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author | Allen Byrne <50328838+byrnHDF@users.noreply.github.com> | 2023-04-18 18:21:34 (GMT) |
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committer | GitHub <noreply@github.com> | 2023-04-18 18:21:34 (GMT) |
commit | becd4525623de1aabbfae48e6cdf0381959fbe88 (patch) | |
tree | 7b18c4b03e2430bfe8b0cef4e83d1de75c8b9abf /tools/lib | |
parent | 298d7218d5cfbc43b33167e5edf2549c5a9bd839 (diff) | |
download | hdf5-becd4525623de1aabbfae48e6cdf0381959fbe88.zip hdf5-becd4525623de1aabbfae48e6cdf0381959fbe88.tar.gz hdf5-becd4525623de1aabbfae48e6cdf0381959fbe88.tar.bz2 |
Add no subsets option to h5diff like h5dump (#2759)
Diffstat (limited to 'tools/lib')
-rw-r--r-- | tools/lib/h5diff.h | 45 | ||||
-rw-r--r-- | tools/lib/h5tools_utils.c | 122 | ||||
-rw-r--r-- | tools/lib/h5tools_utils.h | 3 |
3 files changed, 148 insertions, 22 deletions
diff --git a/tools/lib/h5diff.h b/tools/lib/h5diff.h index 917ea6a..d16c855 100644 --- a/tools/lib/h5diff.h +++ b/tools/lib/h5diff.h @@ -51,28 +51,29 @@ typedef struct { int mode_quiet; /* quiet mode: no output at all */ int mode_report; /* report mode: print the data */ int mode_verbose; /* verbose mode: print the data, list of objcets, warnings */ - int mode_verbose_level; /* control verbose details */ - int mode_list_not_cmp; /* list not comparable messages */ - int print_header; /* print header */ - int print_percentage; /* print percentage */ - int print_dims; /* print dimension index */ - int delta_bool; /* delta, absolute value to compare */ - double delta; /* delta value */ - int use_system_epsilon; /* flag to use system epsilon (1 or 0) */ - int percent_bool; /* relative error to compare*/ - double percent; /* relative error value */ - hbool_t follow_links; /* follow symbolic links */ - int no_dangle_links; /* return error when find dangling link */ - int cmn_objs; /* do we have common objects */ - int not_cmp; /* are the objects comparable */ - int contents; /* equal contents */ - int do_nans; /* consider Nans while diffing floats */ - int exclude_path; /* exclude path to an object */ - int exclude_attr_path; /* exclude path to an object */ - struct exclude_path_list *exclude; /* keep exclude path list */ - struct exclude_path_list *exclude_attr; /* keep exclude attribute list */ - int count_bool; /* count, compare up to count */ - hsize_t count; /* count value */ + int mode_verbose_level; /* control verbose details */ + int mode_list_not_cmp; /* list not comparable messages */ + int print_header; /* print header */ + int print_percentage; /* print percentage */ + int print_dims; /* print dimension index */ + int delta_bool; /* delta, absolute value to compare */ + double delta; /* delta value */ + int use_system_epsilon; /* flag to use system epsilon (1 or 0) */ + int percent_bool; /* relative error to compare*/ + double percent; /* relative error value */ + hbool_t follow_links; /* follow symbolic links */ + int no_dangle_links; /* return error when find dangling link */ + int cmn_objs; /* do we have common objects */ + int not_cmp; /* are the objects comparable */ + int contents; /* equal contents */ + int do_nans; /* consider Nans while diffing floats */ + int disable_compact_subset; /* disable compact form of subset notation */ + int exclude_path; /* exclude path to an object */ + int exclude_attr_path; /* exclude path to an object */ + struct exclude_path_list *exclude; /* keep exclude path list */ + struct exclude_path_list *exclude_attr; /* keep exclude attribute list */ + int count_bool; /* count, compare up to count */ + hsize_t count; /* count value */ diff_err_t err_stat; /* an error occurred (2, error, 1, differences, 0, no error) */ hsize_t nelmts; /* total number of elements */ hsize_t hs_nelmts; /* number of elements to read at a time*/ diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index c8b0644..8a9d806 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -157,6 +157,128 @@ help_ref_msg(FILE *output) HDfprintf(output, "see the <%s> entry in the 'HDF5 Reference Manual'.\n", h5tools_getprogname()); } +/*------------------------------------------------------------------------- + * Function: parse_hsize_list + * + * Purpose: Parse a list of comma or space separated integers and return + * them in a list. The string being passed into this function + * should be at the start of the list you want to parse. You are + * responsible for freeing the array returned from here. + * + * Lists in the so-called "terse" syntax are separated by + * semicolons (;). The lists themselves can be separated by + * either commas (,) or white spaces. + * + * Return: <none> + *------------------------------------------------------------------------- + */ +void +parse_hsize_list(const char *h_list, subset_d *d) +{ + hsize_t *p_list; + const char *ptr; + unsigned int size_count = 0; + unsigned int i = 0; + unsigned int last_digit = 0; + + if (!h_list || !*h_list || *h_list == ';') + return; + + H5TOOLS_START_DEBUG(" - h_list:%s", h_list); + /* count how many integers do we have */ + for (ptr = h_list; ptr && *ptr && *ptr != ';' && *ptr != ']'; ptr++) + if (HDisdigit(*ptr)) { + if (!last_digit) + /* the last read character wasn't a digit */ + size_count++; + + last_digit = 1; + } + else + last_digit = 0; + + if (size_count == 0) { + /* there aren't any integers to read */ + H5TOOLS_ENDDEBUG("No integers to read"); + return; + } + H5TOOLS_DEBUG("Number integers to read=%ld", size_count); + + /* allocate an array for the integers in the list */ + if ((p_list = (hsize_t *)HDcalloc(size_count, sizeof(hsize_t))) == NULL) + H5TOOLS_INFO("Unable to allocate space for subset data"); + + for (ptr = h_list; i < size_count && ptr && *ptr && *ptr != ';' && *ptr != ']'; ptr++) + if (HDisdigit(*ptr)) { + /* we should have an integer now */ + p_list[i++] = (hsize_t)HDstrtoull(ptr, NULL, 0); + + while (HDisdigit(*ptr)) + /* scroll to end of integer */ + ptr++; + } + d->data = p_list; + d->len = size_count; + H5TOOLS_ENDDEBUG(" "); +} + +/*------------------------------------------------------------------------- + * Function: parse_subset_params + * + * Purpose: Parse the so-called "terse" syntax for specifying subsetting parameters. + * + * Return: Success: struct subset_t object + * Failure: NULL + *------------------------------------------------------------------------- + */ +struct subset_t * +parse_subset_params(const char *dset) +{ + struct subset_t *s = NULL; + char *brace; + const char *q_dset; + + H5TOOLS_START_DEBUG(" - dset:%s", dset); + /* if dset name is quoted wait till after second quote to look for subset brackets */ + if (*dset == '"') + q_dset = HDstrchr(dset, '"'); + else + q_dset = dset; + if ((brace = HDstrrchr(q_dset, '[')) != NULL) { + *brace++ = '\0'; + + s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t)); + parse_hsize_list(brace, &s->start); + + while (*brace && *brace != ';') + brace++; + + if (*brace) + brace++; + + parse_hsize_list(brace, &s->stride); + + while (*brace && *brace != ';') + brace++; + + if (*brace) + brace++; + + parse_hsize_list(brace, &s->count); + + while (*brace && *brace != ';') + brace++; + + if (*brace) + brace++; + + parse_hsize_list(brace, &s->block); + } + H5TOOLS_ENDDEBUG(" "); + + return s; +} + /***************************************************************************** * * Function: parse_tuple() diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h index f28456e..a4fde5c 100644 --- a/tools/lib/h5tools_utils.h +++ b/tools/lib/h5tools_utils.h @@ -67,9 +67,12 @@ typedef struct find_objs_t { H5TOOLS_DLLVAR unsigned h5tools_nCols; /*max number of columns for outputting */ /* Definitions of useful routines */ +H5TOOLS_DLL struct subset_t *parse_subset_params(const char *dset); + H5TOOLS_DLL void indentation(unsigned); H5TOOLS_DLL void print_version(const char *progname); H5TOOLS_DLL void parallel_print(const char *format, ...) H5_ATTR_FORMAT(printf, 1, 2); +H5TOOLS_DLL void parse_hsize_list(const char *h_list, subset_d *d); H5TOOLS_DLL herr_t parse_tuple(const char *start, int sep, char **cpy_out, unsigned *nelems, char ***ptrs_out); H5TOOLS_DLL void error_msg(const char *fmt, ...) H5_ATTR_FORMAT(printf, 1, 2); |