diff options
| author | Pedro Vicente Nunes <pvn@hdfgroup.org> | 2006-11-15 19:56:44 (GMT) |
|---|---|---|
| committer | Pedro Vicente Nunes <pvn@hdfgroup.org> | 2006-11-15 19:56:44 (GMT) |
| commit | 8f74e81758f53e46a2898616c1c438c99aaac15b (patch) | |
| tree | 3a1a524e78357f06cd8abf481b3334b6a6bae605 /tools/h5repack | |
| parent | a44ab9133a917152680938707d893888d6a97c02 (diff) | |
| download | hdf5-8f74e81758f53e46a2898616c1c438c99aaac15b.zip hdf5-8f74e81758f53e46a2898616c1c438c99aaac15b.tar.gz hdf5-8f74e81758f53e46a2898616c1c438c99aaac15b.tar.bz2 | |
[svn-r12917]
h5repack revision:
1. added a new test due to the introduction of H5Ocopy in the copy of objects (compressed dataset with references, that still must go a second sweep of the file to be regenerated).
2. Moved all the source files from the h5repack test program to a new file h5repacktst.c and removed the old ones (testh5repack*.c).
3. Renamed the binary files from test*.h5 to h5repack*.h5 for easy reference.
4. Modified the shell script to use variables for file names instead of hard coded names
Diffstat (limited to 'tools/h5repack')
| -rw-r--r-- | tools/h5repack/Makefile.am | 3 | ||||
| -rw-r--r-- | tools/h5repack/Makefile.in | 14 | ||||
| -rwxr-xr-x | tools/h5repack/h5repack.sh.in | 123 | ||||
| -rw-r--r-- | tools/h5repack/h5repack_copy.c | 34 | ||||
| -rw-r--r-- | tools/h5repack/h5repacktst.c | 4477 | ||||
| -rw-r--r-- | tools/h5repack/testh5repack.h | 99 | ||||
| -rw-r--r-- | tools/h5repack/testh5repack_attr.c | 1033 | ||||
| -rw-r--r-- | tools/h5repack/testh5repack_detect_szip.c | 1 | ||||
| -rw-r--r-- | tools/h5repack/testh5repack_dset.c | 698 | ||||
| -rw-r--r-- | tools/h5repack/testh5repack_main.c | 1221 | ||||
| -rw-r--r-- | tools/h5repack/testh5repack_make.c | 1390 | ||||
| -rw-r--r-- | tools/h5repack/testh5repack_util.c | 154 |
12 files changed, 4570 insertions, 4677 deletions
diff --git a/tools/h5repack/Makefile.am b/tools/h5repack/Makefile.am index 8a664ef..d462705 100644 --- a/tools/h5repack/Makefile.am +++ b/tools/h5repack/Makefile.am @@ -45,8 +45,7 @@ COMMON_SOURCES=h5repack.c h5repack_copy.c h5repack_filters.c \ h5repack_SOURCES=$(COMMON_SOURCES) h5repack_main.c -h5repacktst_SOURCES=$(COMMON_SOURCES) testh5repack_attr.c testh5repack_dset.c \ - testh5repack_main.c testh5repack_make.c testh5repack_util.c +h5repacktst_SOURCES=$(COMMON_SOURCES) h5repacktst.c testh5repack_detect_szip_SOURCES=testh5repack_detect_szip.c diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index ae39a84..1bb0e54 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -84,9 +84,7 @@ am__DEPENDENCIES_2 = $(top_builddir)/test/libh5test.la am__DEPENDENCIES_3 = $(top_builddir)/src/libhdf5.la h5repack_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2) \ $(am__DEPENDENCIES_3) -am_h5repacktst_OBJECTS = $(am__objects_1) testh5repack_attr.$(OBJEXT) \ - testh5repack_dset.$(OBJEXT) testh5repack_main.$(OBJEXT) \ - testh5repack_make.$(OBJEXT) testh5repack_util.$(OBJEXT) +am_h5repacktst_OBJECTS = $(am__objects_1) h5repacktst.$(OBJEXT) h5repacktst_OBJECTS = $(am_h5repacktst_OBJECTS) h5repacktst_LDADD = $(LDADD) h5repacktst_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2) \ @@ -374,9 +372,7 @@ COMMON_SOURCES = h5repack.c h5repack_copy.c h5repack_filters.c \ h5repack_verify.c h5repack_SOURCES = $(COMMON_SOURCES) h5repack_main.c -h5repacktst_SOURCES = $(COMMON_SOURCES) testh5repack_attr.c testh5repack_dset.c \ - testh5repack_main.c testh5repack_make.c testh5repack_util.c - +h5repacktst_SOURCES = $(COMMON_SOURCES) h5repacktst.c testh5repack_detect_szip_SOURCES = testh5repack_detect_szip.c DISTCLEANFILES = h5repack.sh @@ -497,12 +493,8 @@ distclean-compile: @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_opttable.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_parse.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_verify.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_attr.Po@am__quote@ +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repacktst.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_detect_szip.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_dset.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_main.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_make.Po@am__quote@ -@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/testh5repack_util.Po@am__quote@ .c.o: @am__fastdepCC_TRUE@ if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \ diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in index ca0fa2e..a29fc80 100755 --- a/tools/h5repack/h5repack.sh.in +++ b/tools/h5repack/h5repack.sh.in @@ -13,6 +13,11 @@ # access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. # # Tests for the h5repack tool +# +# Modification: +# Pedro Vicente Nunes, 11/15/2006 +# Added $FILEN variables for file names +# USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -33,6 +38,21 @@ H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP # The path of the tool binary INFO_FILE=../testfiles/info.h5repack +FILE0=h5repack_fill.h5 +FILE1=h5repack_objs.h5 +FILE2=h5repack_attr.h5 +FILE3=h5repack_hlink.h5 +FILE4=h5repack_layout.h5 +FILE5=h5repack_early.h5 +FILE7=h5repack_szip.h5 +FILE8=h5repack_deflate.h5 +FILE9=h5repack_shuffle.h5 +FILE10=h5repack_fletcher.h5 +FILE11=h5repack_filters.h5 +FILE12=h5repack_nbit.h5 +FILE13=h5repack_soffset.h5 + + nerrors=0 verbose=yes @@ -137,17 +157,18 @@ USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN` fi # copy files (these files have no filters) -TOOLTEST test0.h5 -TOOLTEST test1.h5 -TOOLTEST test2.h5 -TOOLTEST test3.h5 -TOOLTEST test4.h5 -TOOLTEST test5.h5 +TOOLTEST $FILE0 +TOOLTEST $FILE1 +TOOLTEST $FILE2 +TOOLTEST $FILE3 +TOOLTEST $FILE4 +TOOLTEST $FILE5 + -# use test4.h5 to write some filters (this file has no filters) +# use $FILE4 to write some filters (this file has no filters) # gzip with individual object -arg="test4.h5 -f dset1:GZIP=1 -l dset1:CHUNK=20x10" +arg="$FILE4 -f dset1:GZIP=1 -l dset1:CHUNK=20x10" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else @@ -155,7 +176,7 @@ else fi # gzip for all -arg="test4.h5 -f GZIP=1" +arg="$FILE4 -f GZIP=1" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else @@ -163,7 +184,7 @@ else fi # szip with individual object -arg="test4.h5 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10" +arg="$FILE4 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else @@ -171,7 +192,7 @@ else fi # szip for all -arg="test4.h5 -f SZIP=8,NN" +arg="$FILE4 -f SZIP=8,NN" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else @@ -179,7 +200,7 @@ else fi # shuffle with individual object -arg="test4.h5 -f dset2:SHUF -l dset2:CHUNK=20x10" +arg="$FILE4 -f dset2:SHUF -l dset2:CHUNK=20x10" if test $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else @@ -188,7 +209,7 @@ fi # shuffle for all -arg="test4.h5 -f SHUF" +arg="$FILE4 -f SHUF" if test $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else @@ -196,7 +217,7 @@ else fi # fletcher32 with individual object -arg="test4.h5 -f dset2:FLET -l dset2:CHUNK=20x10" +arg="$FILE4 -f dset2:FLET -l dset2:CHUNK=20x10" if test $USE_FILTER_FLETCHER32 != "yes" ; then SKIP $arg else @@ -204,7 +225,7 @@ else fi # fletcher32 for all -arg="test4.h5 -f FLET" +arg="$FILE4 -f FLET" if test $USE_FILTER_FLETCHER32 != "yes" ; then SKIP $arg else @@ -212,7 +233,7 @@ else fi # all filters -arg="test4.h5 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10" +arg="$FILE4 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else @@ -224,7 +245,7 @@ fi ########################################################### # szip copy -arg="test_szip.h5" +arg="$FILE7" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else @@ -232,7 +253,7 @@ else fi # szip remove -arg="test_szip.h5 -f dset_szip:NONE" +arg="$FILE7 -f dset_szip:NONE" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else @@ -240,7 +261,7 @@ else fi # deflate copy -arg="test_deflate.h5" +arg="$FILE8" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else @@ -248,7 +269,7 @@ else fi # deflate remove -arg="test_deflate.h5 -f dset_deflate:NONE" +arg="$FILE8 -f dset_deflate:NONE" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else @@ -256,7 +277,7 @@ else fi # shuffle copy -arg="test_shuffle.h5" +arg="$FILE9" if test $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else @@ -264,7 +285,7 @@ else fi # shuffle remove -arg="test_shuffle.h5 -f dset_shuffle:NONE" +arg="$FILE9 -f dset_shuffle:NONE" if test $USE_FILTER_SHUFFLE != "yes" ; then SKIP $arg else @@ -272,7 +293,7 @@ else fi # fletcher32 copy -arg="test_fletcher32.h5" +arg="$FILE10" if test $USE_FILTER_FLETCHER32 != "yes" ; then SKIP $arg else @@ -280,7 +301,7 @@ else fi # fletcher32 remove -arg="test_fletcher32.h5 -f dset_fletcher32:NONE" +arg="$FILE10 -f dset_fletcher32:NONE" if test $USE_FILTER_FLETCHER32 != "yes" ; then SKIP $arg else @@ -288,7 +309,7 @@ else fi # nbit copy -arg="test_nbit.h5" +arg="$FILE12" if test $USE_FILTER_NBIT != "yes" ; then SKIP $arg else @@ -296,7 +317,7 @@ else fi # nbit remove -arg="test_nbit.h5 -f dset_nbit:NONE" +arg="$FILE12 -f dset_nbit:NONE" if test $USE_FILTER_NBIT != "yes" ; then SKIP $arg else @@ -304,7 +325,7 @@ else fi # nbit add -arg="test_nbit.h5 -f dset_int31:NBIT" +arg="$FILE12 -f dset_int31:NBIT" if test $USE_FILTER_NBIT != "yes" ; then SKIP $arg else @@ -312,7 +333,7 @@ else fi # scaleoffset copy -arg="test_scaleoffset.h5" +arg="$FILE13" if test $USE_FILTER_SCALEOFFSET != "yes" ; then SKIP $arg else @@ -320,7 +341,7 @@ else fi # scaleoffset add -arg="test_scaleoffset.h5 -f dset_none:SOFF=31,IN" +arg="$FILE13 -f dset_none:SOFF=31,IN" if test $USE_FILTER_SCALEOFFSET != "yes" ; then SKIP $arg else @@ -328,7 +349,7 @@ else fi # scaleoffset remove -arg="test_scaleoffset.h5 -f dset_scaleoffset:NONE" +arg="$FILE13 -f dset_scaleoffset:NONE" if test $USE_FILTER_SCALEOFFSET != "yes" ; then SKIP $arg else @@ -336,7 +357,7 @@ else fi # remove all filters -arg="test_all.h5 -f NONE" +arg="$FILE11 -f NONE" if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_NBIT != "yes" -o $USE_FILTER_SCALEOFFSET != "yes" ; then SKIP $arg else @@ -345,14 +366,14 @@ fi #filter conversions -arg="test_deflate.h5 -f dset_deflate:SZIP=8,NN" +arg="$FILE8 -f dset_deflate:SZIP=8,NN" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else TOOLTEST $arg fi -arg="test_szip.h5 -f dset_szip:GZIP=1" +arg="$FILE7 -f dset_szip:GZIP=1" if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else @@ -361,7 +382,7 @@ fi #limit -arg="test4.h5 -f GZIP=1 -m 1024" +arg="$FILE4 -f GZIP=1 -m 1024" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else @@ -369,7 +390,7 @@ else fi #file -arg="test4.h5 -e $INFO_FILE" +arg="$FILE4 -e $INFO_FILE" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else @@ -381,27 +402,27 @@ fi # layout options (these files have no filters) ######################################################### -TOOLTEST test4.h5 -l dset2:CHUNK=20x10 -TOOLTEST test4.h5 -l CHUNK=20x10 -TOOLTEST test4.h5 -l dset2:CONTI -TOOLTEST test4.h5 -l CONTI -TOOLTEST test4.h5 -l dset2:COMPA -TOOLTEST test4.h5 -l COMPA +TOOLTEST $FILE4 -l dset2:CHUNK=20x10 +TOOLTEST $FILE4 -l CHUNK=20x10 +TOOLTEST $FILE4 -l dset2:CONTI +TOOLTEST $FILE4 -l CONTI +TOOLTEST $FILE4 -l dset2:COMPA +TOOLTEST $FILE4 -l COMPA ################################################################ # layout conversions (file has no filters) ############################################################### -arg1="test4.h5 -l dset_compact:CONTI" -arg2="test4.h5 -l dset_compact:CHUNK=2x5" -arg3="test4.h5 -l dset_compact:COMPA" -arg4="test4.h5 -l dset_contiguous:COMPA" -arg5="test4.h5 -l dset_contiguous:CHUNK=3x6" -arg6="test4.h5 -l dset_contiguous:CONTI" -arg7="test4.h5 -l dset_chunk:COMPA" -arg8="test4.h5 -l dset_chunk:CONTI" -arg9="test4.h5 -l dset_chunk:CHUNK=18x13" +arg1="$FILE4 -l dset_compact:CONTI" +arg2="$FILE4 -l dset_compact:CHUNK=2x5" +arg3="$FILE4 -l dset_compact:COMPA" +arg4="$FILE4 -l dset_contiguous:COMPA" +arg5="$FILE4 -l dset_contiguous:CHUNK=3x6" +arg6="$FILE4 -l dset_contiguous:CONTI" +arg7="$FILE4 -l dset_chunk:COMPA" +arg8="$FILE4 -l dset_chunk:CONTI" +arg9="$FILE4 -l dset_chunk:CHUNK=18x13" TOOLTEST $arg1 TOOLTEST $arg2 TOOLTEST $arg3 @@ -413,7 +434,7 @@ TOOLTEST $arg8 TOOLTEST $arg9 #native option -arg="test1.h5 -n" +arg="$FILE1 -n" TOOLTEST $arg diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c index 5dbb5ce..6d7180d 100644 --- a/tools/h5repack/h5repack_copy.c +++ b/tools/h5repack/h5repack_copy.c @@ -20,9 +20,7 @@ #include "h5tools_utils.h" #include "h5repack.h" - extern char *progname; - static int do_create_refs; @@ -31,8 +29,8 @@ static int do_create_refs; per = (float)fabs( ((float)B - (float)A) / (float) A ); \ } -#define FORMAT_OBJ " %-21s %s\n" /* obj type, name */ -#define FORMAT_OBJ_ATTR " %-21s %s\n" /* obj type, name */ +#define FORMAT_OBJ " %-27s %s\n" /* obj type, name */ +#define FORMAT_OBJ_ATTR " %-27s %s\n" /* obj type, name */ /* local functions */ static int do_hardlinks(hid_t fidout,trav_table_t *travt); @@ -148,9 +146,9 @@ static void print_dataset_info(hid_t dcpl_id, else { char str[255], temp[20]; - strcpy(str,"dset "); + strcpy(str,"dset "); strcat(str,strfilter); - sprintf(temp,"(%.2f%%)",per); + sprintf(temp," (%.1f%%)",per); strcat(str,temp); printf(FORMAT_OBJ,str,objname); } @@ -329,7 +327,7 @@ int do_copy_objects(hid_t fidin, if (options->verbose) { printf("-----------------------------------------\n"); - printf(" Type Filter (Ratio) Name\n"); + printf(" Type Filter (Ratio) Name\n"); printf("-----------------------------------------\n"); } @@ -337,6 +335,8 @@ int do_copy_objects(hid_t fidin, { buf = NULL; + do_create_refs = 0; + switch ( travt->objs[i].type ) { /*------------------------------------------------------------------------- @@ -629,10 +629,10 @@ int do_copy_objects(hid_t fidin, /* get the storage size of the input dataset */ dsize_out=H5Dget_storage_size(dset_out); PER((hssize_t)dsize_in,(hssize_t)dsize_out); - print_dataset_info(dcpl_out,travt->objs[i].name,per*(float)100.0); + print_dataset_info(dcpl_out,travt->objs[i].name,(float)(per*100.0)); } else - print_dataset_info(dcpl_id,travt->objs[i].name,0); + print_dataset_info(dcpl_id,travt->objs[i].name,(float)0); } if (apply_s==0 && options->verbose) @@ -1448,14 +1448,14 @@ static int copy_refs_attr(hid_t loc_in, hid_t fidout /* for saving references */ ) { - hid_t attr_id; /* attr ID */ - hid_t attr_out; /* attr ID */ - hid_t space_id; /* space ID */ - hid_t ftype_id; /* file type ID */ - hid_t wtype_id; /* read/write type ID */ - size_t msize; /* size of type */ - hsize_t nelmts; /* number of elements in dataset */ - int rank; /* rank of dataset */ + hid_t attr_id=-1; /* attr ID */ + hid_t attr_out=-1; /* attr ID */ + hid_t space_id=-1; /* space ID */ + hid_t ftype_id=-1; /* file type ID */ + hid_t wtype_id=-1; /* read/write type ID */ + size_t msize; /* size of type */ + hsize_t nelmts; /* number of elements in dataset */ + int rank; /* rank of dataset */ hsize_t dims[H5S_MAX_RANK];/* dimensions of dataset */ char name[255]; int n, j; diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c new file mode 100644 index 0000000..dc715a1 --- /dev/null +++ b/tools/h5repack/h5repacktst.c @@ -0,0 +1,4477 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "h5test.h"
+#include "h5repack.h"
+#include "h5diff.h"
+
+/* fill value test */
+#define FNAME0 "h5repack_fill.h5"
+#define FNAME0OUT "h5repack_fill_out.h5"
+/* HDF5 objects and all dataset datatypes */
+#define FNAME1 "h5repack_objs.h5"
+#define FNAME1OUT "h5repack_objs_out.h5"
+/* attributes, all datatypes */
+#define FNAME2 "h5repack_attr.h5"
+#define FNAME2OUT "h5repack_attr_out.h5"
+/* hard links */
+#define FNAME3 "h5repack_hlink.h5"
+#define FNAME3OUT "h5repack_hlink_out.h5"
+/* layout */
+#define FNAME4 "h5repack_layout.h5"
+#define FNAME4OUT "h5repack_layout_out.h5"
+/* H5D_ALLOC_TIME_EARLY */
+#define FNAME5 "h5repack_early.h5"
+#define FNAME5OUT "h5repack_early_out.h5"
+#define FNAME6 "h5repack_early2.h5"
+/* SZIP filter */
+#define FNAME7 "h5repack_szip.h5"
+#define FNAME7OUT "h5repack_szip_out.h5"
+/* GZIP filter */
+#define FNAME8 "h5repack_deflate.h5"
+#define FNAME8OUT "h5repack_deflate_out.h5"
+/* GZIP filter */
+#define FNAME9 "h5repack_shuffle.h5"
+#define FNAME9OUT "h5repack_shuffle_out.h5"
+/* Fletcher filter */
+#define FNAME10 "h5repack_fletcher.h5"
+#define FNAME10OUT "h5repack_fletcher_out.h5"
+/* All filters */
+#define FNAME11 "h5repack_filters.h5"
+#define FNAME11OUT "h5repack_filters_out.h5"
+/* NBit filter */
+#define FNAME12 "h5repack_nbit.h5"
+#define FNAME12OUT "h5repack_nbit_out.h5"
+/* Scale Offset filter */
+#define FNAME13 "h5repack_soffset.h5"
+#define FNAME13OUT "h5repack_soffset_out.h5"
+/* Big file to test read by hyperslabs */
+#define FNAME14 "h5repack_big.h5"
+#define FNAME14OUT "h5repack_big_out.h5"
+
+
+const char *H5REPACK_FILENAMES[] = {
+ "test_bigout",
+ NULL
+};
+
+const char *progname = "h5repacktst";
+int d_status = EXIT_SUCCESS;
+
+
+#define DIM1 40
+#define DIM2 20
+#define CDIM1 DIM1/2
+#define CDIM2 DIM2/2
+#define RANK 2
+#define GBLL ((unsigned long_long) 1024*1024*1024)
+
+/*-------------------------------------------------------------------------
+ * prototypes
+ *-------------------------------------------------------------------------
+ */
+int make_all_objects(hid_t loc_id);
+int make_attributes(hid_t loc_id);
+int make_hlinks(hid_t loc_id);
+int make_early(void);
+int make_layout(hid_t loc_id);
+#ifdef H5_HAVE_FILTER_SZIP
+int make_szip(hid_t loc_id);
+#endif /* H5_HAVE_FILTER_SZIP */
+int make_deflate(hid_t loc_id);
+int make_shuffle(hid_t loc_id);
+int make_fletcher32(hid_t loc_id);
+int make_nbit(hid_t loc_id);
+int make_scaleoffset(hid_t loc_id);
+int make_all(hid_t loc_id);
+int make_fill(hid_t loc_id);
+int make_big(hid_t loc_id);
+int make_testfiles(void);
+void write_dset_in(hid_t loc_id,const char* dset_name,hid_t file_id,int make_diffs );
+void write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs );
+int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *dset_name,hid_t type_id,void *buf );
+int make_dset(hid_t loc_id,const char *name,hid_t sid,hid_t dcpl,void *buf);
+int make_attr(hid_t loc_id,int rank,hsize_t *dims,const char *attr_name,hid_t type_id,void *buf);
+void make_dset_reg_ref(hid_t loc_id);
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: Executes h5repack tests
+ *
+ * Return: Success: zero
+ * Failure: 1
+ *
+ * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu>
+ * January, 6, 2004
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int main (void)
+{
+ pack_opt_t pack_options;
+ diff_opt_t diff_options;
+#if defined (H5_HAVE_FILTER_SZIP)
+ int szip_can_encode = 0;
+#endif
+ hid_t fapl;
+
+ /* initialize */
+ memset(&diff_options, 0, sizeof (diff_opt_t));
+ memset(&pack_options, 0, sizeof (pack_opt_t));
+
+ /* run tests */
+ puts("Testing h5repack:");
+
+ /* setup */
+ h5_reset();
+ fapl = h5_fileaccess();
+
+ /* make the test files */
+ TESTING(" generating datasets");
+ if (make_testfiles()<0)
+ goto error;
+ PASSED();
+
+/*-------------------------------------------------------------------------
+ * Format of the tests:
+ *
+ * 1) make a copy of the file with h5repack
+ * 2) use the h5diff utility to compare the input and output file;
+ * it returns RET==0 if the objects have the same data
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * file with fill values
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" copy of datasets (fill values)");
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME0,FNAME0OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME0,FNAME0OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME0OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_cmpdcpl(FNAME0,FNAME0OUT)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+/*-------------------------------------------------------------------------
+ * file with all kinds of dataset datatypes
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" copy of datasets (all datatypes)");
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME1OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_cmpdcpl(FNAME1,FNAME1OUT)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+/*-------------------------------------------------------------------------
+ * file with attributes
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" copy of datasets (attributes)");
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME2,FNAME2OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME2,FNAME2OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME2OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_cmpdcpl(FNAME2,FNAME2OUT)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+/*-------------------------------------------------------------------------
+ * file with hardlinks
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" copy of datasets (hardlinks)");
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME3,FNAME3OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME3,FNAME3OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME3OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_cmpdcpl(FNAME3,FNAME3OUT)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+
+/*-------------------------------------------------------------------------
+ * alloc early test
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" copy of allocation early file");
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME5,FNAME5OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME5,FNAME5OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME5OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+/*-------------------------------------------------------------------------
+ * the remaining files differ in the dcpl's
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * deflate
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" adding deflate filter");
+
+#ifdef H5_HAVE_FILTER_DEFLATE
+
+/*-------------------------------------------------------------------------
+ * test an individual object option
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset1:GZIP=9",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+/*-------------------------------------------------------------------------
+ * test all objects option
+ *-------------------------------------------------------------------------
+ */
+
+ TESTING(" adding deflate filter to all");
+
+#ifdef H5_HAVE_FILTER_DEFLATE
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("GZIP=1",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+/*-------------------------------------------------------------------------
+ * SZIP
+ *-------------------------------------------------------------------------
+ */
+
+ TESTING(" adding szip filter");
+
+#if defined (H5_HAVE_FILTER_SZIP)
+if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) {
+ szip_can_encode = 1;
+}
+
+/*-------------------------------------------------------------------------
+ * test an individual object option
+ *-------------------------------------------------------------------------
+ */
+
+if (szip_can_encode) {
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset2:SZIP=8,EC",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset2:CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+} else {
+ SKIPPED();
+}
+#else
+ SKIPPED();
+#endif
+
+
+/*-------------------------------------------------------------------------
+ * test all objects option
+ *-------------------------------------------------------------------------
+ */
+TESTING(" adding szip filter to all");
+
+#if defined (H5_HAVE_FILTER_SZIP)
+if (szip_can_encode) {
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("SZIP=8,NN",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+} else {
+ SKIPPED();
+}
+#else
+ SKIPPED();
+#endif
+
+
+ TESTING(" addding shuffle filter");
+
+#ifdef H5_HAVE_FILTER_SHUFFLE
+
+/*-------------------------------------------------------------------------
+ * test an individual object option
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset1:SHUF",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+/*-------------------------------------------------------------------------
+ * test all objects option
+ *-------------------------------------------------------------------------
+ */
+
+TESTING(" addding shuffle filter to all");
+
+#ifdef H5_HAVE_FILTER_SHUFFLE
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("SHUF",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" adding checksum filter");
+
+#ifdef H5_HAVE_FILTER_FLETCHER32
+
+/*-------------------------------------------------------------------------
+ * test an individual object option
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset1:FLET",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+/*-------------------------------------------------------------------------
+ * test all objects option
+ *-------------------------------------------------------------------------
+ */
+
+
+ TESTING(" adding checksum filter to all");
+
+#ifdef H5_HAVE_FILTER_FLETCHER32
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("FLET",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+
+ TESTING(" filter queue fletcher, shuffle, deflate, szip");
+
+/*-------------------------------------------------------------------------
+ * add some filters
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset1:CHUNK 20x10",&pack_options)<0)
+ TEST_ERROR;
+
+#if defined (H5_HAVE_FILTER_FLETCHER32)
+ if (h5repack_addfilter("dset1:FLET",&pack_options)<0)
+ TEST_ERROR;
+#endif
+
+#ifdef H5_HAVE_FILTER_SHUFFLE
+ if (h5repack_addfilter("dset1:SHUF",&pack_options)<0)
+ TEST_ERROR;
+#endif
+
+#if defined (H5_HAVE_FILTER_SZIP)
+if (szip_can_encode) {
+ if (h5repack_addfilter("dset1:SZIP=8,NN",&pack_options)<0)
+ TEST_ERROR;
+}
+#endif
+
+#ifdef H5_HAVE_FILTER_DEFLATE
+ if (h5repack_addfilter("dset1:GZIP=1",&pack_options)<0)
+ TEST_ERROR;
+#endif
+
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+
+
+ TESTING(" adding layout chunked");
+
+/*-------------------------------------------------------------------------
+ * test an individual object option
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+/*-------------------------------------------------------------------------
+ * test all objects option
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" adding layout chunked to all");
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("CHUNK=20x10",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+
+ TESTING(" adding layout contiguous");
+
+/*-------------------------------------------------------------------------
+ * test an individual object option
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset1:CONTI",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+
+ TESTING(" adding layout contiguous to all");
+
+/*-------------------------------------------------------------------------
+ * test all objects option
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("CONTI",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+
+ TESTING(" adding layout compact");
+
+/*-------------------------------------------------------------------------
+ * test an individual object option
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset1:COMPA",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" adding layout compact to all");
+
+/*-------------------------------------------------------------------------
+ * test all objects option
+ *-------------------------------------------------------------------------
+ */
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("COMPA",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+
+
+ TESTING(" layout compact to contiguous conversion");
+
+/*-------------------------------------------------------------------------
+ * layout compact to contiguous conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_compact:CONTI",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" layout compact to chunk conversion");
+
+/*-------------------------------------------------------------------------
+ * layout compact to chunk conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_compact:CHUNK=2x5",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" layout compact to compact conversion");
+
+/*-------------------------------------------------------------------------
+ * layout compact to compact conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_compact:COMPA",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" layout contiguous to compact conversion");
+/*-------------------------------------------------------------------------
+ * layout contiguous to compact conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_contiguous:COMPA",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" layout contiguous to chunk conversion");
+/*-------------------------------------------------------------------------
+ * layout contiguous to chunk conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_contiguous:CHUNK=3x6",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" layout contiguous to contiguous conversion");
+
+/*-------------------------------------------------------------------------
+ * layout contiguous to contiguous conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_contiguous:CONTI",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" layout chunked to compact conversion");
+/*-------------------------------------------------------------------------
+ * layout chunked to compact conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_chunk:COMPA",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" layout chunked to contiguous conversion");
+
+/*-------------------------------------------------------------------------
+ * layout chunked to contiguous conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_chunk:CONTI",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+ TESTING(" layout chunked to chunk conversion");
+/*-------------------------------------------------------------------------
+ * layout chunked to chunked conversion
+ *-------------------------------------------------------------------------
+ */
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addlayout("dset_chunk:CHUNK=18x13",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME4OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+
+/*-------------------------------------------------------------------------
+ * the following tests assume the input files have filters
+ * FNAME7
+ * FNAME8
+ * FNAME9
+ * FNAME10
+ * FNAME11
+ *-------------------------------------------------------------------------
+ */
+
+
+ TESTING(" copy of szip filter");
+
+#if defined (H5_HAVE_FILTER_SZIP)
+if (szip_can_encode) {
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME7OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+} else {
+ SKIPPED();
+}
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" removing szip filter");
+
+#if defined (H5_HAVE_FILTER_SZIP)
+if (szip_can_encode) {
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_szip:NONE",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME7OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+} else {
+ SKIPPED();
+}
+#else
+ SKIPPED();
+#endif
+
+
+ TESTING(" copy of deflate filter");
+
+#ifdef H5_HAVE_FILTER_DEFLATE
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME8OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+
+ TESTING(" removing deflate filter");
+
+#ifdef H5_HAVE_FILTER_DEFLATE
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_deflate:NONE",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME8OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+
+
+ TESTING(" copy of shuffle filter");
+
+#ifdef H5_HAVE_FILTER_SHUFFLE
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME9OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" removing shuffle filter");
+
+#ifdef H5_HAVE_FILTER_SHUFFLE
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_shuffle:NONE",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME9OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" copy of fletcher filter");
+
+#ifdef H5_HAVE_FILTER_FLETCHER32
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME10OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" removing fletcher filter");
+
+#ifdef H5_HAVE_FILTER_FLETCHER32
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_fletcher32:NONE",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME10OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+
+ TESTING(" copy of nbit filter");
+
+#ifdef H5_HAVE_FILTER_NBIT
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME12OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" removing nbit filter");
+
+#ifdef H5_HAVE_FILTER_NBIT
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_nbit:NONE",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME12OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" adding nbit filter");
+
+#ifdef H5_HAVE_FILTER_NBIT
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_int31:NBIT",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME12OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+ TESTING(" copy of scaleoffset filter");
+
+#ifdef H5_HAVE_FILTER_SCALEOFFSET
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME13OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" removing scaleoffset filter");
+
+#ifdef H5_HAVE_FILTER_SCALEOFFSET
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_scaleoffset:NONE",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME13OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+
+ TESTING(" adding scaleoffset filter");
+
+#ifdef H5_HAVE_FILTER_SCALEOFFSET
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_none:SOFF=31,IN",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME13OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+/*-------------------------------------------------------------------------
+ * file with all filters
+ * dset_all
+ * dset_deflate
+ * dset_szip
+ * dset_shuffle
+ * dset_fletcher32
+ *-------------------------------------------------------------------------
+ */
+
+
+ TESTING(" filter conversion from deflate to szip");
+
+#if defined (H5_HAVE_FILTER_SZIP) \
+ && defined (H5_HAVE_FILTER_DEFLATE) \
+ && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
+
+if (szip_can_encode) {
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_deflate:SZIP=8,NN",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME11OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+} else {
+ SKIPPED();
+}
+#else
+ SKIPPED();
+#endif
+
+ TESTING(" filter conversion from szip to deflate");
+
+#if defined (H5_HAVE_FILTER_SZIP) \
+ && defined (H5_HAVE_FILTER_DEFLATE) \
+ && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
+
+if (szip_can_encode) {
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("dset_szip:GZIP=1",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME11OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+} else {
+ SKIPPED();
+}
+#else
+ SKIPPED();
+#endif
+
+
+/*-------------------------------------------------------------------------
+ * test the NONE global option
+ *-------------------------------------------------------------------------
+ */
+
+ TESTING(" removing all filters");
+
+#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) \
+ && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE)
+
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack_addfilter("NONE",&pack_options)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME11OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+
+ PASSED();
+#else
+ SKIPPED();
+#endif
+
+/*-------------------------------------------------------------------------
+ * test a big file
+ *-------------------------------------------------------------------------
+ */
+ TESTING(" big file");
+ if (h5repack_init (&pack_options, 0)<0)
+ TEST_ERROR;
+ if (h5repack(FNAME14,FNAME14OUT,&pack_options) < 0)
+ TEST_ERROR;
+ if (h5diff(FNAME14,FNAME14OUT,NULL,NULL,&diff_options) == 1)
+ TEST_ERROR;
+ if (h5repack_verify(FNAME14OUT,&pack_options)<=0)
+ TEST_ERROR;
+ if (h5repack_end (&pack_options)<0)
+ TEST_ERROR;
+ PASSED();
+
+
+/*-------------------------------------------------------------------------
+ * end
+ *-------------------------------------------------------------------------
+ */
+
+ puts("All h5repack tests passed.");
+
+ h5_cleanup(H5REPACK_FILENAMES, fapl);
+
+ return 0;
+
+error:
+ puts("***** H5REPACK TESTS FAILED *****");
+ return 1;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_testfiles
+ *
+ * Purpose: make a test file with all types of HDF5 objects,
+ * datatypes and filters
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_testfiles(void)
+{
+ hid_t loc_id; /* file ID */
+
+
+/*-------------------------------------------------------------------------
+ * create a file for general copy test
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME0,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_fill(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create another file for general copy test (all datatypes)
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_all_objects(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create a file for attributes copy test
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_attributes(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+/*-------------------------------------------------------------------------
+ * create a file for hard links test
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME3,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_hlinks(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+/*-------------------------------------------------------------------------
+ * create a file for layouts test
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME4,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_layout(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create a file for the H5D_ALLOC_TIME_EARLY test
+ *-------------------------------------------------------------------------
+ */
+ if (make_early()<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * create a file with the SZIP filter
+ *-------------------------------------------------------------------------
+ */
+#ifdef H5_HAVE_FILTER_SZIP
+ if((loc_id = H5Fcreate(FNAME7,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_szip(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+#endif /* H5_HAVE_FILTER_SZIP */
+
+/*-------------------------------------------------------------------------
+ * create a file with the deflate filter
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME8,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_deflate(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create a file with the shuffle filter
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME9,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_shuffle(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create a file with the fletcher32 filter
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME10,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_fletcher32(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create a file with all the filters
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME11,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_all(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create a file with the nbit filter
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME12,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_nbit(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create a file with the scaleoffset filter
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME13,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_scaleoffset(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+/*-------------------------------------------------------------------------
+ * create a big file
+ *-------------------------------------------------------------------------
+ */
+ if((loc_id = H5Fcreate(FNAME14,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (make_big(loc_id)<0)
+ goto out;
+ if(H5Fclose(loc_id)<0)
+ return -1;
+
+ return 0;
+
+out:
+ H5Fclose(loc_id);
+ return -1;
+}
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_all_objects
+ *
+ * Purpose: make a test file with all types of HDF5 objects
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_all_objects(hid_t loc_id)
+{
+ hid_t dset_id;
+ hid_t group_id;
+ hid_t type_id;
+ hid_t root_id;
+ hid_t space_id;
+ hsize_t dims[1]={2};
+ /* Compound datatype */
+ typedef struct s_t
+ {
+ int a;
+ float b;
+ } s_t;
+
+/*-------------------------------------------------------------------------
+ * H5G_DATASET
+ *-------------------------------------------------------------------------
+ */
+ space_id = H5Screate_simple(1,dims,NULL);
+ dset_id = H5Dcreate(loc_id,"dset_referenced",H5T_NATIVE_INT,space_id,H5P_DEFAULT);
+ H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5G_GROUP
+ *-------------------------------------------------------------------------
+ */
+ group_id = H5Gcreate(loc_id,"g1",0);
+ root_id = H5Gopen(loc_id, "/");
+
+/*-------------------------------------------------------------------------
+ * H5G_TYPE
+ *-------------------------------------------------------------------------
+ */
+
+ /* Create a memory compound datatype */
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_INT);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT);
+ /* Commit compound datatype and close it */
+ H5Tcommit(loc_id, "type", type_id);
+ H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5G_LINK
+ *-------------------------------------------------------------------------
+ */
+
+ H5Glink(loc_id, H5L_TYPE_SOFT, "dset", "link");
+
+/*-------------------------------------------------------------------------
+ * H5G_UDLINK
+ *-------------------------------------------------------------------------
+ */
+ /* Create an external link. Other UD links are not supported by h5repack */
+ H5Lcreate_external("file", "path", loc_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT);
+
+/*-------------------------------------------------------------------------
+ * write a series of datasetes
+ *-------------------------------------------------------------------------
+ */
+
+ write_dset_in(root_id,"dset_referenced",loc_id,0);
+
+ /* Close */
+ H5Dclose(dset_id);
+ H5Gclose(group_id);
+ H5Gclose(root_id);
+
+ return 0;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_attributes
+ *
+ * Purpose: make a test file with all types of attributes
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_attributes(hid_t loc_id)
+{
+ hid_t dset_id;
+ hid_t group_id;
+ hid_t root_id;
+ hid_t space_id;
+ hsize_t dims[1]={2};
+
+
+/*-------------------------------------------------------------------------
+ * H5G_DATASET
+ *-------------------------------------------------------------------------
+ */
+
+ space_id = H5Screate_simple(1,dims,NULL);
+ dset_id = H5Dcreate(loc_id,"dset",H5T_NATIVE_INT,space_id,H5P_DEFAULT);
+ H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5G_GROUP
+ *-------------------------------------------------------------------------
+ */
+ group_id = H5Gcreate(loc_id,"g1",0);
+ root_id = H5Gopen(loc_id, "/");
+
+/*-------------------------------------------------------------------------
+ * write a series of attributes on the dataset, group, and root group
+ *-------------------------------------------------------------------------
+ */
+
+ write_attr_in(dset_id,"dset",loc_id,0);
+ write_attr_in(group_id,"dset",loc_id,0);
+ write_attr_in(root_id,"dset",loc_id,0);
+
+ /* Close */
+ H5Dclose(dset_id);
+ H5Gclose(group_id);
+ H5Gclose(root_id);
+
+ return 0;
+
+}
+
+/*-------------------------------------------------------------------------
+ * Function: make_hlinks
+ *
+ * Purpose: make a test file with hard links
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_hlinks(hid_t loc_id)
+{
+ hid_t group1_id;
+ hid_t group2_id;
+ hid_t group3_id;
+ hsize_t dims[2]={3,2};
+ int buf[3][2]= {{1,1},{1,2},{2,2}};
+
+/*-------------------------------------------------------------------------
+ * create a dataset and some hard links to it
+ *-------------------------------------------------------------------------
+ */
+
+ if (write_dset(loc_id,2,dims,"dset",H5T_NATIVE_INT,buf)<0)
+ return -1;
+ if (H5Glink(loc_id, H5L_TYPE_HARD, "dset", "link1 to dset")<0)
+ return -1;
+ if (H5Glink(loc_id, H5L_TYPE_HARD, "dset", "link2 to dset")<0)
+ return -1;
+ if (H5Glink(loc_id, H5L_TYPE_HARD, "dset", "link3 to dset")<0)
+ return -1;
+
+
+/*-------------------------------------------------------------------------
+ * create a group and some hard links to it
+ *-------------------------------------------------------------------------
+ */
+
+ if ((group1_id = H5Gcreate(loc_id,"g1",0))<0)
+ return -1;
+ if ((group2_id = H5Gcreate(group1_id,"g2",0))<0)
+ return -1;
+ if ((group3_id = H5Gcreate(group2_id,"g3",0))<0)
+ return -1;
+
+ if (H5Glink2(loc_id, "g1", H5L_TYPE_HARD, group2_id, "link1 to g1")<0)
+ return -1;
+ if (H5Glink2(group1_id, "g2", H5L_TYPE_HARD, group3_id, "link1 to g2")<0)
+ return -1;
+
+ H5Gclose(group1_id);
+ H5Gclose(group2_id);
+ H5Gclose(group3_id);
+
+ return 0;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_szip
+ *
+ * Purpose: make a dataset with the SZIP filter
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifdef H5_HAVE_FILTER_SZIP
+int make_szip(hid_t loc_id)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+ unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
+ unsigned szip_pixels_per_block=8;
+ hsize_t dims[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf[DIM1][DIM2];
+ int i, j, n;
+ int szip_can_encode = 0;
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf[i][j]=n++;
+ }
+ }
+ /* create a space */
+ if((sid = H5Screate_simple(RANK, dims, NULL))<0)
+ return -1;
+ /* create a dcpl */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ /* set up chunk */
+ if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * SZIP
+ *-------------------------------------------------------------------------
+ */
+ /* Make sure encoding is enabled */
+if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) {
+ szip_can_encode = 1;
+}
+if (szip_can_encode) {
+ /* set szip data */
+ if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_szip",sid,dcpl,buf)<0)
+ goto out;
+} else {
+ /* WARNING? SZIP is decoder only, can't generate test files */
+}
+
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+}
+#endif /* H5_HAVE_FILTER_SZIP */
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_deflate
+ *
+ * Purpose: make a dataset with the deflate filter
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_deflate(hid_t loc_id)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+ hsize_t dims[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf[DIM1][DIM2];
+ hobj_ref_t bufref[1]; /* reference */
+ hsize_t dims1r[1]={1};
+ int i, j, n;
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf[i][j]=n++;
+ }
+ }
+
+ /* create a space */
+ if((sid = H5Screate_simple(RANK, dims, NULL))<0)
+ return -1;
+ /* create a dcpl */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ /* set up chunk */
+ if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0)
+ goto out;
+/*-------------------------------------------------------------------------
+ * GZIP
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_DEFLATE)
+ /* set deflate data */
+ if(H5Pset_deflate(dcpl, 9)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf)<0)
+ goto out;
+
+ /* create a reference to the dataset, test second seeep of file for references */
+
+ if (H5Rcreate(&bufref[0],loc_id,"dset_deflate",H5R_OBJECT,-1)<0)
+ goto out;
+ if (write_dset(loc_id,1,dims1r,"ref",H5T_STD_REF_OBJ,bufref)<0)
+ goto out;
+#endif
+
+/*-------------------------------------------------------------------------
+ * close space and dcpl
+ *-------------------------------------------------------------------------
+ */
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_shuffle
+ *
+ * Purpose: make a dataset with the shuffle filter
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_shuffle(hid_t loc_id)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+ hsize_t dims[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf[DIM1][DIM2];
+ int i, j, n;
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf[i][j]=n++;
+ }
+ }
+ /* create a space */
+ if((sid = H5Screate_simple(RANK, dims, NULL))<0)
+ return -1;
+ /* create a dcpl */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ /* set up chunk */
+ if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * shuffle
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_SHUFFLE)
+ /* set the shuffle filter */
+ if (H5Pset_shuffle(dcpl)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf)<0)
+ goto out;
+#endif
+
+/*-------------------------------------------------------------------------
+ * close space and dcpl
+ *-------------------------------------------------------------------------
+ */
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: make_fletcher32
+ *
+ * Purpose: make a dataset with the fletcher32 filter
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_fletcher32(hid_t loc_id)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+ hsize_t dims[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf[DIM1][DIM2];
+ int i, j, n;
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf[i][j]=n++;
+ }
+ }
+ /* create a space */
+ if((sid = H5Screate_simple(RANK, dims, NULL))<0)
+ return -1;
+ /* create a dataset creation property list; the same DCPL is used for all dsets */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ /* set up chunk */
+ if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0)
+ goto out;
+
+
+/*-------------------------------------------------------------------------
+ * fletcher32
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_FLETCHER32)
+ /* remove the filters from the dcpl */
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ goto out;
+ /* set the checksum filter */
+ if (H5Pset_fletcher32(dcpl)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf)<0)
+ goto out;
+#endif
+
+/*-------------------------------------------------------------------------
+ * close space and dcpl
+ *-------------------------------------------------------------------------
+ */
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_nbit
+ *
+ * Purpose: make a dataset with the nbit filter
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_nbit(hid_t loc_id)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+ hid_t dtid;
+ hid_t dsid;
+ hsize_t dims[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf[DIM1][DIM2];
+ int i, j, n;
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf[i][j]=n++;
+ }
+ }
+ /* create a space */
+ if((sid = H5Screate_simple(RANK, dims, NULL))<0)
+ return -1;
+ /* create a dataset creation property list; the same DCPL is used for all dsets */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ /* set up chunk */
+ if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0)
+ goto out;
+
+ dtid = H5Tcopy(H5T_NATIVE_INT);
+ if (H5Tset_precision(dtid,(H5Tget_precision(dtid) - 1)) < 0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+
+#if defined (H5_HAVE_FILTER_NBIT)
+ /* remove the filters from the dcpl */
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if (H5Pset_nbit(dcpl)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if((dsid = H5Dcreate (loc_id,"dset_nbit",dtid,sid,dcpl))<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ H5Dclose(dsid);
+
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if((dsid = H5Dcreate (loc_id,"dset_int31",dtid,sid,dcpl))<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ H5Dclose(dsid);
+#endif
+
+/*-------------------------------------------------------------------------
+ * close
+ *-------------------------------------------------------------------------
+ */
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+ if (H5Tclose(dtid)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_scaleoffset
+ *
+ * Purpose: make a dataset with the scaleoffset filter
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_scaleoffset(hid_t loc_id)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+ hid_t dtid;
+ hid_t dsid;
+ hsize_t dims[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf[DIM1][DIM2];
+ int i, j, n;
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf[i][j]=n++;
+ }
+ }
+ /* create a space */
+ if((sid = H5Screate_simple(RANK, dims, NULL))<0)
+ return -1;
+ /* create a dataset creation property list; the same DCPL is used for all dsets */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ /* set up chunk */
+ if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0)
+ goto out;
+
+ dtid = H5Tcopy(H5T_NATIVE_INT);
+
+#if defined (H5_HAVE_FILTER_SCALEOFFSET)
+ /* remove the filters from the dcpl */
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if (H5Pset_scaleoffset(dcpl,H5Z_SO_INT,31)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if((dsid = H5Dcreate (loc_id,"dset_scaleoffset",dtid,sid,dcpl))<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ H5Dclose(dsid);
+ if((dsid = H5Dcreate (loc_id,"dset_none",dtid,sid,H5P_DEFAULT))<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ {
+ H5Tclose(dtid);
+ goto out;
+ }
+ H5Tclose(dtid);
+ H5Dclose(dsid);
+#endif
+
+/*-------------------------------------------------------------------------
+ * close space and dcpl
+ *-------------------------------------------------------------------------
+ */
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_all
+ *
+ * Purpose: make a file with all filters
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_all(hid_t loc_id)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+#if defined (H5_HAVE_FILTER_NBIT)
+ hid_t dtid;
+ hid_t dsid;
+#endif /* H5_HAVE_FILTER_NBIT */
+#if defined (H5_HAVE_FILTER_SZIP)
+ unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
+ unsigned szip_pixels_per_block=8;
+#endif /* H5_HAVE_FILTER_SZIP */
+ hsize_t dims[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf[DIM1][DIM2];
+ int i, j, n;
+#if defined (H5_HAVE_FILTER_SZIP)
+ int szip_can_encode = 0;
+#endif
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf[i][j]=n++;
+ }
+ }
+ /* create a space */
+ if((sid = H5Screate_simple(RANK, dims, NULL))<0)
+ return -1;
+ /* create a dataset creation property list; the same DCPL is used for all dsets */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ /* set up chunk */
+ if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0)
+ goto out;
+
+#if defined (H5_HAVE_FILTER_SHUFFLE)
+ /* set the shuffle filter */
+ if (H5Pset_shuffle(dcpl)<0)
+ goto out;
+#endif
+
+#if defined (H5_HAVE_FILTER_FLETCHER32)
+ /* set the checksum filter */
+ if (H5Pset_fletcher32(dcpl)<0)
+ goto out;
+#endif
+
+#if defined (H5_HAVE_FILTER_SZIP)
+if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) {
+ szip_can_encode = 1;
+}
+if (szip_can_encode) {
+ /* set szip data */
+ if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block)<0)
+ goto out;
+} else {
+ /* WARNING? SZIP is decoder only, can't generate test data using szip */
+}
+#endif
+
+#if defined (H5_HAVE_FILTER_DEFLATE)
+ /* set deflate data */
+ if(H5Pset_deflate(dcpl, 9)<0)
+ goto out;
+#endif
+
+ if (make_dset(loc_id,"dset_all",sid,dcpl,buf)<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * fletcher32
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_FLETCHER32)
+ /* remove the filters from the dcpl */
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ goto out;
+ /* set the checksum filter */
+ if (H5Pset_fletcher32(dcpl)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf)<0)
+ goto out;
+#endif
+
+/*-------------------------------------------------------------------------
+ * SZIP
+ *-------------------------------------------------------------------------
+ */
+ /* Make sure encoding is enabled */
+#if defined (H5_HAVE_FILTER_SZIP)
+if (szip_can_encode) {
+ /* remove the filters from the dcpl */
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ goto out;
+ /* set szip data */
+ if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_szip",sid,dcpl,buf)<0)
+ goto out;
+} else {
+ /* WARNING? SZIP is decoder only, can't generate test dataset */
+}
+#endif
+
+/*-------------------------------------------------------------------------
+ * shuffle
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_SHUFFLE)
+ /* remove the filters from the dcpl */
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ goto out;
+ /* set the shuffle filter */
+ if (H5Pset_shuffle(dcpl)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf)<0)
+ goto out;
+#endif
+
+/*-------------------------------------------------------------------------
+ * GZIP
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_DEFLATE)
+ /* remove the filters from the dcpl */
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ goto out;
+ /* set deflate data */
+ if(H5Pset_deflate(dcpl, 1)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf)<0)
+ goto out;
+#endif
+
+
+/*-------------------------------------------------------------------------
+ * nbit
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5_HAVE_FILTER_NBIT)
+ /* remove the filters from the dcpl */
+ if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0)
+ goto out;
+ /* set the shuffle filter */
+ if (H5Pset_nbit(dcpl)<0)
+ goto out;
+ dtid = H5Tcopy(H5T_NATIVE_INT);
+ H5Tset_precision(dtid,(H5Tget_precision(dtid)-1));
+ if((dsid = H5Dcreate (loc_id,"dset_nbit",dtid,sid,dcpl))<0)
+ goto out;
+ if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ goto out;
+
+ /* close */
+ if(H5Tclose(dtid)<0)
+ return -1;
+ if(H5Dclose(dsid)<0)
+ return -1;
+#endif
+
+/*-------------------------------------------------------------------------
+ * close space and dcpl
+ *-------------------------------------------------------------------------
+ */
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_early
+ *
+ * Purpose: create a file for the H5D_ALLOC_TIME_EARLY test
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_early(void)
+{
+ hsize_t dims[1] ={3000};
+ hsize_t cdims[1]={30};
+ hid_t fid=-1;
+ hid_t dset_id=-1;
+ hid_t sid=-1;
+ hid_t tid=-1;
+ hid_t dcpl=-1;
+ int i;
+ char name[10];
+ int iter=100;
+
+ if ((fid = H5Fcreate(FNAME5,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+ if (H5Fclose(fid)<0)
+ goto out;
+
+ if ((sid = H5Screate_simple(1, dims, NULL))<0)
+ goto out;
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ if (H5Pset_chunk(dcpl,1,cdims)<0)
+ goto out;
+ if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY)<0)
+ goto out;
+
+ for (i=0; i<iter; i++)
+ {
+ if ((fid = H5Fopen(FNAME5,H5F_ACC_RDWR,H5P_DEFAULT))<0)
+ goto out;
+ if ((dset_id = H5Dcreate(fid,"early",H5T_NATIVE_DOUBLE,sid,dcpl))<0)
+ goto out;
+ if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE))<0)
+ goto out;
+ sprintf(name,"%d", i);
+ if ((H5Tcommit(fid,name,tid))<0)
+ goto out;
+ if (H5Tclose(tid)<0)
+ goto out;
+ if (H5Dclose(dset_id)<0)
+ goto out;
+ if (H5Gunlink(fid,"early")<0)
+ goto out;
+ if (H5Fclose(fid)<0)
+ goto out;
+ }
+
+/*-------------------------------------------------------------------------
+ * do the same without close/opening the file and creating the dataset
+ *-------------------------------------------------------------------------
+ */
+
+ if ((fid = H5Fcreate(FNAME6,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ return -1;
+
+ for (i=0; i<iter; i++)
+ {
+ if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE))<0)
+ goto out;
+ sprintf(name,"%d", i);
+ if ((H5Tcommit(fid,name,tid))<0)
+ goto out;
+ if (H5Tclose(tid)<0)
+ goto out;
+ }
+
+ if (H5Sclose(sid)<0)
+ goto out;
+ if (H5Pclose(dcpl)<0)
+ goto out;
+ if (H5Fclose(fid)<0)
+ goto out;
+
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Tclose(tid);
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ H5Dclose(dset_id);
+ H5Fclose(fid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_layout
+ *
+ * Purpose: make several datasets with several layouts in location LOC_ID
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_layout(hid_t loc_id)
+{
+ hid_t dcpl; /* dataset creation property list */
+ hid_t sid; /* dataspace ID */
+ hsize_t dims[RANK]={DIM1,DIM2};
+ hsize_t chunk_dims[RANK]={CDIM1,CDIM2};
+ int buf[DIM1][DIM2];
+ int i, j, n;
+ char name[6];
+
+
+ for (i=n=0; i<DIM1; i++){
+ for (j=0; j<DIM2; j++){
+ buf[i][j]=n++;
+ }
+ }
+
+/*-------------------------------------------------------------------------
+ * make several dataset with no filters
+ *-------------------------------------------------------------------------
+ */
+ for (i=0; i<4; i++)
+ {
+ sprintf(name,"dset%d",i+1);
+ if (write_dset(loc_id,RANK,dims,name,H5T_NATIVE_INT,buf)<0)
+ return -1;
+ }
+
+
+/*-------------------------------------------------------------------------
+ * make several dataset with several layout options
+ *-------------------------------------------------------------------------
+ */
+ /* create a space */
+ if((sid = H5Screate_simple(RANK, dims, NULL))<0)
+ return -1;
+ /* create a dataset creation property list; the same DCPL is used for all dsets */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * H5D_COMPACT
+ *-------------------------------------------------------------------------
+ */
+ if(H5Pset_layout (dcpl,H5D_COMPACT)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_compact",sid,dcpl,buf)<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * H5D_CONTIGUOUS
+ *-------------------------------------------------------------------------
+ */
+ if(H5Pset_layout (dcpl,H5D_CONTIGUOUS)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_contiguous",sid,dcpl,buf)<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * H5D_CHUNKED
+ *-------------------------------------------------------------------------
+ */
+ if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0)
+ goto out;
+ if (make_dset(loc_id,"dset_chunk",sid,dcpl,buf)<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * close space and dcpl
+ *-------------------------------------------------------------------------
+ */
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: make a file with an integer dataset with a fill value
+ *
+ * Purpose: test copy of fill values
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_fill(hid_t loc_id)
+{
+ hid_t did=-1;
+ hid_t sid=-1;
+ hid_t dcpl;
+ hsize_t dims[2]={3,2};
+ int buf[3][2]= {{1,1},{1,2},{2,2}};
+ int fillvalue=2;
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER, write a fill value
+ *-------------------------------------------------------------------------
+ */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue)<0)
+ goto out;
+ if ((sid = H5Screate_simple(2,dims,NULL))<0)
+ goto out;
+ if ((did = H5Dcreate(loc_id,"dset_fill",H5T_NATIVE_INT,sid,dcpl))<0)
+ goto out;
+ if (H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ goto out;
+
+ /* close */
+ if(H5Sclose(sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+ if(H5Dclose(did)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(sid);
+ H5Dclose(did);
+ } H5E_END_TRY;
+ return -1;
+
+}
+
+/*-------------------------------------------------------------------------
+ * Function: make_big
+ *
+ * Purpose: used in test read by hyperslabs. create a dataset with 1GB dimensions
+ * by iterating trough 1MB hyperslabs
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int make_big(hid_t loc_id)
+{
+ hid_t did=-1;
+ hid_t f_sid=-1;
+ hid_t m_sid=-1;
+ hid_t tid;
+ hid_t dcpl;
+ hsize_t dims[1]={GBLL}; /* dataset dimensions */
+ hsize_t hs_size[1]={GBLL/1024}; /* hyperslab dimensions */
+ hsize_t chunk_dims[1]={GBLL/1024}; /* chunk dimensions */
+ hsize_t hs_start[1];
+ size_t size;
+ size_t nelmts=(size_t)GBLL/1024;
+ char fillvalue=-1;
+ char *buf=NULL;
+ int i, j, s;
+ char c;
+
+ /* create */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0)
+ goto out;
+ if (H5Pset_fill_value(dcpl, H5T_NATIVE_CHAR, &fillvalue)<0)
+ goto out;
+ if(H5Pset_chunk(dcpl, 1, chunk_dims)<0)
+ goto out;
+ if ((f_sid = H5Screate_simple(1,dims,NULL))<0)
+ goto out;
+ if ((did = H5Dcreate(loc_id,"big",H5T_NATIVE_CHAR,f_sid,dcpl))<0)
+ goto out;
+ if ((m_sid = H5Screate_simple(1, hs_size, hs_size))<0)
+ goto out;
+ if ((tid = H5Dget_type(did))<0)
+ goto out;
+ if ((size = H5Tget_size(tid))<=0)
+ goto out;
+
+ /* create a evenly divided buffer from 0 to 127 */
+ buf=(char *) HDmalloc((unsigned)(nelmts*size));
+ s = 1024 / 127;
+ for (i=0, j=0, c=0; i<1024; j++, i++)
+ {
+ if ( j==s)
+ {
+ c++;
+ j=0;
+ };
+
+ HDmemset(buf, c, nelmts);
+
+ hs_start[0] = i * GBLL/1024;
+ if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL)<0)
+ goto out;
+ if (H5Dwrite (did,H5T_NATIVE_CHAR,m_sid,f_sid,H5P_DEFAULT,buf)<0)
+ goto out;
+
+ /* write only one hyperslab */
+ if (i==0)
+ break;
+
+ }
+ free(buf);
+ buf=NULL;
+
+ /* close */
+ if(H5Sclose(f_sid)<0)
+ goto out;
+ if(H5Sclose(m_sid)<0)
+ goto out;
+ if(H5Pclose(dcpl)<0)
+ goto out;
+ if(H5Dclose(did)<0)
+ goto out;
+
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Pclose(dcpl);
+ H5Sclose(f_sid);
+ H5Sclose(m_sid);
+ H5Dclose(did);
+ } H5E_END_TRY;
+ return -1;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: write_dset_in
+ *
+ * Purpose: write datasets in LOC_ID
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: November 12, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+void write_dset_in(hid_t loc_id,
+ const char* dset_name, /* for saving reference to dataset*/
+ hid_t file_id,
+ int make_diffs /* flag to modify data buffers */)
+{
+ /* Compound datatype */
+ typedef struct s_t
+ {
+ char a;
+ double b;
+ } s_t;
+
+ typedef enum
+ {
+ RED,
+ GREEN
+ } e_t;
+
+ hid_t dset_id;
+ hid_t space_id;
+ hid_t type_id;
+ hid_t plist_id;
+ herr_t status;
+ int val, i, j, k, n;
+ float f;
+
+ /* create 1D attributes with dimension [2], 2 elements */
+ hsize_t dims[1]={2};
+ hsize_t dims1r[1]={1};
+ char buf1[2][2]= {"ab","de"}; /* string */
+ char buf2[2]= {1,2}; /* bitfield, opaque */
+ s_t buf3[2]= {{1,2},{3,4}}; /* compound */
+ hobj_ref_t buf4[1]; /* reference */
+ e_t buf45[2]= {RED,GREEN}; /* enum */
+ hvl_t buf5[2]; /* vlen */
+ hsize_t dimarray[1]={3}; /* array dimension */
+ int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
+ int buf7[2]= {1,2}; /* integer */
+ float buf8[2]= {1,2}; /* float */
+
+ /* create 2D attributes with dimension [3][2], 6 elements */
+ hsize_t dims2[2]={3,2};
+ hsize_t dims2r[2]={1,1};
+ char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */
+ char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
+ s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
+ hobj_ref_t buf42[1][1]; /* reference */
+ hvl_t buf52[3][2]; /* vlen */
+ int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
+ int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
+ float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
+
+ /* create 3D attributes with dimension [4][3][2], 24 elements */
+ hsize_t dims3[3]={4,3,2};
+ hsize_t dims3r[3]={1,1,1};
+ char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
+ "rs","tu","vw","xz","AB","CD","EF","GH",
+ "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
+ char buf23[4][3][2]; /* bitfield, opaque */
+ s_t buf33[4][3][2]; /* compound */
+ hobj_ref_t buf43[1][1][1]; /* reference */
+ hvl_t buf53[4][3][2]; /* vlen */
+ int buf63[24][3]; /* array */
+ int buf73[4][3][2]; /* integer */
+ float buf83[4][3][2]; /* float */
+
+
+/*-------------------------------------------------------------------------
+ * 1D
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ for (j=0; j<2; j++)
+ {
+ buf1[i][j]='z';
+ }
+ }
+
+
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ write_dset(loc_id,1,dims,"string",type_id,buf1);
+ status = H5Tclose(type_id);
+
+
+ /* create hard link */
+ status = H5Glink(loc_id, H5L_TYPE_HARD, "string", "string_link");
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ buf2[i]=buf2[1]=0;
+ }
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ write_dset(loc_id,1,dims,"bitfield",type_id,buf2);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf3[i].a=0; buf3[i].b=0;
+ }
+ }
+
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ write_dset(loc_id,1,dims,"opaque",type_id,buf2);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf45[i]=GREEN;
+ }
+ }
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ write_dset(loc_id,1,dims,"compound",type_id,buf3);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* object references ( H5R_OBJECT ) */
+ if (dset_name)
+ {
+ status=H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1);
+ write_dset(loc_id,1,dims1r,"refobj",H5T_STD_REF_OBJ,buf4);
+ }
+
+ /* Dataset region reference ( H5R_DATASET_REGION ) */
+ make_dset_reg_ref(loc_id);
+
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ write_dset(loc_id,1,dims,"enum",type_id,buf45);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+ /* Allocate and initialize VL dataset to write */
+
+ buf5[0].len = 1;
+ buf5[0].p = malloc( 1 * sizeof(int));
+ ((int *)buf5[0].p)[0]=1;
+ buf5[1].len = 2;
+ buf5[1].p = malloc( 2 * sizeof(int));
+ ((int *)buf5[1].p)[0]=2;
+ ((int *)buf5[1].p)[1]=3;
+
+ if (make_diffs)
+ {
+ ((int *)buf5[0].p)[0]=0;
+ ((int *)buf5[1].p)[0]=0;
+ ((int *)buf5[1].p)[1]=0;
+ }
+
+ space_id = H5Screate_simple(1,dims,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ dset_id = H5Dcreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT);
+ status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf5);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5);
+ assert(status>=0);
+ status = H5Dclose(dset_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ for (j=0; j<3; j++)
+ {
+ buf6[i][j]=0;
+ }
+ }
+
+ type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL);
+ write_dset(loc_id,1,dims,"array",type_id,buf6);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER and H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf7[i]=0;
+ buf8[i]=0;
+ }
+ }
+
+ write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7);
+ write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8);
+
+
+/*-------------------------------------------------------------------------
+ * 2D
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf12, 'z', sizeof buf12);
+ }
+
+
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ write_dset(loc_id,2,dims2,"string2D",type_id,buf12);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+
+ if (make_diffs)
+ {
+ memset(buf22,0,sizeof buf22);
+ }
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ write_dset(loc_id,2,dims2,"bitfield2D",type_id,buf22);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ write_dset(loc_id,2,dims2,"opaque2D",type_id,buf22);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf32,0,sizeof buf32);
+ }
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ write_dset(loc_id,2,dims2,"compound2D",type_id,buf32);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* Create references to dataset */
+ if (dset_name)
+ {
+ for (i = 0; i < 1; i++) {
+ for (j = 0; j < 1; j++) {
+ status=H5Rcreate(&buf42[i][j],file_id,dset_name,H5R_OBJECT,-1);
+ }
+ }
+ write_dset(loc_id,2,dims2r,"refobj2D",H5T_STD_REF_OBJ,buf42);
+ }
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ write_dset(loc_id,2,dims2,"enum2D",type_id,0);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+/* Allocate and initialize VL dataset to write */
+ n=0;
+ for (i = 0; i < 3; i++) {
+ for (j = 0; j < 2; j++) {
+ int l;
+ buf52[i][j].p = malloc((i + 1) * sizeof(int));
+ buf52[i][j].len = i + 1;
+ for (l = 0; l < i + 1; l++)
+ if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
+ else ((int *)buf52[i][j].p)[l] = n++;
+ }
+ }
+
+ space_id = H5Screate_simple(2,dims2,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ dset_id = H5Dcreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT);
+ status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf52);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52);
+ assert(status>=0);
+ status = H5Dclose(dset_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf62,0,sizeof buf62);
+ }
+
+
+ type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL);
+ write_dset(loc_id,2,dims2,"array2D",type_id,buf62);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER, write a fill value
+ *-------------------------------------------------------------------------
+ */
+
+
+ if (make_diffs)
+ {
+ memset(buf72,0,sizeof buf72);
+ memset(buf82,0,sizeof buf82);
+ }
+
+
+ plist_id = H5Pcreate(H5P_DATASET_CREATE);
+ space_id = H5Screate_simple(2,dims2,NULL);
+ dset_id = H5Dcreate(loc_id,"integer2D",H5T_NATIVE_INT,space_id,plist_id);
+ status = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf72);
+ status = H5Pclose(plist_id);
+ status = H5Dclose(dset_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+
+ write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82);
+
+
+/*-------------------------------------------------------------------------
+ * 3D
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf13,'z',sizeof buf13);
+ }
+
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ write_dset(loc_id,3,dims3,"string3D",type_id,buf13);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+
+ n=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) buf23[i][j][k]=0;
+ else buf23[i][j][k]=n++;
+ }
+ }
+ }
+
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ write_dset(loc_id,3,dims3,"bitfield3D",type_id,buf23);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ write_dset(loc_id,3,dims3,"opaque3D",type_id,buf23);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+
+ n=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) {
+ buf33[i][j][k].a=0;
+ buf33[i][j][k].b=0;
+ }
+ else {
+ buf33[i][j][k].a=n++;
+ buf33[i][j][k].b=n++;
+ }
+ }
+ }
+ }
+
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ write_dset(loc_id,3,dims3,"compound3D",type_id,buf33);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* Create references to dataset */
+ if (dset_name)
+ {
+ for (i = 0; i < 1; i++) {
+ for (j = 0; j < 1; j++) {
+ for (k = 0; k < 1; k++)
+ status=H5Rcreate(&buf43[i][j][k],file_id,dset_name,H5R_OBJECT,-1);
+ }
+ }
+ write_dset(loc_id,3,dims3r,"refobj3D",H5T_STD_REF_OBJ,buf43);
+ }
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ write_dset(loc_id,3,dims3,"enum3D",type_id,0);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+ /* Allocate and initialize VL dataset to write */
+ n=0;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ int l;
+ buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
+ buf53[i][j][k].len = i + 1;
+ for (l = 0; l < i + 1; l++)
+ if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0;
+ else ((int *)buf53[i][j][k].p)[l] = n++;
+ }
+ }
+ }
+
+ space_id = H5Screate_simple(3,dims3,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ dset_id = H5Dcreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT);
+ status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf53);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53);
+ assert(status>=0);
+ status = H5Dclose(dset_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+
+
+ n=1;
+ for (i = 0; i < 24; i++) {
+ for (j = 0; j < (int)dimarray[0]; j++) {
+ if (make_diffs) buf63[i][j]=0;
+ else buf63[i][j]=n++;
+ }
+ }
+
+ type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL);
+ write_dset(loc_id,3,dims3,"array3D",type_id,buf63);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER and H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+ n=1; f=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) {
+ buf73[i][j][k]=0;
+ buf83[i][j][k]=0;
+ }
+ else {
+ buf73[i][j][k]=n++;
+ buf83[i][j][k]=f++;
+ }
+ }
+ }
+ }
+ write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73);
+ write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83);
+}
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_dset_reg_ref
+ *
+ * Purpose: write dataset region references
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define SPACE1_RANK 1
+#define SPACE1_DIM1 1
+#define SPACE2_RANK 2
+#define SPACE2_DIM1 10
+#define SPACE2_DIM2 10
+#define NPOINTS 10
+
+void make_dset_reg_ref(hid_t loc_id)
+{
+ hid_t dset1; /* Dataset ID */
+ hid_t dset2; /* Dereferenced dataset ID */
+ hid_t sid1; /* Dataspace ID #1 */
+ hid_t sid2; /* Dataspace ID #2 */
+ hsize_t dims1[] = {SPACE1_DIM1};
+ hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
+ hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
+ hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
+ hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
+ hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
+ hdset_reg_ref_t *wbuf; /* buffer to write to disk */
+ int *dwbuf; /* Buffer for writing numeric data to disk */
+ int i; /* counting variables */
+ herr_t ret; /* Generic return value */
+
+ /* Allocate write & read buffers */
+ wbuf=calloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1);
+ dwbuf=malloc(sizeof(int)*SPACE2_DIM1*SPACE2_DIM2);
+
+ /* Create dataspace for datasets */
+ sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
+
+ /* Create a dataset */
+ dset2=H5Dcreate(loc_id,"dsetreg",H5T_NATIVE_UCHAR,sid2,H5P_DEFAULT);
+
+ for(i=0; i<SPACE2_DIM1*SPACE2_DIM2; i++)
+ dwbuf[i]=i*3;
+
+ /* Write selection to disk */
+ ret=H5Dwrite(dset2,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,dwbuf);
+
+ /* Close Dataset */
+ ret = H5Dclose(dset2);
+
+ /* Create dataspace for the reference dataset */
+ sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
+
+ /* Create a dataset */
+ dset1=H5Dcreate(loc_id,"refreg",H5T_STD_REF_DSETREG,sid1,H5P_DEFAULT);
+
+ /* Create references */
+
+ /* Select 6x6 hyperslab for first reference */
+ start[0]=2; start[1]=2;
+ stride[0]=1; stride[1]=1;
+ count[0]=6; count[1]=6;
+ block[0]=1; block[1]=1;
+ ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
+
+ /* Store dataset region */
+ ret = H5Rcreate(&wbuf[0],loc_id,"dsetreg",H5R_DATASET_REGION,sid2);
+
+ /* Write selection to disk */
+ ret=H5Dwrite(dset1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf);
+
+ /* Close all objects */
+ ret = H5Sclose(sid1);
+ ret = H5Dclose(dset1);
+ ret = H5Sclose(sid2);
+
+ free(wbuf);
+ free(dwbuf);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: write_attr_in
+ *
+ * Purpose: write attributes in LOC_ID (dataset, group, named datatype)
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: November 12, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+void write_attr_in(hid_t loc_id,
+ const char* dset_name, /* for saving reference to dataset*/
+ hid_t fid, /* for reference create */
+ int make_diffs /* flag to modify data buffers */)
+{
+ /* Compound datatype */
+ typedef struct s_t
+ {
+ char a;
+ double b;
+ } s_t;
+
+ typedef enum
+ {
+ RED,
+ GREEN
+ } e_t;
+
+ hid_t attr_id;
+ hid_t space_id;
+ hid_t type_id;
+ herr_t status;
+ int val, i, j, k, n;
+ float f;
+
+ /* create 1D attributes with dimension [2], 2 elements */
+ hsize_t dims[1]={2};
+ char buf1[2][2]= {"ab","de"}; /* string */
+ char buf2[2]= {1,2}; /* bitfield, opaque */
+ s_t buf3[2]= {{1,2},{3,4}}; /* compound */
+ hobj_ref_t buf4[2]; /* reference */
+ e_t buf45[2]= {RED,RED}; /* enum */
+ hvl_t buf5[2]; /* vlen */
+ hsize_t dimarray[1]={3}; /* array dimension */
+ int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
+ int buf7[2]= {1,2}; /* integer */
+ float buf8[2]= {1,2}; /* float */
+
+ /* create 2D attributes with dimension [3][2], 6 elements */
+ hsize_t dims2[2]={3,2};
+ char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */
+ char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
+ s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
+ hobj_ref_t buf42[3][2]; /* reference */
+ e_t buf452[3][2]; /* enum */
+ hvl_t buf52[3][2]; /* vlen */
+ int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
+ int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
+ float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
+
+ /* create 3D attributes with dimension [4][3][2], 24 elements */
+ hsize_t dims3[3]={4,3,2};
+ char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
+ "rs","tu","vw","xz","AB","CD","EF","GH",
+ "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
+ char buf23[4][3][2]; /* bitfield, opaque */
+ s_t buf33[4][3][2]; /* compound */
+ hobj_ref_t buf43[4][3][2]; /* reference */
+ e_t buf453[4][3][2]; /* enum */
+ hvl_t buf53[4][3][2]; /* vlen */
+ int buf63[24][3]; /* array */
+ int buf73[4][3][2]; /* integer */
+ float buf83[4][3][2]; /* float */
+
+
+/*-------------------------------------------------------------------------
+ * 1D attributes
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ for (j=0; j<2; j++)
+ {
+ buf1[i][j]='z';
+ }
+ }
+ /*
+ buf1[2][2]= {"ab","de"};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+ Attribute: <string> and <string>
+ position string of </g1> string of </g1> difference
+ ------------------------------------------------------------
+[ 0 ] a z
+[ 0 ] b z
+[ 1 ] d z
+[ 1 ] e z
+ */
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ make_attr(loc_id,1,dims,"string",type_id,buf1);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ buf2[i]=buf2[1]=0;
+ }
+ /*
+ buf2[2]= {1,2};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+ Attribute: <bitfield> and <bitfield>
+ position bitfield of </g1> bitfield of </g1> difference
+ position opaque of </g1> opaque of </g1> difference
+------------------------------------------------------------
+[ 0 ] 1 0 1
+[ 1 ] 2 0 2
+ */
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ make_attr(loc_id,1,dims,"bitfield",type_id,buf2);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+
+ /*
+ buf2[2]= {1,2};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+ Attribute: <opaque> and <opaque>
+ position opaque of </g1> opaque of </g1> difference
+ position opaque of </g1> opaque of </g1> difference
+------------------------------------------------------------
+[ 0 ] 1 0 1
+[ 1 ] 2 0 2
+*/
+
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ make_attr(loc_id,1,dims,"opaque",type_id,buf2);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf3[i].a=0; buf3[i].b=0;
+ }
+ }
+
+ /*
+ buf3[2]= {{1,2},{3,4}};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+ Attribute: <compound> and <compound>
+ position compound of </g1> compound of </g1> difference
+ ------------------------------------------------------------
+ [ 0 ] 1 5 4
+ [ 0 ] 2 5 3
+ [ 1 ] 3 5 2
+ [ 1 ] 4 5 1
+ */
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ make_attr(loc_id,1,dims,"compound",type_id,buf3);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* object references ( H5R_OBJECT */
+ if (dset_name)
+ {
+ status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,-1);
+ status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1);
+ make_attr(loc_id,1,dims,"reference to object",H5T_STD_REF_OBJ,buf4);
+ }
+
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf45[i]=GREEN;
+ }
+ }
+ /*
+ buf45[2]= {RED,RED};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+ Attribute: <enum> and <enum>
+ position enum of </g1> enum of </g1> difference
+------------------------------------------------------------
+[ 0 ] RED GREEN
+[ 1 ] RED GREEN
+ */
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ make_attr(loc_id,1,dims,"enum",type_id,buf45);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+ /* Allocate and initialize VL dataset to write */
+
+ buf5[0].len = 1;
+ buf5[0].p = malloc( 1 * sizeof(int));
+ ((int *)buf5[0].p)[0]=1;
+ buf5[1].len = 2;
+ buf5[1].p = malloc( 2 * sizeof(int));
+ ((int *)buf5[1].p)[0]=2;
+ ((int *)buf5[1].p)[1]=3;
+
+ if (make_diffs)
+ {
+ ((int *)buf5[0].p)[0]=0;
+ ((int *)buf5[1].p)[0]=0;
+ ((int *)buf5[1].p)[1]=0;
+ }
+ /*
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+ position vlen of </g1> vlen of </g1> difference
+------------------------------------------------------------
+[ 0 ] 1 0 1
+[ 1 ] 2 0 2
+[ 1 ] 3 0 3
+ */
+
+ space_id = H5Screate_simple(1,dims,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ attr_id = H5Acreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT);
+ status = H5Awrite(attr_id,type_id,buf5);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5);
+ assert(status>=0);
+ status = H5Aclose(attr_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ for (j=0; j<3; j++)
+ {
+ buf6[i][j]=0;
+ }
+ }
+ /*
+ buf6[2][3]= {{1,2,3},{4,5,6}};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+ Attribute: <array> and <array>
+position array of </g1> array of </g1> difference
+------------------------------------------------------------
+[ 0 ] 1 0 1
+[ 0 ] 2 0 2
+[ 0 ] 3 0 3
+[ 1 ] 4 0 4
+[ 1 ] 5 0 5
+[ 1 ] 6 0 6
+ */
+ type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL);
+ make_attr(loc_id,1,dims,"array",type_id,buf6);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER and H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ for (i=0; i<2; i++)
+ {
+ buf7[i]=0;
+ buf8[i]=0;
+ }
+ }
+ /*
+ buf7[2]= {1,2};
+ buf8[2]= {1,2};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+ position integer of </g1> integer of </g1> difference
+ ------------------------------------------------------------
+ [ 0 ] 1 0 1
+ [ 1 ] 2 0 2
+ position float of </g1> float of </g1> difference
+ ------------------------------------------------------------
+ [ 0 ] 1 0 1
+ [ 1 ] 2 0 2
+ */
+ make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7);
+ make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8);
+
+
+/*-------------------------------------------------------------------------
+ * 2D attributes
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+ if (make_diffs)
+ {
+ memset(buf12, 'z', sizeof buf12);
+ }
+
+ /*
+ buf12[6][2]= {"ab","cd","ef","gh","ij","kl"};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Attribute: <string2D> and <string2D>
+ position string2D of </g1> string2D of </g1> difference
+ ------------------------------------------------------------
+[ 0 0 ] a z
+[ 0 0 ] b z
+[ 0 1 ] c z
+[ 0 1 ] d z
+[ 1 0 ] e z
+[ 1 0 ] f z
+[ 1 1 ] g z
+[ 1 1 ] h z
+[ 2 0 ] i z
+[ 2 0 ] j z
+[ 2 1 ] k z
+[ 2 1 ] l z
+ */
+
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ make_attr(loc_id,2,dims2,"string2D",type_id,buf12);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf22,0,sizeof buf22);
+ }
+
+ /*
+ buf22[3][2]= {{1,2},{3,4},{5,6}};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Attribute: <bitfield2D> and <bitfield2D>
+ position bitfield2D of </g1> bitfield2D of </g1> difference
+------------------------------------------------------------
+[ 0 0 ] 1 0 1
+[ 0 1 ] 2 0 2
+[ 1 0 ] 3 0 3
+[ 1 1 ] 4 0 4
+[ 2 0 ] 5 0 5
+[ 2 1 ] 6 0 6
+ */
+
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ make_attr(loc_id,2,dims2,"bitfield2D",type_id,buf22);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+
+ /*
+ buf22[3][2]= {{1,2},{3,4},{5,6}};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Attribute: <opaque2D> and <opaque2D>
+ position opaque2D of </g1> opaque2D of </g1> difference
+------------------------------------------------------------
+[ 0 0 ] 1 0 1
+[ 0 1 ] 2 0 2
+[ 1 0 ] 3 0 3
+[ 1 1 ] 4 0 4
+[ 2 0 ] 5 0 5
+[ 2 1 ] 6 0 6
+ */
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ make_attr(loc_id,2,dims2,"opaque2D",type_id,buf22);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+ if (make_diffs)
+ {
+ memset(buf32,0,sizeof buf32);
+ }
+
+ /*
+ buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Attribute: <opaque2D> and <opaque2D>
+ position opaque2D of </g1> opaque2D of </g1> difference
+------------------------------------------------------------
+[ 0 0 ] 1 0 1
+[ 0 1 ] 2 0 2
+[ 1 0 ] 3 0 3
+[ 1 1 ] 4 0 4
+[ 2 0 ] 5 0 5
+[ 2 1 ] 6 0 6
+ */
+
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ make_attr(loc_id,2,dims2,"compound2D",type_id,buf32);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* Create references to dataset */
+ if (dset_name)
+ {
+ for (i = 0; i < 3; i++) {
+ for (j = 0; j < 2; j++) {
+ status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,-1);
+ }
+ }
+ make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42);
+ }
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+ for (i=0; i<3; i++)
+ for (j=0; j<2; j++)
+ {
+ if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED;
+ }
+
+/*
+Attribute: <enum2D> and <enum2D>
+position enum2D of </g1> enum2D of </g1> difference
+------------------------------------------------------------
+[ 0 0 ] RED GREEN
+[ 0 1 ] RED GREEN
+[ 1 0 ] RED GREEN
+[ 1 1 ] RED GREEN
+[ 2 0 ] RED GREEN
+[ 2 1 ] RED GREEN
+*/
+
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ make_attr(loc_id,2,dims2,"enum2D",type_id,buf452);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+ /* Allocate and initialize VL dataset to write */
+ n=0;
+ for (i = 0; i < 3; i++) {
+ for (j = 0; j < 2; j++) {
+ int l;
+ buf52[i][j].p = malloc((i + 1) * sizeof(int));
+ buf52[i][j].len = i + 1;
+ for (l = 0; l < i + 1; l++)
+ if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
+ else ((int *)buf52[i][j].p)[l] = n++;
+ }
+ }
+
+ /*
+ position vlen2D of </g1> vlen2D of </g1> difference
+------------------------------------------------------------
+[ 0 1 ] 1 0 1
+[ 1 0 ] 2 0 2
+[ 1 0 ] 3 0 3
+[ 1 1 ] 4 0 4
+[ 1 1 ] 5 0 5
+[ 2 0 ] 6 0 6
+[ 2 0 ] 7 0 7
+[ 2 0 ] 8 0 8
+[ 2 1 ] 9 0 9
+[ 2 1 ] 10 0 10
+[ 2 1 ] 11 0 11
+*/
+
+ space_id = H5Screate_simple(2,dims2,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ attr_id = H5Acreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT);
+ status = H5Awrite(attr_id,type_id,buf52);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52);
+ assert(status>=0);
+ status = H5Aclose(attr_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf62,0,sizeof buf62);
+ }
+ /*
+ buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}};
+ $h5diff file7.h5 file6.h5 g1 g1 -v
+ Group: </g1> and </g1>
+Attribute: <array2D> and <array2D>
+position array2D of </g1> array2D of </g1> difference
+------------------------------------------------------------
+[ 0 0 ] 1 0 1
+[ 0 0 ] 2 0 2
+[ 0 0 ] 3 0 3
+[ 0 1 ] 4 0 4
+[ 0 1 ] 5 0 5
+[ 0 1 ] 6 0 6
+[ 1 0 ] 7 0 7
+[ 1 0 ] 8 0 8
+[ 1 0 ] 9 0 9
+[ 1 1 ] 10 0 10
+[ 1 1 ] 11 0 11
+[ 1 1 ] 12 0 12
+[ 2 0 ] 13 0 13
+[ 2 0 ] 14 0 14
+[ 2 0 ] 15 0 15
+[ 2 1 ] 16 0 16
+[ 2 1 ] 17 0 17
+[ 2 1 ] 18 0 18
+ */
+ type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL);
+ make_attr(loc_id,2,dims2,"array2D",type_id,buf62);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER and H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf72,0,sizeof buf72);
+ memset(buf82,0,sizeof buf82);
+ }
+/*
+Attribute: <integer2D> and <integer2D>
+position integer2D of </g1> integer2D of </g1> difference
+------------------------------------------------------------
+[ 0 0 ] 1 0 1
+[ 0 1 ] 2 0 2
+[ 1 0 ] 3 0 3
+[ 1 1 ] 4 0 4
+[ 2 0 ] 5 0 5
+[ 2 1 ] 6 0 6
+6 differences found
+Attribute: <float2D> and <float2D>
+position float2D of </g1> float2D of </g1> difference
+------------------------------------------------------------
+[ 0 0 ] 1 0 1
+[ 0 1 ] 2 0 2
+[ 1 0 ] 3 0 3
+[ 1 1 ] 4 0 4
+[ 2 0 ] 5 0 5
+[ 2 1 ] 6 0 6
+*/
+
+ make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72);
+ make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82);
+
+
+/*-------------------------------------------------------------------------
+ * 3D attributes
+ *-------------------------------------------------------------------------
+ */
+
+/*-------------------------------------------------------------------------
+ * H5T_STRING
+ *-------------------------------------------------------------------------
+ */
+
+ if (make_diffs)
+ {
+ memset(buf13,'z',sizeof buf13);
+ }
+
+ /*
+ buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
+ "rs","tu","vw","xz","AB","CD","EF","GH",
+ "IJ","KL","MN","PQ","RS","TU","VW","XZ"};
+
+Attribute: <string3D> and <string3D>
+position string3D of </g1> string3D of </g1> difference
+------------------------------------------------------------
+[ 0 0 0 ] a z
+[ 0 0 0 ] b z
+[ 0 0 1 ] c z
+[ 0 0 1 ] d z
+[ 0 1 0 ] e z
+[ 0 1 0 ] f z
+[ 0 1 1 ] g z
+[ 0 1 1 ] h z
+[ 0 2 0 ] i z
+[ 0 2 0 ] j z
+[ 0 2 1 ] k z
+[ 0 2 1 ] l z
+[ 1 0 0 ] m z
+[ 1 0 0 ] n z
+[ 1 0 1 ] p z
+[ 1 0 1 ] q z
+[ 1 1 0 ] r z
+[ 1 1 0 ] s z
+[ 1 1 1 ] t z
+[ 1 1 1 ] u z
+[ 1 2 0 ] v z
+[ 1 2 0 ] w z
+[ 1 2 1 ] x z
+[ 2 0 0 ] A z
+[ 2 0 0 ] B z
+[ 2 0 1 ] C z
+[ 2 0 1 ] D z
+[ 2 1 0 ] E z
+[ 2 1 0 ] F z
+[ 2 1 1 ] G z
+[ 2 1 1 ] H z
+[ 2 2 0 ] I z
+[ 2 2 0 ] J z
+[ 2 2 1 ] K z
+[ 2 2 1 ] L z
+[ 3 0 0 ] M z
+[ 3 0 0 ] N z
+[ 3 0 1 ] P z
+[ 3 0 1 ] Q z
+[ 3 1 0 ] R z
+[ 3 1 0 ] S z
+[ 3 1 1 ] T z
+[ 3 1 1 ] U z
+[ 3 2 0 ] V z
+[ 3 2 0 ] W z
+[ 3 2 1 ] X z
+[ 3 2 1 ] Z z
+ */
+
+ type_id = H5Tcopy(H5T_C_S1);
+ status = H5Tset_size(type_id, 2);
+ make_attr(loc_id,3,dims3,"string3D",type_id,buf13);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_BITFIELD
+ *-------------------------------------------------------------------------
+ */
+
+ n=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) buf23[i][j][k]=0;
+ else buf23[i][j][k]=n++;
+ }
+ }
+ }
+
+/*
+position bitfield3D of </g1> bitfield3D of </g1> difference
+------------------------------------------------------------
+[ 0 0 0 ] 1 0 1
+[ 0 0 1 ] 2 0 2
+[ 0 1 0 ] 3 0 3
+[ 0 1 1 ] 4 0 4
+[ 0 2 0 ] 5 0 5
+[ 0 2 1 ] 6 0 6
+[ 1 0 0 ] 7 0 7
+[ 1 0 1 ] 8 0 8
+[ 1 1 0 ] 9 0 9
+[ 1 1 1 ] 10 0 10
+[ 1 2 0 ] 11 0 11
+[ 1 2 1 ] 12 0 12
+[ 2 0 0 ] 13 0 13
+[ 2 0 1 ] 14 0 14
+[ 2 1 0 ] 15 0 15
+[ 2 1 1 ] 16 0 16
+[ 2 2 0 ] 17 0 17
+[ 2 2 1 ] 18 0 18
+[ 3 0 0 ] 19 0 19
+[ 3 0 1 ] 20 0 20
+[ 3 1 0 ] 21 0 21
+[ 3 1 1 ] 22 0 22
+[ 3 2 0 ] 23 0 23
+[ 3 2 1 ] 24 0 24
+*/
+
+ type_id = H5Tcopy(H5T_STD_B8LE);
+ make_attr(loc_id,3,dims3,"bitfield3D",type_id,buf23);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_OPAQUE
+ *-------------------------------------------------------------------------
+ */
+ type_id = H5Tcreate(H5T_OPAQUE, 1);
+ status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
+ make_attr(loc_id,3,dims3,"opaque3D",type_id,buf23);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_COMPOUND
+ *-------------------------------------------------------------------------
+ */
+
+ n=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) {
+ buf33[i][j][k].a=0;
+ buf33[i][j][k].b=0;
+ }
+ else {
+ buf33[i][j][k].a=n++;
+ buf33[i][j][k].b=n++;
+ }
+ }
+ }
+ }
+/*position compound3D of </g1> compound3D of </g1> difference
+------------------------------------------------------------
+[ 0 0 0 ] 1 0 1
+[ 0 0 0 ] 2 0 2
+[ 0 0 1 ] 3 0 3
+[ 0 0 1 ] 4 0 4
+[ 0 1 0 ] 5 0 5
+[ 0 1 0 ] 6 0 6
+[ 0 1 1 ] 7 0 7
+[ 0 1 1 ] 8 0 8
+[ 0 2 0 ] 9 0 9
+[ 0 2 0 ] 10 0 10
+[ 0 2 1 ] 11 0 11
+[ 0 2 1 ] 12 0 12
+[ 1 0 0 ] 13 0 13
+[ 1 0 0 ] 14 0 14
+[ 1 0 1 ] 15 0 15
+[ 1 0 1 ] 16 0 16
+[ 1 1 0 ] 17 0 17
+[ 1 1 0 ] 18 0 18
+[ 1 1 1 ] 19 0 19
+[ 1 1 1 ] 20 0 20
+[ 1 2 0 ] 21 0 21
+[ 1 2 0 ] 22 0 22
+[ 1 2 1 ] 23 0 23
+[ 1 2 1 ] 24 0 24
+[ 2 0 0 ] 25 0 25
+[ 2 0 0 ] 26 0 26
+[ 2 0 1 ] 27 0 27
+[ 2 0 1 ] 28 0 28
+[ 2 1 0 ] 29 0 29
+[ 2 1 0 ] 30 0 30
+[ 2 1 1 ] 31 0 31
+[ 2 1 1 ] 32 0 32
+[ 2 2 0 ] 33 0 33
+[ 2 2 0 ] 34 0 34
+[ 2 2 1 ] 35 0 35
+[ 2 2 1 ] 36 0 36
+[ 3 0 0 ] 37 0 37
+[ 3 0 0 ] 38 0 38
+[ 3 0 1 ] 39 0 39
+[ 3 0 1 ] 40 0 40
+[ 3 1 0 ] 41 0 41
+[ 3 1 0 ] 42 0 42
+[ 3 1 1 ] 43 0 43
+[ 3 1 1 ] 44 0 44
+[ 3 2 0 ] 45 0 45
+[ 3 2 0 ] 46 0 46
+[ 3 2 1 ] 47 0 47
+[ 3 2 1 ] 48 0 48
+*/
+
+
+
+ type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
+ H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
+ H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
+ make_attr(loc_id,3,dims3,"compound3D",type_id,buf33);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_REFERENCE
+ *-------------------------------------------------------------------------
+ */
+ /* Create references to dataset */
+ if (dset_name)
+ {
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++)
+ status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,-1);
+ }
+ }
+ make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43);
+ }
+
+/*-------------------------------------------------------------------------
+ * H5T_ENUM
+ *-------------------------------------------------------------------------
+ */
+
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN;
+ }
+ }
+ }
+
+/*
+position enum3D of </g1> enum3D of </g1> difference
+------------------------------------------------------------
+[ 0 0 0 ] GREEN RED
+[ 0 0 1 ] GREEN RED
+[ 0 1 0 ] GREEN RED
+[ 0 1 1 ] GREEN RED
+[ 0 2 0 ] GREEN RED
+[ 0 2 1 ] GREEN RED
+[ 1 0 0 ] GREEN RED
+[ 1 0 1 ] GREEN RED
+[ 1 1 0 ] GREEN RED
+[ 1 1 1 ] GREEN RED
+[ 1 2 0 ] GREEN RED
+[ 1 2 1 ] GREEN RED
+[ 2 0 0 ] GREEN RED
+[ 2 0 1 ] GREEN RED
+[ 2 1 0 ] GREEN RED
+[ 2 1 1 ] GREEN RED
+[ 2 2 0 ] GREEN RED
+[ 2 2 1 ] GREEN RED
+[ 3 0 0 ] GREEN RED
+[ 3 0 1 ] GREEN RED
+[ 3 1 0 ] GREEN RED
+[ 3 1 1 ] GREEN RED
+[ 3 2 0 ] GREEN RED
+[ 3 2 1 ] GREEN RED
+*/
+
+
+ type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
+ H5Tenum_insert(type_id, "RED", (val = 0, &val));
+ H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
+ make_attr(loc_id,3,dims3,"enum3D",type_id,buf453);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_VLEN
+ *-------------------------------------------------------------------------
+ */
+
+ /* Allocate and initialize VL dataset to write */
+ n=0;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ int l;
+ buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
+ buf53[i][j][k].len = i + 1;
+ for (l = 0; l < i + 1; l++)
+ if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0;
+ else ((int *)buf53[i][j][k].p)[l] = n++;
+ }
+ }
+ }
+/*
+position vlen3D of </g1> vlen3D of </g1> difference
+------------------------------------------------------------
+[ 0 0 1 ] 1 0 1
+[ 0 1 0 ] 2 0 2
+[ 0 1 1 ] 3 0 3
+[ 0 2 0 ] 4 0 4
+[ 0 2 1 ] 5 0 5
+[ 1 0 0 ] 6 0 6
+[ 1 0 0 ] 7 0 7
+[ 1 0 1 ] 8 0 8
+[ 1 0 1 ] 9 0 9
+[ 1 1 0 ] 10 0 10
+etc
+*/
+ space_id = H5Screate_simple(3,dims3,NULL);
+ type_id = H5Tvlen_create(H5T_NATIVE_INT);
+ attr_id = H5Acreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT);
+ status = H5Awrite(attr_id,type_id,buf53);
+ assert(status>=0);
+ status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53);
+ assert(status>=0);
+ status = H5Aclose(attr_id);
+ status = H5Tclose(type_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_ARRAY
+ *-------------------------------------------------------------------------
+ */
+ n=1;
+ for (i = 0; i < 24; i++) {
+ for (j = 0; j < (int)dimarray[0]; j++) {
+ if (make_diffs) buf63[i][j]=0;
+ else buf63[i][j]=n++;
+ }
+ }
+ /*
+ position array3D of </g1> array3D of </g1> difference
+------------------------------------------------------------
+[ 0 0 0 ] 1 0 1
+[ 0 0 0 ] 2 0 2
+[ 0 0 0 ] 3 0 3
+[ 0 0 1 ] 4 0 4
+[ 0 0 1 ] 5 0 5
+[ 0 0 1 ] 6 0 6
+[ 0 1 0 ] 7 0 7
+etc
+*/
+
+ type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL);
+ make_attr(loc_id,3,dims3,"array3D",type_id,buf63);
+ status = H5Tclose(type_id);
+
+/*-------------------------------------------------------------------------
+ * H5T_INTEGER and H5T_FLOAT
+ *-------------------------------------------------------------------------
+ */
+ n=1; f=1;
+ for (i = 0; i < 4; i++) {
+ for (j = 0; j < 3; j++) {
+ for (k = 0; k < 2; k++) {
+ if (make_diffs) {
+ buf73[i][j][k]=0;
+ buf83[i][j][k]=0;
+ }
+ else {
+ buf73[i][j][k]=n++;
+ buf83[i][j][k]=f++;
+ }
+ }
+ }
+ }
+
+ /*
+ position integer3D of </g1> integer3D of </g1> difference
+------------------------------------------------------------
+[ 0 0 0 ] 1 0 1
+[ 0 0 1 ] 2 0 2
+[ 0 1 0 ] 3 0 3
+[ 0 1 1 ] 4 0 4
+[ 0 2 0 ] 5 0 5
+[ 0 2 1 ] 6 0 6
+[ 1 0 0 ] 7 0 7
+[ 1 0 1 ] 8 0 8
+[ 1 1 0 ] 9 0 9
+[ 1 1 1 ] 10 0 10
+etc
+*/
+ make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73);
+ make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83);
+}
+
+
+
+/*-------------------------------------------------------------------------
+ * Function: make_dset
+ *
+ * Purpose: utility function to create and write a dataset in LOC_ID
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: November 12, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+int make_dset(hid_t loc_id,
+ const char *name,
+ hid_t sid,
+ hid_t dcpl,
+ void *buf)
+{
+ hid_t dsid;
+
+ /* create the dataset */
+ if((dsid = H5Dcreate (loc_id,name,H5T_NATIVE_INT,sid,dcpl))<0)
+ return -1;
+
+ /* write */
+ if(H5Dwrite(dsid,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ goto out;
+
+ /* close */
+ if(H5Dclose(dsid)<0)
+ return -1;
+
+ return 0;
+ out:
+ H5E_BEGIN_TRY {
+ H5Dclose(dsid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: write_dset
+ *
+ * Purpose: utility function to create and write a dataset in LOC_ID
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: November 12, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int write_dset( hid_t loc_id,
+ int rank,
+ hsize_t *dims,
+ const char *dset_name,
+ hid_t type_id,
+ void *buf )
+{
+ hid_t dset_id;
+ hid_t space_id;
+
+ /* Create a buf space */
+ if ((space_id = H5Screate_simple(rank,dims,NULL))<0)
+ return -1;
+
+ /* Create a dataset */
+ if ((dset_id = H5Dcreate(loc_id,dset_name,type_id,space_id,H5P_DEFAULT))<0)
+ return -1;
+
+ /* Write the buf */
+ if ( buf )
+ if (H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0)
+ return -1;
+
+ /* Close */
+ if (H5Dclose(dset_id)<0)
+ return -1;
+ if (H5Sclose(space_id)<0)
+ return -1;
+
+ return 0;
+
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: write_attr
+ *
+ * Purpose: utility function to write an attribute in LOC_ID
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: November 12, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int make_attr(hid_t loc_id,
+ int rank,
+ hsize_t *dims,
+ const char *attr_name,
+ hid_t type_id,
+ void *buf)
+{
+ hid_t attr_id;
+ hid_t space_id;
+
+ /* create a space */
+ if ((space_id = H5Screate_simple(rank,dims,NULL))<0)
+ return -1;
+
+ /* create the attribute */
+ if ((attr_id = H5Acreate(loc_id,attr_name,type_id,space_id,H5P_DEFAULT))<0)
+ goto out;
+
+ /* write the buffer */
+ if ( buf )
+ {
+ if (H5Awrite(attr_id,type_id,buf)<0)
+ goto out;
+ }
+
+ /* close */
+ H5Aclose(attr_id);
+ H5Sclose(space_id);
+ return 0;
+
+out:
+ H5E_BEGIN_TRY {
+ H5Aclose(attr_id);
+ H5Sclose(space_id);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+
diff --git a/tools/h5repack/testh5repack.h b/tools/h5repack/testh5repack.h deleted file mode 100644 index dab2a8b..0000000 --- a/tools/h5repack/testh5repack.h +++ /dev/null @@ -1,99 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - - -#ifndef TESTH5REPACK_H__ -#define TESTH5REPACK_H__ - -/*------------------------------------------------------------------------- - * tests - *------------------------------------------------------------------------- - */ - -#define FNAME0 "test0.h5" -#define FNAME0OUT "test0out.h5" -#define FNAME1 "test1.h5" -#define FNAME1DST "test1_dst.h5" -#define FNAME1OUT "test1out.h5" -#define FNAME2 "test2.h5" -#define FNAME2OUT "test2out.h5" -#define FNAME3 "test3.h5" -#define FNAME3OUT "test3out.h5" -#define FNAME4 "test4.h5" -#define FNAME4OUT "test4out.h5" -#define FNAME5 "test5.h5" -#define FNAME5OUT "test5out.h5" -#define FNAME6 "test6.h5" -#define FNAME7 "test_szip.h5" -#define FNAME8 "test_deflate.h5" -#define FNAME9 "test_shuffle.h5" -#define FNAME10 "test_fletcher32.h5" -#define FNAME11 "test_all.h5" -#define FNAME7OUT "test_szipout.h5" -#define FNAME8OUT "test_deflateout.h5" -#define FNAME9OUT "test_shuffleout.h5" -#define FNAME10OUT "test_fletcher32out.h5" -#define FNAME11OUT "test_allout.h5" -#define FNAME12 "test_nbit.h5" -#define FNAME12OUT "test_nbitout.h5" -#define FNAME13 "test_scaleoffset.h5" -#define FNAME13OUT "test_scaleoffsetout.h5" -#define FNAME14 "test_big.h5" -#define FNAME14OUT "test_bigout.h5" - -int make_testfiles(void); - -int write_dset( hid_t loc_id, - int rank, - hsize_t *dims, - const char *dset_name, - hid_t type_id, - void *buf ); -int write_attr(hid_t loc_id, - int rank, - hsize_t *dims, - const char *attr_name, - hid_t type_id, - void *buf); -void write_attr_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t fid, /* for reference create */ - int make_diffs /* flag to modify data buffers */); -void write_dset_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t file_id, - int make_diffs /* flag to modify data buffers */); - - - -/*------------------------------------------------------------------------- - * tests utils - *------------------------------------------------------------------------- - */ -int make_dset(hid_t loc_id, - const char *name, - hid_t sid, - hid_t dcpl, - void *buf); - -int make_attr(hid_t loc_id, - int rank, - hsize_t *dims, - const char *attr_name, - hid_t type_id, - void *buf); - - -#endif /* TESTH5REPACK_H__ */ - diff --git a/tools/h5repack/testh5repack_attr.c b/tools/h5repack/testh5repack_attr.c deleted file mode 100644 index 5064aa1..0000000 --- a/tools/h5repack/testh5repack_attr.c +++ /dev/null @@ -1,1033 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "hdf5.h" -#include "h5test.h" -#include "h5repack.h" -#include "testh5repack.h" - -/*------------------------------------------------------------------------- - * Function: write_attr_in - * - * Purpose: write attributes in LOC_ID (dataset, group, named datatype) - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ - - -void write_attr_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t fid, /* for reference create */ - int make_diffs /* flag to modify data buffers */) -{ - /* Compound datatype */ - typedef struct s_t - { - char a; - double b; - } s_t; - - typedef enum - { - RED, - GREEN - } e_t; - - hid_t attr_id; - hid_t space_id; - hid_t type_id; - herr_t status; - int val, i, j, k, n; - float f; - - /* create 1D attributes with dimension [2], 2 elements */ - hsize_t dims[1]={2}; - char buf1[2][2]= {"ab","de"}; /* string */ - char buf2[2]= {1,2}; /* bitfield, opaque */ - s_t buf3[2]= {{1,2},{3,4}}; /* compound */ - hobj_ref_t buf4[2]; /* reference */ - e_t buf45[2]= {RED,RED}; /* enum */ - hvl_t buf5[2]; /* vlen */ - hsize_t dimarray[1]={3}; /* array dimension */ - int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int buf7[2]= {1,2}; /* integer */ - float buf8[2]= {1,2}; /* float */ - - /* create 2D attributes with dimension [3][2], 6 elements */ - hsize_t dims2[2]={3,2}; - char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */ - char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ - s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ - hobj_ref_t buf42[3][2]; /* reference */ - e_t buf452[3][2]; /* enum */ - hvl_t buf52[3][2]; /* vlen */ - int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ - int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ - float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ - - /* create 3D attributes with dimension [4][3][2], 24 elements */ - hsize_t dims3[3]={4,3,2}; - char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ - char buf23[4][3][2]; /* bitfield, opaque */ - s_t buf33[4][3][2]; /* compound */ - hobj_ref_t buf43[4][3][2]; /* reference */ - e_t buf453[4][3][2]; /* enum */ - hvl_t buf53[4][3][2]; /* vlen */ - int buf63[24][3]; /* array */ - int buf73[4][3][2]; /* integer */ - float buf83[4][3][2]; /* float */ - - -/*------------------------------------------------------------------------- - * 1D attributes - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<2; j++) - { - buf1[i][j]='z'; - } - } - /* - buf1[2][2]= {"ab","de"}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <string> and <string> - position string of </g1> string of </g1> difference - ------------------------------------------------------------ -[ 0 ] a z -[ 0 ] b z -[ 1 ] d z -[ 1 ] e z - */ - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - make_attr(loc_id,1,dims,"string",type_id,buf1); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - buf2[i]=buf2[1]=0; - } - /* - buf2[2]= {1,2}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <bitfield> and <bitfield> - position bitfield of </g1> bitfield of </g1> difference - position opaque of </g1> opaque of </g1> difference ------------------------------------------------------------- -[ 0 ] 1 0 1 -[ 1 ] 2 0 2 - */ - - type_id = H5Tcopy(H5T_STD_B8LE); - make_attr(loc_id,1,dims,"bitfield",type_id,buf2); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - - /* - buf2[2]= {1,2}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <opaque> and <opaque> - position opaque of </g1> opaque of </g1> difference - position opaque of </g1> opaque of </g1> difference ------------------------------------------------------------- -[ 0 ] 1 0 1 -[ 1 ] 2 0 2 -*/ - - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - make_attr(loc_id,1,dims,"opaque",type_id,buf2); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf3[i].a=0; buf3[i].b=0; - } - } - - /* - buf3[2]= {{1,2},{3,4}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <compound> and <compound> - position compound of </g1> compound of </g1> difference - ------------------------------------------------------------ - [ 0 ] 1 5 4 - [ 0 ] 2 5 3 - [ 1 ] 3 5 2 - [ 1 ] 4 5 1 - */ - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - make_attr(loc_id,1,dims,"compound",type_id,buf3); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* object references ( H5R_OBJECT */ - if (dset_name) - { - status=H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,-1); - status=H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,-1); - make_attr(loc_id,1,dims,"reference to object",H5T_STD_REF_OBJ,buf4); - } - - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf45[i]=GREEN; - } - } - /* - buf45[2]= {RED,RED}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <enum> and <enum> - position enum of </g1> enum of </g1> difference ------------------------------------------------------------- -[ 0 ] RED GREEN -[ 1 ] RED GREEN - */ - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - make_attr(loc_id,1,dims,"enum",type_id,buf45); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - - buf5[0].len = 1; - buf5[0].p = malloc( 1 * sizeof(int)); - ((int *)buf5[0].p)[0]=1; - buf5[1].len = 2; - buf5[1].p = malloc( 2 * sizeof(int)); - ((int *)buf5[1].p)[0]=2; - ((int *)buf5[1].p)[1]=3; - - if (make_diffs) - { - ((int *)buf5[0].p)[0]=0; - ((int *)buf5[1].p)[0]=0; - ((int *)buf5[1].p)[1]=0; - } - /* - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - position vlen of </g1> vlen of </g1> difference ------------------------------------------------------------- -[ 0 ] 1 0 1 -[ 1 ] 2 0 2 -[ 1 ] 3 0 3 - */ - - space_id = H5Screate_simple(1,dims,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - attr_id = H5Acreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT); - status = H5Awrite(attr_id,type_id,buf5); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5); - assert(status>=0); - status = H5Aclose(attr_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<3; j++) - { - buf6[i][j]=0; - } - } - /* - buf6[2][3]= {{1,2,3},{4,5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - Attribute: <array> and <array> -position array of </g1> array of </g1> difference ------------------------------------------------------------- -[ 0 ] 1 0 1 -[ 0 ] 2 0 2 -[ 0 ] 3 0 3 -[ 1 ] 4 0 4 -[ 1 ] 5 0 5 -[ 1 ] 6 0 6 - */ - type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL); - make_attr(loc_id,1,dims,"array",type_id,buf6); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf7[i]=0; - buf8[i]=0; - } - } - /* - buf7[2]= {1,2}; - buf8[2]= {1,2}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> - position integer of </g1> integer of </g1> difference - ------------------------------------------------------------ - [ 0 ] 1 0 1 - [ 1 ] 2 0 2 - position float of </g1> float of </g1> difference - ------------------------------------------------------------ - [ 0 ] 1 0 1 - [ 1 ] 2 0 2 - */ - make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); - make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); - - -/*------------------------------------------------------------------------- - * 2D attributes - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - if (make_diffs) - { - memset(buf12, 'z', sizeof buf12); - } - - /* - buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: <string2D> and <string2D> - position string2D of </g1> string2D of </g1> difference - ------------------------------------------------------------ -[ 0 0 ] a z -[ 0 0 ] b z -[ 0 1 ] c z -[ 0 1 ] d z -[ 1 0 ] e z -[ 1 0 ] f z -[ 1 1 ] g z -[ 1 1 ] h z -[ 2 0 ] i z -[ 2 0 ] j z -[ 2 1 ] k z -[ 2 1 ] l z - */ - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - make_attr(loc_id,2,dims2,"string2D",type_id,buf12); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf22,0,sizeof buf22); - } - - /* - buf22[3][2]= {{1,2},{3,4},{5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: <bitfield2D> and <bitfield2D> - position bitfield2D of </g1> bitfield2D of </g1> difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 - */ - - - type_id = H5Tcopy(H5T_STD_B8LE); - make_attr(loc_id,2,dims2,"bitfield2D",type_id,buf22); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - - /* - buf22[3][2]= {{1,2},{3,4},{5,6}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: <opaque2D> and <opaque2D> - position opaque2D of </g1> opaque2D of </g1> difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 - */ - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - make_attr(loc_id,2,dims2,"opaque2D",type_id,buf22); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - if (make_diffs) - { - memset(buf32,0,sizeof buf32); - } - - /* - buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Attribute: <opaque2D> and <opaque2D> - position opaque2D of </g1> opaque2D of </g1> difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 - */ - - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - make_attr(loc_id,2,dims2,"compound2D",type_id,buf32); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - status=H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,-1); - } - } - make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - for (i=0; i<3; i++) - for (j=0; j<2; j++) - { - if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED; - } - -/* -Attribute: <enum2D> and <enum2D> -position enum2D of </g1> enum2D of </g1> difference ------------------------------------------------------------- -[ 0 0 ] RED GREEN -[ 0 1 ] RED GREEN -[ 1 0 ] RED GREEN -[ 1 1 ] RED GREEN -[ 2 0 ] RED GREEN -[ 2 1 ] RED GREEN -*/ - - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - make_attr(loc_id,2,dims2,"enum2D",type_id,buf452); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - int l; - buf52[i][j].p = malloc((i + 1) * sizeof(int)); - buf52[i][j].len = i + 1; - for (l = 0; l < i + 1; l++) - if (make_diffs)((int *)buf52[i][j].p)[l] = 0; - else ((int *)buf52[i][j].p)[l] = n++; - } - } - - /* - position vlen2D of </g1> vlen2D of </g1> difference ------------------------------------------------------------- -[ 0 1 ] 1 0 1 -[ 1 0 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 1 1 ] 5 0 5 -[ 2 0 ] 6 0 6 -[ 2 0 ] 7 0 7 -[ 2 0 ] 8 0 8 -[ 2 1 ] 9 0 9 -[ 2 1 ] 10 0 10 -[ 2 1 ] 11 0 11 -*/ - - space_id = H5Screate_simple(2,dims2,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - attr_id = H5Acreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT); - status = H5Awrite(attr_id,type_id,buf52); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52); - assert(status>=0); - status = H5Aclose(attr_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf62,0,sizeof buf62); - } - /* - buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; - $h5diff file7.h5 file6.h5 g1 g1 -v - Group: </g1> and </g1> -Attribute: <array2D> and <array2D> -position array2D of </g1> array2D of </g1> difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 0 ] 2 0 2 -[ 0 0 ] 3 0 3 -[ 0 1 ] 4 0 4 -[ 0 1 ] 5 0 5 -[ 0 1 ] 6 0 6 -[ 1 0 ] 7 0 7 -[ 1 0 ] 8 0 8 -[ 1 0 ] 9 0 9 -[ 1 1 ] 10 0 10 -[ 1 1 ] 11 0 11 -[ 1 1 ] 12 0 12 -[ 2 0 ] 13 0 13 -[ 2 0 ] 14 0 14 -[ 2 0 ] 15 0 15 -[ 2 1 ] 16 0 16 -[ 2 1 ] 17 0 17 -[ 2 1 ] 18 0 18 - */ - type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL); - make_attr(loc_id,2,dims2,"array2D",type_id,buf62); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf72,0,sizeof buf72); - memset(buf82,0,sizeof buf82); - } -/* -Attribute: <integer2D> and <integer2D> -position integer2D of </g1> integer2D of </g1> difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 -6 differences found -Attribute: <float2D> and <float2D> -position float2D of </g1> float2D of </g1> difference ------------------------------------------------------------- -[ 0 0 ] 1 0 1 -[ 0 1 ] 2 0 2 -[ 1 0 ] 3 0 3 -[ 1 1 ] 4 0 4 -[ 2 0 ] 5 0 5 -[ 2 1 ] 6 0 6 -*/ - - make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72); - make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); - - -/*------------------------------------------------------------------------- - * 3D attributes - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf13,'z',sizeof buf13); - } - - /* - buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; - -Attribute: <string3D> and <string3D> -position string3D of </g1> string3D of </g1> difference ------------------------------------------------------------- -[ 0 0 0 ] a z -[ 0 0 0 ] b z -[ 0 0 1 ] c z -[ 0 0 1 ] d z -[ 0 1 0 ] e z -[ 0 1 0 ] f z -[ 0 1 1 ] g z -[ 0 1 1 ] h z -[ 0 2 0 ] i z -[ 0 2 0 ] j z -[ 0 2 1 ] k z -[ 0 2 1 ] l z -[ 1 0 0 ] m z -[ 1 0 0 ] n z -[ 1 0 1 ] p z -[ 1 0 1 ] q z -[ 1 1 0 ] r z -[ 1 1 0 ] s z -[ 1 1 1 ] t z -[ 1 1 1 ] u z -[ 1 2 0 ] v z -[ 1 2 0 ] w z -[ 1 2 1 ] x z -[ 2 0 0 ] A z -[ 2 0 0 ] B z -[ 2 0 1 ] C z -[ 2 0 1 ] D z -[ 2 1 0 ] E z -[ 2 1 0 ] F z -[ 2 1 1 ] G z -[ 2 1 1 ] H z -[ 2 2 0 ] I z -[ 2 2 0 ] J z -[ 2 2 1 ] K z -[ 2 2 1 ] L z -[ 3 0 0 ] M z -[ 3 0 0 ] N z -[ 3 0 1 ] P z -[ 3 0 1 ] Q z -[ 3 1 0 ] R z -[ 3 1 0 ] S z -[ 3 1 1 ] T z -[ 3 1 1 ] U z -[ 3 2 0 ] V z -[ 3 2 0 ] W z -[ 3 2 1 ] X z -[ 3 2 1 ] Z z - */ - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - make_attr(loc_id,3,dims3,"string3D",type_id,buf13); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) buf23[i][j][k]=0; - else buf23[i][j][k]=n++; - } - } - } - -/* -position bitfield3D of </g1> bitfield3D of </g1> difference ------------------------------------------------------------- -[ 0 0 0 ] 1 0 1 -[ 0 0 1 ] 2 0 2 -[ 0 1 0 ] 3 0 3 -[ 0 1 1 ] 4 0 4 -[ 0 2 0 ] 5 0 5 -[ 0 2 1 ] 6 0 6 -[ 1 0 0 ] 7 0 7 -[ 1 0 1 ] 8 0 8 -[ 1 1 0 ] 9 0 9 -[ 1 1 1 ] 10 0 10 -[ 1 2 0 ] 11 0 11 -[ 1 2 1 ] 12 0 12 -[ 2 0 0 ] 13 0 13 -[ 2 0 1 ] 14 0 14 -[ 2 1 0 ] 15 0 15 -[ 2 1 1 ] 16 0 16 -[ 2 2 0 ] 17 0 17 -[ 2 2 1 ] 18 0 18 -[ 3 0 0 ] 19 0 19 -[ 3 0 1 ] 20 0 20 -[ 3 1 0 ] 21 0 21 -[ 3 1 1 ] 22 0 22 -[ 3 2 0 ] 23 0 23 -[ 3 2 1 ] 24 0 24 -*/ - - type_id = H5Tcopy(H5T_STD_B8LE); - make_attr(loc_id,3,dims3,"bitfield3D",type_id,buf23); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - make_attr(loc_id,3,dims3,"opaque3D",type_id,buf23); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) { - buf33[i][j][k].a=0; - buf33[i][j][k].b=0; - } - else { - buf33[i][j][k].a=n++; - buf33[i][j][k].b=n++; - } - } - } - } -/*position compound3D of </g1> compound3D of </g1> difference ------------------------------------------------------------- -[ 0 0 0 ] 1 0 1 -[ 0 0 0 ] 2 0 2 -[ 0 0 1 ] 3 0 3 -[ 0 0 1 ] 4 0 4 -[ 0 1 0 ] 5 0 5 -[ 0 1 0 ] 6 0 6 -[ 0 1 1 ] 7 0 7 -[ 0 1 1 ] 8 0 8 -[ 0 2 0 ] 9 0 9 -[ 0 2 0 ] 10 0 10 -[ 0 2 1 ] 11 0 11 -[ 0 2 1 ] 12 0 12 -[ 1 0 0 ] 13 0 13 -[ 1 0 0 ] 14 0 14 -[ 1 0 1 ] 15 0 15 -[ 1 0 1 ] 16 0 16 -[ 1 1 0 ] 17 0 17 -[ 1 1 0 ] 18 0 18 -[ 1 1 1 ] 19 0 19 -[ 1 1 1 ] 20 0 20 -[ 1 2 0 ] 21 0 21 -[ 1 2 0 ] 22 0 22 -[ 1 2 1 ] 23 0 23 -[ 1 2 1 ] 24 0 24 -[ 2 0 0 ] 25 0 25 -[ 2 0 0 ] 26 0 26 -[ 2 0 1 ] 27 0 27 -[ 2 0 1 ] 28 0 28 -[ 2 1 0 ] 29 0 29 -[ 2 1 0 ] 30 0 30 -[ 2 1 1 ] 31 0 31 -[ 2 1 1 ] 32 0 32 -[ 2 2 0 ] 33 0 33 -[ 2 2 0 ] 34 0 34 -[ 2 2 1 ] 35 0 35 -[ 2 2 1 ] 36 0 36 -[ 3 0 0 ] 37 0 37 -[ 3 0 0 ] 38 0 38 -[ 3 0 1 ] 39 0 39 -[ 3 0 1 ] 40 0 40 -[ 3 1 0 ] 41 0 41 -[ 3 1 0 ] 42 0 42 -[ 3 1 1 ] 43 0 43 -[ 3 1 1 ] 44 0 44 -[ 3 2 0 ] 45 0 45 -[ 3 2 0 ] 46 0 46 -[ 3 2 1 ] 47 0 47 -[ 3 2 1 ] 48 0 48 -*/ - - - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - make_attr(loc_id,3,dims3,"compound3D",type_id,buf33); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) - status=H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,-1); - } - } - make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN; - } - } - } - -/* -position enum3D of </g1> enum3D of </g1> difference ------------------------------------------------------------- -[ 0 0 0 ] GREEN RED -[ 0 0 1 ] GREEN RED -[ 0 1 0 ] GREEN RED -[ 0 1 1 ] GREEN RED -[ 0 2 0 ] GREEN RED -[ 0 2 1 ] GREEN RED -[ 1 0 0 ] GREEN RED -[ 1 0 1 ] GREEN RED -[ 1 1 0 ] GREEN RED -[ 1 1 1 ] GREEN RED -[ 1 2 0 ] GREEN RED -[ 1 2 1 ] GREEN RED -[ 2 0 0 ] GREEN RED -[ 2 0 1 ] GREEN RED -[ 2 1 0 ] GREEN RED -[ 2 1 1 ] GREEN RED -[ 2 2 0 ] GREEN RED -[ 2 2 1 ] GREEN RED -[ 3 0 0 ] GREEN RED -[ 3 0 1 ] GREEN RED -[ 3 1 0 ] GREEN RED -[ 3 1 1 ] GREEN RED -[ 3 2 0 ] GREEN RED -[ 3 2 1 ] GREEN RED -*/ - - - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - make_attr(loc_id,3,dims3,"enum3D",type_id,buf453); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - int l; - buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); - buf53[i][j][k].len = i + 1; - for (l = 0; l < i + 1; l++) - if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0; - else ((int *)buf53[i][j][k].p)[l] = n++; - } - } - } -/* -position vlen3D of </g1> vlen3D of </g1> difference ------------------------------------------------------------- -[ 0 0 1 ] 1 0 1 -[ 0 1 0 ] 2 0 2 -[ 0 1 1 ] 3 0 3 -[ 0 2 0 ] 4 0 4 -[ 0 2 1 ] 5 0 5 -[ 1 0 0 ] 6 0 6 -[ 1 0 0 ] 7 0 7 -[ 1 0 1 ] 8 0 8 -[ 1 0 1 ] 9 0 9 -[ 1 1 0 ] 10 0 10 -etc -*/ - space_id = H5Screate_simple(3,dims3,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - attr_id = H5Acreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT); - status = H5Awrite(attr_id,type_id,buf53); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53); - assert(status>=0); - status = H5Aclose(attr_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - n=1; - for (i = 0; i < 24; i++) { - for (j = 0; j < (int)dimarray[0]; j++) { - if (make_diffs) buf63[i][j]=0; - else buf63[i][j]=n++; - } - } - /* - position array3D of </g1> array3D of </g1> difference ------------------------------------------------------------- -[ 0 0 0 ] 1 0 1 -[ 0 0 0 ] 2 0 2 -[ 0 0 0 ] 3 0 3 -[ 0 0 1 ] 4 0 4 -[ 0 0 1 ] 5 0 5 -[ 0 0 1 ] 6 0 6 -[ 0 1 0 ] 7 0 7 -etc -*/ - - type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL); - make_attr(loc_id,3,dims3,"array3D",type_id,buf63); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - n=1; f=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) { - buf73[i][j][k]=0; - buf83[i][j][k]=0; - } - else { - buf73[i][j][k]=n++; - buf83[i][j][k]=f++; - } - } - } - } - - /* - position integer3D of </g1> integer3D of </g1> difference ------------------------------------------------------------- -[ 0 0 0 ] 1 0 1 -[ 0 0 1 ] 2 0 2 -[ 0 1 0 ] 3 0 3 -[ 0 1 1 ] 4 0 4 -[ 0 2 0 ] 5 0 5 -[ 0 2 1 ] 6 0 6 -[ 1 0 0 ] 7 0 7 -[ 1 0 1 ] 8 0 8 -[ 1 1 0 ] 9 0 9 -[ 1 1 1 ] 10 0 10 -etc -*/ - make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73); - make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83); -} - - - diff --git a/tools/h5repack/testh5repack_detect_szip.c b/tools/h5repack/testh5repack_detect_szip.c index 095910e..16962af 100644 --- a/tools/h5repack/testh5repack_detect_szip.c +++ b/tools/h5repack/testh5repack_detect_szip.c @@ -16,7 +16,6 @@ #include "hdf5.h" #include "h5test.h" #include "h5repack.h" -#include "testh5repack.h" /*------------------------------------------------------------------------- diff --git a/tools/h5repack/testh5repack_dset.c b/tools/h5repack/testh5repack_dset.c deleted file mode 100644 index 0e6fbc2..0000000 --- a/tools/h5repack/testh5repack_dset.c +++ /dev/null @@ -1,698 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "hdf5.h" -#include "h5test.h" -#include "h5repack.h" -#include "testh5repack.h" - -static void make_dset_reg_ref(hid_t loc_id); - - -/*------------------------------------------------------------------------- - * Function: write_dset_in - * - * Purpose: write datasets in LOC_ID - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ - - -void write_dset_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t file_id, - int make_diffs /* flag to modify data buffers */) -{ - /* Compound datatype */ - typedef struct s_t - { - char a; - double b; - } s_t; - - typedef enum - { - RED, - GREEN - } e_t; - - hid_t dset_id; - hid_t space_id; - hid_t type_id; - hid_t plist_id; - herr_t status; - int val, i, j, k, n; - float f; - - /* create 1D attributes with dimension [2], 2 elements */ - hsize_t dims[1]={2}; - hsize_t dims1r[1]={1}; - char buf1[2][2]= {"ab","de"}; /* string */ - char buf2[2]= {1,2}; /* bitfield, opaque */ - s_t buf3[2]= {{1,2},{3,4}}; /* compound */ - hobj_ref_t buf4[1]; /* reference */ - e_t buf45[2]= {RED,GREEN}; /* enum */ - hvl_t buf5[2]; /* vlen */ - hsize_t dimarray[1]={3}; /* array dimension */ - int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int buf7[2]= {1,2}; /* integer */ - float buf8[2]= {1,2}; /* float */ - - /* create 2D attributes with dimension [3][2], 6 elements */ - hsize_t dims2[2]={3,2}; - hsize_t dims2r[2]={1,1}; - char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */ - char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ - s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ - hobj_ref_t buf42[1][1]; /* reference */ - hvl_t buf52[3][2]; /* vlen */ - int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ - int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ - float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ - - /* create 3D attributes with dimension [4][3][2], 24 elements */ - hsize_t dims3[3]={4,3,2}; - hsize_t dims3r[3]={1,1,1}; - char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ - char buf23[4][3][2]; /* bitfield, opaque */ - s_t buf33[4][3][2]; /* compound */ - hobj_ref_t buf43[1][1][1]; /* reference */ - hvl_t buf53[4][3][2]; /* vlen */ - int buf63[24][3]; /* array */ - int buf73[4][3][2]; /* integer */ - float buf83[4][3][2]; /* float */ - - -/*------------------------------------------------------------------------- - * 1D - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<2; j++) - { - buf1[i][j]='z'; - } - } - - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - write_dset(loc_id,1,dims,"string",type_id,buf1); - status = H5Tclose(type_id); - - - /* create hard link */ - status = H5Glink(loc_id, H5L_TYPE_HARD, "string", "string_link"); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - buf2[i]=buf2[1]=0; - } - - type_id = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,1,dims,"bitfield",type_id,buf2); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf3[i].a=0; buf3[i].b=0; - } - } - - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,1,dims,"opaque",type_id,buf2); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf45[i]=GREEN; - } - } - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,1,dims,"compound",type_id,buf3); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* object references ( H5R_OBJECT ) */ - if (dset_name) - { - status=H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1); - write_dset(loc_id,1,dims1r,"refobj",H5T_STD_REF_OBJ,buf4); - } - - /* Dataset region reference ( H5R_DATASET_REGION ) */ - make_dset_reg_ref(loc_id); - - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_dset(loc_id,1,dims,"enum",type_id,buf45); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - - buf5[0].len = 1; - buf5[0].p = malloc( 1 * sizeof(int)); - ((int *)buf5[0].p)[0]=1; - buf5[1].len = 2; - buf5[1].p = malloc( 2 * sizeof(int)); - ((int *)buf5[1].p)[0]=2; - ((int *)buf5[1].p)[1]=3; - - if (make_diffs) - { - ((int *)buf5[0].p)[0]=0; - ((int *)buf5[1].p)[0]=0; - ((int *)buf5[1].p)[1]=0; - } - - space_id = H5Screate_simple(1,dims,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - dset_id = H5Dcreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT); - status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf5); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5); - assert(status>=0); - status = H5Dclose(dset_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<3; j++) - { - buf6[i][j]=0; - } - } - - type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL); - write_dset(loc_id,1,dims,"array",type_id,buf6); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf7[i]=0; - buf8[i]=0; - } - } - - write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7); - write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8); - - -/*------------------------------------------------------------------------- - * 2D - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf12, 'z', sizeof buf12); - } - - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - write_dset(loc_id,2,dims2,"string2D",type_id,buf12); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - - if (make_diffs) - { - memset(buf22,0,sizeof buf22); - } - - type_id = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,2,dims2,"bitfield2D",type_id,buf22); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,2,dims2,"opaque2D",type_id,buf22); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf32,0,sizeof buf32); - } - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,2,dims2,"compound2D",type_id,buf32); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 1; i++) { - for (j = 0; j < 1; j++) { - status=H5Rcreate(&buf42[i][j],file_id,dset_name,H5R_OBJECT,-1); - } - } - write_dset(loc_id,2,dims2r,"refobj2D",H5T_STD_REF_OBJ,buf42); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_dset(loc_id,2,dims2,"enum2D",type_id,0); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - -/* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 3; i++) { - for (j = 0; j < 2; j++) { - int l; - buf52[i][j].p = malloc((i + 1) * sizeof(int)); - buf52[i][j].len = i + 1; - for (l = 0; l < i + 1; l++) - if (make_diffs)((int *)buf52[i][j].p)[l] = 0; - else ((int *)buf52[i][j].p)[l] = n++; - } - } - - space_id = H5Screate_simple(2,dims2,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - dset_id = H5Dcreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT); - status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf52); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52); - assert(status>=0); - status = H5Dclose(dset_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf62,0,sizeof buf62); - } - - - type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL); - write_dset(loc_id,2,dims2,"array2D",type_id,buf62); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER, write a fill value - *------------------------------------------------------------------------- - */ - - - if (make_diffs) - { - memset(buf72,0,sizeof buf72); - memset(buf82,0,sizeof buf82); - } - - - plist_id = H5Pcreate(H5P_DATASET_CREATE); - space_id = H5Screate_simple(2,dims2,NULL); - dset_id = H5Dcreate(loc_id,"integer2D",H5T_NATIVE_INT,space_id,plist_id); - status = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf72); - status = H5Pclose(plist_id); - status = H5Dclose(dset_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_FLOAT - *------------------------------------------------------------------------- - */ - - write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82); - - -/*------------------------------------------------------------------------- - * 3D - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - - if (make_diffs) - { - memset(buf13,'z',sizeof buf13); - } - - type_id = H5Tcopy(H5T_C_S1); - status = H5Tset_size(type_id, 2); - write_dset(loc_id,3,dims3,"string3D",type_id,buf13); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) buf23[i][j][k]=0; - else buf23[i][j][k]=n++; - } - } - } - - - type_id = H5Tcopy(H5T_STD_B8LE); - write_dset(loc_id,3,dims3,"bitfield3D",type_id,buf23); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ - type_id = H5Tcreate(H5T_OPAQUE, 1); - status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */ - write_dset(loc_id,3,dims3,"opaque3D",type_id,buf23); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - - n=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) { - buf33[i][j][k].a=0; - buf33[i][j][k].b=0; - } - else { - buf33[i][j][k].a=n++; - buf33[i][j][k].b=n++; - } - } - } - } - - - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE); - write_dset(loc_id,3,dims3,"compound3D",type_id,buf33); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ - /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 1; i++) { - for (j = 0; j < 1; j++) { - for (k = 0; k < 1; k++) - status=H5Rcreate(&buf43[i][j][k],file_id,dset_name,H5R_OBJECT,-1); - } - } - write_dset(loc_id,3,dims3r,"refobj3D",H5T_STD_REF_OBJ,buf43); - } - -/*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - - type_id = H5Tcreate(H5T_ENUM, sizeof(e_t)); - H5Tenum_insert(type_id, "RED", (val = 0, &val)); - H5Tenum_insert(type_id, "GREEN", (val = 1, &val)); - write_dset(loc_id,3,dims3,"enum3D",type_id,0); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ - - /* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - int l; - buf53[i][j][k].p = malloc((i + 1) * sizeof(int)); - buf53[i][j][k].len = i + 1; - for (l = 0; l < i + 1; l++) - if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0; - else ((int *)buf53[i][j][k].p)[l] = n++; - } - } - } - - space_id = H5Screate_simple(3,dims3,NULL); - type_id = H5Tvlen_create(H5T_NATIVE_INT); - dset_id = H5Dcreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT); - status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf53); - assert(status>=0); - status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53); - assert(status>=0); - status = H5Dclose(dset_id); - status = H5Tclose(type_id); - status = H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - - - n=1; - for (i = 0; i < 24; i++) { - for (j = 0; j < (int)dimarray[0]; j++) { - if (make_diffs) buf63[i][j]=0; - else buf63[i][j]=n++; - } - } - - type_id = H5Tarray_create(H5T_NATIVE_INT, 1, dimarray, NULL); - write_dset(loc_id,3,dims3,"array3D",type_id,buf63); - status = H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - n=1; f=1; - for (i = 0; i < 4; i++) { - for (j = 0; j < 3; j++) { - for (k = 0; k < 2; k++) { - if (make_diffs) { - buf73[i][j][k]=0; - buf83[i][j][k]=0; - } - else { - buf73[i][j][k]=n++; - buf83[i][j][k]=f++; - } - } - } - } - write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73); - write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83); -} - - - -/*------------------------------------------------------------------------- - * Function: make_dset_reg_ref - * - * Purpose: write dataset region references - * - *------------------------------------------------------------------------- - */ - -#define SPACE1_RANK 1 -#define SPACE1_DIM1 1 -#define SPACE2_RANK 2 -#define SPACE2_DIM1 10 -#define SPACE2_DIM2 10 -#define NPOINTS 10 - -static void make_dset_reg_ref(hid_t loc_id) -{ - hid_t dset1; /* Dataset ID */ - hid_t dset2; /* Dereferenced dataset ID */ - hid_t sid1; /* Dataspace ID #1 */ - hid_t sid2; /* Dataspace ID #2 */ - hsize_t dims1[] = {SPACE1_DIM1}; - hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2}; - hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ - hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */ - hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ - hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */ - hdset_reg_ref_t *wbuf; /* buffer to write to disk */ - int *dwbuf; /* Buffer for writing numeric data to disk */ - int i; /* counting variables */ - herr_t ret; /* Generic return value */ - - /* Allocate write & read buffers */ - wbuf=calloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1); - dwbuf=malloc(sizeof(int)*SPACE2_DIM1*SPACE2_DIM2); - - /* Create dataspace for datasets */ - sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL); - - /* Create a dataset */ - dset2=H5Dcreate(loc_id,"dsetreg",H5T_NATIVE_UCHAR,sid2,H5P_DEFAULT); - - for(i=0; i<SPACE2_DIM1*SPACE2_DIM2; i++) - dwbuf[i]=i*3; - - /* Write selection to disk */ - ret=H5Dwrite(dset2,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,dwbuf); - - /* Close Dataset */ - ret = H5Dclose(dset2); - - /* Create dataspace for the reference dataset */ - sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL); - - /* Create a dataset */ - dset1=H5Dcreate(loc_id,"refreg",H5T_STD_REF_DSETREG,sid1,H5P_DEFAULT); - - /* Create references */ - - /* Select 6x6 hyperslab for first reference */ - start[0]=2; start[1]=2; - stride[0]=1; stride[1]=1; - count[0]=6; count[1]=6; - block[0]=1; block[1]=1; - ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block); - - /* Store dataset region */ - ret = H5Rcreate(&wbuf[0],loc_id,"dsetreg",H5R_DATASET_REGION,sid2); - - /* Write selection to disk */ - ret=H5Dwrite(dset1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf); - - /* Close all objects */ - ret = H5Sclose(sid1); - ret = H5Dclose(dset1); - ret = H5Sclose(sid2); - - free(wbuf); - free(dwbuf); -} diff --git a/tools/h5repack/testh5repack_main.c b/tools/h5repack/testh5repack_main.c deleted file mode 100644 index 40658d9..0000000 --- a/tools/h5repack/testh5repack_main.c +++ /dev/null @@ -1,1221 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "hdf5.h" -#include "h5test.h" -#include "h5repack.h" -#include "testh5repack.h" -#include "h5diff.h" - -const char *H5REPACK_FILENAMES[] = { - "test_bigout", - NULL -}; - -/*------------------------------------------------------------------------- - * Function: main - * - * Purpose: Executes h5repack tests - * - * Return: Success: zero - * Failure: non-zero - * - * Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu> - * January, 6, 2004 - * - *------------------------------------------------------------------------- - */ - -const char *progname = "h5repacktst"; -int d_status = EXIT_SUCCESS; - -int main (int argc, const char *argv[]) -{ - pack_opt_t pack_options; - diff_opt_t diff_options; -#if defined (H5_HAVE_FILTER_SZIP) - int szip_can_encode = 0; -#endif - hid_t fapl; - - /* initialize */ - memset(&diff_options, 0, sizeof (diff_opt_t)); - memset(&pack_options, 0, sizeof (pack_opt_t)); - - /* run tests */ - puts("Testing h5repack:"); - - /* setup */ - h5_reset(); - fapl = h5_fileaccess(); - - - /* make the test files */ - if (make_testfiles()<0) - goto error; - -/*------------------------------------------------------------------------- - * Format of the tests: - * - * 1) make a copy of the file with h5repack - * 2) use the h5diff utility to compare the input and output file; - * it returns RET==0 if the objects have the same data - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * file with fill values - *------------------------------------------------------------------------- - */ - TESTING(" copy of datasets (fill values)"); - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME0,FNAME0OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME0,FNAME0OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME0OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_cmpdcpl(FNAME0,FNAME0OUT)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - /*return 0;*/ - -/*------------------------------------------------------------------------- - * file with all kinds of dataset datatypes - *------------------------------------------------------------------------- - */ - TESTING(" copy of datasets (all datatypes)"); - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME1OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_cmpdcpl(FNAME1,FNAME1OUT)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - -/*------------------------------------------------------------------------- - * file with attributes - *------------------------------------------------------------------------- - */ - TESTING(" copy of datasets (attributes)"); - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME2,FNAME2OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME2,FNAME2OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME2OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_cmpdcpl(FNAME2,FNAME2OUT)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - -/*------------------------------------------------------------------------- - * file with hardlinks - *------------------------------------------------------------------------- - */ - TESTING(" copy of datasets (hardlinks)"); - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME3,FNAME3OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME3,FNAME3OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME3OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_cmpdcpl(FNAME3,FNAME3OUT)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); - -/*------------------------------------------------------------------------- - * alloc early test - *------------------------------------------------------------------------- - */ - TESTING(" copy of allocation early file"); - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME5,FNAME5OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME5,FNAME5OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME5OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - -/*------------------------------------------------------------------------- - * the remaining files differ in the dcpl's - *------------------------------------------------------------------------- - */ - -/*------------------------------------------------------------------------- - * deflate - *------------------------------------------------------------------------- - */ - TESTING(" adding deflate filter"); - -#ifdef H5_HAVE_FILTER_DEFLATE - -/*------------------------------------------------------------------------- - * test an individual object option - *------------------------------------------------------------------------- - */ - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset1:GZIP=9",&pack_options)<0) - TEST_ERROR; - if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); -#else - SKIPPED(); -#endif - -/*------------------------------------------------------------------------- - * test all objects option - *------------------------------------------------------------------------- - */ - - TESTING(" adding deflate filter to all"); - -#ifdef H5_HAVE_FILTER_DEFLATE - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("GZIP=1",&pack_options)<0) - TEST_ERROR; - if (h5repack_addlayout("CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - -/*------------------------------------------------------------------------- - * SZIP - *------------------------------------------------------------------------- - */ - - TESTING(" adding szip filter"); - -#if defined (H5_HAVE_FILTER_SZIP) -if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) { - szip_can_encode = 1; -} - -/*------------------------------------------------------------------------- - * test an individual object option - *------------------------------------------------------------------------- - */ - -if (szip_can_encode) { - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset2:SZIP=8,EC",&pack_options)<0) - TEST_ERROR; - if (h5repack_addlayout("dset2:CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -} else { - SKIPPED(); -} -#else - SKIPPED(); -#endif - - -/*------------------------------------------------------------------------- - * test all objects option - *------------------------------------------------------------------------- - */ -TESTING(" adding szip filter to all"); - -#if defined (H5_HAVE_FILTER_SZIP) -if (szip_can_encode) { - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("SZIP=8,NN",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -} else { - SKIPPED(); -} -#else - SKIPPED(); -#endif - - - TESTING(" addding shuffle filter"); - -#ifdef H5_HAVE_FILTER_SHUFFLE - -/*------------------------------------------------------------------------- - * test an individual object option - *------------------------------------------------------------------------- - */ - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset1:SHUF",&pack_options)<0) - TEST_ERROR; - if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - -/*------------------------------------------------------------------------- - * test all objects option - *------------------------------------------------------------------------- - */ - -TESTING(" addding shuffle filter to all"); - -#ifdef H5_HAVE_FILTER_SHUFFLE - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("SHUF",&pack_options)<0) - TEST_ERROR; - if (h5repack_addlayout("CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - - - TESTING(" adding checksum filter"); - -#ifdef H5_HAVE_FILTER_FLETCHER32 - -/*------------------------------------------------------------------------- - * test an individual object option - *------------------------------------------------------------------------- - */ - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset1:FLET",&pack_options)<0) - TEST_ERROR; - if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - -/*------------------------------------------------------------------------- - * test all objects option - *------------------------------------------------------------------------- - */ - - - TESTING(" adding checksum filter to all"); - -#ifdef H5_HAVE_FILTER_FLETCHER32 - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("FLET",&pack_options)<0) - TEST_ERROR; - if (h5repack_addlayout("CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - - TESTING(" filter queue fletcher, shuffle, deflate, szip"); - -/*------------------------------------------------------------------------- - * add some filters - *------------------------------------------------------------------------- - */ - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset1:CHUNK 20x10",&pack_options)<0) - TEST_ERROR; - -#if defined (H5_HAVE_FILTER_FLETCHER32) - if (h5repack_addfilter("dset1:FLET",&pack_options)<0) - TEST_ERROR; -#endif - -#ifdef H5_HAVE_FILTER_SHUFFLE - if (h5repack_addfilter("dset1:SHUF",&pack_options)<0) - TEST_ERROR; -#endif - -#if defined (H5_HAVE_FILTER_SZIP) -if (szip_can_encode) { - if (h5repack_addfilter("dset1:SZIP=8,NN",&pack_options)<0) - TEST_ERROR; -} -#endif - -#ifdef H5_HAVE_FILTER_DEFLATE - if (h5repack_addfilter("dset1:GZIP=1",&pack_options)<0) - TEST_ERROR; -#endif - - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); - - - TESTING(" adding layout chunked"); - -/*------------------------------------------------------------------------- - * test an individual object option - *------------------------------------------------------------------------- - */ - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - -/*------------------------------------------------------------------------- - * test all objects option - *------------------------------------------------------------------------- - */ - TESTING(" adding layout chunked to all"); - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("CHUNK=20x10",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); - - TESTING(" adding layout contiguous"); - -/*------------------------------------------------------------------------- - * test an individual object option - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset1:CONTI",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); - - TESTING(" adding layout contiguous to all"); - -/*------------------------------------------------------------------------- - * test all objects option - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("CONTI",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); - - TESTING(" adding layout compact"); - -/*------------------------------------------------------------------------- - * test an individual object option - *------------------------------------------------------------------------- - */ - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset1:COMPA",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" adding layout compact to all"); - -/*------------------------------------------------------------------------- - * test all objects option - *------------------------------------------------------------------------- - */ - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("COMPA",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); - - - TESTING(" layout compact to contiguous conversion"); - -/*------------------------------------------------------------------------- - * layout compact to contiguous conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_compact:CONTI",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" layout compact to chunk conversion"); - -/*------------------------------------------------------------------------- - * layout compact to chunk conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_compact:CHUNK=2x5",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" layout compact to compact conversion"); - -/*------------------------------------------------------------------------- - * layout compact to compact conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_compact:COMPA",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" layout contiguous to compact conversion"); -/*------------------------------------------------------------------------- - * layout contiguous to compact conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_contiguous:COMPA",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" layout contiguous to chunk conversion"); -/*------------------------------------------------------------------------- - * layout contiguous to chunk conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_contiguous:CHUNK=3x6",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" layout contiguous to contiguous conversion"); - -/*------------------------------------------------------------------------- - * layout contiguous to contiguous conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_contiguous:CONTI",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" layout chunked to compact conversion"); -/*------------------------------------------------------------------------- - * layout chunked to compact conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_chunk:COMPA",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" layout chunked to contiguous conversion"); - -/*------------------------------------------------------------------------- - * layout chunked to contiguous conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_chunk:CONTI",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - TESTING(" layout chunked to chunk conversion"); -/*------------------------------------------------------------------------- - * layout chunked to chunked conversion - *------------------------------------------------------------------------- - */ - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addlayout("dset_chunk:CHUNK=18x13",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME4OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - -/*------------------------------------------------------------------------- - * the following tests assume the input files have filters - * FNAME7 "test_szip.h5" - * FNAME8 "test_deflate.h5" - * FNAME9 "test_shuffle.h5" - * FNAME10 "test_fletcher32.h5" - * FNAME11 "test_all.h5" - *------------------------------------------------------------------------- - */ - - - TESTING(" copy of szip filter"); - -#if defined (H5_HAVE_FILTER_SZIP) -if (szip_can_encode) { - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME7OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -} else { - SKIPPED(); -} -#else - SKIPPED(); -#endif - - TESTING(" removing szip filter"); - -#if defined (H5_HAVE_FILTER_SZIP) -if (szip_can_encode) { - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_szip:NONE",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME7OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -} else { - SKIPPED(); -} -#else - SKIPPED(); -#endif - - - TESTING(" copy of deflate filter"); - -#ifdef H5_HAVE_FILTER_DEFLATE - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME8OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - - TESTING(" removing deflate filter"); - -#ifdef H5_HAVE_FILTER_DEFLATE - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_deflate:NONE",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME8OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - - - TESTING(" copy of shuffle filter"); - -#ifdef H5_HAVE_FILTER_SHUFFLE - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME9OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - TESTING(" removing shuffle filter"); - -#ifdef H5_HAVE_FILTER_SHUFFLE - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_shuffle:NONE",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME9OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - TESTING(" copy of fletcher filter"); - -#ifdef H5_HAVE_FILTER_FLETCHER32 - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME10OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - TESTING(" removing fletcher filter"); - -#ifdef H5_HAVE_FILTER_FLETCHER32 - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_fletcher32:NONE",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME10OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - - TESTING(" copy of nbit filter"); - -#ifdef H5_HAVE_FILTER_NBIT - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME12OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - TESTING(" removing nbit filter"); - -#ifdef H5_HAVE_FILTER_NBIT - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_nbit:NONE",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME12OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - TESTING(" adding nbit filter"); - -#ifdef H5_HAVE_FILTER_NBIT - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_int31:NBIT",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME12OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - TESTING(" copy of scaleoffset filter"); - -#ifdef H5_HAVE_FILTER_SCALEOFFSET - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME13OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - TESTING(" removing scaleoffset filter"); - -#ifdef H5_HAVE_FILTER_SCALEOFFSET - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_scaleoffset:NONE",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME13OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - - - TESTING(" adding scaleoffset filter"); - -#ifdef H5_HAVE_FILTER_SCALEOFFSET - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_none:SOFF=31,IN",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME13OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - -/*------------------------------------------------------------------------- - * file with all filters - * dset_all - * dset_deflate - * dset_szip - * dset_shuffle - * dset_fletcher32 - *------------------------------------------------------------------------- - */ - - - TESTING(" filter conversion from deflate to szip"); - -#if defined (H5_HAVE_FILTER_SZIP) \ - && defined (H5_HAVE_FILTER_DEFLATE) \ - && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE) - -if (szip_can_encode) { - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_deflate:SZIP=8,NN",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME11OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -} else { - SKIPPED(); -} -#else - SKIPPED(); -#endif - - TESTING(" filter conversion from szip to deflate"); - -#if defined (H5_HAVE_FILTER_SZIP) \ - && defined (H5_HAVE_FILTER_DEFLATE) \ - && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE) - -if (szip_can_encode) { - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("dset_szip:GZIP=1",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME11OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -} else { - SKIPPED(); -} -#else - SKIPPED(); -#endif - - -/*------------------------------------------------------------------------- - * test the NONE global option - *------------------------------------------------------------------------- - */ - - TESTING(" removing all filters"); - -#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) \ - && defined (H5_HAVE_FILTER_FLETCHER32) && defined (H5_HAVE_FILTER_SHUFFLE) - - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack_addfilter("NONE",&pack_options)<0) - TEST_ERROR; - if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME11OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - - PASSED(); -#else - SKIPPED(); -#endif - -/*------------------------------------------------------------------------- - * test a big file - *------------------------------------------------------------------------- - */ - TESTING(" big file"); - if (h5repack_init (&pack_options, 0)<0) - TEST_ERROR; - if (h5repack(FNAME14,FNAME14OUT,&pack_options) < 0) - TEST_ERROR; - if (h5diff(FNAME14,FNAME14OUT,NULL,NULL,&diff_options) == 1) - TEST_ERROR; - if (h5repack_verify(FNAME14OUT,&pack_options)<=0) - TEST_ERROR; - if (h5repack_end (&pack_options)<0) - TEST_ERROR; - PASSED(); - - -/*------------------------------------------------------------------------- - * end - *------------------------------------------------------------------------- - */ - - puts("All h5repack tests passed."); - - h5_cleanup(H5REPACK_FILENAMES, fapl); - - return 0; - -error: - puts("***** H5REPACK TESTS FAILED *****"); - return 1; - -} - - - diff --git a/tools/h5repack/testh5repack_make.c b/tools/h5repack/testh5repack_make.c deleted file mode 100644 index 883244b..0000000 --- a/tools/h5repack/testh5repack_make.c +++ /dev/null @@ -1,1390 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "hdf5.h" -#include "h5test.h" -#include "h5repack.h" -#include "testh5repack.h" - -#define DIM1 40 -#define DIM2 20 -#define CDIM1 DIM1/2 -#define CDIM2 DIM2/2 -#define RANK 2 -#define GBLL ((unsigned long_long) 1024*1024*1024) - - -int make_all_objects(hid_t loc_id); -int make_attributes(hid_t loc_id); -int make_hlinks(hid_t loc_id); -int make_early(void); -int make_layout(hid_t loc_id); -#ifdef H5_HAVE_FILTER_SZIP -int make_szip(hid_t loc_id); -#endif /* H5_HAVE_FILTER_SZIP */ -int make_deflate(hid_t loc_id); -int make_shuffle(hid_t loc_id); -int make_fletcher32(hid_t loc_id); -int make_nbit(hid_t loc_id); -int make_scaleoffset(hid_t loc_id); -int make_all(hid_t loc_id); -int make_fill(hid_t loc_id); -int make_big(hid_t loc_id); - - - -/*------------------------------------------------------------------------- - * Function: make_testfiles - * - * Purpose: make a test file with all types of HDF5 objects, - * datatypes and filters - * - *------------------------------------------------------------------------- - */ -int make_testfiles(void) -{ - hid_t loc_id; /* file ID */ - - TESTING(" generating datasets"); - -/*------------------------------------------------------------------------- - * create a file for general copy test - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME0,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_fill(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create another file for general copy test (all datatypes) - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_all_objects(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create a file for attributes copy test - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_attributes(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; -/*------------------------------------------------------------------------- - * create a file for hard links test - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME3,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_hlinks(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; -/*------------------------------------------------------------------------- - * create a file for layouts test - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME4,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_layout(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create a file for the H5D_ALLOC_TIME_EARLY test - *------------------------------------------------------------------------- - */ - if (make_early()<0) - goto out; - -/*------------------------------------------------------------------------- - * create a file with the SZIP filter - *------------------------------------------------------------------------- - */ -#ifdef H5_HAVE_FILTER_SZIP - if((loc_id = H5Fcreate(FNAME7,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_szip(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; -#endif /* H5_HAVE_FILTER_SZIP */ - -/*------------------------------------------------------------------------- - * create a file with the deflate filter - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME8,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_deflate(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create a file with the shuffle filter - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME9,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_shuffle(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create a file with the fletcher32 filter - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME10,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_fletcher32(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create a file with all the filters - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME11,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_all(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create a file with the nbit filter - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME12,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_nbit(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create a file with the scaleoffset filter - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME13,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_scaleoffset(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - -/*------------------------------------------------------------------------- - * create a big file - *------------------------------------------------------------------------- - */ - if((loc_id = H5Fcreate(FNAME14,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (make_big(loc_id)<0) - goto out; - if(H5Fclose(loc_id)<0) - return -1; - PASSED(); - - return 0; - -out: - H5Fclose(loc_id); - return -1; -} - - - -/*------------------------------------------------------------------------- - * Function: make_all_objects - * - * Purpose: make a test file with all types of HDF5 objects, datatypes - * - *------------------------------------------------------------------------- - */ -int make_all_objects(hid_t loc_id) -{ - hid_t dset_id; - hid_t group_id; - hid_t type_id; - hid_t root_id; - hid_t space_id; - hsize_t dims[1]={2}; - /* Compound datatype */ - typedef struct s_t - { - int a; - float b; - } s_t; - -/*------------------------------------------------------------------------- - * H5G_DATASET - *------------------------------------------------------------------------- - */ - space_id = H5Screate_simple(1,dims,NULL); - dset_id = H5Dcreate(loc_id,"dset_referenced",H5T_NATIVE_INT,space_id,H5P_DEFAULT); - H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5G_GROUP - *------------------------------------------------------------------------- - */ - group_id = H5Gcreate(loc_id,"g1",0); - root_id = H5Gopen(loc_id, "/"); - -/*------------------------------------------------------------------------- - * H5G_TYPE - *------------------------------------------------------------------------- - */ - - /* Create a memory compound datatype */ - type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t)); - H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_INT); - H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT); - /* Commit compound datatype and close it */ - H5Tcommit(loc_id, "type", type_id); - H5Tclose(type_id); - -/*------------------------------------------------------------------------- - * H5G_LINK - *------------------------------------------------------------------------- - */ - - H5Glink(loc_id, H5L_TYPE_SOFT, "dset", "link"); - -/*------------------------------------------------------------------------- - * H5G_UDLINK - *------------------------------------------------------------------------- - */ - /* Create an external link. Other UD links are not supported by h5repack */ - H5Lcreate_external("file", "path", loc_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT); - -/*------------------------------------------------------------------------- - * write a series of datasetes - *------------------------------------------------------------------------- - */ - - write_dset_in(root_id,"dset_referenced",loc_id,0); - - /* Close */ - H5Dclose(dset_id); - H5Gclose(group_id); - H5Gclose(root_id); - - return 0; - -} - - -/*------------------------------------------------------------------------- - * Function: make_attributes - * - * Purpose: make a test file with all types of attributes - * - *------------------------------------------------------------------------- - */ -int make_attributes(hid_t loc_id) -{ - hid_t dset_id; - hid_t group_id; - hid_t root_id; - hid_t space_id; - hsize_t dims[1]={2}; - - -/*------------------------------------------------------------------------- - * H5G_DATASET - *------------------------------------------------------------------------- - */ - - space_id = H5Screate_simple(1,dims,NULL); - dset_id = H5Dcreate(loc_id,"dset",H5T_NATIVE_INT,space_id,H5P_DEFAULT); - H5Sclose(space_id); - -/*------------------------------------------------------------------------- - * H5G_GROUP - *------------------------------------------------------------------------- - */ - group_id = H5Gcreate(loc_id,"g1",0); - root_id = H5Gopen(loc_id, "/"); - -/*------------------------------------------------------------------------- - * write a series of attributes on the dataset, group, and root group - *------------------------------------------------------------------------- - */ - - write_attr_in(dset_id,"dset",loc_id,0); - write_attr_in(group_id,"dset",loc_id,0); - write_attr_in(root_id,"dset",loc_id,0); - - /* Close */ - H5Dclose(dset_id); - H5Gclose(group_id); - H5Gclose(root_id); - - return 0; - -} - -/*------------------------------------------------------------------------- - * Function: make_hlinks - * - * Purpose: make a test file with hard links - * - *------------------------------------------------------------------------- - */ -int make_hlinks(hid_t loc_id) -{ - hid_t group1_id; - hid_t group2_id; - hid_t group3_id; - hsize_t dims[2]={3,2}; - int buf[3][2]= {{1,1},{1,2},{2,2}}; - -/*------------------------------------------------------------------------- - * create a dataset and some hard links to it - *------------------------------------------------------------------------- - */ - - if (write_dset(loc_id,2,dims,"dset",H5T_NATIVE_INT,buf)<0) - return -1; - if (H5Glink(loc_id, H5L_TYPE_HARD, "dset", "link1 to dset")<0) - return -1; - if (H5Glink(loc_id, H5L_TYPE_HARD, "dset", "link2 to dset")<0) - return -1; - if (H5Glink(loc_id, H5L_TYPE_HARD, "dset", "link3 to dset")<0) - return -1; - - -/*------------------------------------------------------------------------- - * create a group and some hard links to it - *------------------------------------------------------------------------- - */ - - if ((group1_id = H5Gcreate(loc_id,"g1",0))<0) - return -1; - if ((group2_id = H5Gcreate(group1_id,"g2",0))<0) - return -1; - if ((group3_id = H5Gcreate(group2_id,"g3",0))<0) - return -1; - - if (H5Glink2(loc_id, "g1", H5L_TYPE_HARD, group2_id, "link1 to g1")<0) - return -1; - if (H5Glink2(group1_id, "g2", H5L_TYPE_HARD, group3_id, "link1 to g2")<0) - return -1; - - H5Gclose(group1_id); - H5Gclose(group2_id); - H5Gclose(group3_id); - - return 0; - -} - - -/*------------------------------------------------------------------------- - * Function: make_szip - * - * Purpose: make a dataset with the SZIP filter - * - *------------------------------------------------------------------------- - */ -#ifdef H5_HAVE_FILTER_SZIP -int make_szip(hid_t loc_id) -{ - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ - unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK; - unsigned szip_pixels_per_block=8; - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - int szip_can_encode = 0; - - for (i=n=0; i<DIM1; i++){ - for (j=0; j<DIM2; j++){ - buf[i][j]=n++; - } - } - /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL))<0) - return -1; - /* create a dcpl */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0) - goto out; - -/*------------------------------------------------------------------------- - * SZIP - *------------------------------------------------------------------------- - */ - /* Make sure encoding is enabled */ -if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) { - szip_can_encode = 1; -} -if (szip_can_encode) { - /* set szip data */ - if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block)<0) - goto out; - if (make_dset(loc_id,"dset_szip",sid,dcpl,buf)<0) - goto out; -} else { - /* WARNING? SZIP is decoder only, can't generate test files */ -} - - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - } H5E_END_TRY; - return -1; -} -#endif /* H5_HAVE_FILTER_SZIP */ - - - -/*------------------------------------------------------------------------- - * Function: make_deflate - * - * Purpose: make a dataset with the deflate filter - * - *------------------------------------------------------------------------- - */ -int make_deflate(hid_t loc_id) -{ - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i=n=0; i<DIM1; i++){ - for (j=0; j<DIM2; j++){ - buf[i][j]=n++; - } - } - - /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL))<0) - return -1; - /* create a dcpl */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0) - goto out; -/*------------------------------------------------------------------------- - * GZIP - *------------------------------------------------------------------------- - */ -#if defined (H5_HAVE_FILTER_DEFLATE) - /* set deflate data */ - if(H5Pset_deflate(dcpl, 9)<0) - goto out; - if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf)<0) - goto out; -#endif - -/*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - } H5E_END_TRY; - return -1; -} - - -/*------------------------------------------------------------------------- - * Function: make_shuffle - * - * Purpose: make a dataset with the shuffle filter - * - *------------------------------------------------------------------------- - */ -int make_shuffle(hid_t loc_id) -{ - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i=n=0; i<DIM1; i++){ - for (j=0; j<DIM2; j++){ - buf[i][j]=n++; - } - } - /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL))<0) - return -1; - /* create a dcpl */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0) - goto out; - -/*------------------------------------------------------------------------- - * shuffle - *------------------------------------------------------------------------- - */ -#if defined (H5_HAVE_FILTER_SHUFFLE) - /* set the shuffle filter */ - if (H5Pset_shuffle(dcpl)<0) - goto out; - if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf)<0) - goto out; -#endif - -/*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - } H5E_END_TRY; - return -1; -} - -/*------------------------------------------------------------------------- - * Function: make_fletcher32 - * - * Purpose: make a dataset with the fletcher32 filter - * - *------------------------------------------------------------------------- - */ -int make_fletcher32(hid_t loc_id) -{ - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i=n=0; i<DIM1; i++){ - for (j=0; j<DIM2; j++){ - buf[i][j]=n++; - } - } - /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL))<0) - return -1; - /* create a dataset creation property list; the same DCPL is used for all dsets */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0) - goto out; - - -/*------------------------------------------------------------------------- - * fletcher32 - *------------------------------------------------------------------------- - */ -#if defined (H5_HAVE_FILTER_FLETCHER32) - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - goto out; - /* set the checksum filter */ - if (H5Pset_fletcher32(dcpl)<0) - goto out; - if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf)<0) - goto out; -#endif - -/*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - } H5E_END_TRY; - return -1; -} - - -/*------------------------------------------------------------------------- - * Function: make_nbit - * - * Purpose: make a dataset with the nbit filter - * - *------------------------------------------------------------------------- - */ -int make_nbit(hid_t loc_id) -{ - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ - hid_t dtid; - hid_t dsid; - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i=n=0; i<DIM1; i++){ - for (j=0; j<DIM2; j++){ - buf[i][j]=n++; - } - } - /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL))<0) - return -1; - /* create a dataset creation property list; the same DCPL is used for all dsets */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0) - goto out; - - dtid = H5Tcopy(H5T_NATIVE_INT); - if (H5Tset_precision(dtid,(H5Tget_precision(dtid) - 1)) < 0) - { - H5Tclose(dtid); - goto out; - } - -#if defined (H5_HAVE_FILTER_NBIT) - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - { - H5Tclose(dtid); - goto out; - } - if (H5Pset_nbit(dcpl)<0) - { - H5Tclose(dtid); - goto out; - } - if((dsid = H5Dcreate (loc_id,"dset_nbit",dtid,sid,dcpl))<0) - { - H5Tclose(dtid); - goto out; - } - if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0) - { - H5Tclose(dtid); - goto out; - } - H5Dclose(dsid); - - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - { - H5Tclose(dtid); - goto out; - } - if((dsid = H5Dcreate (loc_id,"dset_int31",dtid,sid,dcpl))<0) - { - H5Tclose(dtid); - goto out; - } - if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0) - { - H5Tclose(dtid); - goto out; - } - H5Dclose(dsid); -#endif - -/*------------------------------------------------------------------------- - * close - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - if (H5Tclose(dtid)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - } H5E_END_TRY; - return -1; -} - - -/*------------------------------------------------------------------------- - * Function: make_scaleoffset - * - * Purpose: make a dataset with the scaleoffset filter - * - *------------------------------------------------------------------------- - */ -int make_scaleoffset(hid_t loc_id) -{ - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ - hid_t dtid; - hid_t dsid; - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i=n=0; i<DIM1; i++){ - for (j=0; j<DIM2; j++){ - buf[i][j]=n++; - } - } - /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL))<0) - return -1; - /* create a dataset creation property list; the same DCPL is used for all dsets */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0) - goto out; - - dtid = H5Tcopy(H5T_NATIVE_INT); - -#if defined (H5_HAVE_FILTER_SCALEOFFSET) - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - { - H5Tclose(dtid); - goto out; - } - if (H5Pset_scaleoffset(dcpl,H5Z_SO_INT,31)<0) - { - H5Tclose(dtid); - goto out; - } - if((dsid = H5Dcreate (loc_id,"dset_scaleoffset",dtid,sid,dcpl))<0) - { - H5Tclose(dtid); - goto out; - } - if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0) - { - H5Tclose(dtid); - goto out; - } - H5Dclose(dsid); - if((dsid = H5Dcreate (loc_id,"dset_none",dtid,sid,H5P_DEFAULT))<0) - { - H5Tclose(dtid); - goto out; - } - if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0) - { - H5Tclose(dtid); - goto out; - } - H5Tclose(dtid); - H5Dclose(dsid); -#endif - -/*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - } H5E_END_TRY; - return -1; -} - - -/*------------------------------------------------------------------------- - * Function: make_all - * - * Purpose: make a file with all filters - * - *------------------------------------------------------------------------- - */ -int make_all(hid_t loc_id) -{ - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ -#if defined (H5_HAVE_FILTER_NBIT) - hid_t dtid; - hid_t dsid; -#endif /* H5_HAVE_FILTER_NBIT */ -#if defined (H5_HAVE_FILTER_SZIP) - unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK; - unsigned szip_pixels_per_block=8; -#endif /* H5_HAVE_FILTER_SZIP */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; -#if defined (H5_HAVE_FILTER_SZIP) - int szip_can_encode = 0; -#endif - - for (i=n=0; i<DIM1; i++){ - for (j=0; j<DIM2; j++){ - buf[i][j]=n++; - } - } - /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL))<0) - return -1; - /* create a dataset creation property list; the same DCPL is used for all dsets */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0) - goto out; - -#if defined (H5_HAVE_FILTER_SHUFFLE) - /* set the shuffle filter */ - if (H5Pset_shuffle(dcpl)<0) - goto out; -#endif - -#if defined (H5_HAVE_FILTER_FLETCHER32) - /* set the checksum filter */ - if (H5Pset_fletcher32(dcpl)<0) - goto out; -#endif - -#if defined (H5_HAVE_FILTER_SZIP) -if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) { - szip_can_encode = 1; -} -if (szip_can_encode) { - /* set szip data */ - if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block)<0) - goto out; -} else { - /* WARNING? SZIP is decoder only, can't generate test data using szip */ -} -#endif - -#if defined (H5_HAVE_FILTER_DEFLATE) - /* set deflate data */ - if(H5Pset_deflate(dcpl, 9)<0) - goto out; -#endif - - if (make_dset(loc_id,"dset_all",sid,dcpl,buf)<0) - goto out; - -/*------------------------------------------------------------------------- - * fletcher32 - *------------------------------------------------------------------------- - */ -#if defined (H5_HAVE_FILTER_FLETCHER32) - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - goto out; - /* set the checksum filter */ - if (H5Pset_fletcher32(dcpl)<0) - goto out; - if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf)<0) - goto out; -#endif - -/*------------------------------------------------------------------------- - * SZIP - *------------------------------------------------------------------------- - */ - /* Make sure encoding is enabled */ -#if defined (H5_HAVE_FILTER_SZIP) -if (szip_can_encode) { - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - goto out; - /* set szip data */ - if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block)<0) - goto out; - if (make_dset(loc_id,"dset_szip",sid,dcpl,buf)<0) - goto out; -} else { - /* WARNING? SZIP is decoder only, can't generate test dataset */ -} -#endif - -/*------------------------------------------------------------------------- - * shuffle - *------------------------------------------------------------------------- - */ -#if defined (H5_HAVE_FILTER_SHUFFLE) - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - goto out; - /* set the shuffle filter */ - if (H5Pset_shuffle(dcpl)<0) - goto out; - if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf)<0) - goto out; -#endif - -/*------------------------------------------------------------------------- - * GZIP - *------------------------------------------------------------------------- - */ -#if defined (H5_HAVE_FILTER_DEFLATE) - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - goto out; - /* set deflate data */ - if(H5Pset_deflate(dcpl, 1)<0) - goto out; - if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf)<0) - goto out; -#endif - - -/*------------------------------------------------------------------------- - * nbit - *------------------------------------------------------------------------- - */ -#if defined (H5_HAVE_FILTER_NBIT) - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL)<0) - goto out; - /* set the shuffle filter */ - if (H5Pset_nbit(dcpl)<0) - goto out; - dtid = H5Tcopy(H5T_NATIVE_INT); - H5Tset_precision(dtid,(H5Tget_precision(dtid)-1)); - if((dsid = H5Dcreate (loc_id,"dset_nbit",dtid,sid,dcpl))<0) - goto out; - if(H5Dwrite(dsid,dtid,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0) - goto out; - - /* close */ - if(H5Tclose(dtid)<0) - return -1; - if(H5Dclose(dsid)<0) - return -1; -#endif - -/*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - } H5E_END_TRY; - return -1; -} - - - -/*------------------------------------------------------------------------- - * Function: make_early - * - * Purpose: create a file for the H5D_ALLOC_TIME_EARLY test - * - *------------------------------------------------------------------------- - */ -int make_early(void) -{ - hsize_t dims[1] ={3000}; - hsize_t cdims[1]={30}; - hid_t fid=-1; - hid_t dset_id=-1; - hid_t sid=-1; - hid_t tid=-1; - hid_t dcpl=-1; - int i; - char name[10]; - int iter=100; - - if ((fid = H5Fcreate(FNAME5,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - if (H5Fclose(fid)<0) - goto out; - - if ((sid = H5Screate_simple(1, dims, NULL))<0) - goto out; - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - if (H5Pset_chunk(dcpl,1,cdims)<0) - goto out; - if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY)<0) - goto out; - - for (i=0; i<iter; i++) - { - if ((fid = H5Fopen(FNAME5,H5F_ACC_RDWR,H5P_DEFAULT))<0) - goto out; - if ((dset_id = H5Dcreate(fid,"early",H5T_NATIVE_DOUBLE,sid,dcpl))<0) - goto out; - if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE))<0) - goto out; - sprintf(name,"%d", i); - if ((H5Tcommit(fid,name,tid))<0) - goto out; - if (H5Tclose(tid)<0) - goto out; - if (H5Dclose(dset_id)<0) - goto out; - if (H5Gunlink(fid,"early")<0) - goto out; - if (H5Fclose(fid)<0) - goto out; - } - -/*------------------------------------------------------------------------- - * do the same without close/opening the file and creating the dataset - *------------------------------------------------------------------------- - */ - - if ((fid = H5Fcreate(FNAME6,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0) - return -1; - - for (i=0; i<iter; i++) - { - if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE))<0) - goto out; - sprintf(name,"%d", i); - if ((H5Tcommit(fid,name,tid))<0) - goto out; - if (H5Tclose(tid)<0) - goto out; - } - - if (H5Sclose(sid)<0) - goto out; - if (H5Pclose(dcpl)<0) - goto out; - if (H5Fclose(fid)<0) - goto out; - - - return 0; - -out: - H5E_BEGIN_TRY { - H5Tclose(tid); - H5Pclose(dcpl); - H5Sclose(sid); - H5Dclose(dset_id); - H5Fclose(fid); - } H5E_END_TRY; - return -1; -} - - - -/*------------------------------------------------------------------------- - * Function: make_layout - * - * Purpose: make several datasets with several layouts in location LOC_ID - * - *------------------------------------------------------------------------- - */ -int make_layout(hid_t loc_id) -{ - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - char name[6]; - - - for (i=n=0; i<DIM1; i++){ - for (j=0; j<DIM2; j++){ - buf[i][j]=n++; - } - } - -/*------------------------------------------------------------------------- - * make several dataset with no filters - *------------------------------------------------------------------------- - */ - for (i=0; i<4; i++) - { - sprintf(name,"dset%d",i+1); - if (write_dset(loc_id,RANK,dims,name,H5T_NATIVE_INT,buf)<0) - return -1; - } - - -/*------------------------------------------------------------------------- - * make several dataset with several layout options - *------------------------------------------------------------------------- - */ - /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL))<0) - return -1; - /* create a dataset creation property list; the same DCPL is used for all dsets */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - -/*------------------------------------------------------------------------- - * H5D_COMPACT - *------------------------------------------------------------------------- - */ - if(H5Pset_layout (dcpl,H5D_COMPACT)<0) - goto out; - if (make_dset(loc_id,"dset_compact",sid,dcpl,buf)<0) - goto out; - -/*------------------------------------------------------------------------- - * H5D_CONTIGUOUS - *------------------------------------------------------------------------- - */ - if(H5Pset_layout (dcpl,H5D_CONTIGUOUS)<0) - goto out; - if (make_dset(loc_id,"dset_contiguous",sid,dcpl,buf)<0) - goto out; - -/*------------------------------------------------------------------------- - * H5D_CHUNKED - *------------------------------------------------------------------------- - */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims)<0) - goto out; - if (make_dset(loc_id,"dset_chunk",sid,dcpl,buf)<0) - goto out; - -/*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - } H5E_END_TRY; - return -1; -} - -/*------------------------------------------------------------------------- - * Function: make a file with an integer dataset with a fill value - * - * Purpose: test copy of fill values - * - *------------------------------------------------------------------------- - */ -int make_fill(hid_t loc_id) -{ - hid_t did; - hid_t sid; - hid_t dcpl; - hsize_t dims[2]={3,2}; - int buf[3][2]= {{1,1},{1,2},{2,2}}; - int fillvalue=2; - -/*------------------------------------------------------------------------- - * H5T_INTEGER, write a fill value - *------------------------------------------------------------------------- - */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue)<0) - goto out; - if ((sid = H5Screate_simple(2,dims,NULL))<0) - goto out; - if ((did = H5Dcreate(loc_id,"dset_fill",H5T_NATIVE_INT,sid,dcpl))<0) - goto out; - if (H5Dwrite(did,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0) - goto out; - - /* close */ - if(H5Sclose(sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - if(H5Dclose(did)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(sid); - H5Dclose(did); - } H5E_END_TRY; - return -1; - -} - -/*------------------------------------------------------------------------- - * Function: make_big - * - * Purpose: used in test read by hyperslabs. create a dataset with 1GB dimensions - * by iterating trough 1MB hyperslabs - * - *------------------------------------------------------------------------- - */ - -int make_big(hid_t loc_id) -{ - hid_t did; - hid_t f_sid; - hid_t m_sid; - hid_t tid; - hid_t dcpl; - hsize_t dims[1]={GBLL}; /* dataset dimensions */ - hsize_t hs_size[1]={GBLL/1024}; /* hyperslab dimensions */ - hsize_t chunk_dims[1]={GBLL/1024}; /* chunk dimensions */ - hsize_t hs_start[1]; - size_t size; - size_t nelmts=(size_t)GBLL/1024; - char fillvalue=-1; - char *buf=NULL; - int i, j, s; - char c; - - /* create */ - if ((dcpl = H5Pcreate(H5P_DATASET_CREATE))<0) - goto out; - if (H5Pset_fill_value(dcpl, H5T_NATIVE_CHAR, &fillvalue)<0) - goto out; - if(H5Pset_chunk(dcpl, 1, chunk_dims)<0) - goto out; - if ((f_sid = H5Screate_simple(1,dims,NULL))<0) - goto out; - if ((did = H5Dcreate(loc_id,"big",H5T_NATIVE_CHAR,f_sid,dcpl))<0) - goto out; - if ((m_sid = H5Screate_simple(1, hs_size, hs_size))<0) - goto out; - if ((tid = H5Dget_type(did))<0) - goto out; - if ((size = H5Tget_size(tid))<=0) - goto out; - - /* create a evenly divided buffer from 0 to 127 */ - buf=(char *) HDmalloc((unsigned)(nelmts*size)); - s = 1024 / 127; - for (i=0, j=0, c=0; i<1024; j++, i++) - { - if ( j==s) - { - c++; - j=0; - }; - - HDmemset(buf, c, nelmts); - - hs_start[0] = i * GBLL/1024; - if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL)<0) - goto out; - if (H5Dwrite (did,H5T_NATIVE_CHAR,m_sid,f_sid,H5P_DEFAULT,buf)<0) - goto out; - - /* write only one hyperslab */ - if (i==0) - break; - - } - free(buf); - buf=NULL; - - /* close */ - if(H5Sclose(f_sid)<0) - goto out; - if(H5Sclose(m_sid)<0) - goto out; - if(H5Pclose(dcpl)<0) - goto out; - if(H5Dclose(did)<0) - goto out; - - return 0; - -out: - H5E_BEGIN_TRY { - H5Pclose(dcpl); - H5Sclose(f_sid); - H5Sclose(m_sid); - H5Dclose(did); - } H5E_END_TRY; - return -1; - -} - diff --git a/tools/h5repack/testh5repack_util.c b/tools/h5repack/testh5repack_util.c deleted file mode 100644 index 63b8b1d..0000000 --- a/tools/h5repack/testh5repack_util.c +++ /dev/null @@ -1,154 +0,0 @@ -/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Copyright by the Board of Trustees of the University of Illinois. * - * All rights reserved. * - * * - * This file is part of HDF5. The full HDF5 copyright notice, including * - * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * - * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - -#include "hdf5.h" -#include "h5repack.h" -#include "testh5repack.h" - -/*------------------------------------------------------------------------- - * Function: make_dset - * - * Purpose: utility function to create and write a dataset in LOC_ID - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ -int make_dset(hid_t loc_id, - const char *name, - hid_t sid, - hid_t dcpl, - void *buf) -{ - hid_t dsid; - - /* create the dataset */ - if((dsid = H5Dcreate (loc_id,name,H5T_NATIVE_INT,sid,dcpl))<0) - return -1; - - /* write */ - if(H5Dwrite(dsid,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0) - goto out; - - /* close */ - if(H5Dclose(dsid)<0) - return -1; - - return 0; - out: - H5E_BEGIN_TRY { - H5Dclose(dsid); - } H5E_END_TRY; - return -1; -} - - -/*------------------------------------------------------------------------- - * Function: write_dset - * - * Purpose: utility function to create and write a dataset in LOC_ID - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ - -int write_dset( hid_t loc_id, - int rank, - hsize_t *dims, - const char *dset_name, - hid_t type_id, - void *buf ) -{ - hid_t dset_id; - hid_t space_id; - - /* Create a buf space */ - if ((space_id = H5Screate_simple(rank,dims,NULL))<0) - return -1; - - /* Create a dataset */ - if ((dset_id = H5Dcreate(loc_id,dset_name,type_id,space_id,H5P_DEFAULT))<0) - return -1; - - /* Write the buf */ - if ( buf ) - if (H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf)<0) - return -1; - - /* Close */ - if (H5Dclose(dset_id)<0) - return -1; - if (H5Sclose(space_id)<0) - return -1; - - return 0; - -} - - -/*------------------------------------------------------------------------- - * Function: write_attr - * - * Purpose: utility function to write an attribute in LOC_ID - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * - * Date: November 12, 2003 - * - *------------------------------------------------------------------------- - */ - -int make_attr(hid_t loc_id, - int rank, - hsize_t *dims, - const char *attr_name, - hid_t type_id, - void *buf) -{ - hid_t attr_id; - hid_t space_id; - - /* create a space */ - if ((space_id = H5Screate_simple(rank,dims,NULL))<0) - return -1; - - /* create the attribute */ - if ((attr_id = H5Acreate(loc_id,attr_name,type_id,space_id,H5P_DEFAULT))<0) - goto out; - - /* write the buffer */ - if ( buf ) - { - if (H5Awrite(attr_id,type_id,buf)<0) - goto out; - } - - /* close */ - H5Aclose(attr_id); - H5Sclose(space_id); - return 0; - -out: - H5E_BEGIN_TRY { - H5Aclose(attr_id); - H5Sclose(space_id); - } H5E_END_TRY; - return -1; -} - |