[svn-r27930] merge from trunk.

7 files changed, 583 insertions, 2127 deletions

diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt
index 42d9f3d..7631ae8 100644
--- a/tools/h5repack/CMakeLists.txt
+++ b/tools/h5repack/CMakeLists.txt
@@ -21,8 +21,8 @@ set (REPACK_COMMON_SRCS
 )
 
 add_executable (h5repack ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_main.c)
-TARGET_NAMING (h5repack ${LIB_TYPE})
-TARGET_C_PROPERTIES (h5repack ${LIB_TYPE} " " " ")
+TARGET_NAMING (h5repack STATIC)
+TARGET_C_PROPERTIES (h5repack STATIC " " " ")
 target_link_libraries (h5repack  ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
 set_target_properties (h5repack PROPERTIES FOLDER tools)
 
@@ -33,51 +33,49 @@ if (BUILD_TESTING)
   # Add h5Repack test executables
   # --------------------------------------------------------------------
   add_executable (testh5repack_detect_szip ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c)
-  TARGET_NAMING (testh5repack_detect_szip ${LIB_TYPE})
-  TARGET_C_PROPERTIES (testh5repack_detect_szip ${LIB_TYPE} " " " ")
+  TARGET_NAMING (testh5repack_detect_szip STATIC)
+  TARGET_C_PROPERTIES (testh5repack_detect_szip STATIC " " " ")
   target_link_libraries (testh5repack_detect_szip ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET})
   set_target_properties (testh5repack_detect_szip PROPERTIES FOLDER tools)
 
   add_executable (h5repacktest ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repacktst.c)
-  TARGET_NAMING (h5repacktest ${LIB_TYPE})
-  TARGET_C_PROPERTIES (h5repacktest ${LIB_TYPE} " " " ")
+  TARGET_NAMING (h5repacktest STATIC)
+  TARGET_C_PROPERTIES (h5repacktest STATIC " " " ")
   target_link_libraries (h5repacktest  ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET})
   set_target_properties (h5repacktest PROPERTIES FOLDER tools)
 
   #-----------------------------------------------------------------------------
   # If plugin library tests can be tested
   #-----------------------------------------------------------------------------
-  if (BUILD_SHARED_LIBS)
-    set (HDF5_TOOL_PLUGIN_LIB_CORENAME         "dynlibadd")
-    set (HDF5_TOOL_PLUGIN_LIB_NAME             "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TOOL_PLUGIN_LIB_CORENAME}")
-    set (HDF5_TOOL_PLUGIN_LIB_TARGET           ${HDF5_TOOL_PLUGIN_LIB_CORENAME})
-    add_definitions (${HDF_EXTRA_C_FLAGS})
-    INCLUDE_DIRECTORIES (${HDF5_SRC_DIR})
+  set (HDF5_TOOL_PLUGIN_LIB_CORENAME         "dynlibadd")
+  set (HDF5_TOOL_PLUGIN_LIB_NAME             "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TOOL_PLUGIN_LIB_CORENAME}")
+  set (HDF5_TOOL_PLUGIN_LIB_TARGET           ${HDF5_TOOL_PLUGIN_LIB_CORENAME})
+  add_definitions (${HDF_EXTRA_C_FLAGS})
+  INCLUDE_DIRECTORIES (${HDF5_SRC_DIR})
 
-    add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c)
-    TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED " " " ")
-    target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET})
-    H5_SET_LIB_OPTIONS (
-        ${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME}
-        SHARED
-        HDF5_TOOL_PLUGIN_LIB_NAME_RELEASE
-        HDF5_TOOL_PLUGIN_LIB_NAME_DEBUG
-    )
+  add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c)
+  TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED " " " ")
+  target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET})
+  H5_SET_LIB_OPTIONS (
+      ${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME}
+      SHARED
+      HDF5_TOOL_PLUGIN_LIB_NAME_RELEASE
+      HDF5_TOOL_PLUGIN_LIB_NAME_DEBUG
+  )
 
-    # make plugins dir
-    file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins")
-    #-----------------------------------------------------------------------------
-    # Copy plugin library to a plugins folder
-    #-----------------------------------------------------------------------------
-    add_custom_command (
-        TARGET     ${HDF5_TOOL_PLUGIN_LIB_TARGET}
-        POST_BUILD
-        COMMAND    ${CMAKE_COMMAND}
-        ARGS       -E copy_if_different 
+  # make plugins dir
+  file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins")
+  #-----------------------------------------------------------------------------
+  # Copy plugin library to a plugins folder
+  #-----------------------------------------------------------------------------
+  add_custom_command (
+      TARGET     ${HDF5_TOOL_PLUGIN_LIB_TARGET}
+      POST_BUILD
+      COMMAND    ${CMAKE_COMMAND}
+      ARGS       -E copy_if_different 
           "$<TARGET_FILE:${HDF5_TOOL_PLUGIN_LIB_TARGET}>"
           "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${HDF5_TOOL_PLUGIN_LIB_TARGET}>"
-    )
-  endif (BUILD_SHARED_LIBS)
+  )
 
   include (CMakeTests.cmake)
   
@@ -98,8 +96,5 @@ endif (BUILD_TESTING)
 install (
     TARGETS
         h5repack
-    RUNTIME DESTINATION
-        ${HDF5_INSTALL_BIN_DIR}
-    COMPONENT
-        toolsapplications
+    RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT toolsapplications
 )
diff --git a/tools/h5repack/CMakeTests.cmake b/tools/h5repack/CMakeTests.cmake
index efaa6e5..dee97ed 100644
--- a/tools/h5repack/CMakeTests.cmake
+++ b/tools/h5repack/CMakeTests.cmake
@@ -992,16 +992,8 @@
 ##############################################################################
 ###    P L U G I N  T E S T S
 ##############################################################################
-if (BUILD_SHARED_LIBS)
   ADD_H5_UD_TEST (plugin_test 0 h5repack_layout.h5 -v -f UD=257,1,9)
   ADD_H5_UD_TEST (plugin_none 0 h5repack_layout.UD.h5 -v -f NONE)
-else (BUILD_SHARED_LIBS)
-  message (STATUS " **** Plugins libraries must be built as shared libraries **** ")
-  add_test (
-      NAME H5REPACK-plugin
-      COMMAND ${CMAKE_COMMAND} -E echo "SKIP H5PLUGIN TESTING"
-  )
-endif (BUILD_SHARED_LIBS)
 
   if (HDF5_TEST_VFD)
     # Run test with different Virtual File Driver
diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in
deleted file mode 100644
index 6d1bfd6..0000000
--- a/tools/h5repack/Makefile.in
+++ /dev/null
@@ -1,1529 +0,0 @@
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-	install-info install-info-am install-libLTLIBRARIES \
-	install-man install-pdf install-pdf-am install-ps \
-	install-ps-am install-strip installcheck installcheck-am \
-	installdirs maintainer-clean maintainer-clean-generic \
-	mostlyclean mostlyclean-compile mostlyclean-generic \
-	mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am \
-	recheck tags tags-am uninstall uninstall-am \
-	uninstall-binPROGRAMS uninstall-libLTLIBRARIES
-
-
-# List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
-# This tells the Makefiles that these targets are not files to be built but
-# commands that should be executed even if a file with the same name already
-# exists.
-.PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
-        build-tests check-clean check-install check-p check-s check-vfd \
-        install-doc lib progs tests uninstall-doc _exec_check-s _test help
-
-help:
-	@$(top_srcdir)/bin/makehelp
-
-# The h5repack.sh script needs h5repacktst to run first.
-h5repack.sh.chkexe_: h5repacktst.chkexe_
-
-@HAVE_SHARED_CONDITIONAL_TRUE@  # Build it as shared library if configure is enabled for shared library.
-
-@HAVE_SHARED_CONDITIONAL_TRUE@install-exec-hook:
-@HAVE_SHARED_CONDITIONAL_TRUE@	$(RM) $(DESTDIR)$(libdir)/*dynlib*
-
-# lib/progs/tests targets recurse into subdirectories. build-* targets
-# build files in this directory.
-build-lib: $(LIB)
-build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(chk_TESTS)
-
-# General rule for recursive building targets.
-# BUILT_SOURCES contain targets that need to be built before anything else
-# in the directory (e.g., for Fortran type detection)
-lib progs tests check-s check-p :: $(BUILT_SOURCES)
-	@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
-	@for d in X $(SUBDIRS); do                                             \
-	    if test $$d != X && test $$d != .; then                           \
-	        (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;     \
-	    fi;                                                               \
-	done
-
-# General rule for recursive cleaning targets.  Like the rule above,
-# but doesn't require building BUILT_SOURCES.
-check-clean ::
-	@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
-	@for d in X $(SUBDIRS); do                                             \
-	    if test $$d != X && test $$d != .; then                           \
-	        (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;     \
-	    fi;                                                               \
-	done
-
-# Tell Automake to build tests when the user types `make all' (this is
-# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
-# Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
-
-# make install-doc doesn't do anything outside of doc directory, but
-# Makefiles should recognize it.
-# UPDATE: docs no longer reside in this build tree, so this target
-# is depreciated.
-install-doc uninstall-doc:
-	@echo "Nothing to be done."
-
-# clean up files generated by tests so they can be re-run.
-build-check-clean:
-	$(RM) -rf $(CHECK_CLEANFILES)
-
-# run check-clean whenever mostlyclean is run
-mostlyclean-local: build-check-clean
-
-# check-install is just a synonym for installcheck
-check-install: installcheck
-
-# Run each test in order, passing $(TEST_FLAGS) to the program.
-# Since tests are done in a shell loop, "make -i" does apply inside it.
-# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
-# The timestamps give a rough idea how much time the tests use.
-#
-# Note that targets in chk_TESTS (defined above) will be built when the user
-# types 'make tests' or 'make check', but only programs in TEST_PROG,
-# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
-check-TESTS: test
-
-test _test:
-	@$(MAKE) build-check-s
-	@$(MAKE) build-check-p
-
-# Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
-	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
-	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@$(MAKE) $(AM_MAKEFLAGS) _exec_check-s
-	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
-	    echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH)
-
-# The dummy.chkexe here prevents the target from being
-# empty if there are no tests in the current directory.
-# $${log} is the log file.
-# $${tname} is the name of test.
-$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_:
-	@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \
-	   tname=$(@:.chkexe_=)$(EXEEXT);\
-	   log=$(@:.chkexe_=.chklog); \
-	   echo "============================"; \
-	   if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
-	      echo "No need to test $${tname} again."; \
-	   else \
-	      echo "============================" > $${log}; \
-	      if test "X$(FORTRAN_API)" = "Xyes"; then \
-	         echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
-	      else \
-	         echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
-	      echo "============================" >> $${log}; \
-	      srcdir="$(srcdir)" \
-	         $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \
-	         && touch $(@:.chkexe_=.chkexe) || \
-	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	fi
-
-# The dummysh.chkexe here prevents the target from being
-# empty if there are no tests in the current directory.
-# $${log} is the log file.
-# $${tname} is the name of test.
-$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
-	@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \
-	   cmd=$(@:.chkexe_=);\
-	   tname=`basename $$cmd`;\
-	   chkname=`basename $(@:.chkexe_=.chkexe)`;\
-	   log=`basename $(@:.chkexe_=.chklog)`; \
-	   echo "============================"; \
-	   if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
-	      echo "No need to test $${tname} again."; \
-	   else \
-	      echo "============================" > $${log}; \
-	      if test "X$(FORTRAN_API)" = "Xyes"; then \
-	         echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      else \
-	         echo "Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
-	      echo "============================" >> $${log}; \
-	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
-	      srcdir="$(srcdir)" \
-	         $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
-	         && touch $${chkname} || \
-	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	   echo "============================"; \
-	fi
-
-# Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@if test -n "$(TEST_PROG_PARA)"; then                                \
-	    echo "**** Hint ****";                                            \
-	    echo "Parallel test files reside in the current directory"        \
-	         "by default.";                                               \
-	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
-	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
-	    echo "    export HDF5_PARAPREFIX";                                \
-	    echo "    make check";                                            \
-	    echo "**** end of Hint ****";                                     \
-	fi
-	@for test in $(TEST_PROG_PARA) dummy; do                             \
-	   if test $$test != dummy; then                                      \
-	      $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
-	      RUNEXEC="$(RUNPARALLEL)" || exit 1; \
-	   fi;                                                                \
-	done
-	@for test in $(TEST_SCRIPT_PARA) dummy; do                           \
-	  if test $$test != dummy; then                                      \
-	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
-	  fi;                                                                 \
-	done
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	    echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-# Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
-	@for vfd in $(VFD_LIST) dummy; do                                     \
-	    if test $$vfd != dummy; then                                      \
-	        echo "============================";                          \
-	        echo "Testing Virtual File Driver $$vfd";                     \
-	        echo "============================";                          \
-	        $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1;                \
-	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
-	    fi;                                                               \
-	done
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in
index 4a32491..1796151 100644
--- a/tools/h5repack/h5repack.sh.in
+++ b/tools/h5repack/h5repack.sh.in
@@ -18,7 +18,7 @@
 # Modification:
 #  Pedro Vicente Nunes, 11/15/2006
 #  Added $FILEN variables for file names
-#   
+#
 
 srcdir=@srcdir@
 
@@ -32,7 +32,7 @@ EXIT_FAILURE=1
 H5REPACK=h5repack               # The tool name
 H5REPACK_BIN=`pwd`/$H5REPACK    # The path of the tool binary
 
-H5DIFF=../h5diff/h5diff         # The h5diff tool name 
+H5DIFF=../h5diff/h5diff         # The h5diff tool name
 H5DIFF_BIN=`pwd`/$H5DIFF        # The path of the h5diff tool binary
 
 H5DUMP=../h5dump/h5dump         # The h5dump tool name
@@ -45,8 +45,8 @@ DIRNAME='dirname'
 LS='ls'
 AWK='awk'
 
-H5DETECTSZIP=testh5repack_detect_szip              
-H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP    
+H5DETECTSZIP=testh5repack_detect_szip
+H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP
 
 
 nerrors=0
@@ -151,7 +151,7 @@ COPY_TESTFILES_TO_TESTDIR()
     	        $CP -f $tstfile $TESTDIR
                 if [ $? -ne 0 ]; then
                     echo "Error: FAILED to copy $tstfile ."
-                
+
                     # Comment out this to CREATE expected file
                     exit $EXIT_FAILURE
                 fi
@@ -203,12 +203,12 @@ SKIP() {
 
 # Call the h5diff tool
 #
-DIFFTEST() 
+DIFFTEST()
 {
     VERIFY h5diff output $@
     (
         cd $TESTDIR
-        $RUNSERIAL $H5DIFF_BIN -q  "$@" 
+        $RUNSERIAL $H5DIFF_BIN -q  "$@"
     )
     RET=$?
     if [ $RET != 0 ] ; then
@@ -217,7 +217,7 @@ DIFFTEST()
     else
          echo " PASSED"
     fi
-        
+
 }
 
 # Call h5repack
@@ -225,7 +225,7 @@ DIFFTEST()
 
 
 # call TOOLTEST_MAIN and delete $output file
-TOOLTEST() 
+TOOLTEST()
 {
     echo $@
     infile=$2
@@ -251,7 +251,7 @@ TOOLTEST()
 }
 
 #------------------------------------------
-# Verifying layouts of a dataset 
+# Verifying layouts of a dataset
 VERIFY_LAYOUT_DSET()
 {
     layoutfile=layout-$1.$2
@@ -263,9 +263,9 @@ VERIFY_LAYOUT_DSET()
     shift
     shift
     shift
-   
+
     TESTING  $H5REPACK $@
-    ( 
+    (
         cd $TESTDIR
         $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
     )
@@ -277,7 +277,7 @@ VERIFY_LAYOUT_DSET()
         echo " PASSED"
         DIFFTEST $infile $outfile
     fi
-    
+
     #---------------------------------
     # check the layout from a dataset
     VERIFY  "a dataset layout"
@@ -309,9 +309,9 @@ VERIFY_LAYOUT_ALL()
     shift
     shift
     shift
-    
+
     TESTING  $H5REPACK $@
-    ( 
+    (
         cd $TESTDIR
         $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
     )
@@ -323,8 +323,8 @@ VERIFY_LAYOUT_ALL()
         echo " PASSED"
         DIFFTEST $infile $outfile
     fi
-    
-    
+
+
     #---------------------------------
     # check the layout from a dataset
     # check if the other layouts still exsit
@@ -351,7 +351,7 @@ VERIFY_LAYOUT_ALL()
                     echo " PASSED"
                 fi
             fi
-        else    
+        else
             # if COMPACT
             if [ $expectlayout = "COMPACT" ]; then
                 TESTING $H5DUMP_BIN -pH $outfile
@@ -403,7 +403,7 @@ VERIFY_LAYOUT_ALL()
 
 # same as TOOLTEST, but it uses the old syntax -i input_file -o output_file
 #
-TOOLTEST0() 
+TOOLTEST0()
 {
     infile=$2
     outfile=out-$1.$2
@@ -431,7 +431,7 @@ TOOLTEST0()
 # same as TOOLTEST, but it uses without -i -o options
 # used to test the family driver, where these files reside
 #
-TOOLTEST1() 
+TOOLTEST1()
 {
     infile=$2
     outfile=out-$1.$2
@@ -454,11 +454,11 @@ TOOLTEST1()
     fi
     rm -f $outfile
 }
-          
+
 # This is same as TOOLTEST() with comparing display output
 # from -v option
 #
-TOOLTESTV() 
+TOOLTESTV()
 {
     expect="$TESTDIR/$2.tst"
     actual="$TESTDIR/`basename $2 .ddl`.out"
@@ -468,7 +468,7 @@ TOOLTESTV()
     outfile=out-$1.$2
     shift
     shift
-    
+
     # Run test.
     TESTING $H5REPACK $@
     (
@@ -497,15 +497,15 @@ TOOLTESTV()
      nerrors="`expr $nerrors + 1`"
      test yes = "$verbose" && diff -c $expect $actual |sed 's/^/    /'
     fi
-    
+
    rm -f $actual $actual_err
    rm -f $outfile
 }
-          
+
 # This is same as TOOLTESTV() with comparing h5dump output
 # from -pH option
 #
-TOOLTEST_DUMP() 
+TOOLTEST_DUMP()
 {
     infile=$2
     outfile=out-$1.$2
@@ -515,7 +515,7 @@ TOOLTEST_DUMP()
 
     shift
     shift
-    
+
     # Run test.
     TESTING $H5REPACK $@
     (
@@ -531,12 +531,12 @@ TOOLTEST_DUMP()
      VERIFY h5dump output $@
      (
         cd $TESTDIR
-        $RUNSERIAL $H5DUMP_BIN -pH $outfile 
+        $RUNSERIAL $H5DUMP_BIN -pH $outfile
      ) >$actual 2>$actual_err
      cat $actual_err >> $actual
 
      RET=$?
-          
+
     fi
 
     if cmp -s $expect $actual; then
@@ -547,7 +547,7 @@ TOOLTEST_DUMP()
      nerrors="`expr $nerrors + 1`"
      test yes = "$verbose" && diff -c $expect $actual |sed 's/^/    /'
     fi
-    
+
    rm -f $actual $actual_err
    rm -f $outfile
 }
@@ -618,7 +618,7 @@ TOOLTEST_META()
 	echo "*FAILED*"
         nerrors="`expr $nerrors + 1`"
     fi
-    
+
     rm -f $outfile
 }
 # ADD_HELP_TEST
@@ -648,7 +648,7 @@ TOOLTEST_HELP() {
       echo "    Expected output (*.txt) differs from actual output (*.out)"
       nerrors="`expr $nerrors + 1`"
     fi
-    
+
     # Clean up output file
     if test -z "$HDF5_NOCLEANUP"; then
      rm -f $actual $actual_err
@@ -674,28 +674,28 @@ STDOUT_FILTER() {
 # Each run generates "<file>.out.h5" and the tool h5diff is used to
 # compare the input and output files
 #
-# the tests are the same as the program h5repacktst, but run from the CLI 
+# the tests are the same as the program h5repacktst, but run from the CLI
 #
 
 # See which filters are usable (and skip tests for filters we
 # don't have).  Do this by searching H5pubconf.h to see which
 # filters are defined.
 
-# detect whether the encoder is present. 
+# detect whether the encoder is present.
 USE_FILTER_SZIP_ENCODER="no";
 if test $USE_FILTER_SZIP = "yes"; then
 USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN`
 fi
 
 ##############################################################################
-###			  T H E   T E S T S                               
+###			  T H E   T E S T S
 ##############################################################################
 # prepare for test
 COPY_TESTFILES_TO_TESTDIR
 
 TOOLTEST_HELP h5repack-help.txt -h
 
-# copy files (these files have no filters) 
+# copy files (these files have no filters)
 TOOLTEST fill h5repack_fill.h5
 TOOLTEST objs h5repack_objs.h5
 TOOLTEST attr h5repack_attr.h5
@@ -719,8 +719,8 @@ if test  $USE_FILTER_DEFLATE != "yes" ; then
 else
  TOOLTEST gzip_individual $arg
 fi
-  
-# gzip for all 
+
+# gzip for all
 arg="h5repack_layout.h5 -f GZIP=1"
 if test  $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
@@ -733,7 +733,7 @@ arg="h5repack_layout.h5 -f dset2:SZIP=8,EC  -l dset2:CHUNK=20x10"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
  SKIP $arg
 else
- TOOLTEST szip_individual $arg 
+ TOOLTEST szip_individual $arg
 fi
 
 # szip for all
@@ -741,18 +741,18 @@ arg="h5repack_layout.h5 -f SZIP=8,NN"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
  SKIP $arg
 else
- TOOLTEST szip_all $arg 
+ TOOLTEST szip_all $arg
 fi
 
 # shuffle with individual object
 arg="h5repack_layout.h5 -f dset2:SHUF  -l dset2:CHUNK=20x10"
-TOOLTEST shuffle_individual $arg 
-  
+TOOLTEST shuffle_individual $arg
+
 
 # shuffle for all
 arg="h5repack_layout.h5 -f SHUF"
 TOOLTEST shuffle_all $arg
-  
+
 # fletcher32  with individual object
 arg="h5repack_layout.h5 -f dset2:FLET  -l dset2:CHUNK=20x10"
 TOOLTEST fletcher_individual $arg
@@ -777,7 +777,7 @@ else
  # compare output
  TOOLTESTV gzip_verbose_filters $arg
 fi
-  
+
 ###########################################################
 # the following tests assume the input files have filters
 ###########################################################
@@ -789,7 +789,7 @@ if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
 else
  TOOLTEST szip_copy $arg
 fi
-  
+
 # szip remove
 arg="h5repack_szip.h5 --filter=dset_szip:NONE"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
@@ -797,7 +797,7 @@ if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
 else
  TOOLTEST szip_remove $arg
 fi
-  
+
 # deflate copy
 arg="h5repack_deflate.h5"
 if test $USE_FILTER_DEFLATE != "yes" ; then
@@ -813,7 +813,7 @@ if test $USE_FILTER_DEFLATE != "yes" ; then
 else
  TOOLTEST deflate_remove $arg
 fi
-    
+
 # shuffle copy
 arg="h5repack_shuffle.h5"
 TOOLTEST shuffle_copy $arg
@@ -868,14 +868,14 @@ arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN"
 if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST deflate_convert $arg 
+ TOOLTEST deflate_convert $arg
 fi
 
 arg="h5repack_szip.h5 -f dset_szip:GZIP=1"
 if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes"  -o $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
- TOOLTEST szip_convert $arg 
+ TOOLTEST szip_convert $arg
 fi
 
 
@@ -890,9 +890,9 @@ fi
 #file
 arg="h5repack_layout.h5 -e h5repack.info"
 if test $USE_FILTER_DEFLATE != "yes" ; then
- SKIP $arg 
+ SKIP $arg
 else
- TOOLTEST deflate_file $arg 
+ TOOLTEST deflate_file $arg
 fi
 
 #########################################################
@@ -937,18 +937,18 @@ VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -
 
 VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA
 
-#--------------------------------------------------------------------------- 
-# Test file contains chunked datasets (need multiple dsets) with 
+#---------------------------------------------------------------------------
+# Test file contains chunked datasets (need multiple dsets) with
 # unlimited max dims.   (HDFFV-7933)
 # Use first dset to test.
 #---------------------------------------------------------------------------
 # chunk to chunk - specify chunk dim bigger than any current dim
 VERIFY_LAYOUT_DSET chunk2chunk h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300
 
-# chunk to contiguous 
+# chunk to contiguous
 VERIFY_LAYOUT_DSET chunk2conti h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI
 
-# chunk to compact - convert big dataset (should be > 64k) for this purpose, 
+# chunk to compact - convert big dataset (should be > 64k) for this purpose,
 # should remain as original layout (chunk)
 VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA
 
@@ -956,7 +956,7 @@ VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk
 # Test -f for some specific cases. Chunked dataset with unlimited max dims.
 # (HDFFV-8012)
 #--------------------------------------------------------------------------
-# - should not fail 
+# - should not fail
 # - should not change max dims from unlimit
 
 # chunk dim is bigger than dataset dim. ( dset size < 64k )
@@ -972,14 +972,14 @@ VERIFY_LAYOUT_DSET error3 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f ch
 TOOLTEST error4 h5repack_layout3.h5 -f NONE
 
 #--------------------------------------------------------------------------
-# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset 
+# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset
 # (dset size < 64K) and with unlimited max dims on a condition as follow.
 # (HDFFV-8214)
 #--------------------------------------------------------------------------
 
 # chunk dim is bigger than dataset dim. should succeed.
 VERIFY_LAYOUT_DSET ckdim_biger h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI
-# chunk dim is smaller than dataset dim. should succeed.  
+# chunk dim is smaller than dataset dim. should succeed.
 VERIFY_LAYOUT_DSET ckdim_smaller h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI
 
 
@@ -1022,7 +1022,7 @@ if test $USE_FILTER_DEFLATE != "yes" ; then
  SKIP $arg
 else
  TOOLTEST0 old_style_layout_short_switches $arg
-fi 
+fi
 
 # add a userblock to file
 arg="h5repack_objs.h5 -u ublock.bin -b 2048"
@@ -1049,17 +1049,17 @@ TOOLTEST1 family tfamily%05d.h5
 TOOLTEST bug1814 h5repack_refs.h5
 
 # test attribute with various references (bug1797 / HDFFV-5932)
-# the references in attribute of compund or vlen datatype 
-TOOLTEST HDFFV-5932 h5repack_attr_refs.h5 
+# the references in attribute of compund or vlen datatype
+TOOLTEST HDFFV-5932 h5repack_attr_refs.h5
 
-# Add test for memory leak in attirbute. This test is verified by CTEST.   
-# 1. leak from vlen string  
+# Add test for memory leak in attirbute. This test is verified by CTEST.
+# 1. leak from vlen string
 # 2. leak from compound type without reference member
 # (HDFFV-7840, )
 # Note: this test is experimental for sharing test file among tools
 TOOLTEST HDFFV-7840 h5diff_attr1.h5
 
-# tests for metadata block size option 
+# tests for metadata block size option
 TOOLTEST_META meta_short h5repack_layout.h5 -M 8192
 TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192
 
diff --git a/tools/h5repack/h5repack_parse.c b/tools/h5repack/h5repack_parse.c
index 8a297a7..1d71c13 100644
--- a/tools/h5repack/h5repack_parse.c
+++ b/tools/h5repack/h5repack_parse.c
@@ -47,473 +47,473 @@
 
 
 obj_list_t* parse_filter(const char *str,
-                         int *n_objs,
-                         filter_info_t *filt,
-                         pack_opt_t *options,
-                         int *is_glb)
+        int *n_objs,
+        filter_info_t *filt,
+        pack_opt_t *options,
+        int *is_glb)
 {
-	unsigned    i, u;
-	char        c;
-	size_t      len=HDstrlen(str);
-	int         j, m, n, k, l, p, r, q, end_obj=-1, no_param=0;
-	char        sobj[MAX_NC_NAME];
-	char        scomp[10];
-	char        stype[5];
-	char        smask[3];
-	obj_list_t* obj_list=NULL;
-	unsigned    pixels_per_block;
-
-
-	/* initialize compression  info */
-	HDmemset(filt,0,sizeof(filter_info_t));
-	*is_glb = 0;
-
-	/* check for the end of object list and number of objects */
-	for ( i = 0, n = 0; i < len; i++)
-	{
-		c = str[i];
-		if ( c==':' )
-		{
-			end_obj=i;
-		}
-		if ( c==',' )
-		{
-			n++;
-		}
-	}
-
-	if (end_obj==-1) /* missing : */
-	{
-		/* apply to all objects */
-		options->all_filter=1;
-		*is_glb = 1;
-	}
-
-	n++;
-	obj_list = (obj_list_t*) HDmalloc(n*sizeof(obj_list_t));
-	if (obj_list==NULL)
-	{
-		error_msg("could not allocate object list\n");
-		return NULL;
-	}
-	*n_objs=n;
-
-	/* get object list */
-	for ( j = 0, k = 0, n = 0; j < end_obj; j++, k++)
-	{
-		c = str[j];
-		sobj[k] = c;
-		if ( c==',' || j==end_obj-1)
-		{
-			if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0';
-			HDstrcpy(obj_list[n].obj,sobj);
-			HDmemset(sobj,0,sizeof(sobj));
-			n++;
-			k=-1;
-		}
-	}
-	/* nothing after : */
-	if (end_obj+1==(int)len)
-	{
-		if (obj_list) HDfree(obj_list);
-		error_msg("input Error: Invalid compression type in <%s>\n",str);
-		HDexit(EXIT_FAILURE);
-	}
-
-
-	/* get filter additional parameters */
-	m=0;
-	for ( i=end_obj+1, k=0, j=0; i<len; i++,k++)
-	{
-		c = str[i];
-		scomp[k]=c;
-		if ( c=='=' || i==len-1)
-		{
-			if ( c=='=') /*one more parameter */
-			{
-				scomp[k]='\0';     /*cut space */
-
-				/*-------------------------------------------------------------------------
-				 * H5Z_FILTER_SZIP
-				 * szip has the format SZIP=<pixels per block,coding>
-				 * pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN'
-				 * example SZIP=8,NN
-				 *-------------------------------------------------------------------------
-				 */
-				if (HDstrcmp(scomp,"SZIP")==0)
-				{
-					l=-1; /* mask index check */
-					for ( m=0,u=i+1; u<len; u++,m++)
-					{
-						if (str[u]==',')
-						{
-							stype[m]='\0'; /* end digit of szip */
-							l=0;  /* start EC or NN search */
-							u++;  /* skip ',' */
-						}
-						c = str[u];
-						if (!isdigit(c) && l==-1)
-						{
-							if (obj_list) HDfree(obj_list);
-							error_msg("compression parameter not digit in <%s>\n",str);
-							HDexit(EXIT_FAILURE);
-						}
-						if (l==-1)
-							stype[m]=c;
-						else
-						{
-							smask[l]=c;
-							l++;
-							if (l==2)
-							{
-								smask[l]='\0';
-								i=len-1; /* end */
-								(*n_objs)--; /* we counted an extra ',' */
-								if (HDstrcmp(smask,"NN")==0)
-									filt->cd_values[j++]=H5_SZIP_NN_OPTION_MASK;
-								else if (HDstrcmp(smask,"EC")==0)
-									filt->cd_values[j++]=H5_SZIP_EC_OPTION_MASK;
-								else
-								{
-									error_msg("szip mask must be 'NN' or 'EC' \n");
-									HDexit(EXIT_FAILURE);
-								}
-
-
-							}
-						}
-
-					}  /* u */
-				} /*if */
-
-				/*-------------------------------------------------------------------------
-				 * H5Z_FILTER_SCALEOFFSET
-				 * scaleoffset has the format SOFF=<scale_factor,scale_type>
-				 * scale_type can be
-				 *   integer datatype, H5Z_SO_INT (IN)
-				 *   float datatype using D-scaling method, H5Z_SO_FLOAT_DSCALE  (DS)
-				 *   float datatype using E-scaling method, H5Z_SO_FLOAT_ESCALE  (ES) , not yet implemented
-				 * for integer datatypes, scale_factor denotes Minimum Bits
-				 * for float datatypes, scale_factor denotes decimal scale factor
-				 *  examples
-				 *  SOFF=31,IN
-				 *  SOFF=3,DF
-				 *-------------------------------------------------------------------------
-				 */
-
-				else if (HDstrcmp(scomp,"SOFF")==0)
-				{
-					l=-1; /* mask index check */
-					for ( m=0,u=i+1; u<len; u++,m++)
-					{
-						if (str[u]==',')
-						{
-							stype[m]='\0'; /* end digit */
-							l=0;  /* start 'IN' , 'DS', or 'ES' search */
-							u++;  /* skip ',' */
-						}
-						c = str[u];
-						if (!isdigit(c) && l==-1)
-						{
-							if (obj_list) HDfree(obj_list);
-							error_msg("compression parameter is not a digit in <%s>\n",str);
-							HDexit(EXIT_FAILURE);
-						}
-						if (l==-1)
-							stype[m]=c;
-						else
-						{
-							smask[l]=c;
-							l++;
-							if (l==2)
-							{
-								smask[l]='\0';
-								i=len-1; /* end */
-								(*n_objs)--; /* we counted an extra ',' */
-								if (HDstrcmp(smask,"IN")==0)
-									filt->cd_values[j++]=H5Z_SO_INT;
-								else if (HDstrcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE)
-									filt->cd_values[j++]=H5Z_SO_FLOAT_DSCALE;
-								else
-								{
-									error_msg("scale type must be 'IN' or 'DS' \n");
-									HDexit(EXIT_FAILURE);
-								}
-
-							}
-						}
-
-					}  /* u */
-				} /*if */
-				/*-------------------------------------------------------------------------
-				 * User Defined
-				 *   has the format UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]>
-				 *  BZIP2 example
-				 *  UD=307,1,9
-				 *-------------------------------------------------------------------------
-				 */
-
-				else if (HDstrcmp(scomp,"UD")==0)
-				{
-					l=-1; /* filter number index check */
-					p=-1; /* CD_VAL count check */
-					r=-1; /* CD_VAL check */
-					for ( m=0,q=0,u=i+1; u<len; u++,m++,q++)
-					{
-						if (str[u]==',')
-						{
-							stype[q]='\0'; /* end digit */
-							if (l==-1)
-							{
-								filt->filtn=atoi(stype);
-								l=0;
-							}
-							else if (p==-1)
-							{
-								filt->cd_nelmts=atoi(stype);
-								p=0;
-							}
-							else
-								r=0;
-							q=0;
-							u++;  /* skip ',' */
-						}
-						c = str[u];
-						if (!isdigit(c) && l==-1)
-						{
-							if (obj_list) HDfree(obj_list);
-							error_msg("filter number parameter is not a digit in <%s>\n",str);
-							HDexit(EXIT_FAILURE);
-						}
-						stype[q]=c;
-						if (l==0 && p==0)
-						{
-							if (r==0)
-								filt->cd_values[j++]=atoi(stype);
-						}
-
-					}  /* u */
-
-					stype[q]='\0';
-				} /*if */
-
-
-				/*-------------------------------------------------------------------------
-				 * all other filters
-				 *-------------------------------------------------------------------------
-				 */
-
-				else
-				{
-					/* here we could have 1 or 2 digits  */
-					for ( m=0,u=i+1; u<len; u++,m++)
-					{
-						c = str[u];
-						if (!isdigit(c)){
-							if (obj_list) HDfree(obj_list);
-							error_msg("compression parameter is not a digit in <%s>\n",str);
-							HDexit(EXIT_FAILURE);
-						}
-						stype[m]=c;
-					} /* u */
-
-					stype[m]='\0';
-				} /*if */
-
-
-
-				filt->cd_values[j++]=atoi(stype);
-				i+=m; /* jump */
-			}
-			else if (i==len-1)
-			{ /*no more parameters */
-				scomp[k+1]='\0';
-				no_param=1;
-			}
-
-			/*-------------------------------------------------------------------------
-			 * translate from string to filter symbol
-			 *-------------------------------------------------------------------------
-			 */
-
-			/*-------------------------------------------------------------------------
-			 * H5Z_FILTER_NONE
-			 *-------------------------------------------------------------------------
-			 */
-			if (HDstrcmp(scomp,"NONE")==0)
-			{
-				filt->filtn=H5Z_FILTER_NONE;
-				filt->cd_nelmts = 0;
-			}
-
-			/*-------------------------------------------------------------------------
-			 * H5Z_FILTER_DEFLATE
-			 *-------------------------------------------------------------------------
-			 */
-			else if (HDstrcmp(scomp,"GZIP")==0)
-			{
-				filt->filtn=H5Z_FILTER_DEFLATE;
-				filt->cd_nelmts = 1;
-				if (no_param)
-				{ /*no more parameters, GZIP must have parameter */
-					if (obj_list) HDfree(obj_list);
-					error_msg("missing compression parameter in <%s>\n",str);
-					HDexit(EXIT_FAILURE);
-				}
-			}
-
-			/*-------------------------------------------------------------------------
-			 * H5Z_FILTER_SZIP
-			 *-------------------------------------------------------------------------
-			 */
-			else if (HDstrcmp(scomp,"SZIP")==0)
-			{
-				filt->filtn=H5Z_FILTER_SZIP;
-				filt->cd_nelmts = 2;
-				if (no_param)
-				{ /*no more parameters, SZIP must have parameter */
-					if (obj_list) HDfree(obj_list);
-					error_msg("missing compression parameter in <%s>\n",str);
-					HDexit(EXIT_FAILURE);
-				}
-			}
-
-			/*-------------------------------------------------------------------------
-			 * H5Z_FILTER_SHUFFLE
-			 *-------------------------------------------------------------------------
-			 */
-			else if (HDstrcmp(scomp,"SHUF")==0)
-			{
-				filt->filtn=H5Z_FILTER_SHUFFLE;
-				filt->cd_nelmts = 0;
-				if (m>0)
-				{ /*shuffle does not have parameter */
-					if (obj_list) HDfree(obj_list);
-					error_msg("extra parameter in SHUF <%s>\n",str);
-					HDexit(EXIT_FAILURE);
-				}
-			}
-			/*-------------------------------------------------------------------------
-			 * H5Z_FILTER_FLETCHER32
-			 *-------------------------------------------------------------------------
-			 */
-			else if (HDstrcmp(scomp,"FLET")==0)
-			{
-				filt->filtn=H5Z_FILTER_FLETCHER32;
-				filt->cd_nelmts = 0;
-				if (m>0)
-				{ /*shuffle does not have parameter */
-					if (obj_list) HDfree(obj_list);
-					error_msg("extra parameter in FLET <%s>\n",str);
-					HDexit(EXIT_FAILURE);
-				}
-			}
-			/*-------------------------------------------------------------------------
-			 * H5Z_FILTER_NBIT
-			 *-------------------------------------------------------------------------
-			 */
-			else if (HDstrcmp(scomp,"NBIT")==0)
-			{
-				filt->filtn=H5Z_FILTER_NBIT;
-				filt->cd_nelmts = 0;
-				if (m>0)
-				{ /*nbit does not have parameter */
-					if (obj_list) HDfree(obj_list);
-					error_msg("extra parameter in NBIT <%s>\n",str);
-					HDexit(EXIT_FAILURE);
-				}
-			}
-			/*-------------------------------------------------------------------------
-			 * H5Z_FILTER_SCALEOFFSET
-			 *-------------------------------------------------------------------------
-			 */
-			else if (HDstrcmp(scomp,"SOFF")==0)
-			{
-				filt->filtn=H5Z_FILTER_SCALEOFFSET;
-				filt->cd_nelmts = 2;
-				if (no_param)
-				{ /*no more parameters, SOFF must have parameter */
-					if (obj_list) HDfree(obj_list);
-					error_msg("missing compression parameter in <%s>\n",str);
-					HDexit(EXIT_FAILURE);
-				}
-			}
-			/*-------------------------------------------------------------------------
-			 * User Defined Filter
-			 *-------------------------------------------------------------------------
-			 */
-			else if (HDstrcmp(scomp,"UD")==0)
-			{
-				if (filt->cd_nelmts != j)
-				{ /* parameters does not match count */
-					if (obj_list) HDfree(obj_list);
-					error_msg("incorrect number of compression parameters in <%s>\n",str);
-					HDexit(EXIT_FAILURE);
-				}
-			}
-			else {
-				if (obj_list) HDfree(obj_list);
-				error_msg("invalid filter type in <%s>\n",str);
-				HDexit(EXIT_FAILURE);
-			}
-		}
-	} /*i*/
-
-	/*-------------------------------------------------------------------------
-	 * check valid parameters
-	 *-------------------------------------------------------------------------
-	 */
-
-	switch (filt->filtn)
-	{
-
-	/*-------------------------------------------------------------------------
-	 * H5Z_FILTER_DEFLATE
-	 *-------------------------------------------------------------------------
-	 */
-
-	case H5Z_FILTER_DEFLATE:
-		if (filt->cd_values[0]>9 )
-		{
-			if (obj_list) HDfree(obj_list);
-			error_msg("invalid compression parameter in <%s>\n",str);
-			HDexit(EXIT_FAILURE);
-		}
-		break;
-
-		/*-------------------------------------------------------------------------
-		 * H5Z_FILTER_SZIP
-		 *-------------------------------------------------------------------------
-		 */
-
-	case H5Z_FILTER_SZIP:
-		pixels_per_block=filt->cd_values[0];
-		if ((pixels_per_block%2)==1)
-		{
-			if (obj_list) HDfree(obj_list);
-			error_msg("pixels_per_block is not even in <%s>\n",str);
-			HDexit(EXIT_FAILURE);
-		}
-		if (pixels_per_block>H5_SZIP_MAX_PIXELS_PER_BLOCK)
-		{
-			if (obj_list) HDfree(obj_list);
-			error_msg("pixels_per_block is too large in <%s>\n",str);
-			HDexit(EXIT_FAILURE);
-		}
-		if ( (HDstrcmp(smask,"NN")!=0) && (HDstrcmp(smask,"EC")!=0) )
-		{
-			if (obj_list) HDfree(obj_list);
-			error_msg("szip mask must be 'NN' or 'EC' \n");
-			HDexit(EXIT_FAILURE);
-		}
-		break;
-	default:
-		break;
-
-
-	};
-
-	return obj_list;
+    unsigned    i, u;
+    char        c;
+    size_t      len=HDstrlen(str);
+    int         j, m, n, k, l, p, r, q, end_obj=-1, no_param=0;
+    char        sobj[MAX_NC_NAME];
+    char        scomp[10];
+    char        stype[6];
+    char        smask[3];
+    obj_list_t* obj_list=NULL;
+    unsigned    pixels_per_block;
+
+
+    /* initialize compression  info */
+    HDmemset(filt,0,sizeof(filter_info_t));
+    *is_glb = 0;
+
+    /* check for the end of object list and number of objects */
+    for ( i = 0, n = 0; i < len; i++)
+    {
+        c = str[i];
+        if ( c==':' )
+        {
+            end_obj=i;
+        }
+        if ( c==',' )
+        {
+            n++;
+        }
+    }
+
+    if (end_obj==-1) /* missing : */
+    {
+        /* apply to all objects */
+        options->all_filter=1;
+        *is_glb = 1;
+    }
+
+    n++;
+    obj_list = (obj_list_t*) HDmalloc(n*sizeof(obj_list_t));
+    if (obj_list==NULL)
+    {
+        error_msg("could not allocate object list\n");
+        return NULL;
+    }
+    *n_objs=n;
+
+    /* get object list */
+    for ( j = 0, k = 0, n = 0; j < end_obj; j++, k++)
+    {
+        c = str[j];
+        sobj[k] = c;
+        if ( c==',' || j==end_obj-1)
+        {
+            if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0';
+            HDstrcpy(obj_list[n].obj,sobj);
+            HDmemset(sobj,0,sizeof(sobj));
+            n++;
+            k=-1;
+        }
+    }
+    /* nothing after : */
+    if (end_obj+1==(int)len)
+    {
+        if (obj_list) HDfree(obj_list);
+        error_msg("input Error: Invalid compression type in <%s>\n",str);
+        HDexit(EXIT_FAILURE);
+    }
+
+
+    /* get filter additional parameters */
+    m=0;
+    for ( i=end_obj+1, k=0, j=0; i<len; i++,k++)
+    {
+        c = str[i];
+        scomp[k]=c;
+        if ( c=='=' || i==len-1)
+        {
+            if ( c=='=') /*one more parameter */
+            {
+                scomp[k]='\0';     /*cut space */
+
+                /*-------------------------------------------------------------------------
+                 * H5Z_FILTER_SZIP
+                 * szip has the format SZIP=<pixels per block,coding>
+                 * pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN'
+                 * example SZIP=8,NN
+                 *-------------------------------------------------------------------------
+                 */
+                if (HDstrcmp(scomp,"SZIP")==0)
+                {
+                    l=-1; /* mask index check */
+                    for ( m=0,u=i+1; u<len; u++,m++)
+                    {
+                        if (str[u]==',')
+                        {
+                            stype[m]='\0'; /* end digit of szip */
+                            l=0;  /* start EC or NN search */
+                            u++;  /* skip ',' */
+                        }
+                        c = str[u];
+                        if (!isdigit(c) && l==-1)
+                        {
+                            if (obj_list) HDfree(obj_list);
+                            error_msg("compression parameter not digit in <%s>\n",str);
+                            HDexit(EXIT_FAILURE);
+                        }
+                        if (l==-1)
+                            stype[m]=c;
+                        else
+                        {
+                            smask[l]=c;
+                            l++;
+                            if (l==2)
+                            {
+                                smask[l]='\0';
+                                i=len-1; /* end */
+                                (*n_objs)--; /* we counted an extra ',' */
+                                if (HDstrcmp(smask,"NN")==0)
+                                    filt->cd_values[j++]=H5_SZIP_NN_OPTION_MASK;
+                                else if (HDstrcmp(smask,"EC")==0)
+                                    filt->cd_values[j++]=H5_SZIP_EC_OPTION_MASK;
+                                else
+                                {
+                                    error_msg("szip mask must be 'NN' or 'EC' \n");
+                                    HDexit(EXIT_FAILURE);
+                                }
+
+
+                            }
+                        }
+
+                    }  /* u */
+                } /*if */
+
+                /*-------------------------------------------------------------------------
+                 * H5Z_FILTER_SCALEOFFSET
+                 * scaleoffset has the format SOFF=<scale_factor,scale_type>
+                 * scale_type can be
+                 *   integer datatype, H5Z_SO_INT (IN)
+                 *   float datatype using D-scaling method, H5Z_SO_FLOAT_DSCALE  (DS)
+                 *   float datatype using E-scaling method, H5Z_SO_FLOAT_ESCALE  (ES) , not yet implemented
+                 * for integer datatypes, scale_factor denotes Minimum Bits
+                 * for float datatypes, scale_factor denotes decimal scale factor
+                 *  examples
+                 *  SOFF=31,IN
+                 *  SOFF=3,DF
+                 *-------------------------------------------------------------------------
+                 */
+
+                else if (HDstrcmp(scomp,"SOFF")==0)
+                {
+                    l=-1; /* mask index check */
+                    for ( m=0,u=i+1; u<len; u++,m++)
+                    {
+                        if (str[u]==',')
+                        {
+                            stype[m]='\0'; /* end digit */
+                            l=0;  /* start 'IN' , 'DS', or 'ES' search */
+                            u++;  /* skip ',' */
+                        }
+                        c = str[u];
+                        if (!isdigit(c) && l==-1)
+                        {
+                            if (obj_list) HDfree(obj_list);
+                            error_msg("compression parameter is not a digit in <%s>\n",str);
+                            HDexit(EXIT_FAILURE);
+                        }
+                        if (l==-1)
+                            stype[m]=c;
+                        else
+                        {
+                            smask[l]=c;
+                            l++;
+                            if (l==2)
+                            {
+                                smask[l]='\0';
+                                i=len-1; /* end */
+                                (*n_objs)--; /* we counted an extra ',' */
+                                if (HDstrcmp(smask,"IN")==0)
+                                    filt->cd_values[j++]=H5Z_SO_INT;
+                                else if (HDstrcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE)
+                                    filt->cd_values[j++]=H5Z_SO_FLOAT_DSCALE;
+                                else
+                                {
+                                    error_msg("scale type must be 'IN' or 'DS' \n");
+                                    HDexit(EXIT_FAILURE);
+                                }
+
+                            }
+                        }
+
+                    }  /* u */
+                } /*if */
+                /*-------------------------------------------------------------------------
+                 * User Defined
+                 *   has the format UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]>
+                 *  BZIP2 example
+                 *  UD=307,1,9
+                 *-------------------------------------------------------------------------
+                 */
+
+                else if (HDstrcmp(scomp,"UD")==0)
+                {
+                    l=-1; /* filter number index check */
+                    p=-1; /* CD_VAL count check */
+                    r=-1; /* CD_VAL check */
+                    for ( m=0,q=0,u=i+1; u<len; u++,m++,q++)
+                    {
+                        if (str[u]==',')
+                        {
+                            stype[q]='\0'; /* end digit */
+                            if (l==-1)
+                            {
+                                filt->filtn=atoi(stype);
+                                l=0;
+                            }
+                            else if (p==-1)
+                            {
+                                filt->cd_nelmts=atoi(stype);
+                                p=0;
+                            }
+                            else
+                                r=0;
+                            q=0;
+                            u++;  /* skip ',' */
+                        }
+                        c = str[u];
+                        if (!isdigit(c) && l==-1)
+                        {
+                            if (obj_list) HDfree(obj_list);
+                            error_msg("filter number parameter is not a digit in <%s>\n",str);
+                            HDexit(EXIT_FAILURE);
+                        }
+                        stype[q]=c;
+                        if (l==0 && p==0)
+                        {
+                            if (r==0)
+                                filt->cd_values[j++]=atoi(stype);
+                        }
+
+                    }  /* u */
+
+                    stype[q]='\0';
+                } /*if */
+
+
+                /*-------------------------------------------------------------------------
+                 * all other filters
+                 *-------------------------------------------------------------------------
+                 */
+
+                else
+                {
+                    /* here we could have 1 or 2 digits  */
+                    for ( m=0,u=i+1; u<len; u++,m++)
+                    {
+                        c = str[u];
+                        if (!isdigit(c)){
+                            if (obj_list) HDfree(obj_list);
+                            error_msg("compression parameter is not a digit in <%s>\n",str);
+                            HDexit(EXIT_FAILURE);
+                        }
+                        stype[m]=c;
+                    } /* u */
+
+                    stype[m]='\0';
+                } /*if */
+
+
+
+                filt->cd_values[j++]=atoi(stype);
+                i+=m; /* jump */
+            }
+            else if (i==len-1)
+            { /*no more parameters */
+                scomp[k+1]='\0';
+                no_param=1;
+            }
+
+            /*-------------------------------------------------------------------------
+             * translate from string to filter symbol
+             *-------------------------------------------------------------------------
+             */
+
+            /*-------------------------------------------------------------------------
+             * H5Z_FILTER_NONE
+             *-------------------------------------------------------------------------
+             */
+            if (HDstrcmp(scomp,"NONE")==0)
+            {
+                filt->filtn=H5Z_FILTER_NONE;
+                filt->cd_nelmts = 0;
+            }
+
+            /*-------------------------------------------------------------------------
+             * H5Z_FILTER_DEFLATE
+             *-------------------------------------------------------------------------
+             */
+            else if (HDstrcmp(scomp,"GZIP")==0)
+            {
+                filt->filtn=H5Z_FILTER_DEFLATE;
+                filt->cd_nelmts = 1;
+                if (no_param)
+                { /*no more parameters, GZIP must have parameter */
+                    if (obj_list) HDfree(obj_list);
+                    error_msg("missing compression parameter in <%s>\n",str);
+                    HDexit(EXIT_FAILURE);
+                }
+            }
+
+            /*-------------------------------------------------------------------------
+             * H5Z_FILTER_SZIP
+             *-------------------------------------------------------------------------
+             */
+            else if (HDstrcmp(scomp,"SZIP")==0)
+            {
+                filt->filtn=H5Z_FILTER_SZIP;
+                filt->cd_nelmts = 2;
+                if (no_param)
+                { /*no more parameters, SZIP must have parameter */
+                    if (obj_list) HDfree(obj_list);
+                    error_msg("missing compression parameter in <%s>\n",str);
+                    HDexit(EXIT_FAILURE);
+                }
+            }
+
+            /*-------------------------------------------------------------------------
+             * H5Z_FILTER_SHUFFLE
+             *-------------------------------------------------------------------------
+             */
+            else if (HDstrcmp(scomp,"SHUF")==0)
+            {
+                filt->filtn=H5Z_FILTER_SHUFFLE;
+                filt->cd_nelmts = 0;
+                if (m>0)
+                { /*shuffle does not have parameter */
+                    if (obj_list) HDfree(obj_list);
+                    error_msg("extra parameter in SHUF <%s>\n",str);
+                    HDexit(EXIT_FAILURE);
+                }
+            }
+            /*-------------------------------------------------------------------------
+             * H5Z_FILTER_FLETCHER32
+             *-------------------------------------------------------------------------
+             */
+            else if (HDstrcmp(scomp,"FLET")==0)
+            {
+                filt->filtn=H5Z_FILTER_FLETCHER32;
+                filt->cd_nelmts = 0;
+                if (m>0)
+                { /*shuffle does not have parameter */
+                    if (obj_list) HDfree(obj_list);
+                    error_msg("extra parameter in FLET <%s>\n",str);
+                    HDexit(EXIT_FAILURE);
+                }
+            }
+            /*-------------------------------------------------------------------------
+             * H5Z_FILTER_NBIT
+             *-------------------------------------------------------------------------
+             */
+            else if (HDstrcmp(scomp,"NBIT")==0)
+            {
+                filt->filtn=H5Z_FILTER_NBIT;
+                filt->cd_nelmts = 0;
+                if (m>0)
+                { /*nbit does not have parameter */
+                    if (obj_list) HDfree(obj_list);
+                    error_msg("extra parameter in NBIT <%s>\n",str);
+                    HDexit(EXIT_FAILURE);
+                }
+            }
+            /*-------------------------------------------------------------------------
+             * H5Z_FILTER_SCALEOFFSET
+             *-------------------------------------------------------------------------
+             */
+            else if (HDstrcmp(scomp,"SOFF")==0)
+            {
+                filt->filtn=H5Z_FILTER_SCALEOFFSET;
+                filt->cd_nelmts = 2;
+                if (no_param)
+                { /*no more parameters, SOFF must have parameter */
+                    if (obj_list) HDfree(obj_list);
+                    error_msg("missing compression parameter in <%s>\n",str);
+                    HDexit(EXIT_FAILURE);
+                }
+            }
+            /*-------------------------------------------------------------------------
+             * User Defined Filter
+             *-------------------------------------------------------------------------
+             */
+            else if (HDstrcmp(scomp,"UD")==0)
+            {
+                if (filt->cd_nelmts != j)
+                { /* parameters does not match count */
+                    if (obj_list) HDfree(obj_list);
+                    error_msg("incorrect number of compression parameters in <%s>\n",str);
+                    HDexit(EXIT_FAILURE);
+                }
+            }
+            else {
+                if (obj_list) HDfree(obj_list);
+                error_msg("invalid filter type in <%s>\n",str);
+                HDexit(EXIT_FAILURE);
+            }
+        }
+    } /*i*/
+
+    /*-------------------------------------------------------------------------
+     * check valid parameters
+     *-------------------------------------------------------------------------
+     */
+
+    switch (filt->filtn)
+    {
+
+    /*-------------------------------------------------------------------------
+     * H5Z_FILTER_DEFLATE
+     *-------------------------------------------------------------------------
+     */
+
+    case H5Z_FILTER_DEFLATE:
+        if (filt->cd_values[0]>9 )
+        {
+            if (obj_list) HDfree(obj_list);
+            error_msg("invalid compression parameter in <%s>\n",str);
+            HDexit(EXIT_FAILURE);
+        }
+        break;
+
+        /*-------------------------------------------------------------------------
+         * H5Z_FILTER_SZIP
+         *-------------------------------------------------------------------------
+         */
+
+    case H5Z_FILTER_SZIP:
+        pixels_per_block=filt->cd_values[0];
+        if ((pixels_per_block%2)==1)
+        {
+            if (obj_list) HDfree(obj_list);
+            error_msg("pixels_per_block is not even in <%s>\n",str);
+            HDexit(EXIT_FAILURE);
+        }
+        if (pixels_per_block>H5_SZIP_MAX_PIXELS_PER_BLOCK)
+        {
+            if (obj_list) HDfree(obj_list);
+            error_msg("pixels_per_block is too large in <%s>\n",str);
+            HDexit(EXIT_FAILURE);
+        }
+        if ( (HDstrcmp(smask,"NN")!=0) && (HDstrcmp(smask,"EC")!=0) )
+        {
+            if (obj_list) HDfree(obj_list);
+            error_msg("szip mask must be 'NN' or 'EC' \n");
+            HDexit(EXIT_FAILURE);
+        }
+        break;
+    default:
+        break;
+
+
+    };
+
+    return obj_list;
 }
 
 
@@ -540,9 +540,9 @@ obj_list_t* parse_filter(const char *str,
  *-------------------------------------------------------------------------
  */
 obj_list_t* parse_layout(const char *str,
-                         int *n_objs,
-                         pack_info_t *pack,    /* info about layout needed */
-                         pack_opt_t *options)
+        int *n_objs,
+        pack_info_t *pack,    /* info about layout needed */
+        pack_opt_t *options)
 {
     obj_list_t* obj_list=NULL;
     unsigned    i;
@@ -636,10 +636,10 @@ obj_list_t* parse_layout(const char *str,
     if ( pack->layout==H5D_CHUNKED )
     {
 
-    /*-------------------------------------------------------------------------
-    * get chunk info
-    *-------------------------------------------------------------------------
-        */
+        /*-------------------------------------------------------------------------
+         * get chunk info
+         *-------------------------------------------------------------------------
+         */
         k=0;
 
         if (j>(int)len)
@@ -656,11 +656,11 @@ obj_list_t* parse_layout(const char *str,
             k++; /*increment sdim index */
 
             if (!isdigit(c) && c!='x'
-                && c!='N' && c!='O' && c!='N' && c!='E'
-                ){
+                    && c!='N' && c!='O' && c!='N' && c!='E'
+            ){
                 if (obj_list) HDfree(obj_list);
                 error_msg("in parse layout, <%s> Not a valid character in <%s>\n",
-                    sdim,str);
+                        sdim,str);
                 HDexit(EXIT_FAILURE);
             }
 
@@ -673,7 +673,7 @@ obj_list_t* parse_layout(const char *str,
                     if (pack->chunk.chunk_lengths[c_index]==0) {
                         if (obj_list) HDfree(obj_list);
                         error_msg("in parse layout, <%s> conversion to number in <%s>\n",
-                            sdim,str);
+                                sdim,str);
                         HDexit(EXIT_FAILURE);
                     }
                     c_index++;
@@ -691,7 +691,7 @@ obj_list_t* parse_layout(const char *str,
                         if (pack->chunk.chunk_lengths[c_index]==0){
                             if (obj_list) HDfree(obj_list);
                             error_msg("in parse layout, <%s> conversion to number in <%s>\n",
-                                sdim,str);
+                                    sdim,str);
                             HDexit(EXIT_FAILURE);
                         }
                         pack->chunk.rank=c_index+1;
diff --git a/tools/h5repack/h5repack_verify.c b/tools/h5repack/h5repack_verify.c
index 42799f9..52423f1 100644
--- a/tools/h5repack/h5repack_verify.c
+++ b/tools/h5repack/h5repack_verify.c
@@ -51,17 +51,17 @@ static int verify_filters(hid_t pid, hid_t tid, int nfilters, filter_info_t *fil
 int
 h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options)
 {
-    hid_t        fidin;	 /* file ID for input file*/
-    hid_t        fidout; /* file ID for output file*/
-    hid_t        did;    /* dataset ID */
-    hid_t        pid;    /* dataset creation property list ID */
-    hid_t        sid;    /* space ID */
-    hid_t        tid;    /* type ID */
+    hid_t        fidin      = -1;	/* file ID for input file*/
+    hid_t        fidout     = -1;   /* file ID for output file*/
+    hid_t        did        = -1;   /* dataset ID */
+    hid_t        pid        = -1;   /* dataset creation property list ID */
+    hid_t        sid        = -1;   /* space ID */
+    hid_t        tid        = -1;   /* type ID */
     unsigned int i;
     trav_table_t *travt = NULL;
     int          ok = 1;
-    hid_t       fcpl_in;  /* file creation property for input file */
-    hid_t   	fcpl_out; /* file creation property for output file */
+    hid_t       fcpl_in     = -1;   /* file creation property for input file */
+    hid_t   	fcpl_out    = -1;   /* file creation property for output file */
     H5F_file_space_type_t in_strat, out_strat;	/* file space handling strategy for in/output file */
     hsize_t	in_thresh, out_thresh;		/* free space section threshold for in/output file */
 
diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c
index 46d895c..3959300 100644
--- a/tools/h5repack/h5repacktst.c
+++ b/tools/h5repack/h5repacktst.c
@@ -1547,10 +1547,8 @@ int main (void)
     {
         hid_t       fapl;
 
-        /* setup */
-        h5_reset();
         fapl = h5_fileaccess();
-        h5_cleanup(H5REPACK_FILENAMES, fapl);
+        h5_clean_files(H5REPACK_FILENAMES, fapl);
 
     }