed
- H5Z_FILTER_DEFLATE     1 , deflation like gzip
- H5Z_FILTER_SHUFFLE     2 , shuffle the data
- H5Z_FILTER_FLETCHER32  3 , letcher32 checksum of EDC
- H5Z_FILTER_SZIP        4 , szip compression
- H5Z_FILTER_NBIT        5 , nbit compression
- H5Z_FILTER_SCALEOFFSET 6 , scaleoffset compression
-*/
-
-#define CD_VALUES 20
-
-typedef struct {
- H5Z_filter_t filtn;                           /* filter identification number */
- unsigned     cd_values[CD_VALUES];            /* filter client data values */
- size_t       cd_nelmts;                       /* filter client number of values */
-} filter_info_t;
-
-/* chunk lengths along each dimension and rank */
-typedef struct {
- hsize_t chunk_lengths[MAX_VAR_DIMS];
- int     rank;
-} chunk_info_t;
-
-/* we currently define a maximum value for the filters array,
-   that corresponds to the current library filters */
-#define H5_REPACK_MAX_NFILTERS 6
-
-/* information for one object, contains PATH, CHUNK info and FILTER info */
-typedef struct {
- char          path[MAX_NC_NAME];               /* name of object */
- filter_info_t filter[H5_REPACK_MAX_NFILTERS];  /* filter array */
- int           nfilters;                        /* current number of filters */
- H5D_layout_t  layout;                          /* layout information */
- chunk_info_t  chunk;                           /* chunk information */
- hid_t         refobj_id;                       /* object ID, references */
-} pack_info_t;
-
-/* store a table of all objects */
-typedef struct {
-    unsigned int size;
-    unsigned int nelems;
-    pack_info_t  *objs;
-} pack_opttbl_t;
-
-
-/*-------------------------------------------------------------------------
- * command line options
- *-------------------------------------------------------------------------
- */
-
-/* all the above, ready to go to the hrepack call */
-typedef struct {
- pack_opttbl_t   *op_tbl;     /*table with all -c and -f options */
- int             all_layout;  /*apply the layout to all objects */
- int             all_filter;  /*apply the filter to all objects */
- filter_info_t   filter_g[H5_REPACK_MAX_NFILTERS];    /*global filter array for the ALL case */
- int             n_filter_g;  /*number of global filters */
- chunk_info_t    chunk_g;     /*global chunk INFO for the ALL case */
- H5D_layout_t    layout_g;    /*global layout information for the ALL case */
- int             verbose;     /*verbose mode */
- hsize_t         min_comp;    /*minimum size to compress, in bytes */
- int             use_native;  /*use a native type in write */
- hbool_t         latest;      /*pack file with the latest file format */
- int             grp_compact; /* Set the maximum number of links to store as header messages in the group */
- int             grp_indexed; /* Set the minimum number of links to store in the indexed format */
- int             msg_size[8]; /* Minimum size of shared messages: dataspace,
-                                 datatype, fill value, filter pipleline, attribute */
- const char      *ublock_filename; /* user block file name */
- hsize_t         ublock_size;      /* user block size */
- hsize_t         meta_block_size;  /* metadata aggregation block size (for H5Pset_meta_block_size) */
- hsize_t         threshold;        /* alignment threshold for H5Pset_alignment */
- hsize_t         alignment;        /* alignment for H5Pset_alignment */
- H5F_file_space_type_t fs_strategy;     /* File space handling strategy */
- hsize_t         fs_threshold;      	/* Free space section threshold */
-} pack_opt_t;
-
-
-typedef struct named_dt_t {
-    haddr_t             addr_in;    /* Address of the named dtype in the in file */
-    hid_t               id_out;     /* Open identifier for the dtype in the out file */
-    struct named_dt_t   *next;      /* Next dtype */
-} named_dt_t;
-
-/*-------------------------------------------------------------------------
- * public functions
- *-------------------------------------------------------------------------
- */
-
-#ifdef __cplusplus
-extern "C" {
-#endif
-
-int h5repack(const char* infile, const char* outfile, pack_opt_t *options);
-int h5repack_addfilter(const char* str, pack_opt_t *options);
-int h5repack_addlayout(const char* str, pack_opt_t *options);
-int h5repack_init(pack_opt_t *options, int verbose, hbool_t latest,
-    H5F_file_space_type_t strategy, hsize_t threshold);
-int h5repack_end(pack_opt_t *options);
-int h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options);
-int h5repack_cmp_pl(const char *fname1, const char *fname2);
-
-/* Note: The below copy_named_datatype(), named_datatype_free(), copy_attr() 
- * and struct named_dt_t were located in h5repack_copy.c as static prior to 
- * bugfix1726. 
- * Made shared functions as copy_attr() was needed in h5repack_refs.c. 
- * However copy_attr() may be obsoleted when H5Acopy is available and put back
- * others to static in h5repack_copy.c.
- */
-hid_t copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, trav_table_t *travt, pack_opt_t *options);
-int named_datatype_free(named_dt_t **named_dt_head_p, int ignore_err);
-int copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p,
-              trav_table_t *travt, pack_opt_t *options);
-
-#ifdef __cplusplus
-}
-#endif
-
-
-
-/*-------------------------------------------------------------------------
- * private functions
- *-------------------------------------------------------------------------
- */
-
-
-/*-------------------------------------------------------------------------
- * copy module
- *-------------------------------------------------------------------------
- */
-
-int copy_objects   (const char* fnamein,
-                    const char* fnameout,
-                    pack_opt_t *options);
-
-int do_copy_refobjs(hid_t fidin,
-                    hid_t fidout,
-                    trav_table_t *travt,
-                    pack_opt_t *options);
-
-/*-------------------------------------------------------------------------
- * filters and verify module
- *-------------------------------------------------------------------------
- */
-void init_packobject(pack_info_t *obj);
-
-
-/*-------------------------------------------------------------------------
- * filters and copy module
- *-------------------------------------------------------------------------
- */
-
-int apply_filters(const char* name,    /* object name from traverse list */
-                  int rank,            /* rank of dataset */
-                  hsize_t *dims,       /* dimensions of dataset */
-                  size_t msize,        /* size of type */
-                  hid_t dcpl_id,       /* dataset creation property list */
-                  pack_opt_t *options, /* repack options */
-                  int *has_filter);    /* (OUT) object NAME has a filter */
-
-
-/*-------------------------------------------------------------------------
- * options table
- *-------------------------------------------------------------------------
- */
-int          options_table_init( pack_opttbl_t **tbl );
-int          options_table_free( pack_opttbl_t *table );
-int          options_add_layout( obj_list_t *obj_list,
-                                 unsigned n_objs,
-                                 pack_info_t *pack,
-                                 pack_opttbl_t *table );
-int          options_add_filter ( obj_list_t *obj_list,
-                                 unsigned n_objs,
-                                 filter_info_t filt,
-                                 pack_opttbl_t *table );
-pack_info_t* options_get_object( const char *path,
-                                 pack_opttbl_t *table);
-
-/*-------------------------------------------------------------------------
- * parse functions
- *-------------------------------------------------------------------------
- */
-
-obj_list_t* parse_filter(const char *str,
-                         unsigned *n_objs,
-                         filter_info_t *filt,
-                         pack_opt_t *options,
-                         int *is_glb);
-
-obj_list_t* parse_layout(const char *str,
-                         unsigned *n_objs,
-                         pack_info_t *pack,    /* info about object */
-                         pack_opt_t *options);
-
-
-
-
-#endif  /* H5REPACK_H__ */
-