diff options
author | Larry Knox <lrknox@hdfgroup.org> | 2020-10-16 22:47:27 (GMT) |
---|---|---|
committer | Larry Knox <lrknox@hdfgroup.org> | 2020-10-16 22:47:27 (GMT) |
commit | db30c2da68ece4a155e9e50c28ec16d6057509b2 (patch) | |
tree | 1d36f673c36dfee71c266bba39511da21ecc782e /tools/src/h5dump | |
parent | 5b9cf732caab9daa6ed1e00f2df4f5a792340196 (diff) | |
parent | 2e2b87d1cbdee3b919e6e5cba6c5ecd1b9434434 (diff) | |
download | hdf5-db30c2da68ece4a155e9e50c28ec16d6057509b2.zip hdf5-db30c2da68ece4a155e9e50c28ec16d6057509b2.tar.gz hdf5-db30c2da68ece4a155e9e50c28ec16d6057509b2.tar.bz2 |
Merge HDF5 1.10.7 release files into 1.10/masterhdf5-1_10_7
Diffstat (limited to 'tools/src/h5dump')
-rw-r--r-- | tools/src/h5dump/CMakeLists.txt | 6 | ||||
-rw-r--r-- | tools/src/h5dump/Makefile.in | 62 | ||||
-rw-r--r-- | tools/src/h5dump/h5dump.c | 378 | ||||
-rw-r--r-- | tools/src/h5dump/h5dump.h | 40 | ||||
-rw-r--r-- | tools/src/h5dump/h5dump_ddl.c | 277 | ||||
-rw-r--r-- | tools/src/h5dump/h5dump_extern.h | 43 | ||||
-rw-r--r-- | tools/src/h5dump/h5dump_xml.c | 129 |
7 files changed, 356 insertions, 579 deletions
diff --git a/tools/src/h5dump/CMakeLists.txt b/tools/src/h5dump/CMakeLists.txt index 383b04e..cae7212 100644 --- a/tools/src/h5dump/CMakeLists.txt +++ b/tools/src/h5dump/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.10) +cmake_minimum_required (VERSION 3.12) project (HDF5_TOOLS_SRC_H5DUMP C) # -------------------------------------------------------------------- @@ -11,6 +11,8 @@ if (NOT ONLY_SHARED_LIBS) ${HDF5_TOOLS_SRC_H5DUMP_SOURCE_DIR}/h5dump_xml.c ) target_include_directories (h5dump PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") + target_compile_options(h5dump PRIVATE "${HDF5_CMAKE_C_FLAGS}") + #target_compile_definitions(h5dump PRIVATE H5_TOOLS_DEBUG) TARGET_C_PROPERTIES (h5dump STATIC) target_link_libraries (h5dump PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_target_properties (h5dump PROPERTIES FOLDER tools) @@ -26,6 +28,8 @@ if (BUILD_SHARED_LIBS) ${HDF5_TOOLS_SRC_H5DUMP_SOURCE_DIR}/h5dump_xml.c ) target_include_directories (h5dump-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") + target_compile_options(h5dump-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}") + #target_compile_definitions(h5dump-shared PRIVATE H5_TOOLS_DEBUG) TARGET_C_PROPERTIES (h5dump-shared SHARED) target_link_libraries (h5dump-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_target_properties (h5dump-shared PROPERTIES FOLDER tools) diff --git a/tools/src/h5dump/Makefile.in b/tools/src/h5dump/Makefile.in index 3bca706..afb9a89 100644 --- a/tools/src/h5dump/Makefile.in +++ b/tools/src/h5dump/Makefile.in @@ -417,15 +417,15 @@ AMTAR = @AMTAR@ # H5_CFLAGS holds flags that should be used when building hdf5, # but which should not be exported to h5cc for building other programs. -# AM_CFLAGS is an automake construct which should be used by Makefiles +# AM_CFLAGS is an automake construct which should be used by Makefiles # instead of CFLAGS, as CFLAGS is reserved solely for the user to define. # This applies to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS as well. -AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@ +AM_CFLAGS = @AM_CFLAGS@ @H5_CFLAGS@ @H5_ECFLAGS@ # Include files in /src directory and /tools/lib directory AM_CPPFLAGS = @AM_CPPFLAGS@ @H5_CPPFLAGS@ -I$(top_srcdir)/src \ -I$(top_srcdir)/tools/lib -AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@ +AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@ @H5_ECXXFLAGS@ AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@ AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@ AM_JAVACFLAGS = @AM_JAVACFLAGS@ @@ -445,6 +445,7 @@ CC = @CC@ CCDEPMODE = @CCDEPMODE@ CC_VERSION = @CC_VERSION@ CFLAGS = @CFLAGS@ +CLANG_SANITIZE_CHECKS = @CLANG_SANITIZE_CHECKS@ CODESTACK = @CODESTACK@ CONFIG_DATE = @CONFIG_DATE@ CONFIG_MODE = @CONFIG_MODE@ @@ -461,6 +462,7 @@ DEFAULT_API_VERSION = @DEFAULT_API_VERSION@ DEFS = @DEFS@ DEPDIR = @DEPDIR@ DEPRECATED_SYMBOLS = @DEPRECATED_SYMBOLS@ +DESIRED_FILE_LOCKING = @DESIRED_FILE_LOCKING@ DEV_WARNINGS = @DEV_WARNINGS@ DIRECT_VFD = @DIRECT_VFD@ DLLTOOL = @DLLTOOL@ @@ -497,8 +499,11 @@ H5_CFLAGS = @H5_CFLAGS@ H5_CLASSPATH = @H5_CLASSPATH@ H5_CPPFLAGS = @H5_CPPFLAGS@ H5_CXXFLAGS = @H5_CXXFLAGS@ +H5_ECFLAGS = @H5_ECFLAGS@ +H5_ECXXFLAGS = @H5_ECXXFLAGS@ H5_FCFLAGS = @H5_FCFLAGS@ H5_FORTRAN_SHARED = @H5_FORTRAN_SHARED@ +H5_IS_DARWIN = @H5_IS_DARWIN@ H5_JAVACFLAGS = @H5_JAVACFLAGS@ H5_JAVAFLAGS = @H5_JAVAFLAGS@ H5_JNIFLAGS = @H5_JNIFLAGS@ @@ -521,6 +526,7 @@ HL = @HL@ HL_FOR = @HL_FOR@ HSIZE_T = @HSIZE_T@ HSSIZE_T = @HSSIZE_T@ +IGNORE_DISABLED_FILE_LOCKS = @IGNORE_DISABLED_FILE_LOCKS@ INSTALL = @INSTALL@ INSTALL_DATA = @INSTALL_DATA@ INSTALL_PROGRAM = @INSTALL_PROGRAM@ @@ -557,6 +563,7 @@ MAINT = @MAINT@ MAKEINFO = @MAKEINFO@ MANIFEST_TOOL = @MANIFEST_TOOL@ MEMORYALLOCSANITYCHECK = @MEMORYALLOCSANITYCHECK@ +MIRROR_VFD = @MIRROR_VFD@ MKDIR_P = @MKDIR_P@ MPE = @MPE@ NM = @NM@ @@ -616,6 +623,7 @@ TIME = @TIME@ TR = @TR@ TRACE_API = @TRACE_API@ UNAME_INFO = @UNAME_INFO@ +USE_FILE_LOCKING = @USE_FILE_LOCKING@ USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@ USE_FILTER_SZIP = @USE_FILTER_SZIP@ USINGMEMCHECKER = @USINGMEMCHECKER@ @@ -651,6 +659,7 @@ docdir = $(exec_prefix)/doc dvidir = @dvidir@ enable_shared = @enable_shared@ enable_static = @enable_static@ +examplesdir = @examplesdir@ exec_prefix = @exec_prefix@ fortran_linux_linker_option = @fortran_linux_linker_option@ host = @host@ @@ -707,15 +716,15 @@ LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la -# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below -# has been removed. According to the official description of DESTDIR by Gnu at -# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is -# prepended to the normal and complete install path that it precedes for the -# purpose of installing in a temporary directory which is useful for building -# rpms and other packages. The '/' after ${DESTDIR} will be followed by another -# '/' at the beginning of the normal install path. When DESTDIR is empty the -# path then begins with '//', which is incorrect and causes problems at least for -# Cygwin. +# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below +# has been removed. According to the official description of DESTDIR by Gnu at +# http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is +# prepended to the normal and complete install path that it precedes for the +# purpose of installing in a temporary directory which is useful for building +# rpms and other packages. The '/' after ${DESTDIR} will be followed by another +# '/' at the beginning of the normal install path. When DESTDIR is empty the +# path then begins with '//', which is incorrect and causes problems at least for +# Cygwin. # Scripts used to build examples # If only shared libraries have been installed, have h5cc build examples with @@ -756,7 +765,7 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) -chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = @@ -1355,28 +1364,37 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: echo "============================" > $${log}; \ fi; \ if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \ if test -n "$(REALTIMEOUTPUT)"; then \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + echo "Fortran API: Test log for $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ else \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + echo "Fortran API: Test log for $${tname} $(TEST_FLAGS)" >> $${log}; \ fi; \ elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \ if test -n "$(REALTIMEOUTPUT)"; then \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + echo "C++ API: Test log for $${tname} $(TEST_FLAGS)" | tee -a $${log};\ else \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + echo "C++ API: Test log for $${tname} $(TEST_FLAGS)" >> $${log};\ fi; \ else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + echo "Testing: $${tname} $(TEST_FLAGS)"; \ if test -n "$(REALTIMEOUTPUT)"; then \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + echo "Test log for $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ else \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + echo "Test log for $${tname} $(TEST_FLAGS)" >> $${log}; \ fi; \ fi; \ if test -n "$(REALTIMEOUTPUT)"; then \ + if test -n "$(HDF5_DRIVER)"; then \ + echo "Virtual file driver (VFD): $(HDF5_DRIVER)" | tee -a $${log}; \ + fi; \ + else \ + if test -n "$(HDF5_DRIVER)"; then \ + echo "Virtual file driver (VFD): $(HDF5_DRIVER)" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ echo "============================" | tee -a $${log}; \ else \ echo "============================" >> $${log}; \ diff --git a/tools/src/h5dump/h5dump.c b/tools/src/h5dump/h5dump.c index 19ed013..f30d8fd 100644 --- a/tools/src/h5dump/h5dump.c +++ b/tools/src/h5dump/h5dump.c @@ -18,30 +18,32 @@ /* Name of tool */ #define PROGRAMNAME "h5dump" -static const char *driver = NULL; /* The driver to open the file with. */ -const char *outfname=NULL; -static int doxml = 0; -static int useschema = 1; -static const char *xml_dtd_uri = NULL; +static const char *driver_name_g = NULL; /* The driver to open the file with. */ +const char *outfname_g = NULL; +static hbool_t doxml_g = FALSE; +static hbool_t useschema_g = TRUE; +static const char *xml_dtd_uri_g = NULL; #ifdef H5_HAVE_ROS3_VFD -static H5FD_ros3_fapl_t ros3_fa = { - 1, /* version */ - false, /* authenticate */ - "", /* aws region */ - "", /* access key id */ - "", /* secret access key */ +/* Default "anonymous" S3 configuration */ +static H5FD_ros3_fapl_t ros3_fa_g = { + 1, /* Structure Version */ + false, /* Authenticate? */ + "", /* AWS Region */ + "", /* Access Key ID */ + "", /* Secret Access Key */ }; #endif /* H5_HAVE_ROS3_VFD */ #ifdef H5_HAVE_LIBHDFS -static H5FD_hdfs_fapl_t hdfs_fa = { - 1, /* fapl version */ - "localhost", /* namenode name */ - 0, /* namenode port */ - "", /* kerberos ticket cache */ - "", /* user name */ - 2048, /* stream buffer size */ +/* "Default" HDFS configuration */ +static H5FD_hdfs_fapl_t hdfs_fa_g = { + 1, /* Structure Version */ + "localhost", /* Namenode Name */ + 0, /* Namenode Port */ + "", /* Kerberos ticket cache */ + "", /* User name */ + 2048, /* Stream buffer size */ }; #endif /* H5_HAVE_LIBHDFS */ @@ -634,20 +636,19 @@ parse_hsize_list(const char *h_list, subset_d *d) /*------------------------------------------------------------------------- * Function: parse_subset_params * - * Purpose: Parse the so-called "terse" syntax for specifying subsetting - * parameters. + * Purpose: Parse the so-called "terse" syntax for specifying subsetting parameters. * * Return: Success: struct subset_t object * Failure: NULL *------------------------------------------------------------------------- */ static struct subset_t * -parse_subset_params(char *dset) +parse_subset_params(const char *dset) { struct subset_t *s = NULL; char *brace; - if (!disable_compact_subset && ((brace = HDstrrchr(dset, '[')) != NULL)) { + if (!dump_opts.disable_compact_subset && ((brace = HDstrrchr(dset, '[')) != NULL)) { *brace++ = '\0'; s = (struct subset_t *)HDcalloc(1, sizeof(struct subset_t)); @@ -862,14 +863,14 @@ parse_command_line(int argc, const char *argv[]) int opt; int last_was_dset = FALSE; - /* no arguments */ + /* no arguments */ if (argc == 1) { usage(h5tools_getprogname()); goto error; } /* this will be plenty big enough to hold the info */ - if((hand = (struct handler_t *)HDcalloc((size_t)argc, sizeof(struct handler_t)))==NULL) { + if((hand = (struct handler_t *)HDcalloc((size_t)argc, sizeof(struct handler_t))) == NULL) { goto error; } @@ -878,50 +879,50 @@ parse_command_line(int argc, const char *argv[]) parse_start: switch ((char)opt) { case 'R': - display_region = TRUE; + dump_opts.display_region = TRUE; region_output = TRUE; break; case 'B': - display_bb = TRUE; + dump_opts.display_bb = TRUE; last_was_dset = FALSE; break; case 'n': - display_fi = TRUE; + dump_opts.display_fi = TRUE; last_was_dset = FALSE; if (opt_arg != NULL) h5trav_set_verbose(HDatoi(opt_arg)); break; case 'p': - display_dcpl = TRUE; + dump_opts.display_dcpl = TRUE; break; case 'y': - display_ai = FALSE; + dump_opts.display_ai = FALSE; break; case 'e': - display_escape = TRUE; + dump_opts.display_escape = TRUE; break; case 'H': - display_data = FALSE; - display_attr_data = FALSE; + dump_opts.display_data = FALSE; + dump_opts.display_attr_data = FALSE; last_was_dset = FALSE; break; case 'A': if (opt_arg != NULL) { if(0 == HDatoi(opt_arg)) - include_attrs = FALSE; + dump_opts.include_attrs = FALSE; } else { - display_data = FALSE; - display_attr_data = TRUE; + dump_opts.display_data = FALSE; + dump_opts.display_attr_data = TRUE; last_was_dset = FALSE; } break; case 'i': - display_oid = TRUE; + dump_opts.display_oid = TRUE; last_was_dset = FALSE; break; case 'r': - display_char = TRUE; + dump_opts.display_char = TRUE; break; case 'V': print_version(h5tools_getprogname()); @@ -942,7 +943,7 @@ parse_start: } break; case 'N': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -954,7 +955,7 @@ parse_start: last_was_dset = FALSE; break; case 'a': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -966,7 +967,7 @@ parse_start: last_was_dset = FALSE; break; case 'd': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -980,10 +981,10 @@ parse_start: last_was_dset = TRUE; break; case 'f': - driver = opt_arg; + driver_name_g = opt_arg; break; case 'g': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -995,7 +996,7 @@ parse_start: last_was_dset = FALSE; break; case 'l': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -1007,7 +1008,7 @@ parse_start: last_was_dset = FALSE; break; case 't': - display_all = 0; + dump_opts.display_all = 0; for (i = 0; i < argc; i++) if (!hand[i].func) { @@ -1034,13 +1035,13 @@ parse_start: } } else { - if(display_attr_data && !display_data) { + if(dump_opts.display_attr_data && !dump_opts.display_data) { if (h5tools_set_attr_output_file(opt_arg, 0) < 0) { usage(h5tools_getprogname()); goto error; } } - if(display_data || display_all) { + if(dump_opts.display_data || dump_opts.display_all) { if (h5tools_set_data_output_file(opt_arg, 0) < 0) { usage(h5tools_getprogname()); goto error; @@ -1048,9 +1049,9 @@ parse_start: } } - usingdasho = TRUE; + dump_opts.usingdasho = TRUE; last_was_dset = FALSE; - outfname = opt_arg; + outfname_g = opt_arg; break; case 'b': @@ -1062,8 +1063,8 @@ parse_start: } } bin_output = TRUE; - if (outfname!=NULL) { - if (h5tools_set_data_output_file(outfname, 1) < 0) { + if (outfname_g != NULL) { + if (h5tools_set_data_output_file(outfname_g, 1) < 0) { /* failed to set output file */ usage(h5tools_getprogname()); goto error; @@ -1098,14 +1099,14 @@ parse_start: usage(h5tools_getprogname()); goto error; } - display_packed_bits = TRUE; + dump_opts.display_packed_bits = TRUE; break; case 'v': - display_vds_first = TRUE; + dump_opts.display_vds_first = TRUE; break; case 'G': - vds_gap_size = HDatoi(opt_arg); - if (vds_gap_size < 0) { + dump_opts.vds_gap_size = HDatoi(opt_arg); + if (dump_opts.vds_gap_size < 0) { usage(h5tools_getprogname()); goto error; } @@ -1114,15 +1115,15 @@ parse_start: /** begin XML parameters **/ case 'x': /* select XML output */ - doxml = TRUE; - useschema = TRUE; + doxml_g = TRUE; + useschema_g = TRUE; h5tools_dump_header_format = NULL; dump_function_table = &xml_function_table; h5tools_nCols = 0; break; case 'u': - doxml = TRUE; - useschema = FALSE; + doxml_g = TRUE; + useschema_g = FALSE; xmlnsprefix = ""; h5tools_dump_header_format = NULL; dump_function_table = &xml_function_table; @@ -1131,7 +1132,7 @@ parse_start: case 'D': /* specify alternative XML DTD or schema */ /* To Do: check format of this value? */ - xml_dtd_uri = opt_arg; + xml_dtd_uri_g = opt_arg; h5tools_nCols = 0; break; @@ -1144,7 +1145,7 @@ parse_start: case 'X': /* specify XML namespace (default="hdf5:"), or none */ /* To Do: check format of this value? */ - if (!useschema) { + if (!useschema_g) { usage(h5tools_getprogname()); goto error; } @@ -1242,7 +1243,7 @@ end_collect: enable_error_stack = 1; break; case 'C': - disable_compact_subset = TRUE; + dump_opts.disable_compact_subset = TRUE; break; case 'h': usage(h5tools_getprogname()); @@ -1252,106 +1253,37 @@ end_collect: goto done; case '$': -#ifndef H5_HAVE_ROS3_VFD +#ifdef H5_HAVE_ROS3_VFD + if (h5tools_parse_ros3_fapl_tuple(opt_arg, ',', &ros3_fa_g) < 0) { + error_msg("failed to parse S3 VFD credential info\n"); + usage(h5tools_getprogname()); + free_handler(hand, argc); + hand = NULL; + h5tools_setstatus(EXIT_FAILURE); + goto done; + } +#else error_msg("Read-Only S3 VFD not enabled.\n"); h5tools_setstatus(EXIT_FAILURE); goto done; -#else - /* s3 credential */ - { - char **s3_cred = NULL; - char *s3_cred_string = NULL; - const char *ccred[3]; - unsigned nelems = 0; - if (FAIL == parse_tuple(opt_arg, ',', &s3_cred_string, &nelems, &s3_cred)) { - error_msg("unable to parse malformed s3 credentials\n"); - usage(h5tools_getprogname()); - free_handler(hand, argc); - hand = NULL; - h5tools_setstatus(EXIT_FAILURE); - goto done; - } - if (nelems != 3) { - error_msg("s3 credentials expects 3 elements\n"); - usage(h5tools_getprogname()); - free_handler(hand, argc); - hand = NULL; - h5tools_setstatus(EXIT_FAILURE); - goto done; - } - ccred[0] = (const char *)s3_cred[0]; - ccred[1] = (const char *)s3_cred[1]; - ccred[2] = (const char *)s3_cred[2]; - if (0 == h5tools_populate_ros3_fapl(&ros3_fa, ccred)) { - error_msg("Invalid S3 credentials\n"); - usage(h5tools_getprogname()); - free_handler(hand, argc); - hand = NULL; - h5tools_setstatus(EXIT_FAILURE); - goto done; - } - HDfree(s3_cred); - HDfree(s3_cred_string); - } /* s3 credential block */ +#endif break; -#endif /* H5_HAVE_ROS3_VFD */ case '#': -#ifndef H5_HAVE_LIBHDFS - error_msg("HDFS VFD is not enabled.\n"); - goto error; -#else - { - /* read hdfs properties tuple and store values in `hdfs_fa` */ - unsigned nelems = 0; - char *props_src = NULL; - char **props = NULL; - unsigned long k = 0; - if (FAIL == parse_tuple((const char *)opt_arg, ',', &props_src, &nelems, &props)) { - error_msg("unable to parse hdfs properties tuple\n"); - goto error; - } - /* sanity-check tuple count - */ - if (nelems != 5) { - h5tools_setstatus(EXIT_FAILURE); - goto error; - } - /* Populate fapl configuration structure with given - * properties. - * WARNING: No error-checking is done on length of input - * strings... Silent overflow is possible, albeit - * unlikely. - */ - if (strncmp(props[0], "", 1)) - HDstrncpy(hdfs_fa.namenode_name, (const char *)props[0], HDstrlen(props[0])); - - if (strncmp(props[1], "", 1)) { - k = strtoul((const char *)props[1], NULL, 0); - if (errno == ERANGE) { - h5tools_setstatus(EXIT_FAILURE); - goto error; - } - hdfs_fa.namenode_port = (int32_t)k; - } - if (strncmp(props[2], "", 1)) - HDstrncpy(hdfs_fa.kerberos_ticket_cache, (const char *)props[2], HDstrlen(props[2])); - - if (strncmp(props[3], "", 1)) - HDstrncpy(hdfs_fa.user_name, (const char *)props[3], HDstrlen(props[3])); - - if (strncmp(props[4], "", 1)) { - k = strtoul((const char *)props[4], NULL, 0); - if (errno == ERANGE) { - h5tools_setstatus(EXIT_FAILURE); - goto error; - } - hdfs_fa.stream_buffer_size = (int32_t)k; - } - HDfree(props); - HDfree(props_src); +#ifdef H5_HAVE_LIBHDFS + if (h5tools_parse_hdfs_fapl_tuple(opt_arg, ',', &hdfs_fa_g) < 0) { + error_msg("failed to parse HDFS VFD configuration info\n"); + usage(h5tools_getprogname()); + free_handler(hand, argc); + hand = NULL; + h5tools_setstatus(EXIT_FAILURE); + goto done; } -#endif /* H5_HAVE_LIBHDFS */ +#else + error_msg("HDFS VFD not enabled.\n"); + h5tools_setstatus(EXIT_FAILURE); + goto done; +#endif break; case '?': @@ -1394,17 +1326,13 @@ error: int main(int argc, const char *argv[]) { - hid_t fid = -1; - hid_t gid = -1; + hid_t fid = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; hid_t fapl_id = H5P_DEFAULT; - H5E_auto2_t func; - H5E_auto2_t tools_func; H5O_info_t oi; struct handler_t *hand = NULL; int i; unsigned u; - void *edata; - void *tools_edata; char *fname = NULL; h5tools_setprogname(PROGRAMNAME); @@ -1413,63 +1341,50 @@ main(int argc, const char *argv[]) dump_function_table = &ddl_function_table; dump_indent = 0; - /* Disable error reporting */ - H5Eget_auto2(H5E_DEFAULT, &func, &edata); - H5Eset_auto2(H5E_DEFAULT, NULL, NULL); - /* Initialize h5tools lib */ h5tools_init(); - /* Disable tools error reporting */ - H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata); - H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL); - if((hand = parse_command_line(argc, argv))==NULL) { goto done; } - if (bin_output && outfname == NULL) { + if (bin_output && outfname_g == NULL) { error_msg("binary output requires a file name, use -o <filename>\n"); h5tools_setstatus(EXIT_FAILURE); goto done; } - if (enable_error_stack > 0) { - H5Eset_auto2(H5E_DEFAULT, func, edata); - H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata); - } - /* Check for conflicting options */ - if (doxml) { - if (!display_all) { + if (doxml_g) { + if (!dump_opts.display_all) { error_msg("option \"%s\" not available for XML\n", "to display selected objects"); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if (display_bb) { + else if (dump_opts.display_bb) { error_msg("option \"%s\" not available for XML\n", "--boot-block"); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if (display_oid == 1) { + else if (dump_opts.display_oid == 1) { error_msg("option \"%s\" not available for XML\n", "--object-ids"); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if (display_char == TRUE) { + else if (dump_opts.display_char == TRUE) { error_msg("option \"%s\" not available for XML\n", "--string"); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if (usingdasho) { + else if (dump_opts.usingdasho) { error_msg("option \"%s\" not available for XML\n", "--output"); h5tools_setstatus(EXIT_FAILURE); goto done; } } else { - if (xml_dtd_uri) { - warn_msg("option \"%s\" only applies with XML: %s\n", "--xml-dtd", xml_dtd_uri); + if (xml_dtd_uri_g) { + warn_msg("option \"%s\" only applies with XML: %s\n", "--xml-dtd", xml_dtd_uri_g); } } @@ -1479,57 +1394,50 @@ main(int argc, const char *argv[]) h5tools_setstatus(EXIT_FAILURE); goto done; } + + /* enable error reporting if command line option */ + h5tools_error_report(); + /* Initialize indexing options */ h5trav_set_index(sort_by, sort_order); - if (driver != NULL) { - void *conf_fa = NULL; + if (driver_name_g != NULL) { + h5tools_vfd_info_t vfd_info; + + vfd_info.info = NULL; + vfd_info.name = driver_name_g; - if (!strcmp(driver, "ros3")) { -#ifndef H5_HAVE_ROS3_VFD + if (!HDstrcmp(driver_name_g, drivernames[ROS3_VFD_IDX])) { +#ifdef H5_HAVE_ROS3_VFD + vfd_info.info = (void *)&ros3_fa_g; +#else error_msg("Read-Only S3 VFD not enabled.\n"); h5tools_setstatus(EXIT_FAILURE); goto done; -#else - conf_fa = (void *)&ros3_fa; -#endif /* H5_HAVE_ROS3_VFD */ +#endif } - else if (!HDstrcmp(driver, "hdfs")) { -#ifndef H5_HAVE_LIBHDFS - error_msg("HDFS VFD is not enabled.\n"); + else if (!HDstrcmp(driver_name_g, drivernames[HDFS_VFD_IDX])) { +#ifdef H5_HAVE_LIBHDFS + vfd_info.info = (void *)&hdfs_fa_g; +#else + error_msg("The HDFS VFD is not enabled.\n"); h5tools_setstatus(EXIT_FAILURE); goto done; -#else - conf_fa = (void *)&hdfs_fa; -#endif /* H5_HAVE_LIBHDFS */ +#endif } - if (conf_fa != NULL) { - fapl_id = H5Pcreate(H5P_FILE_ACCESS); - if (fapl_id < 0) { - error_msg("unable to create fapl entry\n"); - h5tools_setstatus(EXIT_FAILURE); - goto done; - } - /* driver guaranteed "ros3" or "hdfs" */ - /* conf_fa appropriate to driver */ - if (0 == h5tools_set_configured_fapl(fapl_id, driver, conf_fa)) { - error_msg("unable to set fapl\n"); - h5tools_setstatus(EXIT_FAILURE); - goto done; - } + if ((fapl_id = h5tools_get_fapl(H5P_DEFAULT, &vfd_info)) < 0) { + error_msg("unable to create FAPL for file access\n"); + h5tools_setstatus(EXIT_FAILURE); + goto done; } - } /* driver defined */ + } /* driver name defined */ while(opt_ind < argc) { fname = HDstrdup(argv[opt_ind++]); - if (fapl_id != H5P_DEFAULT) { - fid = H5Fopen(fname, H5F_ACC_RDONLY, fapl_id); - } - else { - fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, driver, NULL, 0); - } + fid = h5tools_fopen(fname, H5F_ACC_RDONLY, fapl_id, + (fapl_id == H5P_DEFAULT) ? FALSE : TRUE, NULL, 0); if (fid < 0) { error_msg("unable to open file \"%s\"\n", fname); @@ -1543,23 +1451,23 @@ main(int argc, const char *argv[]) /* Prepare to find objects that might be targets of a reference */ fill_ref_path_table(fid); - if(doxml) { + if(doxml_g) { /* initialize XML */ /* reset prefix! */ HDstrcpy(prefix, ""); /* make sure the URI is initialized to something */ - if (xml_dtd_uri == NULL) { - if (useschema) { - xml_dtd_uri = DEFAULT_XSD; + if (xml_dtd_uri_g == NULL) { + if (useschema_g) { + xml_dtd_uri_g = DEFAULT_XSD; } else { - xml_dtd_uri = DEFAULT_DTD; + xml_dtd_uri_g = DEFAULT_DTD; xmlnsprefix = ""; } } else { - if (useschema && HDstrcmp(xmlnsprefix,"")) { + if (useschema_g && HDstrcmp(xmlnsprefix,"")) { error_msg("Cannot set Schema URL for a qualified namespace--use -X or -U option with -D \n"); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -1592,16 +1500,16 @@ main(int argc, const char *argv[]) } /* end if */ /* start to dump - display file header information */ - if (!doxml) { + if (!doxml_g) { begin_obj(h5tools_dump_header_format->filebegin, fname, h5tools_dump_header_format->fileblockbegin); } else { PRINTVALSTREAM(rawoutstream, "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"); /* alternative first element, depending on schema or DTD. */ - if (useschema) { + if (useschema_g) { if (HDstrcmp(xmlnsprefix,"") == 0) { - PRINTSTREAM(rawoutstream, "<HDF5-File xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:noNamespaceSchemaLocation=\"%s\">\n", xml_dtd_uri); + PRINTSTREAM(rawoutstream, "<HDF5-File xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:noNamespaceSchemaLocation=\"%s\">\n", xml_dtd_uri_g); } else { /* TO DO: make -url option work in this case (may need new option) */ @@ -1621,13 +1529,13 @@ main(int argc, const char *argv[]) } } else { - PRINTSTREAM(rawoutstream, "<!DOCTYPE HDF5-File PUBLIC \"HDF5-File.dtd\" \"%s\">\n", xml_dtd_uri); + PRINTSTREAM(rawoutstream, "<!DOCTYPE HDF5-File PUBLIC \"HDF5-File.dtd\" \"%s\">\n", xml_dtd_uri_g); PRINTVALSTREAM(rawoutstream, "<HDF5-File>\n"); } } - if (!doxml) { - if (display_fi) { + if (!doxml_g) { + if (dump_opts.display_fi) { PRINTVALSTREAM(rawoutstream, "\n"); dump_fcontents(fid); end_obj(h5tools_dump_header_format->fileend,h5tools_dump_header_format->fileblockend); @@ -1635,20 +1543,20 @@ main(int argc, const char *argv[]) goto done; } - if (display_bb) + if (dump_opts.display_bb) dump_fcpl(fid); } - if(display_all) { + if(dump_opts.display_all) { if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) { error_msg("unable to open root group\n"); h5tools_setstatus(EXIT_FAILURE); } else { - if (!doxml) + if (!doxml_g) dump_indent += COL; dump_function_table->dump_group_function(gid, "/" ); - if (!doxml) + if (!doxml_g) dump_indent -= COL; PRINTVALSTREAM(rawoutstream, "\n"); } @@ -1661,7 +1569,7 @@ main(int argc, const char *argv[]) } else { /* Note: this option is not supported for XML */ - if(doxml) { + if(doxml_g) { error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -1675,7 +1583,7 @@ main(int argc, const char *argv[]) PRINTVALSTREAM(rawoutstream, "\n"); } - if (!doxml) { + if (!doxml_g) { end_obj(h5tools_dump_header_format->fileend, h5tools_dump_header_format->fileblockend); PRINTVALSTREAM(rawoutstream, "\n"); } @@ -1733,8 +1641,6 @@ done: /* To Do: clean up XML table */ - H5Eset_auto2(H5E_DEFAULT, func, edata); - leave(h5tools_getstatus()); } /* main */ diff --git a/tools/src/h5dump/h5dump.h b/tools/src/h5dump/h5dump.h index 801f60d..548af09 100644 --- a/tools/src/h5dump/h5dump.h +++ b/tools/src/h5dump/h5dump.h @@ -43,6 +43,7 @@ typedef struct h5dump_table_items_t { table_t *dset_table; /* Table of datasets */ table_t *type_table; /* Table of datatypes */ } h5dump_table_items_t; + typedef struct h5dump_table_list_t { size_t nalloc; size_t nused; @@ -51,8 +52,8 @@ typedef struct h5dump_table_list_t { h5dump_table_list_t table_list = {0, 0, NULL}; table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL; -unsigned dump_indent = 0; /*how far in to indent the line */ +unsigned dump_indent = 0; /* how far in to indent the line */ int unamedtype = 0; /* shared datatype with no name */ hbool_t hit_elink = FALSE; /* whether we have traversed an external link */ size_t prefix_len = 1024; @@ -60,23 +61,26 @@ char *prefix = NULL; const char *fp_format = NULL; /* things to display or which are set via command line parameters */ -int display_all = TRUE; -int display_oid = FALSE; -int display_data = TRUE; -int display_attr_data = TRUE; -int display_char = FALSE; /*print 1-byte numbers as ASCII */ -int usingdasho = FALSE; -int display_bb = FALSE; /*superblock */ -int display_dcpl = FALSE; /*dcpl */ -int display_fi = FALSE; /*file index */ -int display_ai = TRUE; /*array index */ -int display_escape = FALSE; /*escape non printable characters */ -int display_region = FALSE; /*print region reference data */ -int disable_compact_subset= FALSE; /* disable compact form of subset notation */ -int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/ -int include_attrs = TRUE; /* Display attributes */ -int display_vds_first = FALSE; /* vds display to all by default*/ -int vds_gap_size = 0; /* vds skip missing files default is none */ +typedef struct { + int display_all; + int display_oid; + int display_data; + int display_attr_data; + int display_char; /* print 1-byte numbers as ASCII */ + int usingdasho; + int display_bb; /* superblock */ + int display_dcpl; /* dcpl */ + int display_fi; /* file index */ + int display_ai; /* array index */ + int display_escape; /* escape non printable characters */ + int display_region; /* print region reference data */ + int disable_compact_subset; /* disable compact form of subset notation */ + int display_packed_bits; /* print 1-8 byte numbers as packed bits */ + int include_attrs; /* Display attributes */ + int display_vds_first; /* vds display to all by default */ + int vds_gap_size; /* vds skip missing files default is none */ +} dump_opt_t; +dump_opt_t dump_opts = {TRUE, FALSE, TRUE, TRUE, FALSE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, FALSE, FALSE, FALSE, TRUE, FALSE, 0}; #define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */ #define PACKED_BITS_SIZE_MAX (8*sizeof(long long)) /* Maximum bits size of integer types of packed-bits */ diff --git a/tools/src/h5dump/h5dump_ddl.c b/tools/src/h5dump/h5dump_ddl.c index 4fb8398..c752fbb 100644 --- a/tools/src/h5dump/h5dump_ddl.c +++ b/tools/src/h5dump/h5dump_ddl.c @@ -41,11 +41,6 @@ static int dump_extlink(hid_t group, const char *linkname, const char *objn * atomic datatype or committed/transient datatype. * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -70,11 +65,6 @@ dump_datatype(hid_t type) * array, or others. * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -97,14 +87,7 @@ dump_dataspace(hid_t space) * Purpose: attribute function callback called by H5Aiterate2, displays the attribute * * Return: Success: SUCCEED - * * Failure: FAIL - * - * Programmer: Ruey-Hsia Li - * - * Modifications: Pedro Vicente, October 4, 2007 - * Added H5A_info_t parameter to conform with H5Aiterate2 - * *------------------------------------------------------------------------- */ herr_t @@ -120,11 +103,13 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; ctx.cur_column = dump_indent; + ctx.display_index = dump_opts.display_ai; + ctx.display_char = dump_opts.display_char; attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT); - oid_output = display_oid; - data_output = display_data; - attr_data_output = display_attr_data; + oid_output = dump_opts.display_oid; + data_output = dump_opts.display_data; + attr_data_output = dump_opts.display_attr_data; string_dataformat = *outputformat; @@ -140,11 +125,11 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; h5dump_type_table = type_table; - h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id, display_ai, display_char); + h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id); h5dump_type_table = NULL; if(attr_id < 0) { @@ -163,18 +148,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * * displays everything in the specified object * * Return: Success: SUCCEED - * * Failure: FAIL - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * RMcG, November 2000 - * Added XML support. Also, optionally checks the op_data argument - * - * PVN, May 2008 - * Dump external links - * *------------------------------------------------------------------------- */ static herr_t @@ -183,12 +157,12 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR hid_t obj; hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */ herr_t ret = SUCCEED; - char *obj_path = NULL; /* Full path of object */ - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ + char *obj_path = NULL; /* Full path of object */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - hsize_t curr_pos = 0; /* total data element position */ + hsize_t curr_pos = 0; /* total data element position */ /* setup */ HDmemset(&buffer, 0, sizeof(h5tools_str_t)); @@ -211,7 +185,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; /* Build the object's path name */ @@ -268,16 +242,16 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR break; case H5O_TYPE_DATASET: - if(display_data) { + if(dump_opts.display_data) { if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) { error_msg("error in creating default access property list ID\n"); } - if (display_vds_first) { + if (dump_opts.display_vds_first) { if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0) error_msg("error in setting access property list ID, virtual_view\n"); } - if (vds_gap_size > 0) { - if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0) + if (dump_opts.vds_gap_size > 0) { + if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)dump_opts.vds_gap_size) < 0) error_msg("error in setting access property list ID, virtual_printf_gap\n"); } } @@ -583,7 +557,6 @@ done: * Purpose: Iterate and display attributes within the specified group * * Return: void - * *------------------------------------------------------------------------- */ void @@ -591,7 +564,7 @@ attr_iteration(hid_t gid, unsigned attr_crt_order_flags) { /* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set in the group for attributes, then, sort by creation order, otherwise by name */ - if(include_attrs) { + if(dump_opts.include_attrs) { if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) { if(H5Aiterate2(gid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) { error_msg("error getting attribute information\n"); @@ -613,7 +586,6 @@ attr_iteration(hid_t gid, unsigned attr_crt_order_flags) * Purpose: Iterate and display links within the specified group * * Return: void - * *------------------------------------------------------------------------- */ void @@ -634,15 +606,6 @@ link_iteration(hid_t gid, unsigned crt_order_flags) * Purpose: Dump named datatype * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * Pedro Vicente, March 27, 2006 - * added display of attributes - * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for - * other iteration orders - * *------------------------------------------------------------------------- */ void @@ -650,10 +613,10 @@ dump_named_datatype(hid_t tid, const char *name) { H5O_info_t oinfo; unsigned attr_crt_order_flags; - hid_t tcpl_id = -1; /* datatype creation property list ID */ - hsize_t curr_pos = 0; /* total data element position */ + hid_t tcpl_id = H5I_INVALID_HID; /* datatype creation property list ID */ + hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ + h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; @@ -678,7 +641,7 @@ dump_named_datatype(hid_t tid, const char *name) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; if ((tcpl_id = H5Tget_create_plist(tid)) < 0) { @@ -770,16 +733,6 @@ done: * Purpose: Dump everything within the specified group * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * - * Call to dump_all_cb -- add parameter to select everything. - * - * Pedro Vicente, October 1, 2007 - * handle several iteration orders for attributes and groups - * *------------------------------------------------------------------------- */ void @@ -792,11 +745,11 @@ dump_group(hid_t gid, const char *name) unsigned crt_order_flags; unsigned attr_crt_order_flags; char type_name[1024]; - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - hsize_t curr_pos = 0; /* total data element position */ + hsize_t curr_pos = 0; /* total data element position */ if ((gcpl_id = H5Gget_create_plist(gid)) < 0) { error_msg("error in getting group creation property list ID\n"); @@ -841,7 +794,7 @@ dump_group(hid_t gid, const char *name) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.need_prefix = TRUE; @@ -871,7 +824,7 @@ dump_group(hid_t gid, const char *name) } } /* end if */ - if(display_oid) + if(dump_opts.display_oid) h5tools_dump_oid(rawoutstream, outputformat, &ctx, gid); h5tools_dump_comment(rawoutstream, outputformat, &ctx, gid); @@ -934,14 +887,6 @@ dump_group(hid_t gid, const char *name) * Purpose: Dump the specified data set * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: - * Pedro Vicente, 2004, added dataset creation property list display - * Pedro Vicente, October 4, 2007, added parameters to H5Aiterate2() to allow for - * other iteration orders - * *------------------------------------------------------------------------- */ void @@ -950,11 +895,11 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - hid_t type, space; - unsigned attr_crt_order_flags; - hid_t dcpl_id; /* dataset creation property list ID */ - h5tools_str_t buffer; /* string into which to render */ - hsize_t curr_pos = 0; /* total data element position */ + hid_t type, space; + unsigned attr_crt_order_flags; + hid_t dcpl_id; /* dataset creation property list ID */ + h5tools_str_t buffer; /* string into which to render */ + hsize_t curr_pos = 0; /* total data element position */ HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; @@ -974,7 +919,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; if ((dcpl_id = H5Dget_create_plist(did)) < 0) { @@ -1015,25 +960,28 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) h5tools_dump_dataspace(rawoutstream, outputformat, &ctx, space); H5Sclose(space); - if(display_oid) { + if(dump_opts.display_oid) { h5tools_dump_oid(rawoutstream, outputformat, &ctx, did); } - if(display_dcpl) { + if(dump_opts.display_dcpl) { h5dump_type_table = type_table; h5tools_dump_dcpl(rawoutstream, outputformat, &ctx, dcpl_id, type, did); h5dump_type_table = NULL; } H5Pclose(dcpl_id); - if(display_data) { + ctx.sset = sset; + ctx.display_index = dump_opts.display_ai; + ctx.display_char = dump_opts.display_char; + if(dump_opts.display_data) { unsigned data_loop = 1; unsigned u; - if(display_packed_bits) + if(dump_opts.display_packed_bits) data_loop = packed_bits_num; for(u = 0; u < data_loop; u++) { - if(display_packed_bits) { + if(dump_opts.display_packed_bits) { ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); /* Render the element */ @@ -1069,7 +1017,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) case H5T_VLEN: case H5T_ARRAY: { - h5tools_dump_data(rawoutstream, outputformat, &ctx, did, TRUE, sset, display_ai, display_char); + h5tools_dump_data(rawoutstream, outputformat, &ctx, did, TRUE); } break; @@ -1112,13 +1060,6 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) * Purpose: Dump attribute or dataset data * * Return: void - * - * Programmer: Ruey-Hsia Li - * - * Modifications: pvn, print the matrix indices - * Albert Cheng, 2004/11/18 - * Add --string printing for attributes too. - * *------------------------------------------------------------------------- */ void @@ -1143,16 +1084,19 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; ctx.cur_column = dump_indent; + ctx.sset = sset; + ctx.display_index = display_index; + ctx.display_char = dump_opts.display_char; if(obj_data == DATASET_DATA) print_dataset = TRUE; - h5tools_dump_data(rawoutstream, outputformat, &ctx, obj_id, print_dataset, sset, display_index, display_char); + h5tools_dump_data(rawoutstream, outputformat, &ctx, obj_id, print_dataset); } @@ -1162,11 +1106,6 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index) * Purpose: prints file creation property list information * * Return: void - * - * Programmer: pvn - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -1177,9 +1116,9 @@ dump_fcpl(hid_t fid) size_t off_size; /* size of offsets in the file */ size_t len_size; /* size of lengths in the file */ H5F_fspace_strategy_t fs_strategy; /* file space strategy */ - hbool_t fs_persist; /* Persisting free-space or not */ - hsize_t fs_threshold; /* free-space section threshold */ - hsize_t fsp_size; /* file space page size */ + hbool_t fs_persist; /* Persisting free-space or not */ + hsize_t fs_threshold; /* free-space section threshold */ + hsize_t fsp_size; /* file space page size */ H5F_info2_t finfo; /* file information */ #ifdef SHOW_FILE_DRIVER hid_t fapl; /* file access property list ID */ @@ -1260,13 +1199,17 @@ dump_fcpl(hid_t fid) indentation(dump_indent + COL); if(fs_strategy == H5F_FSPACE_STRATEGY_FSM_AGGR) { PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FSPACE_STRATEGY_FSM_AGGR"); - } else if(fs_strategy == H5F_FSPACE_STRATEGY_PAGE) { + } + else if(fs_strategy == H5F_FSPACE_STRATEGY_PAGE) { PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FSPACE_STRATEGY_PAGE"); - } else if(fs_strategy == H5F_FSPACE_STRATEGY_AGGR) { + } + else if(fs_strategy == H5F_FSPACE_STRATEGY_AGGR) { PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FSPACE_STRATEGY_AGGR"); - } else if(fs_strategy == H5F_FSPACE_STRATEGY_NONE) { + } + else if(fs_strategy == H5F_FSPACE_STRATEGY_NONE) { PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FSPACE_STRATEGY_NONE"); - } else + } + else PRINTSTREAM(rawoutstream, "%s %s\n", "FILE_SPACE_STRATEGY", "Unknown strategy"); indentation(dump_indent + COL); PRINTSTREAM(rawoutstream, "%s %s\n","FREE_SPACE_PERSIST", fs_persist ? "TRUE" : "FALSE"); @@ -1295,11 +1238,6 @@ dump_fcpl(hid_t fid) * Purpose: prints all objects * * Return: void - * - * Programmer: pvn - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -1470,13 +1408,12 @@ lnk_search(const char *path, const H5L_info_t *li, void *_op_data) * Purpose: Handle objects from the command. * * Return: void - * *------------------------------------------------------------------------- */ void handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) { - hid_t gid = -1; + hid_t gid = H5I_INVALID_HID; if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0) { error_msg("unable to open root group\n"); @@ -1525,30 +1462,21 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H * Purpose: Handle the attributes from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: - * - * PVN, May 2008 - * add an extra parameter PE, to allow printing/not printing of error messages - * *------------------------------------------------------------------------- */ void -handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) +handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED *data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) { - hid_t oid = -1; - hid_t attr_id = -1; + hid_t oid = H5I_INVALID_HID; + hid_t attr_id = H5I_INVALID_HID; char *obj_name = NULL; char *attr_name = NULL; int j; - h5tools_str_t buffer; /* string into which to render */ - h5tools_context_t ctx; /* print context */ + h5tools_str_t buffer; /* string into which to render */ + h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - hsize_t curr_pos = 0; /* total data element position */ + hsize_t curr_pos = 0; /* total data element position */ j = (int)HDstrlen(attr) - 1; obj_name = (char *)HDmalloc((size_t)j + 2); @@ -1574,6 +1502,8 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent / COL; ctx.cur_column = dump_indent; + ctx.display_index = dump_opts.display_ai; + ctx.display_char = dump_opts.display_char; string_dataformat = *outputformat; @@ -1589,7 +1519,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/"); @@ -1628,12 +1558,12 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H } /* end if */ attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT); - oid_output = display_oid; - data_output = display_data; - attr_data_output = display_attr_data; + oid_output = dump_opts.display_oid; + data_output = dump_opts.display_data; + attr_data_output = dump_opts.display_attr_data; h5dump_type_table = type_table; - h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id, display_ai, display_char); + h5tools_dump_attribute(rawoutstream, outputformat, &ctx, attr_name, attr_id); h5dump_type_table = NULL; if(attr_id < 0) { @@ -1671,19 +1601,6 @@ error: * Purpose: Handle the datasets from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: - * Pedro Vicente, Tuesday, January 15, 2008 - * check for block overlap\ - * - * Pedro Vicente, May 8, 2008 - * added a flag PE that prints/not prints error messages - * added for cases of external links not found, to avoid printing of - * objects not found, since external links are dumped on a trial error basis - * *------------------------------------------------------------------------- */ void @@ -1695,16 +1612,16 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis struct subset_t *sset = (struct subset_t *)data; const char *real_name = display_name ? display_name : dset; - if(display_data) { + if(dump_opts.display_data) { if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) { error_msg("error in creating default access property list ID\n"); } - if (display_vds_first) { + if (dump_opts.display_vds_first) { if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0) error_msg("error in setting access property list ID, virtual_view\n"); } - if (vds_gap_size > 0) { - if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0) + if (dump_opts.vds_gap_size > 0) { + if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)dump_opts.vds_gap_size) < 0) error_msg("error in setting access property list ID, virtual_printf_gap\n"); } } @@ -1844,18 +1761,6 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis * Purpose: Handle the groups from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: Pedro Vicente, September 26, 2007 - * handle creation order - * - * Pedro Vicente, May 8, 2008 - * added a flag PE that prints/not prints error messages - * added for cases of external links not found, to avoid printing of - * objects not found, since external links are dumped on a trial error basis - * *------------------------------------------------------------------------- */ void @@ -1900,12 +1805,6 @@ handle_groups(hid_t fid, const char *group, void H5_ATTR_UNUSED *data, int pe, c * Purpose: Handle soft or UD links from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: - * *------------------------------------------------------------------------- */ void @@ -1986,17 +1885,6 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT * Purpose: Handle the datatypes from the command. * * Return: void - * - * Programmer: Bill Wendling - * Tuesday, 9. January 2001 - * - * Modifications: - * - * Pedro Vicente, May 8, 2008 - * added a flag PE that prints/not prints error messages - * added for cases of external links not found, to avoid printing of - * objects not found, since external links are dumped on a trial error basis - * *------------------------------------------------------------------------- */ void @@ -2061,19 +1949,10 @@ handle_datatypes(hid_t fid, const char *type, void H5_ATTR_UNUSED * data, int pe /*------------------------------------------------------------------------- * Function: dump_extlink * - * made by: PVN - * * Purpose: Dump an external link - * Since external links are soft links, they are dumped on a trial error - * basis, attempting to dump as a dataset, as a group and as a named datatype - * Error messages are supressed - * - * Modifications: - * Neil Fortner - * 13 October 2008 - * Function basically rewritten. No longer directly opens the target file, - * now initializes a new set of tables for the external file. No longer - * dumps on a trial and error basis, but errors are still suppressed. + * Function does not directly open the target file, + * it initializes a new set of tables for the external file. + * Errors are suppressed. * *------------------------------------------------------------------------- */ diff --git a/tools/src/h5dump/h5dump_extern.h b/tools/src/h5dump/h5dump_extern.h index 00d3bd2..c615621 100644 --- a/tools/src/h5dump/h5dump_extern.h +++ b/tools/src/h5dump/h5dump_extern.h @@ -50,32 +50,35 @@ typedef struct h5dump_table_list_t { extern h5dump_table_list_t table_list; extern table_t *group_table, *dset_table, *type_table; -extern unsigned dump_indent; /*how far in to indent the line */ -extern int unamedtype; /* shared datatype with no name */ -extern hbool_t hit_elink; /* whether we have traversed an external link */ +extern unsigned dump_indent; /* how far in to indent the line */ +extern int unamedtype; /* shared datatype with no name */ +extern hbool_t hit_elink; /* whether we have traversed an external link */ extern size_t prefix_len; extern char *prefix; extern const char *fp_format; /* things to display or which are set via command line parameters */ -extern int display_all; -extern int display_oid; -extern int display_data; -extern int display_attr_data; -extern int display_char; /*print 1-byte numbers as ASCII */ -extern int usingdasho; -extern int display_bb; /*superblock */ -extern int display_dcpl; /*dcpl */ -extern int display_fi; /*file index */ -extern int display_ai; /*array index */ -extern int display_escape; /*escape non printable characters */ -extern int display_region; /*print region reference data */ -extern int disable_compact_subset; /* disable compact form of subset notation */ -extern int display_packed_bits; /*print 1-8 byte numbers as packed bits*/ -extern int include_attrs; /* Display attributes */ -extern int display_vds_first; /* vds display to first missing */ -extern int vds_gap_size; /* vds skip missing files */ +typedef struct { + int display_all; + int display_oid; + int display_data; + int display_attr_data; + int display_char; /* print 1-byte numbers as ASCII */ + int usingdasho; + int display_bb; /* superblock */ + int display_dcpl; /* dcpl */ + int display_fi; /* file index */ + int display_ai; /* array index */ + int display_escape; /* escape non printable characters */ + int display_region; /* print region reference data */ + int disable_compact_subset; /* disable compact form of subset notation */ + int display_packed_bits; /* print 1-8 byte numbers as packed bits */ + int include_attrs; /* Display attributes */ + int display_vds_first; /* vds display to all by default */ + int vds_gap_size; /* vds skip missing files default is none */ +} dump_opt_t; +extern dump_opt_t dump_opts; #define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */ #define PACKED_BITS_SIZE_MAX 8*sizeof(long long) /* Maximum bits size of integer types of packed-bits */ diff --git a/tools/src/h5dump/h5dump_xml.c b/tools/src/h5dump/h5dump_xml.c index fdbdd40..f2cca21 100644 --- a/tools/src/h5dump/h5dump_xml.c +++ b/tools/src/h5dump/h5dump_xml.c @@ -162,7 +162,7 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; /* Build the object's path name */ @@ -609,7 +609,7 @@ xml_name_to_XID(const char *str , char *outstr, int outlen, int gen) HDsprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno); - return(0); + return 0; } static const char *quote = """; @@ -719,15 +719,15 @@ xml_escape_the_name(const char *str) * Programmer: REMcG *------------------------------------------------------------------------- */ -static char * +static char * xml_escape_the_string(const char *str, int slen) { size_t extra; size_t len; size_t i; - const char *cp; - char *ncp; - char *rcp; + const char *cp = NULL; + char *ncp = NULL; + char *rcp = NULL; size_t ncp_len; if (!str) @@ -770,29 +770,31 @@ xml_escape_the_string(const char *str, int slen) if (*cp == '\\') { *ncp++ = '\\'; + ncp_len--; *ncp = *cp; esc_len = 1; } else if (*cp == '\"') { *ncp++ = '\\'; + ncp_len--; *ncp = *cp; esc_len = 1; } else if (*cp == '\'') { + HDstrncpy(ncp, apos, ncp_len); esc_len = HDstrlen(apos); - HDstrncpy(ncp, apos, esc_len); } else if (*cp == '<') { + HDstrncpy(ncp, lt, ncp_len); esc_len = HDstrlen(lt); - HDstrncpy(ncp, lt, esc_len); } else if (*cp == '>') { + HDstrncpy(ncp, gt, ncp_len); esc_len = HDstrlen(gt); - HDstrncpy(ncp, gt, esc_len); } else if (*cp == '&') { + HDstrncpy(ncp, amp, ncp_len); esc_len = HDstrlen(amp); - HDstrncpy(ncp, amp, esc_len); } else { *ncp = *cp; @@ -873,7 +875,7 @@ xml_print_datatype(hid_t type, unsigned in_group) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; if(!in_group && H5Tcommitted(type) > 0) { @@ -1523,7 +1525,7 @@ xml_dump_datatype(hid_t type) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.indent_level++; @@ -1654,7 +1656,7 @@ xml_dump_dataspace(hid_t space) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.indent_level++; @@ -1777,22 +1779,15 @@ xml_dump_dataspace(hid_t space) * the h5tools library. * * Return: void - * - * Programmer: REMcG *------------------------------------------------------------------------- */ void -xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, int H5_ATTR_UNUSED pindex) +xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED *sset, int H5_ATTR_UNUSED pindex) { - hid_t space = -1; - hid_t type = -1; - hid_t p_type = -1; - hsize_t size[64]; - hsize_t nelmts = 1; - int ndims; - int i; + hid_t space = H5I_INVALID_HID; + hid_t type = H5I_INVALID_HID; + hid_t p_type = H5I_INVALID_HID; int status = -1; - void *buf = NULL; hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ @@ -1861,7 +1856,7 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, datactx.need_prefix = TRUE; datactx.indent_level = ctx.indent_level; datactx.cur_column = ctx.cur_column; - status = h5tools_dump_dset(rawoutstream, outputformat, &datactx, obj_id, NULL); + status = h5tools_dump_dset(rawoutstream, outputformat, &datactx, obj_id); } } else { @@ -1881,47 +1876,17 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t H5_ATTR_UNUSED * sset, status = xml_print_strs(obj_id, ATTRIBUTE_DATA); } else { /* all other data */ - /* VL data special information */ - unsigned int vl_data = 0; /* contains VL datatypes */ - - p_type = H5Tget_native_type(type, H5T_DIR_DEFAULT); - - /* Check if we have VL data in the dataset's datatype */ - if (h5tools_detect_vlen(p_type) == TRUE) - vl_data = TRUE; - - H5Tclose(type); - space = H5Aget_space(obj_id); if(space == H5S_NULL || space == H5S_NO_CLASS) { status = SUCCEED; } else { - ndims = H5Sget_simple_extent_dims(space, size, NULL); - - for (i = 0; i < ndims; i++) - nelmts *= size[i]; - - if((buf = HDmalloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type))))) == NULL) { - error_msg("unable to allocate buffer\n"); - h5tools_setstatus(EXIT_FAILURE); - status = FAIL; - } - else { - if (H5Aread(obj_id, p_type, buf) >= 0) { - h5tools_context_t datactx; - HDmemset(&datactx, 0, sizeof(datactx)); - datactx.need_prefix = TRUE; - datactx.indent_level = ctx.indent_level; - datactx.cur_column = ctx.cur_column; - status = h5tools_dump_mem(rawoutstream, outputformat, &datactx, obj_id, p_type, space, buf); - } - /* Reclaim any VL memory, if necessary */ - if (vl_data) - H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf); - - HDfree(buf); - } + h5tools_context_t datactx; + HDmemset(&datactx, 0, sizeof(datactx)); + datactx.need_prefix = TRUE; + datactx.indent_level = ctx.indent_level; + datactx.cur_column = ctx.cur_column; + status = h5tools_dump_mem(rawoutstream, outputformat, &datactx, obj_id); } H5Tclose(p_type); H5Sclose(space); @@ -1981,9 +1946,9 @@ herr_t xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *info, void H5_ATTR_UNUSED * op_data) { - hid_t attr_id = -1; - hid_t type = -1; - hid_t space = -1; + hid_t attr_id = H5I_INVALID_HID; + hid_t type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; H5S_class_t space_type; hsize_t curr_pos = 0; /* total data element position */ h5tools_str_t buffer; /* string into which to render */ @@ -2014,7 +1979,7 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.need_prefix = TRUE; @@ -2036,7 +2001,7 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED ctx.indent_level++; dump_indent += COL; - if (display_attr_data && space_type != H5S_NULL) { + if (dump_opts.display_attr_data && space_type != H5S_NULL) { switch (H5Tget_class(type)) { case H5T_INTEGER: case H5T_FLOAT: @@ -2315,7 +2280,7 @@ xml_dump_named_datatype(hid_t type, const char *name) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; dtxid = (char *)HDmalloc((size_t)100); @@ -2528,7 +2493,7 @@ xml_dump_group(hid_t gid, const char *name) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; if(HDstrcmp(name, "/") == 0) { @@ -2818,8 +2783,8 @@ static int xml_print_refs(hid_t did, int source) { herr_t e; - hid_t type = -1; - hid_t space = -1; + hid_t type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; hssize_t ssiz = -1; hsize_t i; size_t tsiz; @@ -2904,7 +2869,7 @@ xml_print_refs(hid_t did, int source) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; for (i = 0; i < (hsize_t)ssiz; i++) { @@ -2967,8 +2932,8 @@ static int xml_print_strs(hid_t did, int source) { herr_t e; - hid_t type = -1; - hid_t space = -1; + hid_t type = H5I_INVALID_HID; + hid_t space = H5I_INVALID_HID; hssize_t ssiz = -1; htri_t is_vlstr = FALSE; size_t tsiz = 0; @@ -3052,7 +3017,7 @@ xml_print_strs(hid_t did, int source) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; for (i = 0; i < (hsize_t)ssiz; i++) { @@ -3164,7 +3129,7 @@ check_filters(hid_t dcpl) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; nfilt = H5Pget_nfilters(dcpl); @@ -3300,7 +3265,7 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; ctx.indent_level++; @@ -3578,12 +3543,10 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) * Purpose: Dump a description of an HDF5 dataset in XML. * * Return: void - * - * Programmer: REMcG *------------------------------------------------------------------------- */ void -xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * sset) +xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED *sset) { hid_t type; hid_t space; @@ -3640,7 +3603,7 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; xml_name_to_XID(tmp, rstr, 100, 1); @@ -3929,7 +3892,7 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s dump_indent -= COL; tempi = H5Dget_storage_size(did); - if (display_data && (tempi > 0)) { + if (dump_opts.display_data && (tempi > 0)) { switch (H5Tget_class(type)) { case H5T_INTEGER: case H5T_FLOAT: @@ -4154,7 +4117,7 @@ xml_print_enum(hid_t type) unsigned char *value = NULL; /*value array */ unsigned nmembs; /*number of members */ hid_t super; /*enum base integer type */ - hid_t native = -1; /*native integer datatype */ + hid_t native = H5I_INVALID_HID; /*native integer datatype */ size_t dst_size; /*destination value type size */ unsigned i; /*miscellaneous counters */ size_t j; @@ -4185,7 +4148,7 @@ xml_print_enum(hid_t type) else string_dataformat.line_ncols = h5tools_nCols; - string_dataformat.do_escape = display_escape; + string_dataformat.do_escape = dump_opts.display_escape; outputformat = &string_dataformat; nmembs = (unsigned)H5Tget_nmembers(type); |