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authorPedro Vicente Nunes <pvn@hdfgroup.org>2006-06-26 14:41:59 (GMT)
committerPedro Vicente Nunes <pvn@hdfgroup.org>2006-06-26 14:41:59 (GMT)
commit8846157e5985458fd0a3ddb47658a14d10fb97b2 (patch)
treef542f006bbe7cfa82455610de5e329b3667c6284 /tools/lib
parent4dfad81062f0b195ee9fd10f0b4e5ba2f6056aeb (diff)
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[svn-r12437] Purpose:
new feature. h5dump output of binary data Description: a new switch -b FILE_NAME that dumps the contents of memory data to file FILE_NAME in binary form new program binread.c that reads the contents of this file and outputs it to stdout added a test for the h5dump shell script that does a run of -b the binread.c program reads the data used in this run, usage is ./binread FILE_NAME Solution: Platforms tested: linux solaris AIX Misc. update:
Diffstat (limited to 'tools/lib')
-rw-r--r--tools/lib/h5tools.c477
-rw-r--r--tools/lib/h5tools.h4
2 files changed, 470 insertions, 11 deletions
diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c
index 01f0fca..a38a435 100644
--- a/tools/lib/h5tools.c
+++ b/tools/lib/h5tools.c
@@ -46,6 +46,11 @@
/* global variables */
int compound_data;
FILE *rawdatastream; /* should initialize to stdout but gcc moans about it */
+int bin_output; /* binary output */
+
+/* local prototypes */
+static int do_bin_output(FILE *stream, hsize_t nelmts, hid_t tid, void *_mem);
+static int render_bin_output(FILE *stream, hid_t tid, void *_mem);
/* module-scoped variables */
static int h5tools_init_g; /* if h5tools lib has been initialized */
@@ -558,16 +563,24 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai
*break after we see a number equal
*to the ctx->size_last_dim. */
- /* Setup */
- memset(&buffer, 0, sizeof(h5tools_str_t));
- size = H5Tget_size(type);
-
- if (info->line_ncols > 0)
- ncols = info->line_ncols;
-
- h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0);
-
- for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++) {
+ /* binary dump */
+ if (bin_output)
+ {
+ do_bin_output(stream,nelmts,type,_mem);
+ bin_output=0;
+ }
+ else
+ {
+ /* Setup */
+ memset(&buffer, 0, sizeof(h5tools_str_t));
+ size = H5Tget_size(type);
+
+ if (info->line_ncols > 0)
+ ncols = info->line_ncols;
+
+ h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0);
+
+ for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++) {
/* Render the element */
h5tools_str_reset(&buffer);
h5tools_str_sprint(&buffer, info, container, type, mem + i * size, ctx);
@@ -688,6 +701,9 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai
}
h5tools_str_close(&buffer);
+
+ }/* else bin */
+
}
/*-------------------------------------------------------------------------
@@ -1284,3 +1300,444 @@ void init_acc_pos(h5tools_context_t *ctx, hsize_t *dims)
ctx->pos[i]=0;
}
+
+/*-------------------------------------------------------------------------
+ * Function: do_bin_output
+ *
+ * Purpose: Dump memory buffer to a binary file stream
+ *
+ * Return: Success: SUCCEED
+ * Failure: FAIL
+ *
+ * Programmer: Pedro Vicente Nunes
+ * Friday, June 2, 2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static
+int do_bin_output(FILE *stream, hsize_t nelmts, hid_t tid, void *_mem)
+{
+ unsigned char *mem = (unsigned char*)_mem;
+ size_t size; /* datum size */
+ hsize_t i; /* element counter */
+
+ size = H5Tget_size(tid);
+
+ for (i = 0; i < nelmts; i++)
+ {
+ if (render_bin_output(stream,tid,mem + i * size)<0)
+ {
+ printf("\nError in writing binary stream\n");
+ return FAIL;
+ }
+ }
+
+ return SUCCEED;
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: render_bin_output
+ *
+ * Purpose: Write one element of memory buffer to a binary file stream
+ *
+ * Return: Success: SUCCEED
+ * Failure: FAIL
+ *
+ * Programmer: Pedro Vicente Nunes
+ * Friday, June 2, 2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static
+int render_bin_output(FILE *stream, hid_t tid, void *_mem)
+{
+#if 0
+ #define DEBUG_H5DUMP_BIN 1
+#endif
+ unsigned char *mem = (unsigned char*)_mem;
+ size_t size; /* datum size */
+ float tempfloat;
+ double tempdouble;
+ unsigned long_long tempullong;
+ long_long templlong;
+ unsigned long tempulong;
+ long templong;
+ unsigned int tempuint;
+ int tempint;
+ unsigned short tempushort;
+ short tempshort;
+ unsigned char tempuchar;
+ char tempschar;
+#if H5_SIZEOF_LONG_DOUBLE !=0
+ long double templdouble;
+#endif
+#if DEBUG_H5DUMP_BIN
+ static char fmt_llong[8], fmt_ullong[8];
+ if (!fmt_llong[0]) {
+ sprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH);
+ sprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH);
+ }
+#endif
+
+ size = H5Tget_size(tid);
+
+ if (H5Tequal(tid, H5T_NATIVE_FLOAT))
+ {
+ memcpy(&tempfloat, mem, sizeof(float));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%g ", tempfloat);
+#else
+ if (1 != fwrite(&tempfloat, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_DOUBLE))
+ {
+ memcpy(&tempdouble, mem, sizeof(double));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%g ", tempdouble);
+#else
+ if (1 != fwrite(&tempdouble, size, 1, stream))
+ return FAIL;
+#endif
+ }
+#if H5_SIZEOF_LONG_DOUBLE !=0
+ else if (H5Tequal(tid, H5T_NATIVE_LDOUBLE))
+ {
+ memcpy(&templdouble, mem, sizeof(long double));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%Lf ", templdouble);
+#else
+ if (1 != fwrite(&templdouble, size, 1, stream))
+ return FAIL;
+#endif
+ }
+#endif
+ else if (H5T_STRING == H5Tget_class(tid))
+ {
+ unsigned int i;
+ H5T_str_t pad;
+ char *s;
+
+ pad = H5Tget_strpad(tid);
+
+ if(H5Tis_variable_str(tid))
+ {
+ s = *(char**)mem;
+ if(s!=NULL)
+ size = HDstrlen(s);
+ }
+ else
+ {
+ s = mem;
+ size = H5Tget_size(tid);
+ }
+ for (i=0; i<size && (s[i] || pad!=H5T_STR_NULLTERM); i++)
+ {
+ memcpy(&tempuchar, &s[i], sizeof(unsigned char));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%d", tempuchar);
+#else
+ if (1 != fwrite(&tempuchar, size, 1, stream))
+ return FAIL;
+#endif
+ } /* i */
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_INT))
+ {
+ memcpy(&tempint, mem, sizeof(int));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%d ", tempint);
+#else
+ if (1 != fwrite(&tempint, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_UINT))
+ {
+ memcpy(&tempuint, mem, sizeof(unsigned int));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%u ", tempuint);
+#else
+ if (1 != fwrite(&tempuint, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_SCHAR))
+ {
+ memcpy(&tempschar, mem, sizeof(char));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%d ", tempschar);
+#else
+ if (1 != fwrite(&tempschar, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_UCHAR))
+ {
+ memcpy(&tempuchar, mem, sizeof(unsigned char));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%u ", tempuchar);
+#else
+ if (1 != fwrite(&tempuchar, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_SHORT))
+ {
+ memcpy(&tempshort, mem, sizeof(short));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%d ", tempshort);
+#else
+ if (1 != fwrite(&tempshort, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_USHORT))
+ {
+ memcpy(&tempushort, mem, sizeof(unsigned short));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%u ", tempushort);
+#else
+ if (1 != fwrite(&tempushort, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_LONG))
+ {
+ memcpy(&templong, mem, sizeof(long));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%ld ", templong);
+#else
+ if (1 != fwrite(&templong, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_ULONG))
+ {
+ memcpy(&tempulong, mem, sizeof(unsigned long));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%lu ", tempulong);
+#else
+ if (1 != fwrite(&tempulong, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_LLONG))
+ {
+ memcpy(&templlong, mem, sizeof(long_long));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, fmt_llong, templlong);
+#else
+ if (1 != fwrite(&templlong, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_ULLONG))
+ {
+ memcpy(&tempullong, mem, sizeof(unsigned long_long));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, fmt_ullong, tempullong);
+#else
+ if (1 != fwrite(&tempullong, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_HSSIZE))
+ {
+ if (sizeof(hssize_t) == sizeof(int))
+ {
+ memcpy(&tempint, mem, sizeof(int));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%d ", tempint);
+#else
+ if (1 != fwrite(&tempint, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (sizeof(hssize_t) == sizeof(long))
+ {
+ memcpy(&templong, mem, sizeof(long));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%ld ", templong);
+#else
+ if (1 != fwrite(&templong, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else
+ {
+ memcpy(&templlong, mem, sizeof(long_long));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, fmt_llong, templlong);
+#else
+ if (1 != fwrite(&templlong, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ }
+ else if (H5Tequal(tid, H5T_NATIVE_HSIZE))
+ {
+ if (sizeof(hsize_t) == sizeof(int))
+ {
+ memcpy(&tempuint, mem, sizeof(unsigned int));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%u ", tempuint);
+#else
+ if (1 != fwrite(&tempuint, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else if (sizeof(hsize_t) == sizeof(long))
+ {
+ memcpy(&tempulong, mem, sizeof(unsigned long));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%lu ", tempulong);
+#else
+ if (1 != fwrite(&tempulong, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else
+ {
+ memcpy(&tempullong, mem, sizeof(unsigned long_long));
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, fmt_ullong, tempullong);
+#else
+ if (1 != fwrite(&tempullong, size, 1, stream))
+ return FAIL;
+#endif
+ }
+ }
+ else if (H5Tget_class(tid) == H5T_COMPOUND)
+ {
+ unsigned j;
+ hid_t memb;
+ unsigned nmembs;
+ size_t offset;
+
+ nmembs = H5Tget_nmembers(tid);
+
+ for (j = 0; j < nmembs; j++)
+ {
+ offset = H5Tget_member_offset(tid, j);
+ memb = H5Tget_member_type(tid, j);
+
+ if (render_bin_output(stream,memb,mem + offset)<0)
+ return FAIL;
+
+ H5Tclose(memb);
+ }
+ }
+ else if (H5Tget_class(tid) == H5T_ENUM)
+ {
+ unsigned int i;
+ if (1==size)
+ {
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "0x%02x", mem[0]);
+#else
+ if (1 != fwrite(&mem[0], size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else
+ {
+ for (i = 0; i < size; i++)
+ {
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%s%02x", i?":":"", mem[i]);
+#else
+ if (1 != fwrite(&mem[i], sizeof(char), 1, stream))
+ return FAIL;
+#endif
+ } /*i*/
+ }/*else 1 */
+ }
+ else if (H5Tget_class(tid) == H5T_ARRAY)
+ {
+ int k, ndims;
+ hsize_t i, dims[H5S_MAX_RANK], temp_nelmts, nelmts;
+ hid_t memb;
+
+ /* get the array's base datatype for each element */
+ memb = H5Tget_super(tid);
+ size = H5Tget_size(memb);
+ ndims = H5Tget_array_ndims(tid);
+ H5Tget_array_dims(tid, dims, NULL);
+ assert(ndims >= 1 && ndims <= H5S_MAX_RANK);
+
+ /* calculate the number of array elements */
+ for (k = 0, nelmts = 1; k < ndims; k++)
+ {
+ temp_nelmts = nelmts;
+ temp_nelmts *= dims[k];
+ nelmts = (size_t)temp_nelmts;
+ }
+
+ /* dump the array element */
+ for (i = 0; i < nelmts; i++)
+ {
+ if (render_bin_output(stream,memb,mem + i * size)<0)
+ return FAIL;
+ }
+
+ H5Tclose(memb);
+ }
+ else if (H5Tget_class(tid) == H5T_VLEN)
+ {
+ unsigned int i;
+ hsize_t nelmts;
+ hid_t memb;
+
+ /* get the VL sequences's base datatype for each element */
+ memb = H5Tget_super(tid);
+ size = H5Tget_size(memb);
+
+ /* Get the number of sequence elements */
+ nelmts = ((hvl_t *)mem)->len;
+
+ for (i = 0; i < nelmts; i++)
+ {
+ /* dump the array element */
+ if (render_bin_output(stream,memb,((char *)(((hvl_t *)mem)->p)) + i * size)<0)
+ return FAIL;
+ }
+ H5Tclose(memb);
+ }
+ else
+ {
+ /* all other types get printed as hexadecimal */
+ size_t i;
+ if (1==size)
+ {
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "0x%02x", mem[0]);
+#else
+ if (1 != fwrite(&mem[0], size, 1, stream))
+ return FAIL;
+#endif
+ }
+ else
+ {
+ for (i = 0; i < size; i++)
+ {
+#if DEBUG_H5DUMP_BIN
+ fprintf(stream, "%s%02x", i?":":"", mem[i]);
+#else
+ if (1 != fwrite(&mem[i], sizeof(char), 1, stream))
+ return FAIL;
+#endif
+ } /*i*/
+ }/*else 1 */
+ }
+
+
+ return SUCCEED;
+}
+
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index 4bbc2d6..861c474 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -352,7 +352,9 @@ struct subset_t {
hsize_t *block;
};
-extern FILE *rawdatastream; /*output stream for raw data */
+extern FILE *rawdatastream; /* output stream for raw data */
+extern int bin_output; /* binary output */
+
/* Strings for output */
#define GROUP "GROUP"