Sync 1.14 branch with develop (#3923)

* Fix build error on freebsd (#3883)

Fixes:

checking for config freebsd12.1... no
checking for config freebsd... found
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpicc' is GNU gcc-9.2.0
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpif90' is GNU gfortran-9.2.0
stdout: .: cannot open ./config/classic-fflags: No such file or directory

* Correct CMake command and example packaging (#3888)

* Feat: Hashpin sensitive dependencies on GitHub Actions and enable Dependabot to update them monthly (#3892)

* feat: hashpin sensitive dependencies on GHAs

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

* feat: enable dependabot for monthly updates on GHA

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

---------

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

* Some changes to portal links when they could be found on docs.hdfgroup.org, and changed the helpdesk link to help.hdfgroup.org (#3893)

* Updated some portal links to go directly to docs.hdfgroup. 

* Fixed some portal and help desk links

* Add variable option syncing for examples (#3885)

* Add period(.) at the end of the sentence for consistency. (#3897)

* Remove redundant backslash character from comment. (#3899)

* Disable doxygen as errors for netcdf (#3900)

* disable building doxygen for netcdf test

* Doc versions (#3903)

* Added missing \since tags to H5D.

* Committing clang-format changes

* Fixed H5T version info.

* Committing clang-format changes

* Added missing version info to H5E.

* Committing clang-format changes

* Added version info to H5F public APIs.

* Committing clang-format changes

* Added missing H5Z public API version info.

* Added missing version info to H5G public APIs

* Added missing version info to H5I public API.

* Added missing version info to H5 public APIs

* Committing clang-format changes

* Added missing version info to H5P public APIs

* Added missing version info to H5R public APIs

* Fix comment error.

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Change Trouble Shooting to Troubleshooting (#3905)

* Implement optimized support for vector I/O in Subfiling VFD (#3896)

Vector I/O requests are now processed within a single
set of I/O call batches, rather than each I/O vector
entry (tuple constructed from the types, addrs, sizes
and bufs arrays) being processed individually. This allows I/O to be
more efficiently parallelized among the I/O concentrator processes
during large I/O requests.

* Fixed some calculations and add test cases for issues spotted from review

* Removed a variable that was compensating for previous miscalculations

* Add 'warning density' computation to the warnhist script (#3910)

* Add 'warning density' computation to the warnhist script, along with several
cleanups to it.   Add "--enable-show-all-warnings" configure (and CMake)
option to disable compiler diagnostic suppression (and therefore show all the
otherwise suppressed compiler diagnostics), disabled by default.  Clean up
a buncn of misc. warnings.

Signed-off-by: Quincey Koziol <qkoziol@amazon.com>

* Added H5Fdelete_f with test (#3912)

* New Fortran Examples added (#3916)

* added subfiling example

* Added filtered writes with no selection example

* Version and space corrections.

* Restore H5_VERSION definition in configure.ac.

* renamed defined H5_VERS* to avoid conflicts (#3926)

2 files changed, 44 insertions, 44 deletions

diff --git a/tools/src/h5import/CMakeLists.txt b/tools/src/h5import/CMakeLists.txt
index b2337cd..f8268a1 100644
--- a/tools/src/h5import/CMakeLists.txt
+++ b/tools/src/h5import/CMakeLists.txt
@@ -6,7 +6,7 @@ project (HDF5_TOOLS_SRC_H5IMPORT C)
 # --------------------------------------------------------------------
 if (BUILD_STATIC_LIBS)
   add_executable (h5import ${HDF5_TOOLS_SRC_H5IMPORT_SOURCE_DIR}/h5import.c ${HDF5_TOOLS_SRC_H5IMPORT_SOURCE_DIR}/h5import.h)
-  target_include_directories (h5import PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_INCLUDE_DIRS};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_include_directories (h5import PRIVATE "${HDF5_TOOLS_ROOT_DIR}/lib;${HDF5_SRC_INCLUDE_DIRS};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
   TARGET_C_PROPERTIES (h5import STATIC)
   target_link_libraries (h5import PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   #set_target_properties (h5import PROPERTIES COMPILE_DEFINITIONS H5DEBUGIMPORT)
@@ -18,7 +18,7 @@ endif ()
 
 if (BUILD_SHARED_LIBS)
   add_executable (h5import-shared ${HDF5_TOOLS_SRC_H5IMPORT_SOURCE_DIR}/h5import.c ${HDF5_TOOLS_SRC_H5IMPORT_SOURCE_DIR}/h5import.h)
-  target_include_directories (h5import-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_INCLUDE_DIRS};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_include_directories (h5import-shared PRIVATE "${HDF5_TOOLS_ROOT_DIR}/lib;${HDF5_SRC_INCLUDE_DIRS};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
   TARGET_C_PROPERTIES (h5import-shared SHARED)
   target_link_libraries (h5import-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   #set_target_properties (h5import-shared PROPERTIES COMPILE_DEFINITIONS H5DEBUGIMPORT)
diff --git a/tools/src/h5import/h5import.c b/tools/src/h5import/h5import.c
index 2d3574a..663f68a 100644
--- a/tools/src/h5import/h5import.c
+++ b/tools/src/h5import/h5import.c
@@ -26,48 +26,48 @@
 #endif
 
 /* Local function declarations */
-static int gtoken(char *s);
-static int process(struct Options *opt);
-static int processConfigurationFile(char *infile, struct Input *in);
-static int mapKeywordToIndex(char *key);
-static int parsePathInfo(struct path_info *path, char *strm);
-static int parseDimensions(struct Input *in, char *strm);
-static int getInputSize(struct Input *in, int ival);
-static int getInputClass(struct Input *in, char *strm);
-static int getInputClassType(struct Input *in, char *strm);
-static int getInputByteOrder(struct Input *in, FILE *strm);
-static int InputClassStrToInt(char *temp);
-static int getRank(struct Input *in, FILE *strm);
-static int getDimensionSizes(struct Input *in, FILE *strm);
-static int getOutputSize(struct Input *in, FILE *strm);
-static int getOutputClass(struct Input *in, FILE *strm);
-static int OutputClassStrToInt(char *temp);
-static int getOutputArchitecture(struct Input *in, FILE *strm);
-static int OutputArchStrToInt(const char *temp);
-static int getOutputByteOrder(struct Input *in, FILE *strm);
-static int OutputByteOrderStrToInt(const char *temp);
-static int getChunkedDimensionSizes(struct Input *in, FILE *strm);
-static int getCompressionType(struct Input *in, FILE *strm);
-static int CompressionTypeStrToInt(char *temp);
-static int getCompressionParameter(struct Input *in, FILE *strm);
-static int getExternalFilename(struct Input *in, FILE *strm);
-static int getMaximumDimensionSizes(struct Input *in, FILE *strm);
-static int processDataFile(char *infile, struct Input *in, hid_t file_id);
-static int readIntegerData(FILE *strm, struct Input *in);
-static int readFloatData(FILE *strm, struct Input *in);
-static int allocateIntegerStorage(struct Input *in);
-static int allocateFloatStorage(struct Input *in);
-static int readUIntegerData(FILE *strm, struct Input *in);
-static int allocateUIntegerStorage(struct Input *in);
-static int validateConfigurationParameters(struct Input *in);
-static int processStrData(FILE *strm, struct Input *in, hid_t file_id);
-static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id);
-uint16_t   swap_uint16(uint16_t val);
-int16_t    swap_int16(int16_t val);
-uint32_t   swap_uint32(uint32_t val);
-int32_t    swap_int32(int32_t val);
-int64_t    swap_int64(int64_t val);
-uint64_t   swap_uint64(uint64_t val);
+static int             gtoken(char *s);
+static int             process(struct Options *opt);
+static int             processConfigurationFile(char *infile, struct Input *in);
+static int             mapKeywordToIndex(char *key);
+static int             parsePathInfo(struct path_info *path, char *strm);
+static int             parseDimensions(struct Input *in, char *strm);
+static int             getInputSize(struct Input *in, int ival);
+static int             getInputClass(struct Input *in, char *strm);
+static int             getInputClassType(struct Input *in, char *strm);
+static int             getInputByteOrder(struct Input *in, FILE *strm);
+static int             InputClassStrToInt(char *temp);
+static int             getRank(struct Input *in, FILE *strm);
+static int             getDimensionSizes(struct Input *in, FILE *strm);
+static int             getOutputSize(struct Input *in, FILE *strm);
+static int             getOutputClass(struct Input *in, FILE *strm);
+static int             OutputClassStrToInt(char *temp);
+static int             getOutputArchitecture(struct Input *in, FILE *strm);
+static int             OutputArchStrToInt(const char *temp);
+static int             getOutputByteOrder(struct Input *in, FILE *strm);
+static int             OutputByteOrderStrToInt(const char *temp);
+static int             getChunkedDimensionSizes(struct Input *in, FILE *strm);
+static int             getCompressionType(struct Input *in, FILE *strm);
+static int             CompressionTypeStrToInt(char *temp);
+static int             getCompressionParameter(struct Input *in, FILE *strm);
+static int             getExternalFilename(struct Input *in, FILE *strm);
+static int             getMaximumDimensionSizes(struct Input *in, FILE *strm);
+static int             processDataFile(char *infile, struct Input *in, hid_t file_id);
+static int             readIntegerData(FILE *strm, struct Input *in);
+static int             readFloatData(FILE *strm, struct Input *in);
+static int             allocateIntegerStorage(struct Input *in);
+static int             allocateFloatStorage(struct Input *in);
+static int             readUIntegerData(FILE *strm, struct Input *in);
+static int             allocateUIntegerStorage(struct Input *in);
+static int             validateConfigurationParameters(struct Input *in);
+static int             processStrData(FILE *strm, struct Input *in, hid_t file_id);
+static int             processStrHDFData(FILE *strm, struct Input *in, hid_t file_id);
+H5_ATTR_CONST uint16_t swap_uint16(uint16_t val);
+H5_ATTR_CONST int16_t  swap_int16(int16_t val);
+H5_ATTR_CONST uint32_t swap_uint32(uint32_t val);
+H5_ATTR_CONST int32_t  swap_int32(int32_t val);
+H5_ATTR_CONST int64_t  swap_int64(int64_t val);
+H5_ATTR_CONST uint64_t swap_uint64(uint64_t val);
 
 int
 main(int argc, char *argv[])