[svn-r14903] Undoing change committed in r14902.

1 files changed, 691 insertions, 678 deletions

diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c
index ea833db..3f4e6a3 100644
--- a/tools/lib/h5diff_dset.c
+++ b/tools/lib/h5diff_dset.c
@@ -19,33 +19,6 @@
 #include "h5tools.h"
 
 /*-------------------------------------------------------------------------
- * Function: print_size
- *
- * Purpose: print dimensions 
- *
- *-------------------------------------------------------------------------
- */
-#if defined (H5DIFF_DEBUG)
-static void
-print_size (int rank, hsize_t *dims)
-{
-    int i;
-
-    parallel_print("[" );
-    for ( i = 0; i < rank-1; i++)
-    {
-        parallel_print("%"H5_PRINTF_LL_WIDTH"u", (unsigned long_long)dims[i]);
-        parallel_print("x");
-    }
-    parallel_print("%"H5_PRINTF_LL_WIDTH"u", (unsigned long_long)dims[rank-1]);
-    parallel_print("]\n" );
-    
-}
-#endif /* H5DIFF_DEBUG */
-
-
-
-/*-------------------------------------------------------------------------
  * Function: diff_dataset
  *
  * Purpose: check for comparable datasets and read into a compatible
@@ -65,79 +38,85 @@ hsize_t diff_dataset( hid_t file1_id,
                       const char *obj2_name,
                       diff_opt_t *options)
 {
- hid_t   did1 = -1;
- hid_t   did2 = -1;
- hid_t   dcpl1 = -1;
- hid_t   dcpl2 = -1;
- hsize_t nfound = 0;
-
-/*-------------------------------------------------------------------------
- * open the handles
- *-------------------------------------------------------------------------
- */
- /* disable error reporting */
- H5E_BEGIN_TRY {
- /* Open the datasets */
- if((did1 = H5Dopen2(file1_id, obj1_name, H5P_DEFAULT)) < 0) {
-  printf("Cannot open dataset <%s>\n", obj1_name);
-  goto error;
- }
- if((did2 = H5Dopen2(file2_id, obj2_name, H5P_DEFAULT)) < 0) {
-  printf("Cannot open dataset <%s>\n", obj2_name);
-  goto error;
- }
- /* enable error reporting */
- } H5E_END_TRY;
-
-
- if((dcpl1 = H5Dget_create_plist(did1)) < 0)
-  goto error;
- if((dcpl2 = H5Dget_create_plist(did2)) < 0)
-  goto error;
-
-/*-------------------------------------------------------------------------
- * check if the dataset creation property list has filters that
- * are not registered in the current configuration
- * 1) the external filters GZIP and SZIP might not be available
- * 2) the internal filters might be turned off
- *-------------------------------------------------------------------------
- */
- if ((h5tools_canreadf((options->m_verbose?obj1_name:NULL),dcpl1)==1) &&
-     (h5tools_canreadf((options->m_verbose?obj2_name:NULL),dcpl2)==1))
- {
-  nfound=diff_datasetid(did1,
-                        did2,
-                        obj1_name,
-                        obj2_name,
-                        options);
- }
-/*-------------------------------------------------------------------------
- * close
- *-------------------------------------------------------------------------
- */
- /* disable error reporting */
- H5E_BEGIN_TRY {
-  H5Pclose(dcpl1);
-  H5Pclose(dcpl2);
-  H5Dclose(did1);
-  H5Dclose(did2);
-   /* enable error reporting */
- } H5E_END_TRY;
-
- return nfound;
-
+    hid_t   did1 = -1;
+    hid_t   did2 = -1;
+    hid_t   dcpl1 = -1;
+    hid_t   dcpl2 = -1;
+    hsize_t nfound = 0;
+    
+   /*-------------------------------------------------------------------------
+    * open the handles
+    *-------------------------------------------------------------------------
+    */
+    /* disable error reporting */
+    H5E_BEGIN_TRY 
+    {
+        /* open the datasets */
+        if((did1 = H5Dopen2(file1_id, obj1_name, H5P_DEFAULT)) < 0) 
+        {
+            printf("Cannot open dataset <%s>\n", obj1_name);
+            goto error;
+        }
+        
+        if((did2 = H5Dopen2(file2_id, obj2_name, H5P_DEFAULT)) < 0) 
+        {
+            printf("Cannot open dataset <%s>\n", obj2_name);
+            goto error;
+        }
+        /* enable error reporting */
+    } H5E_END_TRY;
+    
+    
+    if ((dcpl1 = H5Dget_create_plist(did1)) < 0)
+        goto error;
+    if ((dcpl2 = H5Dget_create_plist(did2)) < 0)
+        goto error;
+    
+   /*-------------------------------------------------------------------------
+    * check if the dataset creation property list has filters that
+    * are not registered in the current configuration
+    * 1) the external filters GZIP and SZIP might not be available
+    * 2) the internal filters might be turned off
+    *-------------------------------------------------------------------------
+    */
+    if ((h5tools_canreadf((options->m_verbose?obj1_name:NULL),dcpl1)==1) &&
+        (h5tools_canreadf((options->m_verbose?obj2_name:NULL),dcpl2)==1))
+    {
+        nfound=diff_datasetid(did1,
+            did2,
+            obj1_name,
+            obj2_name,
+            options);
+    }
+   /*-------------------------------------------------------------------------
+    * close
+    *-------------------------------------------------------------------------
+    */
+    /* disable error reporting */
+    H5E_BEGIN_TRY 
+    {
+        H5Pclose(dcpl1);
+        H5Pclose(dcpl2);
+        H5Dclose(did1);
+        H5Dclose(did2);
+        /* enable error reporting */
+    } H5E_END_TRY;
+    
+    return nfound;
+    
 error:
- options->err_stat=1;
- /* disable error reporting */
- H5E_BEGIN_TRY {
-  H5Pclose(dcpl1);
-  H5Pclose(dcpl2);
-  H5Dclose(did1);
-  H5Dclose(did2);
-   /* enable error reporting */
- } H5E_END_TRY;
-
- return nfound;
+    options->err_stat=1;
+    /* disable error reporting */
+    H5E_BEGIN_TRY 
+    {
+        H5Pclose(dcpl1);
+        H5Pclose(dcpl2);
+        H5Dclose(did1);
+        H5Dclose(did2);
+        /* enable error reporting */
+    } H5E_END_TRY;
+    
+    return nfound;
 }
 
 /*-------------------------------------------------------------------------
@@ -154,7 +133,6 @@ error:
  *
  * Modifications: 
  *
- *
  * October 2006:  Read by hyperslabs for big datasets.
  *
  *  A threshold of H5TOOLS_MALLOCSIZE (128 MB) is the limit upon which I/O hyperslab is done
@@ -204,448 +182,456 @@ hsize_t diff_datasetid( hid_t did1,
                         const char *obj2_name,
                         diff_opt_t *options)
 {
- hid_t      sid1=-1;
- hid_t      sid2=-1;
- hid_t      f_tid1=-1;
- hid_t      f_tid2=-1;                
- hid_t      m_tid1=-1;
- hid_t      m_tid2=-1;                
- size_t     m_size1;
- size_t     m_size2;               
- H5T_sign_t sign1;
- H5T_sign_t sign2;                 
- int        rank1;
- int        rank2;
- hsize_t    nelmts1;
- hsize_t    nelmts2;
- hsize_t    dims1[H5S_MAX_RANK];
- hsize_t    dims2[H5S_MAX_RANK];
- hsize_t    maxdim1[H5S_MAX_RANK];
- hsize_t    maxdim2[H5S_MAX_RANK];
- const char *name1=NULL;            /* relative names */
- const char *name2=NULL;
- hsize_t    storage_size1;
- hsize_t    storage_size2;
- hsize_t    nfound=0;               /* number of differences found */
- int        cmp=1;                  /* do diff or not */
- void       *buf1=NULL;                  
- void       *buf2=NULL; 
- void       *sm_buf1=NULL;                
- void       *sm_buf2=NULL;
- size_t     need;                   /* bytes needed for malloc */
- int        i;
-
-  /* Get the dataspace handle */
- if ( (sid1 = H5Dget_space(did1)) < 0 )
-  goto error;
-
- /* Get rank */
- if ( (rank1 = H5Sget_simple_extent_ndims(sid1)) < 0 )
-  goto error;
-
- /* Get the dataspace handle */
- if ( (sid2 = H5Dget_space(did2)) < 0 )
-  goto error;
-
- /* Get rank */
- if ( (rank2 = H5Sget_simple_extent_ndims(sid2)) < 0 )
-  goto error;
-
- /* Get dimensions */
- if ( H5Sget_simple_extent_dims(sid1,dims1,maxdim1) < 0 )
-  goto error;
-
- /* Get dimensions */
- if ( H5Sget_simple_extent_dims(sid2,dims2,maxdim2) < 0 )
-  goto error;
-
-/*-------------------------------------------------------------------------
- * Get the file data type
- *-------------------------------------------------------------------------
- */
-
- /* Get the data type */
- if ( (f_tid1 = H5Dget_type(did1)) < 0 )
-  goto error;
-
- /* Get the data type */
- if ( (f_tid2 = H5Dget_type(did2)) < 0 )
-  goto error;
-
-/*-------------------------------------------------------------------------
- * check for empty datasets
- *-------------------------------------------------------------------------
- */
-
- storage_size1=H5Dget_storage_size(did1);
- storage_size2=H5Dget_storage_size(did2);
-
- if (storage_size1==0 || storage_size2==0)
- {
-  if (options->m_verbose && obj1_name && obj2_name)
-   parallel_print("<%s> or <%s> are empty datasets\n", obj1_name, obj2_name);
-  cmp=0;
-  options->not_cmp=1;
- }
-
-/*-------------------------------------------------------------------------
- * check for comparable TYPE and SPACE
- *-------------------------------------------------------------------------
- */
-
- if (diff_can_type(f_tid1,
-                   f_tid2,
-                   rank1,
-                   rank2,
-                   dims1,
-                   dims2,
-                   maxdim1,
-                   maxdim2,
-                   obj1_name,
-                   obj2_name,
-                   options)!=1)
- {
-  cmp=0;
-  options->not_cmp=1;
- }
-
-/*-------------------------------------------------------------------------
- * memory type and sizes
- *-------------------------------------------------------------------------
- */
- if ((m_tid1=h5tools_get_native_type(f_tid1)) < 0)
-  goto error;
-
- if ((m_tid2=h5tools_get_native_type(f_tid2)) < 0)
-  goto error;
-
- m_size1 = H5Tget_size( m_tid1 );
- m_size2 = H5Tget_size( m_tid2 );
-
-/*-------------------------------------------------------------------------
- * check for different signed/unsigned types
- *-------------------------------------------------------------------------
- */
-
- sign1=H5Tget_sign(m_tid1);
- sign2=H5Tget_sign(m_tid2);
- if ( sign1 != sign2 )
- {
-  if (options->m_verbose && obj1_name) {
-   parallel_print("Comparison not supported: <%s> has sign %s ", obj1_name, get_sign(sign1));
-   parallel_print("and <%s> has sign %s\n", obj2_name, get_sign(sign2));
+    hid_t      sid1=-1;
+    hid_t      sid2=-1;
+    hid_t      f_tid1=-1;
+    hid_t      f_tid2=-1;                
+    hid_t      m_tid1=-1;
+    hid_t      m_tid2=-1;                
+    size_t     m_size1;
+    size_t     m_size2;               
+    H5T_sign_t sign1;
+    H5T_sign_t sign2;                 
+    int        rank1;
+    int        rank2;
+    hsize_t    nelmts1;
+    hsize_t    nelmts2;
+    hsize_t    dims1[H5S_MAX_RANK];
+    hsize_t    dims2[H5S_MAX_RANK];
+    hsize_t    maxdim1[H5S_MAX_RANK];
+    hsize_t    maxdim2[H5S_MAX_RANK];
+    const char *name1=NULL;            /* relative names */
+    const char *name2=NULL;
+    hsize_t    storage_size1;
+    hsize_t    storage_size2;
+    hsize_t    nfound=0;               /* number of differences found */
+    int        cmp=1;                  /* do diff or not */
+    void       *buf1=NULL;                  
+    void       *buf2=NULL; 
+    void       *sm_buf1=NULL;                
+    void       *sm_buf2=NULL;
+    size_t     need;                   /* bytes needed for malloc */
+    int        i;
+    
+    /* get the dataspace handle */
+    if ( (sid1 = H5Dget_space(did1)) < 0 )
+        goto error;
+    
+    /* get rank */
+    if ( (rank1 = H5Sget_simple_extent_ndims(sid1)) < 0 )
+        goto error;
+    
+    /* get the dataspace handle */
+    if ( (sid2 = H5Dget_space(did2)) < 0 )
+        goto error;
+    
+    /* get rank */
+    if ( (rank2 = H5Sget_simple_extent_ndims(sid2)) < 0 )
+        goto error;
+    
+    /* get dimensions */
+    if ( H5Sget_simple_extent_dims(sid1,dims1,maxdim1) < 0 )
+        goto error;
+    
+    /* get dimensions */
+    if ( H5Sget_simple_extent_dims(sid2,dims2,maxdim2) < 0 )
+        goto error;
+    
+    /*-------------------------------------------------------------------------
+     * get the file data type
+     *-------------------------------------------------------------------------
+     */
+    
+    /* get the data type */
+    if ( (f_tid1 = H5Dget_type(did1)) < 0 )
+        goto error;
+    
+    /* get the data type */
+    if ( (f_tid2 = H5Dget_type(did2)) < 0 )
+        goto error;
+    
+    /*-------------------------------------------------------------------------
+     * check for empty datasets
+     *-------------------------------------------------------------------------
+     */
+    
+    storage_size1=H5Dget_storage_size(did1);
+    storage_size2=H5Dget_storage_size(did2);
+    if (storage_size1<0 || storage_size2<0)
+        goto error;
+    
+    if (storage_size1==0 || storage_size2==0)
+    {
+        if (options->m_verbose && obj1_name && obj2_name)
+            parallel_print("<%s> or <%s> are empty datasets\n", obj1_name, obj2_name);
+        cmp=0;
+        options->not_cmp=1;
+    }
+    
+   /*-------------------------------------------------------------------------
+    * check for comparable TYPE and SPACE
+    *-------------------------------------------------------------------------
+    */
+    
+    if (diff_can_type(f_tid1,
+        f_tid2,
+        rank1,
+        rank2,
+        dims1,
+        dims2,
+        maxdim1,
+        maxdim2,
+        obj1_name,
+        obj2_name,
+        options)!=1)
+    {
+        cmp=0;
+        options->not_cmp=1;
+    }
+    
+   /*-------------------------------------------------------------------------
+    * memory type and sizes
+    *-------------------------------------------------------------------------
+    */
+    if ((m_tid1=h5tools_get_native_type(f_tid1)) < 0)
+        goto error;
+    
+    if ((m_tid2=h5tools_get_native_type(f_tid2)) < 0)
+        goto error;
+    
+    m_size1 = H5Tget_size( m_tid1 );
+    m_size2 = H5Tget_size( m_tid2 );
+    
+   /*-------------------------------------------------------------------------
+    * check for different signed/unsigned types
+    *-------------------------------------------------------------------------
+    */
+    
+    sign1=H5Tget_sign(m_tid1);
+    sign2=H5Tget_sign(m_tid2);
+    if ( sign1 != sign2 )
+    {
+        if (options->m_verbose && obj1_name) 
+        {
+            parallel_print("Comparison not supported: <%s> has sign %s ", obj1_name, get_sign(sign1));
+            parallel_print("and <%s> has sign %s\n", obj2_name, get_sign(sign2));
+        }
+        
+        cmp=0;
+        options->not_cmp=1;
+    }
+    
+   /*-------------------------------------------------------------------------
+    * only attempt to compare if possible
+    *-------------------------------------------------------------------------
+    */
+    if (cmp)
+    {
+        
+       /*-------------------------------------------------------------------------
+        * get number of elements
+        *-------------------------------------------------------------------------
+        */
+        nelmts1 = 1;
+        for (i = 0; i < rank1; i++)
+        {
+            nelmts1 *= dims1[i];
+        }
+        
+        nelmts2 = 1;
+        for (i = 0; i < rank2; i++)
+        {
+            nelmts2 *= dims2[i];
+        }
+        
+        assert(nelmts1==nelmts2);
+        
+       /*-------------------------------------------------------------------------
+        * "upgrade" the smaller memory size
+        *-------------------------------------------------------------------------
+        */
+        
+        if ( m_size1 != m_size2 )
+        {
+            if ( m_size1 < m_size2 )
+            {
+                H5Tclose(m_tid1);
+                
+                if ((m_tid1=h5tools_get_native_type(f_tid2)) < 0)
+                    goto error;
+                
+                m_size1 = H5Tget_size( m_tid1 );
+            }
+            else
+            {
+                H5Tclose(m_tid2);
+                
+                if ((m_tid2=h5tools_get_native_type(f_tid1)) < 0)
+                    goto error;
+                
+                m_size2 = H5Tget_size( m_tid2 );
+            }
+        }
+        assert(m_size1==m_size2);
+        
+        /* print names */
+        if (obj1_name) {
+            name1=diff_basename(obj1_name);
+        }
+        if (obj2_name) {
+            name2=diff_basename(obj2_name);
+        }
+        
+        
+       /*-------------------------------------------------------------------------
+        * read/compare
+        *-------------------------------------------------------------------------
+        */
+        
+        need = (size_t)(nelmts1*m_size1);  /* bytes needed */
+        if ( need < H5TOOLS_MALLOCSIZE)
+        {
+            buf1 = HDmalloc(need);
+            buf2 = HDmalloc(need);
+        }
+        
+        if ( buf1!=NULL && buf2!=NULL)
+        {
+            if ( H5Dread(did1,m_tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf1) < 0 )
+                goto error;
+            if ( H5Dread(did2,m_tid2,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf2) < 0 )
+                goto error;
+            
+            /* array diff */
+            nfound = diff_array(buf1,
+                buf2,
+                nelmts1,
+                (hsize_t)0,
+                rank1,
+                dims1,
+                options,
+                name1,
+                name2,
+                m_tid1,
+                did1,
+                did2);
+        }
+        
+        else /* possibly not enough memory, read/compare by hyperslabs */
+            
+        {
+            size_t        p_type_nbytes = m_size1; /*size of memory type */
+            hsize_t       p_nelmts = nelmts1;      /*total selected elmts */
+            hsize_t       elmtno;                  /*counter  */
+            int           carry;                   /*counter carry value */
+            unsigned int  vl_data = 0;             /*contains VL datatypes */
+            
+            /* stripmine info */
+            hsize_t       sm_size[H5S_MAX_RANK];   /*stripmine size */
+            hsize_t       sm_nbytes;               /*bytes per stripmine */
+            hsize_t       sm_nelmts;               /*elements per stripmine*/
+            hid_t         sm_space;                /*stripmine data space */
+            
+            /* hyperslab info */
+            hsize_t       hs_offset[H5S_MAX_RANK]; /*starting offset */
+            hsize_t       hs_size[H5S_MAX_RANK];   /*size this pass */
+            hsize_t       hs_nelmts;               /*elements in request */
+            hsize_t       zero[8];                 /*vector of zeros */
+            
+            /* check if we have VL data in the dataset's datatype */
+            if (H5Tdetect_class(m_tid1, H5T_VLEN) == TRUE)
+                vl_data = TRUE;
+            
+            /*
+             * determine the strip mine size and allocate a buffer. The strip mine is
+             * a hyperslab whose size is manageable.
+             */
+            sm_nbytes = p_type_nbytes;
+            
+            for (i = rank1; i > 0; --i) 
+            {
+                sm_size[i - 1] = MIN(dims1[i - 1], H5TOOLS_BUFSIZE / sm_nbytes);
+                sm_nbytes *= sm_size[i - 1];
+                assert(sm_nbytes > 0);
+            }
+            
+            sm_buf1 = malloc((size_t)sm_nbytes);
+            sm_buf2 = malloc((size_t)sm_nbytes);
+            
+            sm_nelmts = sm_nbytes / p_type_nbytes;
+            sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
+            
+            /* the stripmine loop */
+            memset(hs_offset, 0, sizeof hs_offset);
+            memset(zero, 0, sizeof zero);
+            
+            for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) 
+            {
+                /* calculate the hyperslab size */
+                if (rank1 > 0) 
+                {
+                    for (i = 0, hs_nelmts = 1; i < rank1; i++) 
+                    {
+                        hs_size[i] = MIN(dims1[i] - hs_offset[i], sm_size[i]);
+                        hs_nelmts *= hs_size[i];
+                    }
+                    if (H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0)
+                        goto error;
+                    if (H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0)
+                        goto error;
+                    if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0)
+                        goto error;
+                } 
+                else 
+                {
+                    H5Sselect_all(sid1);
+                    H5Sselect_all(sid2);
+                    H5Sselect_all(sm_space);
+                    hs_nelmts = 1;
+                } /* rank */
+                
+                if ( H5Dread(did1,m_tid1,sm_space,sid1,H5P_DEFAULT,sm_buf1) < 0 )
+                    goto error;
+                if ( H5Dread(did2,m_tid2,sm_space,sid2,H5P_DEFAULT,sm_buf2) < 0 )
+                    goto error;
+                
+                /* get array differences. in the case of hyperslab read, increment the 
+                   number of differences found in each hyperslab and pass the 
+                   position at the beggining for printing
+                 */
+                nfound += diff_array(sm_buf1,
+                    sm_buf2,
+                    hs_nelmts,
+                    elmtno,
+                    rank1,
+                    dims1,
+                    options,
+                    name1,
+                    name2,
+                    m_tid1,
+                    did1,
+                    did2);
+                
+                /* reclaim any VL memory, if necessary */
+                if(vl_data)
+                {
+                    H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1);
+                    H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf2);
+                }
+                
+                /* calculate the next hyperslab offset */
+                for (i = rank1, carry = 1; i > 0 && carry; --i) 
+                {
+                    hs_offset[i - 1] += hs_size[i - 1];
+                    if (hs_offset[i - 1] == dims1[i - 1])
+                        hs_offset[i - 1] = 0;
+                    else
+                        carry = 0;
+                } /* i */
+            } /* elmtno */
+            
+            H5Sclose(sm_space);
+            /* free */
+            if (sm_buf1!=NULL)
+            {
+                free(sm_buf1);
+                sm_buf1=NULL;
+            }
+            if (sm_buf2!=NULL)
+            {
+                free(sm_buf2);
+                sm_buf2=NULL;
+            }
+            
+  } /* hyperslab read */
+ }/*cmp*/
+ 
+ /*-------------------------------------------------------------------------
+  * compare attributes
+  * the if condition refers to cases when the dataset is a referenced object
+  *-------------------------------------------------------------------------
+  */
+  
+  if (obj1_name)
+      nfound += diff_attr(did1,did2,obj1_name,obj2_name,options);
+  
+ /*-------------------------------------------------------------------------
+  * close
+  *-------------------------------------------------------------------------
+  */
+  
+  /* free */
+  if (buf1!=NULL)
+  {
+      free(buf1);
+      buf1=NULL;
   }
-
-  cmp=0;
-  options->not_cmp=1;
- }
-
-/*-------------------------------------------------------------------------
- * only attempt to compare if possible
- *-------------------------------------------------------------------------
- */
- if (cmp)
- {
-
-/*-------------------------------------------------------------------------
- * get number of elements
- *-------------------------------------------------------------------------
- */
- nelmts1 = 1;
- for (i = 0; i < rank1; i++)
- {
-  nelmts1 *= dims1[i];
- }
-
- nelmts2 = 1;
- for (i = 0; i < rank2; i++)
- {
-  nelmts2 *= dims2[i];
- }
-
- assert(nelmts1==nelmts2);
-
-/*-------------------------------------------------------------------------
- * "upgrade" the smaller memory size
- *-------------------------------------------------------------------------
- */
-
- if ( m_size1 != m_size2 )
- {
-  if ( m_size1 < m_size2 )
+  if (buf2!=NULL)
   {
-   H5Tclose(m_tid1);
-
-   if ((m_tid1=h5tools_get_native_type(f_tid2)) < 0)
-    goto error;
-
-   m_size1 = H5Tget_size( m_tid1 );
+      free(buf2);
+      buf2=NULL;
   }
-  else
+  if (sm_buf1!=NULL)
   {
-   H5Tclose(m_tid2);
-
-   if ((m_tid2=h5tools_get_native_type(f_tid1)) < 0)
-    goto error;
-
-   m_size2 = H5Tget_size( m_tid2 );
+      free(sm_buf1);
+      sm_buf1=NULL;
   }
- }
- assert(m_size1==m_size2);
-
- /* print names */
- if (obj1_name) {
-  name1=diff_basename(obj1_name);
- }
- if (obj2_name) {
-  name2=diff_basename(obj2_name);
- }
-
- 
-/*-------------------------------------------------------------------------
- * read/compare
- *-------------------------------------------------------------------------
- */
-
- need = (size_t)(nelmts1*m_size1);  /* bytes needed */
- if ( need < H5TOOLS_MALLOCSIZE)
- {
-  buf1 = HDmalloc(need);
-  buf2 = HDmalloc(need);
- }
-
- if ( buf1!=NULL && buf2!=NULL)
- {
-  if ( H5Dread(did1,m_tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf1) < 0 )
-   goto error;
-  if ( H5Dread(did2,m_tid2,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf2) < 0 )
-   goto error;
-
-  /* array diff */
-  nfound = diff_array(buf1,
-                      buf2,
-                      nelmts1,
-                      (hsize_t)0,
-                      rank1,
-                      dims1,
-                      options,
-                      name1,
-                      name2,
-                      m_tid1,
-                      did1,
-                      did2);
- }
- 
- else /* possibly not enough memory, read/compare by hyperslabs */
-  
- {
-  size_t        p_type_nbytes = m_size1; /*size of memory type */
-  hsize_t       p_nelmts = nelmts1;      /*total selected elmts */
-  hsize_t       elmtno;                  /*counter  */
-  int           carry;                   /*counter carry value */
-  unsigned int  vl_data = 0;             /*contains VL datatypes */
-  
-  /* stripmine info */
-  hsize_t       sm_size[H5S_MAX_RANK];   /*stripmine size */
-  hsize_t       sm_nbytes;               /*bytes per stripmine */
-  hsize_t       sm_nelmts;               /*elements per stripmine*/
-  hid_t         sm_space;                /*stripmine data space */
-  
-  /* hyperslab info */
-  hsize_t       hs_offset[H5S_MAX_RANK]; /*starting offset */
-  hsize_t       hs_size[H5S_MAX_RANK];   /*size this pass */
-  hsize_t       hs_nelmts;               /*elements in request */
-  hsize_t       zero[8];                 /*vector of zeros */
-  
-  /* check if we have VL data in the dataset's datatype */
-  if (H5Tdetect_class(m_tid1, H5T_VLEN) == TRUE)
-   vl_data = TRUE;
-  
-  /*
-   * determine the strip mine size and allocate a buffer. The strip mine is
-   * a hyperslab whose size is manageable.
-   */
-  sm_nbytes = p_type_nbytes;
-  
-  for (i = rank1; i > 0; --i) {
-   sm_size[i - 1] = MIN(dims1[i - 1], H5TOOLS_BUFSIZE / sm_nbytes);
-   sm_nbytes *= sm_size[i - 1];
-   assert(sm_nbytes > 0);
+  if (sm_buf2!=NULL)
+  {
+      free(sm_buf2);
+      sm_buf2=NULL;
   }
   
-  sm_buf1 = malloc((size_t)sm_nbytes);
-  sm_buf2 = malloc((size_t)sm_nbytes);
+  H5E_BEGIN_TRY 
+  {
+      H5Sclose(sid1);
+      H5Sclose(sid2);
+      H5Tclose(f_tid1);
+      H5Tclose(f_tid2);
+      H5Tclose(m_tid1);
+      H5Tclose(m_tid2);
+  } H5E_END_TRY;
   
-  sm_nelmts = sm_nbytes / p_type_nbytes;
-  sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
+  return nfound;
   
-  /* the stripmine loop */
-  memset(hs_offset, 0, sizeof hs_offset);
-  memset(zero, 0, sizeof zero);
-
-  for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) 
-  {
-   /* calculate the hyperslab size */
-   if (rank1 > 0) 
-   {
-    for (i = 0, hs_nelmts = 1; i < rank1; i++) 
-    {
-     hs_size[i] = MIN(dims1[i] - hs_offset[i], sm_size[i]);
-     hs_nelmts *= hs_size[i];
-    }
-    if (H5Sselect_hyperslab(sid1, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0)
-     goto error;
-    if (H5Sselect_hyperslab(sid2, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0)
-     goto error;
-    if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0)
-     goto error;
-   } 
-   else 
-   {
-    H5Sselect_all(sid1);
-    H5Sselect_all(sid2);
-    H5Sselect_all(sm_space);
-    hs_nelmts = 1;
-   } /* rank */
- 
-   if ( H5Dread(did1,m_tid1,sm_space,sid1,H5P_DEFAULT,sm_buf1) < 0 )
-    goto error;
-   if ( H5Dread(did2,m_tid2,sm_space,sid2,H5P_DEFAULT,sm_buf2) < 0 )
-    goto error;
-   
-   /* get array differences. in the case of hyperslab read, increment the number of differences 
-      found in each hyperslab and pass the position at the beggining for printing */
-   nfound += diff_array(sm_buf1,
-                        sm_buf2,
-                        hs_nelmts,
-                        elmtno,
-                        rank1,
-                        dims1,
-                        options,
-                        name1,
-                        name2,
-                        m_tid1,
-                        did1,
-                        did2);
-
-   /* reclaim any VL memory, if necessary */
-   if(vl_data)
-   {
-    H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1);
-    H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf2);
-   }
-   
-   /* calculate the next hyperslab offset */
-   for (i = rank1, carry = 1; i > 0 && carry; --i) 
-   {
-    hs_offset[i - 1] += hs_size[i - 1];
-    if (hs_offset[i - 1] == dims1[i - 1])
-     hs_offset[i - 1] = 0;
-    else
-     carry = 0;
-   } /* i */
-  } /* elmtno */
+error:
+  options->err_stat=1;
   
-  H5Sclose(sm_space);
   /* free */
+  if (buf1!=NULL)
+  {
+      free(buf1);
+      buf1=NULL;
+  }
+  if (buf2!=NULL)
+  {
+      free(buf2);
+      buf2=NULL;
+  }
   if (sm_buf1!=NULL)
   {
-   free(sm_buf1);
-   sm_buf1=NULL;
+      free(sm_buf1);
+      sm_buf1=NULL;
   }
   if (sm_buf2!=NULL)
   {
-   free(sm_buf2);
-   sm_buf2=NULL;
+      free(sm_buf2);
+      sm_buf2=NULL;
   }
   
- } /* hyperslab read */
- }/*cmp*/
- 
-/*-------------------------------------------------------------------------
- * compare attributes
- * the if condition refers to cases when the dataset is a referenced object
- *-------------------------------------------------------------------------
- */
-
- if (obj1_name)
-  nfound += diff_attr(did1,did2,obj1_name,obj2_name,options);
-
-/*-------------------------------------------------------------------------
- * close
- *-------------------------------------------------------------------------
- */
- 
- /* free */
- if (buf1!=NULL)
- {
-  free(buf1);
-  buf1=NULL;
- }
- if (buf2!=NULL)
- {
-  free(buf2);
-  buf2=NULL;
- }
- if (sm_buf1!=NULL)
- {
-  free(sm_buf1);
-  sm_buf1=NULL;
- }
- if (sm_buf2!=NULL)
- {
-  free(sm_buf2);
-  sm_buf2=NULL;
- }
-
- H5E_BEGIN_TRY {
-  H5Sclose(sid1);
-  H5Sclose(sid2);
-  H5Tclose(f_tid1);
-  H5Tclose(f_tid2);
-  H5Tclose(m_tid1);
-  H5Tclose(m_tid2);
- } H5E_END_TRY;
-
- return nfound;
-
-error:
- options->err_stat=1;
- 
- /* free */
- if (buf1!=NULL)
- {
-  free(buf1);
-  buf1=NULL;
- }
- if (buf2!=NULL)
- {
-  free(buf2);
-  buf2=NULL;
- }
- if (sm_buf1!=NULL)
- {
-  free(sm_buf1);
-  sm_buf1=NULL;
- }
- if (sm_buf2!=NULL)
- {
-  free(sm_buf2);
-  sm_buf2=NULL;
- }
-
- /* disable error reporting */
- H5E_BEGIN_TRY {
-  H5Sclose(sid1);
-  H5Sclose(sid2);
-  H5Tclose(f_tid1);
-  H5Tclose(f_tid2);
-  H5Tclose(m_tid1);
-  H5Tclose(m_tid2);
-   /* enable error reporting */
- } H5E_END_TRY;
-
- return nfound;
+  /* disable error reporting */
+  H5E_BEGIN_TRY 
+  {
+      H5Sclose(sid1);
+      H5Sclose(sid2);
+      H5Tclose(f_tid1);
+      H5Tclose(f_tid2);
+      H5Tclose(m_tid1);
+      H5Tclose(m_tid2);
+      /* enable error reporting */
+  } H5E_END_TRY;
+  
+  return nfound;
 }
 
 /*-------------------------------------------------------------------------
@@ -677,163 +663,164 @@ int diff_can_type( hid_t       f_tid1, /* file data type */
                    const char  *obj2_name,
                    diff_opt_t  *options )
 {
-
-
- H5T_class_t  tclass1;
- H5T_class_t  tclass2;
- int          maxdim_diff=0;          /* maximum dimensions are different */
- int          dim_diff=0;             /* current dimensions are different */
- int          i;
-
-/*-------------------------------------------------------------------------
- * check for the same class
- *-------------------------------------------------------------------------
- */
-
- if ((tclass1=H5Tget_class(f_tid1)) < 0)
-  return -1;
-
- if ((tclass2=H5Tget_class(f_tid2)) < 0)
-  return -1;
-
- if ( tclass1 != tclass2 )
- {
-  if (options->m_verbose && obj1_name) {
-   printf("Comparison not possible: <%s> is of class %s and <%s> is of class %s\n",
-    obj1_name, get_class(tclass1),
-    obj2_name, get_class(tclass2) );
-  }
-  return 0;
- }
-
-/*-------------------------------------------------------------------------
- * check for non supported classes
- *-------------------------------------------------------------------------
- */
-
- assert(tclass1==tclass2);
- switch (tclass1)
- {
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_COMPOUND:
- case H5T_STRING:
- case H5T_ARRAY:
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- case H5T_ENUM:
- case H5T_VLEN:
- case H5T_REFERENCE:
-
-  break;
-
- default: /*H5T_TIME */
-  if (options->m_verbose && obj1_name )
-   printf("Comparison not supported: <%s> and <%s> are of class %s\n",
-    obj1_name,obj2_name,get_class(tclass2) );
-  return 0;
- }
-
-/*-------------------------------------------------------------------------
- * check for equal file datatype; warning only
- *-------------------------------------------------------------------------
- */
-
- if ( (H5Tequal(f_tid1, f_tid2)==0) && options->m_verbose && obj1_name)
- {
-  printf("Warning: different storage datatype\n");
-  printf("<%s> has file datatype ", obj1_name);
-  print_type(f_tid1);
-  printf("\n");
-  printf("<%s> has file datatype ", obj2_name);
-  print_type(f_tid2);
-  printf("\n");
- }
-
-/*-------------------------------------------------------------------------
- * check for the same rank
- *-------------------------------------------------------------------------
- */
-
- if ( rank1 != rank2 )
- {
-  if (options->m_verbose && obj1_name) {
-   printf("Comparison not supported: <%s> has rank %d, dimensions ", obj1_name, rank1);
-   print_dimensions(rank1,dims1);
-   printf(", max dimensions ");
-   print_dimensions(rank1,maxdim1);
-   printf("\n" );
-   printf("<%s> has rank %d, dimensions ", obj2_name, rank2);
-   print_dimensions(rank2,dims2);
-   printf(", max dimensions ");
-   print_dimensions(rank2,maxdim2);
-  }
-  return 0;
- }
-
-/*-------------------------------------------------------------------------
- * check for different dimensions
- *-------------------------------------------------------------------------
- */
-
- assert(rank1==rank2);
- for ( i=0; i<rank1; i++)
- {
-  if (maxdim1 && maxdim2)
-  {
-   if ( maxdim1[i] != maxdim2[i] )
-    maxdim_diff=1;
-  }
-  if ( dims1[i] != dims2[i] )
-   dim_diff=1;
- }
-
-/*-------------------------------------------------------------------------
- * current dimensions
- *-------------------------------------------------------------------------
- */
-
- if (dim_diff==1)
- {
-  if (options->m_verbose && obj1_name) {
-   printf("Comparison not supported: <%s> has rank %d, dimensions ", obj1_name, rank1);
-   print_dimensions(rank1,dims1);
-   if (maxdim1 && maxdim2) {
-    printf(", max dimensions ");
-    print_dimensions(rank1,maxdim1);
-    printf("\n" );
-    printf("<%s> has rank %d, dimensions ", obj2_name, rank2);
-    print_dimensions(rank2,dims2);
-    printf(", max dimensions ");
-    print_dimensions(rank2,maxdim2);
-   }
-  }
-  return 0;
- }
-
-/*-------------------------------------------------------------------------
- * maximum dimensions; just give a warning
- *-------------------------------------------------------------------------
- */
- if (maxdim1 && maxdim2 && maxdim_diff==1 && obj1_name )
- {
-  if (options->m_verbose) {
-   printf( "Warning: different maximum dimensions\n");
-   printf("<%s> has max dimensions ", obj1_name);
-   print_dimensions(rank1,maxdim1);
-   printf("\n");
-   printf("<%s> has max dimensions ", obj2_name);
-   print_dimensions(rank2,maxdim2);
-   printf("\n");
-  }
- }
-
- return 1;
+    H5T_class_t  tclass1;
+    H5T_class_t  tclass2;
+    int          maxdim_diff=0;          /* maximum dimensions are different */
+    int          dim_diff=0;             /* current dimensions are different */
+    int          i;
+    
+   /*-------------------------------------------------------------------------
+    * check for the same class
+    *-------------------------------------------------------------------------
+    */
+    
+    if ((tclass1=H5Tget_class(f_tid1)) < 0)
+        return -1;
+    
+    if ((tclass2=H5Tget_class(f_tid2)) < 0)
+        return -1;
+    
+    if ( tclass1 != tclass2 )
+    {
+        if (options->m_verbose && obj1_name) 
+        {
+            printf("Comparison not possible: <%s> is of class %s and <%s> is of class %s\n",
+                obj1_name, get_class(tclass1),
+                obj2_name, get_class(tclass2) );
+        }
+        return 0;
+    }
+    
+   /*-------------------------------------------------------------------------
+    * check for non supported classes
+    *-------------------------------------------------------------------------
+    */
+    
+    assert(tclass1==tclass2);
+    switch (tclass1)
+    {
+    case H5T_INTEGER:
+    case H5T_FLOAT:
+    case H5T_COMPOUND:
+    case H5T_STRING:
+    case H5T_ARRAY:
+    case H5T_BITFIELD:
+    case H5T_OPAQUE:
+    case H5T_ENUM:
+    case H5T_VLEN:
+    case H5T_REFERENCE:
+        
+        break;
+        
+    default: /*H5T_TIME */
+        if (options->m_verbose && obj1_name )
+            printf("Comparison not supported: <%s> and <%s> are of class %s\n",
+            obj1_name,obj2_name,get_class(tclass2) );
+        return 0;
+    }
+    
+   /*-------------------------------------------------------------------------
+    * check for equal file datatype; warning only
+    *-------------------------------------------------------------------------
+    */
+    
+    if ( (H5Tequal(f_tid1, f_tid2)==0) && options->m_verbose && obj1_name)
+    {
+        printf("Warning: different storage datatype\n");
+        printf("<%s> has file datatype ", obj1_name);
+        print_type(f_tid1);
+        printf("\n");
+        printf("<%s> has file datatype ", obj2_name);
+        print_type(f_tid2);
+        printf("\n");
+    }
+    
+   /*-------------------------------------------------------------------------
+    * check for the same rank
+    *-------------------------------------------------------------------------
+    */
+    
+    if ( rank1 != rank2 )
+    {
+        if (options->m_verbose && obj1_name) 
+        {
+            printf("Comparison not supported: <%s> has rank %d, dimensions ", obj1_name, rank1);
+            print_dimensions(rank1,dims1);
+            printf(", max dimensions ");
+            print_dimensions(rank1,maxdim1);
+            printf("\n" );
+            printf("<%s> has rank %d, dimensions ", obj2_name, rank2);
+            print_dimensions(rank2,dims2);
+            printf(", max dimensions ");
+            print_dimensions(rank2,maxdim2);
+        }
+        return 0;
+    }
+    
+   /*-------------------------------------------------------------------------
+    * check for different dimensions
+    *-------------------------------------------------------------------------
+    */
+    
+    assert(rank1==rank2);
+    for ( i=0; i<rank1; i++)
+    {
+        if (maxdim1 && maxdim2)
+        {
+            if ( maxdim1[i] != maxdim2[i] )
+                maxdim_diff=1;
+        }
+        if ( dims1[i] != dims2[i] )
+            dim_diff=1;
+    }
+    
+   /*-------------------------------------------------------------------------
+    * current dimensions
+    *-------------------------------------------------------------------------
+    */
+    
+    if (dim_diff==1)
+    {
+        if (options->m_verbose && obj1_name) 
+        {
+            printf("Comparison not supported: <%s> has rank %d, dimensions ", obj1_name, rank1);
+            print_dimensions(rank1,dims1);
+            if (maxdim1 && maxdim2) 
+            {
+                printf(", max dimensions ");
+                print_dimensions(rank1,maxdim1);
+                printf("\n" );
+                printf("<%s> has rank %d, dimensions ", obj2_name, rank2);
+                print_dimensions(rank2,dims2);
+                printf(", max dimensions ");
+                print_dimensions(rank2,maxdim2);
+            }
+        }
+        return 0;
+    }
+    
+   /*-------------------------------------------------------------------------
+    * maximum dimensions; just give a warning
+    *-------------------------------------------------------------------------
+    */
+    if (maxdim1 && maxdim2 && maxdim_diff==1 && obj1_name )
+    {
+        if (options->m_verbose) 
+        {
+            printf( "Warning: different maximum dimensions\n");
+            printf("<%s> has max dimensions ", obj1_name);
+            print_dimensions(rank1,maxdim1);
+            printf("\n");
+            printf("<%s> has max dimensions ", obj2_name);
+            print_dimensions(rank2,maxdim2);
+            printf("\n");
+        }
+    }
+    
+    return 1;
 }
 
 
-
-
 /*-------------------------------------------------------------------------
  * Function: print_sizes
  *
@@ -887,3 +874,29 @@ void print_sizes( const char *obj1,
  printf("\n");
 }
 #endif /* H5DIFF_DEBUG */
+
+/*-------------------------------------------------------------------------
+ * Function: print_size
+ *
+ * Purpose: print dimensions 
+ *
+ *-------------------------------------------------------------------------
+ */
+#if defined (H5DIFF_DEBUG)
+static void
+print_size (int rank, hsize_t *dims)
+{
+    int i;
+
+    parallel_print("[" );
+    for ( i = 0; i < rank-1; i++)
+    {
+        parallel_print("%"H5_PRINTF_LL_WIDTH"u", (unsigned long_long)dims[i]);
+        parallel_print("x");
+    }
+    parallel_print("%"H5_PRINTF_LL_WIDTH"u", (unsigned long_long)dims[rank-1]);
+    parallel_print("]\n" );
+    
+}
+#endif /* H5DIFF_DEBUG */
+