Reorg tools perform to provide h5perf for installation (#884)

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* HDFFV-11113 long double in tools

* HDFFV-11113 add note

* Disable long double tests for now

* HDFFV-11228 remove arbitrary CMake warning groups.

* Make each flag a string

* Some Javadoc warning fixes

* Updated javadoc fixes

* # WARNING: head commit changed in the meantime

HDFFV-11229 Fix long double usage in tools and java

Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.

* Committing clang-format changes

* HDFFV-11229 Add release note

* HDFFV-11229 windows testfile needed

* fix typo

* Remove non supported message text

* HDFFV-11229 - change ldouble test to check both native and general

* HDFFV-11229 add second file compare

* HDFFV-11229 fix reference file

* HDFFV-11229 autotools check two refs

* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output

* Committing clang-format changes

* Update release note

* Update attribute type of ref file

* Change source of ninja for macs

* try port instead of brew

* Recommended is to use brew.

* Undo non long double changes

* remove unneeded file

* Fix perl and doxygen CMake code

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

* Add stamp files to BYPRODUCTS

* Only one copy of file exists

* Fix custom cmmand depends targets

* Fix fortran custom command DEPENDS

* Add LD_LIBRARY_PATH to tests

* Add custom target for DEPENDS

* Add h5detect conditionaly to generated target DEPENDS

* Correct DEPENDS targets

* Parallel builds need the mpi compiler for pkgconfig scripts.

* install only if MPI build

* Fortran target depends

* Remove incorrect source attribute

* doxygen adjustments

* doxygen build updates

* Correct version

* Correct function version - function has been merged to 1.12

* Correct version string for map functions

* Cleanup warnings for tools debug builds

* TRILAB-227 - fix indexing for h5diff selections

* Correct location of pos to index function call

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES because of AppleClang

* if blocks needed for build modes

* Update list of DT platforms

* VS2019 correctly displays float values

* revert VS2019 change

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

* Java reference functions updated

enabled fortran in cmake gcc action yaml file
java reference test changed to correctly test refs
jni reference functions that create ids changed to use jni id logging

* Correct BYPRODUCTS argument

* Correct more genereated files BYPRODUCTS

* BYPRODUCTS must have unique locations

* Fix typo

* Fix fortran configure checks

* Rework H5_PAC_C_MAX_REAL_PRECISION setting logic

* Add note about fortran configure change

* Adds a quick for for some egregious chunk_info badness (#722)

* Fixes issue with ccmake that prevents building Fortran (#723)

ccmake runs iteratively, and the check_fortran_source_runs
macros were clobbering a single output file that did not
get updated on further configure iterations

* Fix conflicts with merge

* Move MAX_PRECISION back to HDF5UseFortran.cmake

* Use STREQUAL to test macro argument

* Move C language test to ConfigureChecks from HDF5UseFortran

* MAX_PRECISION defines must be defined

* Organize flags and align autotools and cmake

* Fix comment in no-error-general warnings files.

* Flag cleanup and fix typos

* Add comment

* Correct VAR used to find configure time file

* Set the path correctly

* Update missing release note info.

* Update code owners

* Correct JIRA note

* add known problem.

* Use only core library for testing dynamic plugins.

* Reorg tools perform to provide h5perf for installation

* Correct file paths

* Correct path

* Add new src folder to makefile list

* Remove bin_PROGRAMS from TEST_PROG

* Default h5perf executables to static build

* Remove test lib dependency from h5perf

* format adjustments

* Remove test lib from autotools makefile

* Add note

* h5perf needs the math library

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>

1 files changed, 109 insertions, 0 deletions

diff --git a/tools/src/h5perf/pio_perf.h b/tools/src/h5perf/pio_perf.h
new file mode 100644
index 0000000..8924c20
--- /dev/null
+++ b/tools/src/h5perf/pio_perf.h
@@ -0,0 +1,109 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group.                                               *
+ * All rights reserved.                                                      *
+ *                                                                           *
+ * This file is part of HDF5.  The full HDF5 copyright notice, including     *
+ * terms governing use, modification, and redistribution, is contained in    *
+ * the COPYING file, which can be found at the root of the source code       *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
+ * If you do not have access to either file, you may request a copy from     *
+ * help@hdfgroup.org.                                                        *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef PIO_PERF_H
+#define PIO_PERF_H
+
+#ifndef STANDALONE
+#include "io_timer.h"
+#include "H5private.h"
+#include "h5tools.h"
+#include "h5tools_utils.h"
+#else
+#include "io_timer.h"
+#include "pio_standalone.h"
+#endif
+
+#ifdef H5_HAVE_PARALLEL
+extern MPI_Info h5_io_info_g; /* MPI INFO object for IO */
+#endif
+
+#ifdef H5_HAVE_PARALLEL
+int  h5_set_info_object(void);
+void h5_dump_info_object(MPI_Info info);
+#endif
+
+/* setup the dataset no fill option if this is v1.5 or more */
+#if H5_VERS_MAJOR > 1 || H5_VERS_MINOR > 4
+#define H5_HAVE_NOFILL 1
+#endif
+
+typedef enum iotype_ {
+    POSIXIO,
+    MPIO,
+    PHDF5
+    /*NUM_TYPES*/
+} iotype;
+
+typedef struct parameters_ {
+    iotype   io_type;       /* The type of IO test to perform       */
+    int      num_procs;     /* Maximum number of processes to use   */
+    long     num_files;     /* Number of files to create            */
+    long     num_dsets;     /* Number of datasets to create         */
+    off_t    num_bytes;     /* Number of bytes in each dset         */
+    int      num_iters;     /* Number of times to loop doing the IO */
+    size_t   buf_size;      /* Buffer size                          */
+    size_t   blk_size;      /* Block size                           */
+    unsigned interleaved;   /* Interleaved vs. contiguous blocks    */
+    unsigned collective;    /* Collective vs. independent I/O       */
+    unsigned dim2d;         /* 1D vs. 2D                            */
+    hsize_t  h5_align;      /* HDF5 object alignment                */
+    hsize_t  h5_thresh;     /* HDF5 object alignment threshold      */
+    int      h5_use_chunks; /* Make HDF5 dataset chunked            */
+    int      h5_write_only; /* Perform the write tests only         */
+    int      verify;        /* Verify data correctness              */
+} parameters;
+
+typedef struct results_ {
+    herr_t     ret_code;
+    io_time_t *timers;
+} results;
+
+#ifndef SUCCESS
+#define SUCCESS 0
+#endif /* !SUCCESS */
+
+#ifndef FAIL
+#define FAIL -1
+#endif /* !FAIL */
+
+extern FILE *     output;              /* output file                          */
+extern io_time_t *timer_g;             /* timer: global for stub functions     */
+extern int        comm_world_rank_g;   /* my rank in MPI_COMM_RANK             */
+extern int        comm_world_nprocs_g; /* num. of processes of MPI_COMM_WORLD  */
+extern MPI_Comm   pio_comm_g;          /* Communicator to run the PIO          */
+extern int        pio_mpi_rank_g;      /* MPI rank of pio_comm_g               */
+extern int        pio_mpi_nprocs_g;    /* number of processes of pio_comm_g    */
+extern int        pio_debug_level;     /* The debug level:
+                                        *   0 - Off
+                                        *   1 - Minimal
+                                        *   2 - Some more
+                                        *   3 - Maximal
+                                        *   4 - Even More Debugging (timer stuff)
+                                        */
+
+#define HDprint_rank(f)      /* print rank in MPI_COMM_WORLD */ HDfprintf(f, "%d: ", comm_world_rank_g);
+#define HDprint_size(f)      /* print size of MPI_COMM_WORLD */ HDfprintf(f, "%d", comm_world_nprocs_g);
+#define HDprint_rank_size(f) /* print rank/size of MPI_COMM_WORLD */                                         \
+    HDfprintf(f, "%d/%d: ", comm_world_rank_g, comm_world_nprocs_g);
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+extern results do_pio(parameters param);
+
+#ifdef __cplusplus
+}
+#endif /* __cplusplus */
+
+#endif /* PIO_PERF_H */