[svn-r24457] Bring revisions #24333 - #24432 from trunk to revise_chunks.

h5committested.

5 files changed, 54 insertions, 19 deletions

diff --git a/tools/h5repack/Makefile.am b/tools/h5repack/Makefile.am
index 663e501..eae296d 100644
--- a/tools/h5repack/Makefile.am
+++ b/tools/h5repack/Makefile.am
@@ -72,7 +72,7 @@ endif
 
 # Temporary files.  *.h5 are generated by h5repack.  They should
 # copied to the testfiles/ directory if update is required.
-CHECK_CLEANFILES+=*.h5 *.bin
+CHECK_CLEANFILES+=*.h5 *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5
 DISTCLEANFILES=h5repack.sh h5repack_plugin.sh
 
 include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in
index fc37649..9f0e6f1 100644
--- a/tools/h5repack/Makefile.in
+++ b/tools/h5repack/Makefile.in
@@ -481,7 +481,8 @@ TRACE = perl $(top_srcdir)/bin/trace
 
 # Temporary files.  *.h5 are generated by h5repack.  They should
 # copied to the testfiles/ directory if update is required.
-CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 *.bin
+CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 *.bin \
+	testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5
 
 # Include src, test, and tools/lib directories
 INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib
diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in
index 583b6ef..045aebf 100644
--- a/tools/h5repack/h5repack.sh.in
+++ b/tools/h5repack/h5repack.sh.in
@@ -42,6 +42,7 @@ H5DIFF_BIN=`pwd`/$H5DIFF        # The path of the h5diff tool binary
 H5DUMP=../h5dump/h5dump         # The h5dump tool name
 H5DUMP_BIN=`pwd`/$H5DUMP        # The path of the h5dump tool binary
 
+RM='rm -rf'
 GREP='grep'
 CP='cp'
 DIRNAME='dirname'
@@ -161,6 +162,19 @@ COPY_TESTFILES_TO_TESTDIR()
     done
 }
 
+CLEAN_TESTFILES_AND_TESTDIR()
+{
+    # skip rm if srcdir is same as destdir
+    # this occurs when build/test performed in source dir and
+    # make cp fail
+    SDIR=`$DIRNAME $tstfile`
+    INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+    INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+    if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+        $RM $TESTDIR
+    fi
+}
+
 # Print a $* message left justified in a field of 70 characters
 #
 MESSAGE() {
@@ -1088,6 +1102,9 @@ TOOLTEST HDFFV-7840 h5diff_attr1.h5
 TOOLTEST_META meta_short h5repack_layout.h5 -M 8192
 TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192
 
+# Clean up temporary files/directories
+CLEAN_TESTFILES_AND_TESTDIR
+
 if test $nerrors -eq 0 ; then
     echo "All $TESTNAME tests passed."
     exit $EXIT_SUCCESS
diff --git a/tools/h5repack/h5repack_plugin.sh.in b/tools/h5repack/h5repack_plugin.sh.in
index a45d1fe..df4b374 100644
--- a/tools/h5repack/h5repack_plugin.sh.in
+++ b/tools/h5repack/h5repack_plugin.sh.in
@@ -35,7 +35,7 @@ TEST_NAME=ud_plugin
 FROM_DIR=`pwd`/.libs
 PLUGIN_LIB="$FROM_DIR/libdynlibadd.*"
 PLUGIN_LIBDIR=testdir3
-RM="rm -rf"
+RM='rm -rf'
 
 GREP='grep'
 CP='cp'
@@ -118,6 +118,19 @@ COPY_TESTFILES_TO_TESTDIR()
     done
 }
 
+CLEAN_TESTFILES_AND_TESTDIR()
+{
+    # skip rm if srcdir is same as destdir
+    # this occurs when build/test performed in source dir and
+    # make cp fail
+    SDIR=`$DIRNAME $tstfile`
+    INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+    INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+    if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+        $RM $TESTDIR
+    fi
+}
+
 # Print a $* message left justified in a field of 70 characters
 #
 MESSAGE() {
@@ -233,6 +246,10 @@ else
     exit_code=$EXIT_SUCCESS
 fi
 
+# Clean up temporary files/directories
+CLEAN_TESTFILES_AND_TESTDIR
+
 # Clean up temporary files/directories and leave
 $RM $PLUGIN_LIBDIR
+
 exit $exit_code
diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c
index cc4e063..4b6a00b 100644
--- a/tools/h5repack/h5repacktst.c
+++ b/tools/h5repack/h5repacktst.c
@@ -3382,7 +3382,7 @@ int make_big(hid_t loc_id)
         goto out;
 
     /* initialize buffer to 0  */
-    buf=(signed  char *) calloc( nelmts, size);
+    buf=(signed  char *) HDcalloc( nelmts, size);
 
     if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0)
         goto out;
@@ -3863,10 +3863,10 @@ int write_dset_in(hid_t loc_id,
     /* Allocate and initialize VL dataset to write */
 
     buf5[0].len = 1;
-    buf5[0].p = malloc( 1 * sizeof(int));
+    buf5[0].p = HDmalloc( 1 * sizeof(int));
     ((int *)buf5[0].p)[0]=1;
     buf5[1].len = 2;
-    buf5[1].p = malloc( 2 * sizeof(int));
+    buf5[1].p = HDmalloc( 2 * sizeof(int));
     ((int *)buf5[1].p)[0] = 2;
     ((int *)buf5[1].p)[1] = 3;
 
@@ -3925,7 +3925,7 @@ int write_dset_in(hid_t loc_id,
 
         /* allocate and initialize array data to write */
         size = ( TEST_BUFSIZE / sizeof(double) + 1 ) * sizeof(double);
-        dbuf = (double*)malloc( size );
+        dbuf = (double*)HDmalloc( size );
         if (NULL == dbuf)
         {
             printf ("\nError: Cannot allocate memory for \"arrayd\" data buffer size %dMB.\n", (int) size / 1000000 );
@@ -4099,7 +4099,7 @@ int write_dset_in(hid_t loc_id,
         {
             int l;
 
-            buf52[i][j].p = malloc((i + 1) * sizeof(int));
+            buf52[i][j].p = HDmalloc((i + 1) * sizeof(int));
             buf52[i][j].len = (size_t)(i + 1);
             for(l = 0; l < i + 1; l++)
             {
@@ -4320,7 +4320,7 @@ int write_dset_in(hid_t loc_id,
             {
                 int l;
 
-                buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
+                buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int));
                 buf53[i][j][k].len = (size_t)(i + 1);
                 for(l = 0; l < i + 1; l++)
                 {
@@ -4450,8 +4450,8 @@ int make_dset_reg_ref(hid_t loc_id)
     int             retval = -1;  /* return value */
 
     /* Allocate write & read buffers */
-    wbuf = (hdset_reg_ref_t *)calloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
-    dwbuf = (int *)malloc(sizeof(int) * SPACE2_DIM1 * SPACE2_DIM2);
+    wbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
+    dwbuf = (int *)HDmalloc(sizeof(int) * SPACE2_DIM1 * SPACE2_DIM2);
 
     /* Create dataspace for datasets */
     if ((sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL)) < 0)
@@ -4791,10 +4791,10 @@ int write_attr_in(hid_t loc_id,
     /* Allocate and initialize VL dataset to write */
 
     buf5[0].len = 1;
-    buf5[0].p = malloc( 1 * sizeof(int));
+    buf5[0].p = HDmalloc( 1 * sizeof(int));
     ((int *)buf5[0].p)[0]=1;
     buf5[1].len = 2;
-    buf5[1].p = malloc(2 * sizeof(int));
+    buf5[1].p = HDmalloc(2 * sizeof(int));
     ((int *)buf5[1].p)[0] = 2;
     ((int *)buf5[1].p)[1] = 3;
 
@@ -5111,7 +5111,7 @@ int write_attr_in(hid_t loc_id,
         for (j = 0; j < 2; j++)
         {
             int l;
-            buf52[i][j].p = malloc((i + 1) * sizeof(int));
+            buf52[i][j].p = HDmalloc((i + 1) * sizeof(int));
             buf52[i][j].len = (size_t)(i + 1);
             for (l = 0; l < i + 1; l++)
                 if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
@@ -5577,7 +5577,7 @@ int write_attr_in(hid_t loc_id,
             for (k = 0; k < 2; k++)
             {
                 int l;
-                buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
+                buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int));
                 buf53[i][j][k].len = (size_t)i + 1;
                 for (l = 0; l < i + 1; l++)
                     if (make_diffs)
@@ -6803,11 +6803,11 @@ static herr_t make_complex_attr_references(hid_t loc_id)
      * prepare vlen data
      */
      vlen_objref_data[0].len = LEN0_VLEN_OBJREF;
-     vlen_objref_data[0].p = malloc (vlen_objref_data[0].len * sizeof(hobj_ref_t));
+     vlen_objref_data[0].p = HDmalloc (vlen_objref_data[0].len * sizeof(hobj_ref_t));
      vlen_objref_data[1].len = LEN1_VLEN_OBJREF;
-     vlen_objref_data[1].p = malloc (vlen_objref_data[1].len * sizeof(hobj_ref_t));
+     vlen_objref_data[1].p = HDmalloc (vlen_objref_data[1].len * sizeof(hobj_ref_t));
      vlen_objref_data[2].len = LEN2_VLEN_OBJREF;
-     vlen_objref_data[2].p = malloc (vlen_objref_data[2].len * sizeof(hobj_ref_t));
+     vlen_objref_data[2].p = HDmalloc (vlen_objref_data[2].len * sizeof(hobj_ref_t));
 
      /* 
       * create obj references 
@@ -6872,7 +6872,7 @@ static herr_t make_complex_attr_references(hid_t loc_id)
      * prepare vlen data
      */
     vlen_regref_data[0].len = LEN0_VLEN_REGREF;
-    vlen_regref_data[0].p = malloc (vlen_regref_data[0].len * sizeof(hdset_reg_ref_t));
+    vlen_regref_data[0].p = HDmalloc (vlen_regref_data[0].len * sizeof(hdset_reg_ref_t));
 
     /*
      * create region reference