diff options
author | Allen Byrne <byrn@hdfgroup.org> | 2019-09-23 20:30:07 (GMT) |
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committer | Allen Byrne <byrn@hdfgroup.org> | 2019-09-23 20:30:07 (GMT) |
commit | a4d6a270783d69c663357c31fcd6196b98706dfb (patch) | |
tree | ce4cd3ff16aa0a3918c4e999d3b6ba63a35a41fe /tools/misc | |
parent | a0947d808fb3b0af98032beb1a4f5353443c8aa3 (diff) | |
download | hdf5-a4d6a270783d69c663357c31fcd6196b98706dfb.zip hdf5-a4d6a270783d69c663357c31fcd6196b98706dfb.tar.gz hdf5-a4d6a270783d69c663357c31fcd6196b98706dfb.tar.bz2 |
HDFFV-10903 merge S3 from dev
Diffstat (limited to 'tools/misc')
-rw-r--r-- | tools/misc/h5debug.c | 173 | ||||
-rw-r--r-- | tools/misc/h5mkgrp.c | 6 | ||||
-rw-r--r-- | tools/misc/h5repart.c | 585 |
3 files changed, 400 insertions, 364 deletions
diff --git a/tools/misc/h5debug.c b/tools/misc/h5debug.c index 245b5a1..676e050 100644 --- a/tools/misc/h5debug.c +++ b/tools/misc/h5debug.c @@ -51,7 +51,7 @@ #define INDENT 3 #define VCOL 50 - + /*------------------------------------------------------------------------- * Function: get_H5B2_class * @@ -74,45 +74,45 @@ get_H5B2_class(const uint8_t *sig) const H5B2_class_t *cls; switch(subtype) { - case H5B2_TEST_ID: - cls = H5B2_TEST; - break; + case H5B2_TEST_ID: + cls = H5B2_TEST; + break; - case H5B2_FHEAP_HUGE_INDIR_ID: - cls = H5HF_HUGE_BT2_INDIR; - break; + case H5B2_FHEAP_HUGE_INDIR_ID: + cls = H5HF_HUGE_BT2_INDIR; + break; - case H5B2_FHEAP_HUGE_FILT_INDIR_ID: - cls = H5HF_HUGE_BT2_FILT_INDIR; - break; + case H5B2_FHEAP_HUGE_FILT_INDIR_ID: + cls = H5HF_HUGE_BT2_FILT_INDIR; + break; - case H5B2_FHEAP_HUGE_DIR_ID: - cls = H5HF_HUGE_BT2_DIR; - break; + case H5B2_FHEAP_HUGE_DIR_ID: + cls = H5HF_HUGE_BT2_DIR; + break; - case H5B2_FHEAP_HUGE_FILT_DIR_ID: - cls = H5HF_HUGE_BT2_FILT_DIR; - break; + case H5B2_FHEAP_HUGE_FILT_DIR_ID: + cls = H5HF_HUGE_BT2_FILT_DIR; + break; - case H5B2_GRP_DENSE_NAME_ID: - cls = H5G_BT2_NAME; - break; + case H5B2_GRP_DENSE_NAME_ID: + cls = H5G_BT2_NAME; + break; - case H5B2_GRP_DENSE_CORDER_ID: - cls = H5G_BT2_CORDER; - break; + case H5B2_GRP_DENSE_CORDER_ID: + cls = H5G_BT2_CORDER; + break; - case H5B2_SOHM_INDEX_ID: - cls = H5SM_INDEX; - break; + case H5B2_SOHM_INDEX_ID: + cls = H5SM_INDEX; + break; - case H5B2_ATTR_DENSE_NAME_ID: - cls = H5A_BT2_NAME; - break; + case H5B2_ATTR_DENSE_NAME_ID: + cls = H5A_BT2_NAME; + break; - case H5B2_ATTR_DENSE_CORDER_ID: - cls = H5A_BT2_CORDER; - break; + case H5B2_ATTR_DENSE_CORDER_ID: + cls = H5A_BT2_CORDER; + break; default: HDfprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype)); @@ -122,7 +122,7 @@ get_H5B2_class(const uint8_t *sig) return(cls); } /* end get_H5B2_class() */ - + /*------------------------------------------------------------------------- * Function: main * @@ -147,12 +147,12 @@ main(int argc, char *argv[]) uint8_t sig[H5F_SIGNATURE_LEN]; size_t u; H5E_auto2_t func; - void *edata; + void *edata; herr_t status = SUCCEED; if(argc == 1) { - HDfprintf(stderr, "Usage: %s filename [signature-addr [extra]]\n", argv[0]); - HDexit(1); + HDfprintf(stderr, "Usage: %s filename [signature-addr [extra]]\n", argv[0]); + HDexit(1); } /* end if */ /* Initialize the library */ @@ -224,13 +224,15 @@ main(int argc, char *argv[]) */ status = H5HL_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); - } else if(!HDmemcmp (sig, H5HG_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { - /* - * Debug a global heap collection. - */ - status = H5HG_debug (f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); + } + else if(!HDmemcmp (sig, H5HG_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + /* + * Debug a global heap collection. + */ + status = H5HG_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); - } else if(!HDmemcmp(sig, H5G_NODE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5G_NODE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a symbol table node. */ @@ -244,7 +246,8 @@ main(int argc, char *argv[]) status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra); - } else if(!HDmemcmp(sig, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a B-tree. B-trees are debugged through the B-tree * subclass. The subclass identifier is the byte immediately @@ -254,27 +257,29 @@ main(int argc, char *argv[]) unsigned ndims; switch(subtype) { - case H5B_SNODE_ID: - /* Check for extra parameters */ - if(extra == 0) { - HDfprintf(stderr, "\nWarning: Providing the group's local heap address will give more information\n"); - HDfprintf(stderr, "B-tree symbol table node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <address of local heap>\n\n"); - } /* end if */ - - status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra); - break; + case H5B_SNODE_ID: + /* Check for extra parameters */ + if(extra == 0) { + HDfprintf(stderr, "\nWarning: Providing the group's local heap address will give more information\n"); + HDfprintf(stderr, "B-tree symbol table node usage:\n"); + HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <address of local heap>\n\n"); + HDexit(4); + } /* end if */ - case H5B_CHUNK_ID: - /* Check for extra parameters */ - if(extra == 0) { - HDfprintf(stderr, "ERROR: Need number of dimensions of chunk in order to dump chunk B-tree node\n"); - HDfprintf(stderr, "B-tree chunked storage node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions>\n"); - HDexit(4); - } /* end if */ + status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra); + break; + + case H5B_CHUNK_ID: + /* Check for extra parameters */ + if(extra == 0) { + HDfprintf(stderr, "ERROR: Need number of dimensions of chunk in order to dump chunk B-tree node\n"); + HDfprintf(stderr, "B-tree chunked storage node usage:\n"); + HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions> <slowest chunk dim>...<fastest chunk dim>\n"); + HDexit(4); + } /* end if */ - ndims = (unsigned)extra; + /* Build array of chunk dimensions */ + ndims = (unsigned)extra; status = H5D_btree_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, ndims); break; @@ -283,7 +288,8 @@ main(int argc, char *argv[]) HDexit(4); } - } else if(!HDmemcmp(sig, H5B2_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5B2_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a v2 B-tree header. */ @@ -292,7 +298,8 @@ main(int argc, char *argv[]) status = H5B2_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, (haddr_t)extra); - } else if(!HDmemcmp(sig, H5B2_INT_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5B2_INT_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a v2 B-tree internal node. */ @@ -310,7 +317,8 @@ main(int argc, char *argv[]) status = H5B2_int_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra, (unsigned)extra2, (unsigned)extra3, (haddr_t)extra4); - } else if(!HDmemcmp(sig, H5B2_LEAF_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5B2_LEAF_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a v2 B-tree leaf node. */ @@ -327,13 +335,15 @@ main(int argc, char *argv[]) status = H5B2_leaf_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra, (unsigned)extra2, (haddr_t)extra3); - } else if(!HDmemcmp(sig, H5HF_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5HF_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fractal heap header. */ status = H5HF_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); - } else if(!HDmemcmp(sig, H5HF_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5HF_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fractal heap direct block. */ @@ -348,7 +358,8 @@ main(int argc, char *argv[]) status = H5HF_dblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, (size_t)extra2); - } else if(!HDmemcmp(sig, H5HF_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5HF_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fractal heap indirect block. */ @@ -363,14 +374,16 @@ main(int argc, char *argv[]) status = H5HF_iblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, (unsigned)extra2); - } else if(!HDmemcmp(sig, H5FS_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5FS_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a free space header. */ status = H5FS_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); - } else if(!HDmemcmp(sig, H5FS_SINFO_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5FS_SINFO_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug free space serialized sections. */ @@ -385,14 +398,16 @@ main(int argc, char *argv[]) status = H5FS_sects_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, extra2); - } else if(!HDmemcmp(sig, H5SM_TABLE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5SM_TABLE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug shared message master table. */ status = H5SM_table_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, (unsigned) UFAIL, (unsigned) UFAIL); - } else if(!HDmemcmp(sig, H5SM_LIST_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5SM_LIST_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug shared message list index. */ @@ -407,33 +422,37 @@ main(int argc, char *argv[]) status = H5SM_list_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, (unsigned) extra, (size_t) extra2); - } else if(!HDmemcmp(sig, H5O_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if(!HDmemcmp(sig, H5EA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug v2 object header (which have signatures). */ status = H5O_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); - } else if(sig[0] == H5O_VERSION_1) { + } + else if(sig[0] == H5O_VERSION_1) { /* * This could be a v1 object header. Since they don't have a signature * it's a somewhat "ify" detection. */ status = H5O_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); - } else { + } + else { /* * Got some other unrecognized signature. */ - printf("%-*s ", VCOL, "Signature:"); + HDprintf("%-*s ", VCOL, "Signature:"); for (u = 0; u < sizeof(sig); u++) { if (sig[u] > ' ' && sig[u] <= '~' && '\\' != sig[u]) HDputchar(sig[u]); else if ('\\' == sig[u]) { HDputchar('\\'); HDputchar('\\'); - } else - printf("\\%03o", sig[u]); + } + else + HDprintf("\\%03o", sig[u]); } HDputchar('\n'); diff --git a/tools/misc/h5mkgrp.c b/tools/misc/h5mkgrp.c index b7ff73c..feb60d4 100644 --- a/tools/misc/h5mkgrp.c +++ b/tools/misc/h5mkgrp.c @@ -251,7 +251,7 @@ main(int argc, const char *argv[]) /* Display some output if requested */ if(params.verbose) - printf("%s: Creating groups with latest version of the format\n", h5tools_getprogname()); + HDprintf("%s: Creating groups with latest version of the format\n", h5tools_getprogname()); } /* end if */ /* Attempt to open an existing HDF5 file first */ @@ -284,7 +284,7 @@ main(int argc, const char *argv[]) /* Display some output if requested */ if(params.verbose) - printf("%s: Creating parent groups\n", h5tools_getprogname()); + HDprintf("%s: Creating parent groups\n", h5tools_getprogname()); } /* end if */ /* Loop over creating requested groups */ @@ -305,7 +305,7 @@ main(int argc, const char *argv[]) /* Display some output if requested */ if(params.verbose) - printf("%s: created group '%s'\n", h5tools_getprogname(), params.groups[curr_group]); + HDprintf("%s: created group '%s'\n", h5tools_getprogname(), params.groups[curr_group]); } /* end for */ /* Close link creation property list */ diff --git a/tools/misc/h5repart.c b/tools/misc/h5repart.c index dea27d4..461f631 100644 --- a/tools/misc/h5repart.c +++ b/tools/misc/h5repart.c @@ -15,11 +15,11 @@ * Programmer: Robb Matzke <matzke@llnl.gov> * Wednesday, May 13, 1998 * - * Purpose: Repartitions a file family. This program can be used to - * split a single file into a family of files, join a family of - * files into a single file, or copy one family to another while - * changing the size of the family members. It can also be used - * to copy a single file to a single file with holes. + * Purpose: Repartitions a file family. This program can be used to + * split a single file into a family of files, join a family of + * files into a single file, or copy one family to another while + * changing the size of the family members. It can also be used + * to copy a single file to a single file with holes. */ /* See H5private.h for how to include system headers */ @@ -50,13 +50,13 @@ /*------------------------------------------------------------------------- - * Function: usage + * Function: usage * - * Purpose: Prints a usage message. + * Purpose: Prints a usage message. * - * Return: void + * Return: void * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, May 13, 1998 * * Modifications: @@ -67,96 +67,97 @@ static void usage (const char *progname) { HDfprintf(stderr, "usage: %s [-v] [-V] [-[b|m] N[g|m|k]] [-family_to_sec2] SRC DST\n", - progname); + progname); HDfprintf(stderr, " -v Produce verbose output\n"); HDfprintf(stderr, " -V Print a version number and exit\n"); HDfprintf(stderr, " -b N The I/O block size, defaults to 1kB\n"); HDfprintf(stderr, " -m N The destination member size or 1GB\n"); HDfprintf(stderr, " -family_to_sec2 Change file driver from family to sec2\n"); HDfprintf(stderr, " SRC The name of the source file\n"); - HDfprintf(stderr, " DST The name of the destination files\n"); + HDfprintf(stderr, " DST The name of the destination files\n"); HDfprintf(stderr, "Sizes may be suffixed with `g' for GB, `m' for MB or " - "`k' for kB.\n"); + "`k' for kB.\n"); HDfprintf(stderr, "File family names include an integer printf " - "format such as `%%d'\n"); - exit (EXIT_FAILURE); + "format such as `%%d'\n"); + HDexit (EXIT_FAILURE); } - + /*------------------------------------------------------------------------- - * Function: get_size + * Function: get_size * - * Purpose: Reads a size option of the form `-XNS' where `X' is any - * letter, `N' is a multi-character positive decimal number, and - * `S' is an optional suffix letter in the set [GgMmk]. The - * option may also be split among two arguments as: `-X NS'. - * The input value of ARGNO is the argument number for the - * switch in the ARGV vector and ARGC is the number of entries - * in that vector. + * Purpose: Reads a size option of the form `-XNS' where `X' is any + * letter, `N' is a multi-character positive decimal number, and + * `S' is an optional suffix letter in the set [GgMmk]. The + * option may also be split among two arguments as: `-X NS'. + * The input value of ARGNO is the argument number for the + * switch in the ARGV vector and ARGC is the number of entries + * in that vector. * - * Return: Success: The value N multiplied according to the - * suffix S. On return ARGNO will be the number - * of the next argument to process. + * Return: Success: The value N multiplied according to the + * suffix S. On return ARGNO will be the number + * of the next argument to process. * - * Failure: Calls usage() which exits with a non-zero - * status. + * Failure: Calls usage() which exits with a non-zero + * status. * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, May 13, 1998 - * - * Modifications: - * *------------------------------------------------------------------------- */ static off_t get_size (const char *progname, int *argno, int argc, char *argv[]) { - off_t retval=-1; - char *suffix; + off_t retval=-1; + char *suffix; if (isdigit ((int)(argv[*argno][2]))) { - retval = strtol (argv[*argno]+2, &suffix, 10); - (*argno)++; - } else if (argv[*argno][2] || *argno+1>=argc) { - usage (progname); - } else { - retval = strtol (argv[*argno+1], &suffix, 0); - if (suffix==argv[*argno+1]) usage (progname); - *argno += 2; + retval = HDstrtol(argv[*argno]+2, &suffix, 10); + (*argno)++; + } + else if (argv[*argno][2] || *argno+1>=argc) { + usage (progname); + } + else { + retval = HDstrtol(argv[*argno+1], &suffix, 0); + if (suffix == argv[*argno+1]) + usage (progname); + *argno += 2; } if (suffix && suffix[0] && !suffix[1]) { - switch (*suffix) { - case 'G': - case 'g': - retval *= 1024 * 1024 * 1024; - break; - case 'M': - case 'm': - retval *= 1024 * 1024; - break; - case 'k': - retval *= 1024; - break; - default: - usage (progname); - } - } else if (suffix && suffix[0]) { - usage (progname); + switch (*suffix) { + case 'G': + case 'g': + retval *= 1024 * 1024 * 1024; + break; + case 'M': + case 'm': + retval *= 1024 * 1024; + break; + case 'k': + retval *= 1024; + break; + default: + usage(progname); + } + } + else if (suffix && suffix[0]) { + usage (progname); } return retval; } - + /*------------------------------------------------------------------------- - * Function: main + * Function: main * - * Purpose: Split an hdf5 file + * Purpose: Split an hdf5 file * - * Return: Success: + * Return: Success: * - * Failure: + * Failure: * - * Programmer: Robb Matzke + * Programmer: Robb Matzke * Wednesday, May 13, 1998 * * Modifications: @@ -166,36 +167,36 @@ get_size (const char *progname, int *argno, int argc, char *argv[]) int main (int argc, char *argv[]) { - const char *prog_name; /*program name */ - size_t blk_size=1024; /*size of each I/O block */ - char *buf=NULL; /*I/O block buffer */ - size_t n, i; /*counters */ - ssize_t nio; /*I/O return value */ - int argno=1; /*program argument number */ - int src, dst=-1; /*source & destination files */ - int need_seek=FALSE; /*destination needs to seek? */ - int need_write; /*data needs to be written? */ - h5_stat_t sb; /*temporary file stat buffer */ - - int verbose=FALSE; /*display file names? */ - - const char *src_gen_name; /*general source name */ - char *src_name=NULL; /*source member name */ - - int src_is_family; /*is source name a family name? */ - int src_membno=0; /*source member number */ - - const char *dst_gen_name; /*general destination name */ - char *dst_name=NULL; /*destination member name */ - int dst_is_family; /*is dst name a family name? */ - int dst_membno=0; /*destination member number */ - - off_t left_overs=0; /*amount of zeros left over */ - off_t src_offset=0; /*offset in source member */ - off_t dst_offset=0; /*offset in destination member */ - off_t src_size; /*source logical member size */ - off_t src_act_size; /*source actual member size */ - off_t dst_size=1 GB; /*destination logical memb size */ + const char *prog_name; /*program name */ + size_t blk_size=1024; /*size of each I/O block */ + char *buf=NULL; /*I/O block buffer */ + size_t n, i; /*counters */ + ssize_t nio; /*I/O return value */ + int argno=1; /*program argument number */ + int src, dst=-1; /*source & destination files */ + int need_seek=FALSE; /*destination needs to seek? */ + int need_write; /*data needs to be written? */ + h5_stat_t sb; /*temporary file stat buffer */ + + int verbose=FALSE; /*display file names? */ + + const char *src_gen_name; /*general source name */ + char *src_name=NULL; /*source member name */ + + int src_is_family; /*is source name a family name? */ + int src_membno=0; /*source member number */ + + const char *dst_gen_name; /*general destination name */ + char *dst_name=NULL; /*destination member name */ + int dst_is_family; /*is dst name a family name? */ + int dst_membno=0; /*destination member number */ + + off_t left_overs=0; /*amount of zeros left over */ + off_t src_offset=0; /*offset in source member */ + off_t dst_offset=0; /*offset in destination member */ + off_t src_size; /*source logical member size */ + off_t src_act_size; /*source actual member size */ + off_t dst_size=1 GB; /*destination logical memb size */ hid_t fapl; /*file access property list */ hid_t file; hsize_t hdsize; /*destination logical memb size */ @@ -204,203 +205,218 @@ main (int argc, char *argv[]) /* * Get the program name from argv[0]. Use only the last component. */ - if ((prog_name=strrchr (argv[0], '/'))) prog_name++; - else prog_name = argv[0]; + if ((prog_name = HDstrrchr (argv[0], '/'))) + prog_name++; + else + prog_name = argv[0]; /* * Parse switches. */ - while (argno<argc && '-'==argv[argno][0]) { - if (!strcmp (argv[argno], "-v")) { + while (argno < argc && '-' == argv[argno][0]) { + if (!HDstrcmp(argv[argno], "-v")) { verbose = TRUE; argno++; - } else if (!strcmp(argv[argno], "-V")) { - printf("This is %s version %u.%u release %u\n", - prog_name, H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE); - exit(EXIT_SUCCESS); - } else if (!strcmp (argv[argno], "-family_to_sec2")) { + } else if (!HDstrcmp(argv[argno], "-V")) { + HDprintf("This is %s version %u.%u release %u\n", prog_name, H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE); + HDexit(EXIT_SUCCESS); + } else if (!HDstrcmp(argv[argno], "-family_to_sec2")) { family_to_sec2 = TRUE; argno++; - } else if ('b'==argv[argno][1]) { - blk_size = (size_t)get_size (prog_name, &argno, argc, argv); - } else if ('m'==argv[argno][1]) { - dst_size = get_size (prog_name, &argno, argc, argv); + } else if ('b' == argv[argno][1]) { + blk_size = (size_t) get_size(prog_name, &argno, argc, argv); + } else if ('m' == argv[argno][1]) { + dst_size = get_size(prog_name, &argno, argc, argv); } else { - usage (prog_name); + usage(prog_name); } /* end if */ } /* end while */ /* allocate names */ if(NULL == (src_name = (char *)HDcalloc((size_t)NAMELEN, sizeof(char)))) - exit(EXIT_FAILURE); + HDexit(EXIT_FAILURE); if(NULL == (dst_name = (char *)HDcalloc((size_t)NAMELEN, sizeof(char)))) - exit(EXIT_FAILURE); + HDexit(EXIT_FAILURE); /* * Get the name for the source file and open the first member. The size * of the first member determines the logical size of all the members. */ - if (argno>=argc) usage (prog_name); + if (argno >= argc) + usage(prog_name); src_gen_name = argv[argno++]; - sprintf (src_name, src_gen_name, src_membno); + HDsprintf(src_name, src_gen_name, src_membno); src_is_family = strcmp (src_name, src_gen_name); if ((src = HDopen(src_name, O_RDONLY, 0)) < 0) { - HDperror (src_name); - HDexit (EXIT_FAILURE); + HDperror(src_name); + HDexit(EXIT_FAILURE); } - if (HDfstat(src, &sb)<0) { - perror ("fstat"); - exit (EXIT_FAILURE); + if (HDfstat(src, &sb) < 0) { + HDperror("fstat"); + HDexit(EXIT_FAILURE); } src_size = src_act_size = sb.st_size; - if (verbose) HDfprintf (stderr, "< %s\n", src_name); + if (verbose) + HDfprintf(stderr, "< %s\n", src_name); /* * Get the name for the destination file and open the first member. */ - if (argno>=argc) usage (prog_name); + if (argno>=argc) + usage (prog_name); dst_gen_name = argv[argno++]; - sprintf (dst_name, dst_gen_name, dst_membno); - dst_is_family = strcmp (dst_name, dst_gen_name); + HDsprintf(dst_name, dst_gen_name, dst_membno); + dst_is_family = HDstrcmp(dst_name, dst_gen_name); - if ((dst = HDopen (dst_name, O_RDWR|O_CREAT|O_TRUNC, 0666)) < 0) { - HDperror (dst_name); - HDexit (EXIT_FAILURE); + if ((dst = HDopen(dst_name, O_RDWR|O_CREAT|O_TRUNC, 0666)) < 0) { + HDperror(dst_name); + HDexit(EXIT_FAILURE); } - if (verbose) HDfprintf (stderr, "> %s\n", dst_name); + if (verbose) + HDfprintf(stderr, "> %s\n", dst_name); /* No more arguments */ - if (argno<argc) usage (prog_name); + if (argno < argc) + usage (prog_name); /* Now the real work, split the file */ buf = (char *)HDmalloc(blk_size); while (src_offset<src_size) { - /* Read a block. The amount to read is the minimum of: - * 1. The I/O block size - * 2. What's left to write in the destination member - * 3. Left over zeros or what's left in the source member. - */ - n = blk_size; - if (dst_is_family) n = (size_t)MIN((off_t)n, dst_size-dst_offset); - if (left_overs) { - n = (size_t)MIN ((off_t)n, left_overs); - left_overs = left_overs - (off_t)n; - need_write = FALSE; - } else if (src_offset<src_act_size) { - n = (size_t)MIN ((off_t)n, src_act_size-src_offset); - if ((nio=HDread (src, buf, n))<0) { - perror ("read"); - exit (EXIT_FAILURE); - } else if ((size_t)nio!=n) { - HDfprintf (stderr, "%s: short read\n", src_name); - exit (EXIT_FAILURE); - } - for (i=0; i<n; i++) { - if (buf[i]) break; - } - need_write = (i<n); - } else { - n = 0; - left_overs = src_size - src_act_size; - need_write = FALSE; - } - - /* - * If the block contains non-zero data then write it to the - * destination, otherwise just remember that we'll have to do a seek - * later in the destination when we finally get non-zero data. - */ - if (need_write) { - if (need_seek && HDlseek (dst, dst_offset, SEEK_SET)<0) { - perror ("HDlseek"); - exit (EXIT_FAILURE); - } - if ((nio=HDwrite (dst, buf, n))<0) { - perror ("write"); - exit (EXIT_FAILURE); - } else if ((size_t)nio!=n) { - HDfprintf (stderr, "%s: short write\n", dst_name); - exit (EXIT_FAILURE); - } - need_seek = FALSE; - } else { - need_seek = TRUE; - } - - /* - * Update the source offset and open the next source family member if - * necessary. The source stream ends at the first member which - * cannot be opened because it doesn't exist. At the end of the - * source stream, update the destination offset and break out of the - * loop. The destination offset must be updated so we can fix - * trailing holes. - */ - src_offset = src_offset + (off_t)n; - if (src_offset==src_act_size) { - HDclose (src); - if (!src_is_family) { - dst_offset = dst_offset + (off_t)n; - break; - } - sprintf (src_name, src_gen_name, ++src_membno); - if ((src = HDopen (src_name, O_RDONLY, 0)) < 0 && ENOENT == errno) { - dst_offset = dst_offset + (off_t)n; - break; - } else if (src<0) { - perror (src_name); - exit (EXIT_FAILURE); - } - if (HDfstat (src, &sb)<0) { - perror ("fstat"); - exit (EXIT_FAILURE); - } - src_act_size = sb.st_size; - if (src_act_size>src_size) { - HDfprintf (stderr, "%s: member truncated to %lu bytes\n", - src_name, (unsigned long)src_size); - } - src_offset = 0; - if (verbose) HDfprintf (stderr, "< %s\n", src_name); - } - - /* - * Update the destination offset, opening a new member if one will be - * needed. The first member is extended to the logical member size - * but other members might be smaller if they end with a hole. - */ - dst_offset = dst_offset + (off_t)n; - if (dst_is_family && dst_offset==dst_size) { - if (0==dst_membno) { - if (HDlseek (dst, dst_size-1, SEEK_SET)<0) { - perror ("HDHDlseek"); - exit (EXIT_FAILURE); - } - if (HDread (dst, buf, 1)<0) { - perror ("read"); - exit (EXIT_FAILURE); - } - if (HDlseek (dst, dst_size-1, SEEK_SET)<0) { - perror ("HDlseek"); - exit (EXIT_FAILURE); - } - if (HDwrite (dst, buf, 1)<0) { - perror ("write"); - exit (EXIT_FAILURE); - } - } - HDclose (dst); - sprintf (dst_name, dst_gen_name, ++dst_membno); - if ((dst = HDopen (dst_name, O_RDWR|O_CREAT|O_TRUNC, 0666)) < 0) { - HDperror (dst_name); - HDexit (EXIT_FAILURE); - } - dst_offset = 0; - need_seek = FALSE; - if (verbose) HDfprintf (stderr, "> %s\n", dst_name); - } + /* Read a block. The amount to read is the minimum of: + * 1. The I/O block size + * 2. What's left to write in the destination member + * 3. Left over zeros or what's left in the source member. + */ + n = blk_size; + if (dst_is_family) + n = (size_t)MIN((off_t)n, dst_size-dst_offset); + if (left_overs) { + n = (size_t)MIN((off_t)n, left_overs); + left_overs = left_overs - (off_t) n; + need_write = FALSE; + } + else if (src_offset < src_act_size) { + n = (size_t)MIN((off_t)n, src_act_size-src_offset); + if ((nio = HDread(src, buf, n)) < 0) { + HDperror("read"); + HDexit(EXIT_FAILURE); + } + else if ((size_t) nio != n) { + HDfprintf(stderr, "%s: short read\n", src_name); + HDexit(EXIT_FAILURE); + } + for (i = 0; i < n; i++) { + if (buf[i]) + break; + } + need_write = (i < n); + } + else { + n = 0; + left_overs = src_size - src_act_size; + need_write = FALSE; + } + + /* + * If the block contains non-zero data then write it to the + * destination, otherwise just remember that we'll have to do a seek + * later in the destination when we finally get non-zero data. + */ + if (need_write) { + if (need_seek && HDlseek (dst, dst_offset, SEEK_SET) < 0) { + HDperror("HDlseek"); + HDexit(EXIT_FAILURE); + } + if ((nio = HDwrite(dst, buf, n)) < 0) { + HDperror("write"); + HDexit(EXIT_FAILURE); + } + else if ((size_t) nio != n) { + HDfprintf(stderr, "%s: short write\n", dst_name); + HDexit(EXIT_FAILURE); + } + need_seek = FALSE; + } + else { + need_seek = TRUE; + } + + /* + * Update the source offset and open the next source family member if + * necessary. The source stream ends at the first member which + * cannot be opened because it doesn't exist. At the end of the + * source stream, update the destination offset and break out of the + * loop. The destination offset must be updated so we can fix + * trailing holes. + */ + src_offset = src_offset + (off_t) n; + if (src_offset == src_act_size) { + HDclose(src); + if (!src_is_family) { + dst_offset = dst_offset + (off_t) n; + break; + } + HDsprintf(src_name, src_gen_name, ++src_membno); + if ((src = HDopen(src_name, O_RDONLY)) < 0 && ENOENT == errno) { + dst_offset = dst_offset + (off_t) n; + break; + } + else if (src < 0) { + HDperror(src_name); + HDexit(EXIT_FAILURE); + } + if (HDfstat (src, &sb) < 0) { + HDperror("fstat"); + HDexit(EXIT_FAILURE); + } + src_act_size = sb.st_size; + if (src_act_size > src_size) { + HDfprintf(stderr, "%s: member truncated to %lu bytes\n", src_name, (unsigned long) src_size); + } + src_offset = 0; + if (verbose) + HDfprintf(stderr, "< %s\n", src_name); + } + + /* + * Update the destination offset, opening a new member if one will be + * needed. The first member is extended to the logical member size + * but other members might be smaller if they end with a hole. + */ + dst_offset = dst_offset + (off_t) n; + if (dst_is_family && dst_offset == dst_size) { + if (0 == dst_membno) { + if (HDlseek (dst, dst_size-1, SEEK_SET) < 0) { + HDperror("HDHDlseek"); + HDexit(EXIT_FAILURE); + } + if (HDread (dst, buf, 1) < 0) { + HDperror("read"); + HDexit(EXIT_FAILURE); + } + if (HDlseek (dst, dst_size-1, SEEK_SET) < 0) { + HDperror("HDlseek"); + HDexit(EXIT_FAILURE); + } + if (HDwrite (dst, buf, 1) < 0) { + HDperror("write"); + HDexit(EXIT_FAILURE); + } + } + HDclose(dst); + HDsprintf(dst_name, dst_gen_name, ++dst_membno); + if ((dst = HDopen(dst_name, O_RDWR | O_CREAT | O_TRUNC, 0666)) < 0) { + HDperror(dst_name); + HDexit(EXIT_FAILURE); + } + dst_offset = 0; + need_seek = FALSE; + if (verbose) + HDfprintf(stderr, "> %s\n", dst_name); + } } /* @@ -409,30 +425,30 @@ main (int argc, char *argv[]) * family has been truncated. */ if (need_seek) { - if (HDlseek (dst, dst_offset-1, SEEK_SET)<0) { - perror ("HDlseek"); - exit (EXIT_FAILURE); - } - if (HDread (dst, buf, 1)<0) { - perror ("read"); - exit (EXIT_FAILURE); - } - if (HDlseek (dst, dst_offset-1, SEEK_SET)<0) { - perror ("HDlseek"); - exit (EXIT_FAILURE); - } - if (HDwrite (dst, buf, 1)<0) { - perror ("write"); - exit (EXIT_FAILURE); - } + if (HDlseek (dst, dst_offset-1, SEEK_SET)<0) { + HDperror ("HDlseek"); + HDexit (EXIT_FAILURE); + } + if (HDread (dst, buf, 1)<0) { + HDperror ("read"); + HDexit (EXIT_FAILURE); + } + if (HDlseek (dst, dst_offset-1, SEEK_SET)<0) { + HDperror ("HDlseek"); + HDexit (EXIT_FAILURE); + } + if (HDwrite (dst, buf, 1)<0) { + HDperror ("write"); + HDexit (EXIT_FAILURE); + } } HDclose (dst); /* Modify family driver information saved in superblock through private property. * These private properties are for this tool only. */ - if ((fapl=H5Pcreate(H5P_FILE_ACCESS))<0) { - perror ("H5Pcreate"); - exit (EXIT_FAILURE); + if ((fapl=H5Pcreate(H5P_FILE_ACCESS)) < 0) { + HDperror ("H5Pcreate"); + HDexit (EXIT_FAILURE); } if(family_to_sec2) { @@ -440,23 +456,24 @@ main (int argc, char *argv[]) * with sec2 driver. This property signals the library to ignore the family * driver information saved in the superblock. */ if(H5Pset(fapl, H5F_ACS_FAMILY_TO_SEC2_NAME, &family_to_sec2) < 0) { - perror ("H5Pset"); - exit (EXIT_FAILURE); + HDperror ("H5Pset"); + HDexit (EXIT_FAILURE); } - } else { + } + else { /* Modify family size saved in superblock through private property. It signals * library to save the new member size(specified in command line) in superblock. * This private property is for this tool only. */ if(H5Pset_fapl_family(fapl, H5F_FAMILY_DEFAULT, H5P_DEFAULT) < 0) { - perror ("H5Pset_fapl_family"); - exit (EXIT_FAILURE); + HDperror ("H5Pset_fapl_family"); + HDexit (EXIT_FAILURE); } /* Set the property of the new member size as hsize_t */ hdsize = (hsize_t)dst_size; if(H5Pset(fapl, H5F_ACS_FAMILY_NEWSIZE_NAME, &hdsize) < 0) { - perror ("H5Pset"); - exit (EXIT_FAILURE); + HDperror ("H5Pset"); + HDexit (EXIT_FAILURE); } } @@ -468,19 +485,19 @@ main (int argc, char *argv[]) * new file can only be a sec2 file, reopen the new file should fail. There's * nothing to do in this case. */ H5E_BEGIN_TRY { - file=H5Fopen(dst_gen_name, H5F_ACC_RDWR, fapl); + file = H5Fopen(dst_gen_name, H5F_ACC_RDWR, fapl); } H5E_END_TRY; - if(file>=0) { - if(H5Fclose(file)<0) { - perror ("H5Fclose"); - exit (EXIT_FAILURE); + if(file >= 0) { + if(H5Fclose(file) < 0) { + HDperror("H5Fclose"); + HDexit(EXIT_FAILURE); } /* end if */ } /* end if */ - if(H5Pclose(fapl)<0) { - perror ("H5Pclose"); - exit (EXIT_FAILURE); + if(H5Pclose(fapl) < 0) { + HDperror("H5Pclose"); + HDexit(EXIT_FAILURE); } /* end if */ /* Free resources and return */ |