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authorAllen Byrne <byrn@hdfgroup.org>2018-11-09 14:13:07 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2018-11-09 14:13:07 (GMT)
commit4da93e9d6f9ee0fc7462ee66645c5ad0fa9a9e35 (patch)
treead6d5f412a8f1af0a2121bb0fb7fa3073462c713 /tools/h5stat
parentf97de01d36cde2b66042ffac3debcfab72de0c1d (diff)
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TRILABS-81 coverity tools fixes
Diffstat (limited to 'tools/h5stat')
-rw-r--r--tools/h5stat/h5stat.c126
-rw-r--r--tools/h5stat/h5stat_gentest.c207
2 files changed, 152 insertions, 181 deletions
diff --git a/tools/h5stat/h5stat.c b/tools/h5stat/h5stat.c
index 1357952..55ae638 100644
--- a/tools/h5stat/h5stat.c
+++ b/tools/h5stat/h5stat.c
@@ -24,9 +24,9 @@
/* Parameters to control statistics gathered */
/* Default threshold for small groups/datasets/attributes */
-#define DEF_SIZE_SMALL_GROUPS 10
-#define DEF_SIZE_SMALL_DSETS 10
-#define DEF_SIZE_SMALL_ATTRS 10
+#define DEF_SIZE_SMALL_GROUPS 10
+#define DEF_SIZE_SMALL_DSETS 10
+#define DEF_SIZE_SMALL_ATTRS 10
#define H5_NFILTERS_IMPL 8 /* Number of currently implemented filters + one to
accommodate for user-define filters + one
@@ -72,7 +72,7 @@ typedef struct iter_t {
hsize_t max_dset_dims; /* Maximum dimension size of dataset */
unsigned long *small_dset_dims; /* Size of dimensions of small datasets tracked */
unsigned long dset_layouts[H5D_NLAYOUTS]; /* Type of storage for each dataset */
- unsigned long dset_comptype[H5_NFILTERS_IMPL]; /* Number of currently implemented filters */
+ unsigned long dset_comptype[H5_NFILTERS_IMPL]; /* Number of currently implemented filters */
unsigned long dset_ntypes; /* Number of diff. dataset datatypes found */
dtype_info_t *dset_type_info; /* Pointer to dataset datatype information found */
unsigned dset_dim_nbins; /* Number of bins for dataset dimensions */
@@ -114,9 +114,9 @@ static int display_dset_metadata = FALSE; /* display file space info f
static int display_object = FALSE; /* not implemented yet */
/* Initialize threshold for small groups/datasets/attributes */
-static int sgroups_threshold = DEF_SIZE_SMALL_GROUPS;
-static int sdsets_threshold = DEF_SIZE_SMALL_DSETS;
-static int sattrs_threshold = DEF_SIZE_SMALL_ATTRS;
+static int sgroups_threshold = DEF_SIZE_SMALL_GROUPS;
+static int sdsets_threshold = DEF_SIZE_SMALL_DSETS;
+static int sattrs_threshold = DEF_SIZE_SMALL_ATTRS;
/* a structure for handling the order command-line parameters come in */
struct handler_t {
@@ -347,9 +347,8 @@ attribute_stats(iter_t *iter, const H5O_info_t *oi)
*
* Purpose: Gather statistics about the group
*
- * Return: Success: 0
- *
- * Failure: -1
+ * Return: Success: 0
+ * Failure: -1
*
* Programmer: Quincey Koziol
* Tuesday, August 16, 2005
@@ -430,7 +429,6 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi)
* Purpose: Gather statistics about the dataset
*
* Return: Success: 0
- *
* Failure: -1
*
* Programmer: Quincey Koziol
@@ -521,27 +519,27 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi)
/* Only gather dim size statistics on 1-D datasets */
if(ndims == 1) {
- /* Determine maximum dimension size */
- if(dims[0] > iter->max_dset_dims)
- iter->max_dset_dims = dims[0];
- /* Collect statistics for small datasets */
- if(dims[0] < (hsize_t)sdsets_threshold)
- (iter->small_dset_dims[(size_t)dims[0]])++;
-
- /* Add dim count to proper bin */
- bin = ceil_log10((unsigned long)dims[0]);
- if((bin + 1) > iter->dset_dim_nbins) {
- /* Allocate more storage for info about dataset's datatype */
- iter->dset_dim_bins = (unsigned long *)HDrealloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long));
- HDassert(iter->dset_dim_bins);
-
- /* Initialize counts for intermediate bins */
- while(iter->dset_dim_nbins < bin)
- iter->dset_dim_bins[iter->dset_dim_nbins++] = 0;
- iter->dset_dim_nbins++;
-
- /* Initialize count for this bin */
- iter->dset_dim_bins[bin] = 1;
+ /* Determine maximum dimension size */
+ if(dims[0] > iter->max_dset_dims)
+ iter->max_dset_dims = dims[0];
+ /* Collect statistics for small datasets */
+ if(dims[0] < (hsize_t)sdsets_threshold)
+ (iter->small_dset_dims[(size_t)dims[0]])++;
+
+ /* Add dim count to proper bin */
+ bin = ceil_log10((unsigned long)dims[0]);
+ if((bin + 1) > iter->dset_dim_nbins) {
+ /* Allocate more storage for info about dataset's datatype */
+ iter->dset_dim_bins = (unsigned long *)HDrealloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long));
+ HDassert(iter->dset_dim_bins);
+
+ /* Initialize counts for intermediate bins */
+ while(iter->dset_dim_nbins < bin)
+ iter->dset_dim_bins[iter->dset_dim_nbins++] = 0;
+ iter->dset_dim_nbins++;
+
+ /* Initialize count for this bin */
+ iter->dset_dim_bins[bin] = 1;
} /* end if */
else
(iter->dset_dim_bins[bin])++;
@@ -560,6 +558,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi)
type_found = TRUE;
break;
} /* end for */
+
if(type_found)
(iter->dset_type_info[u].count)++;
else {
@@ -702,9 +701,8 @@ obj_stats(const char *path, const H5O_info_t *oi, const char *already_visited,
*
* Purpose: Gather statistics about a link
*
- * Return: Success: 0
- *
- * Failure: -1
+ * Return: Success: 0
+ * Failure: -1
*
* Programmer: Quincey Koziol
* Tuesday, November 6, 2007
@@ -822,14 +820,14 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
break;
case 'l':
- if(opt_arg) {
- sgroups_threshold = HDatoi(opt_arg);
- if(sgroups_threshold < 1) {
- error_msg("Invalid threshold for small groups\n");
- goto error;
- }
- } else
- error_msg("Missing threshold for small groups\n");
+ if(opt_arg) {
+ sgroups_threshold = HDatoi(opt_arg);
+ if(sgroups_threshold < 1) {
+ error_msg("Invalid threshold for small groups\n");
+ goto error;
+ }
+ } else
+ error_msg("Missing threshold for small groups\n");
break;
@@ -844,14 +842,14 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
break;
case 'm':
- if(opt_arg) {
- sdsets_threshold = HDatoi(opt_arg);
- if(sdsets_threshold < 1) {
- error_msg("Invalid threshold for small datasets\n");
- goto error;
- }
- } else
- error_msg("Missing threshold for small datasets\n");
+ if(opt_arg) {
+ sdsets_threshold = HDatoi(opt_arg);
+ if(sdsets_threshold < 1) {
+ error_msg("Invalid threshold for small datasets\n");
+ goto error;
+ }
+ } else
+ error_msg("Missing threshold for small datasets\n");
break;
@@ -866,13 +864,13 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
break;
case 'a':
- if(opt_arg) {
- sattrs_threshold = HDatoi(opt_arg);
- if(sattrs_threshold < 1) {
- error_msg("Invalid threshold for small # of attributes\n");
- goto error;
- }
- } else
+ if(opt_arg) {
+ sattrs_threshold = HDatoi(opt_arg);
+ if(sattrs_threshold < 1) {
+ error_msg("Invalid threshold for small # of attributes\n");
+ goto error;
+ }
+ } else
error_msg("Missing threshold for small # of attributes\n");
break;
@@ -1143,9 +1141,8 @@ print_group_info(const iter_t *iter)
*
* Purpose: Prints file space information for groups' metadata
*
- * Return: Success: 0
- *
- * Failure: Never fails
+ * Return: Success: 0
+ * Failure: Never fails
*
* Programmer: Vailin Choi; October 2009
*
@@ -1171,9 +1168,8 @@ print_group_metadata(const iter_t *iter)
*
* Purpose: Prints information about datasets in the file
*
- * Return: Success: 0
- *
- * Failure: Never fails
+ * Return: Success: 0
+ * Failure: Never fails
*
* Programmer: Elena Pourmal
* Saturday, August 12, 2006
@@ -1234,7 +1230,7 @@ print_dataset_info(const iter_t *iter)
printf("Dataset layout information:\n");
for(u = 0; u < H5D_NLAYOUTS; u++)
- printf("\tDataset layout counts[%s]: %lu\n", (u == 0 ? "COMPACT" :
+ printf("\tDataset layout counts[%s]: %lu\n", (u == 0 ? "COMPACT" :
(u == 1 ? "CONTIG" : "CHUNKED")), iter->dset_layouts[u]);
printf("\tNumber of external files : %lu\n", iter->nexternal);
diff --git a/tools/h5stat/h5stat_gentest.c b/tools/h5stat/h5stat_gentest.c
index 6031808..fda8ac4 100644
--- a/tools/h5stat/h5stat_gentest.c
+++ b/tools/h5stat/h5stat_gentest.c
@@ -14,7 +14,7 @@
/*
* Generate the binary hdf5 files for the h5stat tests.
* Usage: just execute the program without any arguments will
- * generate all the binary hdf5 files
+ * generate all the binary hdf5 files
*
* If you regenerate the test files (e.g., changing some code,
* trying it on a new platform, ...), you need to verify the correctness
@@ -23,26 +23,26 @@
#include "hdf5.h"
/* For gen_newgrat_file() */
-#define NEWGRAT_FILE "h5stat_newgrat.h5"
-#define DATASET_NAME "DATASET_NAME"
-#define GROUP_NAME "GROUP"
-#define ATTR_NAME "ATTR"
-#define NUM_GRPS 35000
-#define NUM_ATTRS 100
+#define NEWGRAT_FILE "h5stat_newgrat.h5"
+#define DATASET_NAME "DATASET_NAME"
+#define GROUP_NAME "GROUP"
+#define ATTR_NAME "ATTR"
+#define NUM_GRPS 35000
+#define NUM_ATTRS 100
/* For gen_threshold_file() */
-#define THRESHOLD_FILE "h5stat_threshold.h5"
-#define THRES_ATTR_NAME "attr"
-#define THRES_ATTR_GRP_NAME "grp_attr"
-#define THRES_DSET_NAME "dset"
-#define THRES_NUM 10
-#define THRES_NUM_25 25
+#define THRESHOLD_FILE "h5stat_threshold.h5"
+#define THRES_ATTR_NAME "attr"
+#define THRES_ATTR_GRP_NAME "grp_attr"
+#define THRES_DSET_NAME "dset"
+#define THRES_NUM 10
+#define THRES_NUM_25 25
/*
* Generate HDF5 file with latest format with
* NUM_GRPS groups and NUM_ATTRS attributes for the dataset
*/
-static void
+static void
gen_newgrat_file(const char *fname)
{
hid_t fapl = -1; /* File access property */
@@ -52,65 +52,57 @@ gen_newgrat_file(const char *fname)
hid_t sid = -1; /* Dataspace id */
hid_t attr_id = -1; /* Attribute id */
hid_t did = -1; /* Dataset id */
- char name[30]; /* Group name */
- char attrname[30]; /* Attribute name */
- int i; /* Local index variable */
+ char name[30]; /* Group name */
+ char attrname[30]; /* Attribute name */
+ int i; /* Local index variable */
/* Get a copy file access property list */
if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
- goto error;
+ goto error;
/* Set to use latest library format */
if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
- goto error;
+ goto error;
/* Create file */
if((fid = H5Fcreate(NEWGRAT_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0)
- goto error;
+ goto error;
/* Create NUM_GRPS groups in the root group */
for(i = 1; i <= NUM_GRPS; i++) {
sprintf(name, "%s%d", GROUP_NAME,i);
if((gid = H5Gcreate2(fid, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
if(H5Gclose(gid) < 0)
- goto error;
+ goto error;
} /* end for */
/* Create a datatype to commit and use */
if((tid = H5Tcopy(H5T_NATIVE_INT)) < 0)
- goto error;
+ goto error;
/* Create dataspace for dataset */
if((sid = H5Screate(H5S_SCALAR)) < 0)
- goto error;
+ goto error;
/* Create dataset */
if((did = H5Dcreate2(fid, DATASET_NAME, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
/* Create NUM_ATTRS for the dataset */
for(i = 1; i <= NUM_ATTRS; i++) {
sprintf(attrname, "%s%d", ATTR_NAME,i);
if((attr_id = H5Acreate2(did, attrname, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
if(H5Aclose(attr_id) < 0)
- goto error;
+ goto error;
} /* end for */
/* Close dataset, dataspace, datatype, file */
- if(H5Dclose(did) < 0)
- goto error;
- if(H5Sclose(sid) < 0)
- goto error;
- if(H5Tclose(tid) < 0)
- goto error;
- if(H5Fclose(fid) < 0)
- goto error;
-
error:
H5E_BEGIN_TRY {
- H5Aclose(attr_id);
+ H5Pclose(fapl);
+ H5Aclose(attr_id);
H5Dclose(did);
H5Tclose(tid);
H5Sclose(sid);
@@ -121,192 +113,175 @@ error:
/*
* Generate an HDF5 file with groups, datasets, attributes for testing the options:
- * -l N (--links=N): Set the threshold for # of links when printing information for small groups.
- * -m N (--dims=N): Set the threshold for the # of dimension sizes when printing information for small datasets.
- * -a N (--numattrs=N): Set the threshold for the # of attributes when printing information for small # of attributes.
+ * -l N (--links=N): Set the threshold for # of links when printing information for small groups.
+ * -m N (--dims=N): Set the threshold for the # of dimension sizes when printing information for small datasets.
+ * -a N (--numattrs=N): Set the threshold for the # of attributes when printing information for small # of attributes.
*/
static void
gen_threshold_file(const char *fname)
{
- hid_t fid; /* File ID */
- hid_t sid0, sid1, sid2, sid3, sid4; /* Dataspace IDs */
- hid_t did; /* Dataset ID */
- hid_t attr_id; /* Attribute ID */
- hid_t gid; /* Group ID */
- hsize_t two_dims[] = {2, 5}; /* Dimension array */
- hsize_t one_dims[] = {6}; /* Dimension array */
- hsize_t zero_dims[] = {0}; /* Dimension array */
- char name[30]; /* Name */
- unsigned i; /* Local index variable */
+ hid_t fid = -1; /* File ID */
+ hid_t sid0 = -1; /* Dataspace IDs */
+ hid_t sid1 = -1; /* Dataspace IDs */
+ hid_t sid2 = -1; /* Dataspace IDs */
+ hid_t sid3 = -1; /* Dataspace IDs */
+ hid_t sid4 = -1; /* Dataspace IDs */
+ hid_t did = -1; /* Dataset ID */
+ hid_t attr_id = -1; /* Attribute ID */
+ hid_t gid = -1; /* Group ID */
+ hsize_t two_dims[] = {2, 5}; /* Dimension array */
+ hsize_t one_dims[] = {6}; /* Dimension array */
+ hsize_t zero_dims[] = {0}; /* Dimension array */
+ char name[30]; /* Name */
+ unsigned i; /* Local index variable */
/* Create file */
if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
/* Create 1-D dataspace with zero dimension size */
if((sid0 = H5Screate_simple(1, zero_dims, NULL)) < 0)
- goto error;
+ goto error;
/* Create 1-D dataspace with non-zero dimension size*/
if((sid1 = H5Screate_simple(1, one_dims, NULL)) < 0)
- goto error;
+ goto error;
/* Create 2-D dataspace */
if((sid2 = H5Screate_simple(2, two_dims, NULL)) < 0)
- goto error;
+ goto error;
/* Create scalar dataspace */
if((sid3 = H5Screate(H5S_SCALAR)) < 0)
- goto error;
+ goto error;
/* Create null dataspace */
if((sid4 = H5Screate(H5S_NULL)) < 0)
- goto error;
+ goto error;
/* Create an attribute for the root group */
if((attr_id = H5Acreate2(fid, "attr", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
if(H5Aclose(attr_id) < 0)
- goto error;
+ goto error;
/* Create 1-D dataset with zero dimension size for the root group */
if((did = H5Dcreate2(fid, "zero_dset", H5T_NATIVE_UCHAR, sid0, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
/* Create 11 attributes for the dataset */
for(i = 1; i <= (THRES_NUM+1); i++) {
sprintf(name, "%s%d", THRES_ATTR_NAME,i);
if((attr_id = H5Acreate2(did, name, H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
if(H5Aclose(attr_id) < 0)
- goto error;
+ goto error;
}
if(H5Dclose(did) < 0)
- goto error;
+ goto error;
/* Create dataset with scalar dataspace for the root group */
if((did = H5Dcreate2(fid, "scalar_dset", H5T_NATIVE_UCHAR, sid3, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
if(H5Dclose(did) < 0)
- goto error;
+ goto error;
/* Create dataset with null dataspace for the root group */
if((did = H5Dcreate2(fid, "null_dset", H5T_NATIVE_UCHAR, sid4, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
if(H5Dclose(did) < 0)
- goto error;
+ goto error;
/* Create 2-D dataset for the root group */
if((did = H5Dcreate2(fid, "dset", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
/* Create 10 attributes for the 2-D dataset */
for(i = 1; i <= THRES_NUM; i++) {
sprintf(name, "%s%d", THRES_ATTR_NAME,i);
if((attr_id = H5Acreate2(did, name, H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
if(H5Aclose(attr_id) < 0)
- goto error;
+ goto error;
}
if(H5Dclose(did) < 0)
- goto error;
+ goto error;
/* Create first group */
if((gid = H5Gcreate2(fid, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
/* Create an attribute for the group */
if((attr_id = H5Acreate2(gid, "ATTR", H5T_NATIVE_INT, sid3, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
/* Close attribute */
if(H5Aclose(attr_id) < 0)
- goto error;
+ goto error;
/* Create 10 1-D datasets with non-zero dimension size for the group */
for(i = 1; i <= THRES_NUM; i++) {
- /* set up dataset name */
+ /* set up dataset name */
sprintf(name, "%s%d", THRES_DSET_NAME,i);
- /* Create the dataset */
- if((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ /* Create the dataset */
+ if((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
- /* Close the dataset */
+ /* Close the dataset */
if(H5Dclose(did) < 0)
- goto error;
+ goto error;
}
/* Close the group */
if(H5Gclose(gid) < 0)
- goto error;
+ goto error;
/* Create second group */
if((gid = H5Gcreate2(fid, "group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
/* Create 25 attributes for the group */
for(i = 1; i <= THRES_NUM_25; i++) {
- /* Set up attribute name */
+ /* Set up attribute name */
sprintf(name, "%s%d", THRES_ATTR_GRP_NAME,i);
- /* Create the attribute */
+ /* Create the attribute */
if((attr_id = H5Acreate2(gid, name, H5T_NATIVE_INT, sid2, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
- /* Close the attribute */
+ /* Close the attribute */
if(H5Aclose(attr_id) < 0)
- goto error;
+ goto error;
}
/* Close the group */
if(H5Gclose(gid) < 0)
- goto error;
+ goto error;
/* Create third group */
if((gid = H5Gcreate2(fid, "group3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ goto error;
/* Create 9 1-D datasets with non-zero dimension size for the group */
for(i = 1; i < THRES_NUM; i++) {
- /* set up dataset name */
+ /* set up dataset name */
sprintf(name, "%s%d", THRES_DSET_NAME,i);
- /* Create the dataset */
- if((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto error;
+ /* Create the dataset */
+ if((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
- /* Close the dataset */
+ /* Close the dataset */
if(H5Dclose(did) < 0)
- goto error;
+ goto error;
}
- /* Close the group */
- if(H5Gclose(gid) < 0)
- goto error;
-
-
- /* Close dataspaces */
- if(H5Sclose(sid0) < 0)
- goto error;
- if(H5Sclose(sid1) < 0)
- goto error;
- if(H5Sclose(sid2) < 0)
- goto error;
- if(H5Sclose(sid3) < 0)
- goto error;
- if(H5Sclose(sid4) < 0)
- goto error;
-
- /* Close file */
- if(H5Fclose(fid) < 0)
- goto error;
-
error:
H5E_BEGIN_TRY {
H5Gclose(gid);
- H5Aclose(attr_id);
+ H5Aclose(attr_id);
H5Dclose(did);
H5Sclose(sid0);
H5Sclose(sid1);