Split tools into src and test - remove folders

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-usage: h5repack [OPTIONS] file1 file2
-  file1                    Input HDF5 File
-  file2                    Output HDF5 File
-  OPTIONS
-   -h, --help              Print a usage message and exit
-   -v, --verbose           Verbose mode, print object information
-   -V, --version           Print version number and exit
-   -n, --native            Use a native HDF5 type when repacking
-   -L, --latest            Use latest version of file format
-   -c L1, --compact=L1     Maximum number of links in header messages
-   -d L2, --indexed=L2     Minimum number of links in the indexed format
-   -s S[:F], --ssize=S[:F] Shared object header message minimum size
-   -m M, --minimum=M       Do not apply the filter to datasets smaller than M
-   -e E, --file=E          Name of file E with the -f and -l options
-   -u U, --ublock=U        Name of file U with user block data to be added
-   -b B, --block=B         Size of user block to be added
-   -M A, --metadata_block_size=A  Metadata block size for H5Pset_meta_block_size
-   -t T, --threshold=T     Threshold value for H5Pset_alignment
-   -a A, --alignment=A     Alignment value for H5Pset_alignment
-   -f FILT, --filter=FILT  Filter type
-   -l LAYT, --layout=LAYT  Layout type
-   -S FS_STRGY, --fs_strategy=FS_STRGY  File space management strategy
-   -T FS_THRD, --fs_threshold=FS_THRD   Free-space section threshold
-
-    M - is an integer greater than 1, size of dataset in bytes (default is 0) 
-    E - is a filename.
-    S - is an integer
-    U - is a filename.
-    T - is an integer
-    A - is an integer greater than zero
-    B - is the user block size, any value that is 512 or greater and is
-        a power of 2 (1024 default)
-    F - is the shared object header message type, any of <dspace|dtype|fill|
-        pline|attr>. If F is not specified, S applies to all messages
-
-     --enable-error-stack Prints messages from the HDF5 error stack as they
-                          occur.
-
-    FS_STRGY is the file space management strategy to use for the output file.
-             It is a string as listed below:
-        ALL_PERSIST - Use persistent free-space managers, aggregators and virtual file driver
-                      for file space allocation
-        ALL - Use non-persistent free-space managers, aggregators and virtual file driver
-              for file space allocation
-        AGGR_VFD - Use aggregators and virtual file driver for file space allocation
-        VFD - Use virtual file driver for file space allocation
-
-    FS_THRD is the free-space section threshold to use for the output file.
-            It is the minimum size (in bytes) of free-space sections to be tracked
-            by the the library's free-space managers.
-
-    FILT - is a string with the format:
-
-      <list of objects>:<name of filter>=<filter parameters>
-
-      <list of objects> is a comma separated list of object names, meaning apply
-        compression only to those objects. If no names are specified, the filter
-        is applied to all objects
-      <name of filter> can be:
-        GZIP, to apply the HDF5 GZIP filter (GZIP compression)
-        SZIP, to apply the HDF5 SZIP filter (SZIP compression)
-        SHUF, to apply the HDF5 shuffle filter
-        FLET, to apply the HDF5 checksum filter
-        NBIT, to apply the HDF5 NBIT filter (NBIT compression)
-        SOFF, to apply the HDF5 Scale/Offset filter
-        UD,   to apply a user defined filter
-        NONE, to remove all filters
-      <filter parameters> is optional filter parameter information
-        GZIP=<deflation level> from 1-9
-        SZIP=<pixels per block,coding> pixels per block is a even number in
-            2-32 and coding method is either EC or NN
-        SHUF (no parameter)
-        FLET (no parameter)
-        NBIT (no parameter)
-        SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type
-            is either IN or DS
-        UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]>
-            required values for filter_number,cd_value_count,value_1
-            optional values for value_2 to value_N
-        NONE (no parameter)
-
-    LAYT - is a string with the format:
-
-      <list of objects>:<layout type>=<layout parameters>
-
-      <list of objects> is a comma separated list of object names, meaning that
-        layout information is supplied for those objects. If no names are
-        specified, the layout type is applied to all objects
-      <layout type> can be:
-        CHUNK, to apply chunking layout
-        COMPA, to apply compact layout
-        CONTI, to apply contiguous layout
-      <layout parameters> is optional layout information
-        CHUNK=DIM[xDIM...xDIM], the chunk size of each dimension
-        COMPA (no parameter)
-        CONTI (no parameter)
-
-Examples of use:
-
-1) h5repack -v -f GZIP=1 file1 file2
-
-   GZIP compression with level 1 to all objects
-
-2) h5repack -v -f dset1:SZIP=8,NN file1 file2
-
-   SZIP compression with 8 pixels per block and NN coding method to object dset1
-
-3) h5repack -v -l dset1,dset2:CHUNK=20x10 -f dset3,dset4,dset5:NONE file1 file2
-
-   Chunked layout, with a layout size of 20x10, to objects dset1 and dset2
-   and remove filters to objects dset3, dset4, dset5
-
-4) h5repack -L -c 10 -s 20:dtype file1 file2 
-
-   Using latest file format with maximum compact group size of 10 and
-   and minimum shared datatype size of 20
-
-5) h5repack -f SHUF -f GZIP=1 file1 file2 
-
-   Add both filters SHUF and GZIP in this order to all datasets
-
-6) h5repack -f UD=307,1,9 file1 file2 
-
-   Add bzip2 filter to all datasets
-