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authorAllen Byrne <byrn@hdfgroup.org>2020-10-01 14:04:36 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2020-10-01 14:04:36 (GMT)
commitf1ba03cea5b82699a984c80bd2deac14fdc8df18 (patch)
treeebe777c3e0b83f4c4cec9212731da9ebe0a0cfd3 /tools/src/h5stat
parent10343c197906415388f2a4c8d292e21d25cf7381 (diff)
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Source formatted
Diffstat (limited to 'tools/src/h5stat')
-rw-r--r--tools/src/h5stat/h5stat.c1109
1 files changed, 543 insertions, 566 deletions
diff --git a/tools/src/h5stat/h5stat.c b/tools/src/h5stat/h5stat.c
index ec4b5ab..f834706 100644
--- a/tools/src/h5stat/h5stat.c
+++ b/tools/src/h5stat/h5stat.c
@@ -11,7 +11,7 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-#include "H5private.h" /* Generic Functions */
+#include "H5private.h" /* Generic Functions */
#include "h5tools.h"
#include "h5tools_utils.h"
#include "h5tools_ref.h"
@@ -24,100 +24,98 @@
/* Parameters to control statistics gathered */
/* Default threshold for small groups/datasets/attributes */
-#define DEF_SIZE_SMALL_GROUPS 10
-#define DEF_SIZE_SMALL_DSETS 10
-#define DEF_SIZE_SMALL_ATTRS 10
+#define DEF_SIZE_SMALL_GROUPS 10
+#define DEF_SIZE_SMALL_DSETS 10
+#define DEF_SIZE_SMALL_ATTRS 10
-#define SIZE_SMALL_SECTS 10
+#define SIZE_SMALL_SECTS 10
-#define H5_NFILTERS_IMPL 8 /* Number of currently implemented filters + one to
- accommodate for user-define filters + one
- to accomodate datasets whithout any filters */
+#define H5_NFILTERS_IMPL \
+ 8 /* Number of currently implemented filters + one to \
+ accommodate for user-define filters + one \
+ to accomodate datasets whithout any filters */
/* File space management strategies: see H5Fpublic.h for declarations */
-const char *FS_STRATEGY_NAME[] = {
- "H5F_FSPACE_STRATEGY_FSM_AGGR",
- "H5F_FSPACE_STRATEGY_PAGE",
- "H5F_FSPACE_STRATEGY_AGGR",
- "H5F_FSPACE_STRATEGY_NONE",
- "unknown",
- NULL
-};
+const char *FS_STRATEGY_NAME[] = {"H5F_FSPACE_STRATEGY_FSM_AGGR",
+ "H5F_FSPACE_STRATEGY_PAGE",
+ "H5F_FSPACE_STRATEGY_AGGR",
+ "H5F_FSPACE_STRATEGY_NONE",
+ "unknown",
+ NULL};
/* Datatype statistics for datasets */
typedef struct dtype_info_t {
- hid_t tid; /* ID of datatype */
- unsigned long count; /* Number of types found */
- unsigned long named; /* Number of types that are named */
+ hid_t tid; /* ID of datatype */
+ unsigned long count; /* Number of types found */
+ unsigned long named; /* Number of types that are named */
} dtype_info_t;
typedef struct ohdr_info_t {
- hsize_t total_size; /* Total size of object headers */
- hsize_t free_size; /* Total free space in object headers */
+ hsize_t total_size; /* Total size of object headers */
+ hsize_t free_size; /* Total free space in object headers */
} ohdr_info_t;
/* Info to pass to the iteration functions */
typedef struct iter_t {
- hid_t fid; /* File ID */
- hsize_t filesize; /* Size of the file */
- unsigned long uniq_groups; /* Number of unique groups */
- unsigned long uniq_dsets; /* Number of unique datasets */
- unsigned long uniq_dtypes; /* Number of unique named datatypes */
- unsigned long uniq_links; /* Number of unique links */
- unsigned long uniq_others; /* Number of other unique objects */
-
- unsigned long max_links; /* Maximum # of links to an object */
- hsize_t max_fanout; /* Maximum fanout from a group */
- unsigned long *num_small_groups; /* Size of small groups tracked */
- unsigned group_nbins; /* Number of bins for group counts */
- unsigned long *group_bins; /* Pointer to array of bins for group counts */
- ohdr_info_t group_ohdr_info; /* Object header information for groups */
-
- hsize_t max_attrs; /* Maximum attributes from a group */
- unsigned long *num_small_attrs; /* Size of small attributes tracked */
- unsigned attr_nbins; /* Number of bins for attribute counts */
- unsigned long *attr_bins; /* Pointer to array of bins for attribute counts */
-
- unsigned max_dset_rank; /* Maximum rank of dataset */
- unsigned long dset_rank_count[H5S_MAX_RANK]; /* Number of datasets of each rank */
- hsize_t max_dset_dims; /* Maximum dimension size of dataset */
- unsigned long *small_dset_dims; /* Size of dimensions of small datasets tracked */
- unsigned long dset_layouts[H5D_NLAYOUTS]; /* Type of storage for each dataset */
- unsigned long dset_comptype[H5_NFILTERS_IMPL]; /* Number of currently implemented filters */
- unsigned long dset_ntypes; /* Number of diff. dataset datatypes found */
- dtype_info_t *dset_type_info; /* Pointer to dataset datatype information found */
- unsigned dset_dim_nbins; /* Number of bins for dataset dimensions */
- unsigned long *dset_dim_bins; /* Pointer to array of bins for dataset dimensions */
- ohdr_info_t dset_ohdr_info; /* Object header information for datasets */
- hsize_t dset_storage_size; /* Size of raw data for datasets */
- hsize_t dset_external_storage_size; /* Size of raw data for datasets with external storage */
- ohdr_info_t dtype_ohdr_info; /* Object header information for datatypes */
- hsize_t groups_btree_storage_size; /* btree size for group */
- hsize_t groups_heap_storage_size; /* heap size for group */
- hsize_t attrs_btree_storage_size; /* btree size for attributes (1.8) */
- hsize_t attrs_heap_storage_size; /* fractal heap size for attributes (1.8) */
- hsize_t SM_hdr_storage_size; /* header size for SOHM table (1.8) */
- hsize_t SM_index_storage_size; /* index (btree & list) size for SOHM table (1.8) */
- hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */
- hsize_t super_size; /* superblock size */
- hsize_t super_ext_size; /* superblock extension size */
- hsize_t ublk_size; /* user block size (if exists) */
- H5F_fspace_strategy_t fs_strategy; /* File space management strategy */
- hbool_t fs_persist; /* Free-space persist or not */
- hsize_t fs_threshold; /* Free-space section threshold */
- hsize_t fsp_size; /* File space page size */
- hsize_t free_space; /* Amount of freespace in the file */
- hsize_t free_hdr; /* Size of free space manager metadata in the file */
- unsigned long num_small_sects[SIZE_SMALL_SECTS]; /* Size of small free-space sections */
- unsigned sect_nbins; /* Number of bins for free-space section sizes */
- unsigned long *sect_bins; /* Pointer to array of bins for free-space section sizes */
- hsize_t datasets_index_storage_size;/* meta size for chunked dataset's indexing type */
- hsize_t datasets_heap_storage_size; /* heap size for dataset with external storage */
- unsigned long nexternal; /* Number of external files for a dataset */
- int local; /* Flag to indicate iteration over the object*/
+ hid_t fid; /* File ID */
+ hsize_t filesize; /* Size of the file */
+ unsigned long uniq_groups; /* Number of unique groups */
+ unsigned long uniq_dsets; /* Number of unique datasets */
+ unsigned long uniq_dtypes; /* Number of unique named datatypes */
+ unsigned long uniq_links; /* Number of unique links */
+ unsigned long uniq_others; /* Number of other unique objects */
+
+ unsigned long max_links; /* Maximum # of links to an object */
+ hsize_t max_fanout; /* Maximum fanout from a group */
+ unsigned long *num_small_groups; /* Size of small groups tracked */
+ unsigned group_nbins; /* Number of bins for group counts */
+ unsigned long *group_bins; /* Pointer to array of bins for group counts */
+ ohdr_info_t group_ohdr_info; /* Object header information for groups */
+
+ hsize_t max_attrs; /* Maximum attributes from a group */
+ unsigned long *num_small_attrs; /* Size of small attributes tracked */
+ unsigned attr_nbins; /* Number of bins for attribute counts */
+ unsigned long *attr_bins; /* Pointer to array of bins for attribute counts */
+
+ unsigned max_dset_rank; /* Maximum rank of dataset */
+ unsigned long dset_rank_count[H5S_MAX_RANK]; /* Number of datasets of each rank */
+ hsize_t max_dset_dims; /* Maximum dimension size of dataset */
+ unsigned long *small_dset_dims; /* Size of dimensions of small datasets tracked */
+ unsigned long dset_layouts[H5D_NLAYOUTS]; /* Type of storage for each dataset */
+ unsigned long dset_comptype[H5_NFILTERS_IMPL]; /* Number of currently implemented filters */
+ unsigned long dset_ntypes; /* Number of diff. dataset datatypes found */
+ dtype_info_t * dset_type_info; /* Pointer to dataset datatype information found */
+ unsigned dset_dim_nbins; /* Number of bins for dataset dimensions */
+ unsigned long *dset_dim_bins; /* Pointer to array of bins for dataset dimensions */
+ ohdr_info_t dset_ohdr_info; /* Object header information for datasets */
+ hsize_t dset_storage_size; /* Size of raw data for datasets */
+ hsize_t dset_external_storage_size; /* Size of raw data for datasets with external storage */
+ ohdr_info_t dtype_ohdr_info; /* Object header information for datatypes */
+ hsize_t groups_btree_storage_size; /* btree size for group */
+ hsize_t groups_heap_storage_size; /* heap size for group */
+ hsize_t attrs_btree_storage_size; /* btree size for attributes (1.8) */
+ hsize_t attrs_heap_storage_size; /* fractal heap size for attributes (1.8) */
+ hsize_t SM_hdr_storage_size; /* header size for SOHM table (1.8) */
+ hsize_t SM_index_storage_size; /* index (btree & list) size for SOHM table (1.8) */
+ hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */
+ hsize_t super_size; /* superblock size */
+ hsize_t super_ext_size; /* superblock extension size */
+ hsize_t ublk_size; /* user block size (if exists) */
+ H5F_fspace_strategy_t fs_strategy; /* File space management strategy */
+ hbool_t fs_persist; /* Free-space persist or not */
+ hsize_t fs_threshold; /* Free-space section threshold */
+ hsize_t fsp_size; /* File space page size */
+ hsize_t free_space; /* Amount of freespace in the file */
+ hsize_t free_hdr; /* Size of free space manager metadata in the file */
+ unsigned long num_small_sects[SIZE_SMALL_SECTS]; /* Size of small free-space sections */
+ unsigned sect_nbins; /* Number of bins for free-space section sizes */
+ unsigned long * sect_bins; /* Pointer to array of bins for free-space section sizes */
+ hsize_t datasets_index_storage_size; /* meta size for chunked dataset's indexing type */
+ hsize_t datasets_heap_storage_size; /* heap size for dataset with external storage */
+ unsigned long nexternal; /* Number of external files for a dataset */
+ int local; /* Flag to indicate iteration over the object*/
} iter_t;
-
static const char *drivername = NULL;
#ifdef H5_HAVE_ROS3_VFD
@@ -143,27 +141,27 @@ static H5FD_hdfs_fapl_t hdfs_fa = {
};
#endif /* H5_HAVE_LIBHDFS */
-static int display_all = TRUE;
+static int display_all = TRUE;
/* Enable the printing of selected statistics */
-static int display_file = FALSE; /* display file information */
-static int display_group = FALSE; /* display groups information */
-static int display_dset = FALSE; /* display datasets information */
-static int display_dset_dtype_meta = FALSE; /* display datasets' datatype information */
-static int display_attr = FALSE; /* display attributes information */
-static int display_free_sections = FALSE; /* display free space information */
-static int display_summary = FALSE; /* display summary of file space information */
+static int display_file = FALSE; /* display file information */
+static int display_group = FALSE; /* display groups information */
+static int display_dset = FALSE; /* display datasets information */
+static int display_dset_dtype_meta = FALSE; /* display datasets' datatype information */
+static int display_attr = FALSE; /* display attributes information */
+static int display_free_sections = FALSE; /* display free space information */
+static int display_summary = FALSE; /* display summary of file space information */
-static int display_file_metadata = FALSE; /* display file space info for file's metadata */
-static int display_group_metadata = FALSE; /* display file space info for groups' metadata */
-static int display_dset_metadata = FALSE; /* display file space info for datasets' metadata */
+static int display_file_metadata = FALSE; /* display file space info for file's metadata */
+static int display_group_metadata = FALSE; /* display file space info for groups' metadata */
+static int display_dset_metadata = FALSE; /* display file space info for datasets' metadata */
-static int display_object = FALSE; /* not implemented yet */
+static int display_object = FALSE; /* not implemented yet */
/* Initialize threshold for small groups/datasets/attributes */
-static int sgroups_threshold = DEF_SIZE_SMALL_GROUPS;
-static int sdsets_threshold = DEF_SIZE_SMALL_DSETS;
-static int sattrs_threshold = DEF_SIZE_SMALL_ATTRS;
+static int sgroups_threshold = DEF_SIZE_SMALL_GROUPS;
+static int sdsets_threshold = DEF_SIZE_SMALL_DSETS;
+static int sattrs_threshold = DEF_SIZE_SMALL_ATTRS;
/* a structure for handling the order command-line parameters come in */
struct handler_t {
@@ -171,120 +169,116 @@ struct handler_t {
char **obj;
};
-static const char *s_opts ="Aa:Ddm:EFfhGgl:sSTO:Vw:H:";
+static const char *s_opts = "Aa:Ddm:EFfhGgl:sSTO:Vw:H:";
/* e.g. "filemetadata" has to precede "file"; "groupmetadata" has to precede "group" etc. */
-static struct long_options l_opts[] = {
- {"help", no_arg, 'h'},
- {"hel", no_arg, 'h'},
- {"he", no_arg, 'h'},
- {"filemetadata", no_arg, 'F'},
- {"filemetadat", no_arg, 'F'},
- {"filemetada", no_arg, 'F'},
- {"filemetad", no_arg, 'F'},
- {"filemeta", no_arg, 'F'},
- {"filemet", no_arg, 'F'},
- {"fileme", no_arg, 'F'},
- {"filem", no_arg, 'F'},
- {"file", no_arg, 'f'},
- {"fil", no_arg, 'f'},
- {"fi", no_arg, 'f'},
- {"groupmetadata", no_arg, 'G'},
- {"groupmetadat", no_arg, 'G'},
- {"groupmetada", no_arg, 'G'},
- {"groupmetad", no_arg, 'G'},
- {"groupmeta", no_arg, 'G'},
- {"groupmet", no_arg, 'G'},
- {"groupme", no_arg, 'G'},
- {"groupm", no_arg, 'G'},
- {"group", no_arg, 'g'},
- {"grou", no_arg, 'g'},
- {"gro", no_arg, 'g'},
- {"gr", no_arg, 'g'},
- { "links", require_arg, 'l' },
- { "link", require_arg, 'l' },
- { "lin", require_arg, 'l' },
- { "li", require_arg, 'l' },
- {"dsetmetadata", no_arg, 'D'},
- {"dsetmetadat", no_arg, 'D'},
- {"dsetmetada", no_arg, 'D'},
- {"dsetmetad", no_arg, 'D'},
- {"dsetmeta", no_arg, 'D'},
- {"dsetmet", no_arg, 'D'},
- {"dsetme", no_arg, 'D'},
- {"dsetm", no_arg, 'D'},
- {"dset", no_arg, 'd'},
- {"dse", no_arg, 'd'},
- {"ds", no_arg, 'd'},
- {"dims", require_arg, 'm'},
- {"dim", require_arg, 'm'},
- {"di", require_arg, 'm'},
- {"dtypemetadata", no_arg, 'T'},
- {"dtypemetadat", no_arg, 'T'},
- {"dtypemetada", no_arg, 'T'},
- {"dtypemetad", no_arg, 'T'},
- {"dtypemeta", no_arg, 'T'},
- {"dtypemet", no_arg, 'T'},
- {"dtypeme", no_arg, 'T'},
- {"dtypem", no_arg, 'T'},
- {"dtype", no_arg, 'T'},
- {"dtyp", no_arg, 'T'},
- {"dty", no_arg, 'T'},
- {"dt", no_arg, 'T'},
- { "object", require_arg, 'O' },
- { "objec", require_arg, 'O' },
- { "obje", require_arg, 'O' },
- { "obj", require_arg, 'O' },
- { "ob", require_arg, 'O' },
- { "version", no_arg, 'V' },
- { "versio", no_arg, 'V' },
- { "versi", no_arg, 'V' },
- { "vers", no_arg, 'V' },
- { "ver", no_arg, 'V' },
- { "ve", no_arg, 'V' },
- { "attribute", no_arg, 'A' },
- { "attribut", no_arg, 'A' },
- { "attribu", no_arg, 'A' },
- { "attrib", no_arg, 'A' },
- { "attri", no_arg, 'A' },
- { "attr", no_arg, 'A' },
- { "att", no_arg, 'A' },
- { "at", no_arg, 'A' },
- { "enable-error-stack", no_arg, 'E' },
- { "numattrs", require_arg, 'a' },
- { "numattr", require_arg, 'a' },
- { "numatt", require_arg, 'a' },
- { "numat", require_arg, 'a' },
- { "numa", require_arg, 'a' },
- { "num", require_arg, 'a' },
- { "nu", require_arg, 'a' },
- { "freespace", no_arg, 's' },
- { "freespac", no_arg, 's' },
- { "freespa", no_arg, 's' },
- { "freesp", no_arg, 's' },
- { "frees", no_arg, 's' },
- { "free", no_arg, 's' },
- { "fre", no_arg, 's' },
- { "fr", no_arg, 's' },
- { "summary", no_arg, 'S' },
- { "summar", no_arg, 'S' },
- { "summa", no_arg, 'S' },
- { "summ", no_arg, 'S' },
- { "sum", no_arg, 'S' },
- { "su", no_arg, 'S' },
- { "s3-cred", require_arg, 'w' },
- { "hdfs-attrs", require_arg, 'H' },
- { NULL, 0, '\0' }
-};
+static struct long_options l_opts[] = {{"help", no_arg, 'h'},
+ {"hel", no_arg, 'h'},
+ {"he", no_arg, 'h'},
+ {"filemetadata", no_arg, 'F'},
+ {"filemetadat", no_arg, 'F'},
+ {"filemetada", no_arg, 'F'},
+ {"filemetad", no_arg, 'F'},
+ {"filemeta", no_arg, 'F'},
+ {"filemet", no_arg, 'F'},
+ {"fileme", no_arg, 'F'},
+ {"filem", no_arg, 'F'},
+ {"file", no_arg, 'f'},
+ {"fil", no_arg, 'f'},
+ {"fi", no_arg, 'f'},
+ {"groupmetadata", no_arg, 'G'},
+ {"groupmetadat", no_arg, 'G'},
+ {"groupmetada", no_arg, 'G'},
+ {"groupmetad", no_arg, 'G'},
+ {"groupmeta", no_arg, 'G'},
+ {"groupmet", no_arg, 'G'},
+ {"groupme", no_arg, 'G'},
+ {"groupm", no_arg, 'G'},
+ {"group", no_arg, 'g'},
+ {"grou", no_arg, 'g'},
+ {"gro", no_arg, 'g'},
+ {"gr", no_arg, 'g'},
+ {"links", require_arg, 'l'},
+ {"link", require_arg, 'l'},
+ {"lin", require_arg, 'l'},
+ {"li", require_arg, 'l'},
+ {"dsetmetadata", no_arg, 'D'},
+ {"dsetmetadat", no_arg, 'D'},
+ {"dsetmetada", no_arg, 'D'},
+ {"dsetmetad", no_arg, 'D'},
+ {"dsetmeta", no_arg, 'D'},
+ {"dsetmet", no_arg, 'D'},
+ {"dsetme", no_arg, 'D'},
+ {"dsetm", no_arg, 'D'},
+ {"dset", no_arg, 'd'},
+ {"dse", no_arg, 'd'},
+ {"ds", no_arg, 'd'},
+ {"dims", require_arg, 'm'},
+ {"dim", require_arg, 'm'},
+ {"di", require_arg, 'm'},
+ {"dtypemetadata", no_arg, 'T'},
+ {"dtypemetadat", no_arg, 'T'},
+ {"dtypemetada", no_arg, 'T'},
+ {"dtypemetad", no_arg, 'T'},
+ {"dtypemeta", no_arg, 'T'},
+ {"dtypemet", no_arg, 'T'},
+ {"dtypeme", no_arg, 'T'},
+ {"dtypem", no_arg, 'T'},
+ {"dtype", no_arg, 'T'},
+ {"dtyp", no_arg, 'T'},
+ {"dty", no_arg, 'T'},
+ {"dt", no_arg, 'T'},
+ {"object", require_arg, 'O'},
+ {"objec", require_arg, 'O'},
+ {"obje", require_arg, 'O'},
+ {"obj", require_arg, 'O'},
+ {"ob", require_arg, 'O'},
+ {"version", no_arg, 'V'},
+ {"versio", no_arg, 'V'},
+ {"versi", no_arg, 'V'},
+ {"vers", no_arg, 'V'},
+ {"ver", no_arg, 'V'},
+ {"ve", no_arg, 'V'},
+ {"attribute", no_arg, 'A'},
+ {"attribut", no_arg, 'A'},
+ {"attribu", no_arg, 'A'},
+ {"attrib", no_arg, 'A'},
+ {"attri", no_arg, 'A'},
+ {"attr", no_arg, 'A'},
+ {"att", no_arg, 'A'},
+ {"at", no_arg, 'A'},
+ {"enable-error-stack", no_arg, 'E'},
+ {"numattrs", require_arg, 'a'},
+ {"numattr", require_arg, 'a'},
+ {"numatt", require_arg, 'a'},
+ {"numat", require_arg, 'a'},
+ {"numa", require_arg, 'a'},
+ {"num", require_arg, 'a'},
+ {"nu", require_arg, 'a'},
+ {"freespace", no_arg, 's'},
+ {"freespac", no_arg, 's'},
+ {"freespa", no_arg, 's'},
+ {"freesp", no_arg, 's'},
+ {"frees", no_arg, 's'},
+ {"free", no_arg, 's'},
+ {"fre", no_arg, 's'},
+ {"fr", no_arg, 's'},
+ {"summary", no_arg, 'S'},
+ {"summar", no_arg, 'S'},
+ {"summa", no_arg, 'S'},
+ {"summ", no_arg, 'S'},
+ {"sum", no_arg, 'S'},
+ {"su", no_arg, 'S'},
+ {"s3-cred", require_arg, 'w'},
+ {"hdfs-attrs", require_arg, 'H'},
+ {NULL, 0, '\0'}};
static void
leave(int ret)
{
- h5tools_close();
- HDexit(ret);
+ h5tools_close();
+ HDexit(ret);
}
-
-
/*-------------------------------------------------------------------------
* Function: usage
*
@@ -294,47 +288,49 @@ leave(int ret)
*
*-------------------------------------------------------------------------
*/
-static void usage(const char *prog)
+static void
+usage(const char *prog)
{
- HDfflush(stdout);
- HDfprintf(stdout, "Usage: %s [OPTIONS] file\n", prog);
- HDfprintf(stdout, "\n");
- HDfprintf(stdout, " OPTIONS\n");
- HDfprintf(stdout, " -h, --help Print a usage message and exit\n");
- HDfprintf(stdout, " -V, --version Print version number and exit\n");
- HDfprintf(stdout, " -f, --file Print file information\n");
- HDfprintf(stdout, " -F, --filemetadata Print file space information for file's metadata\n");
- HDfprintf(stdout, " -g, --group Print group information\n");
- HDfprintf(stdout, " -l N, --links=N Set the threshold for the # of links when printing\n");
- HDfprintf(stdout, " information for small groups. N is an integer greater\n");
- HDfprintf(stdout, " than 0. The default threshold is 10.\n");
- HDfprintf(stdout, " -G, --groupmetadata Print file space information for groups' metadata\n");
- HDfprintf(stdout, " -d, --dset Print dataset information\n");
- HDfprintf(stdout, " -m N, --dims=N Set the threshold for the dimension sizes when printing\n");
- HDfprintf(stdout, " information for small datasets. N is an integer greater\n");
- HDfprintf(stdout, " than 0. The default threshold is 10.\n");
- HDfprintf(stdout, " -D, --dsetmetadata Print file space information for datasets' metadata\n");
- HDfprintf(stdout, " -T, --dtypemetadata Print datasets' datatype information\n");
- HDfprintf(stdout, " -A, --attribute Print attribute information\n");
- HDfprintf(stdout, " -a N, --numattrs=N Set the threshold for the # of attributes when printing\n");
- HDfprintf(stdout, " information for small # of attributes. N is an integer greater\n");
- HDfprintf(stdout, " than 0. The default threshold is 10.\n");
- HDfprintf(stdout, " -s, --freespace Print free space information\n");
- HDfprintf(stdout, " -S, --summary Print summary of file space information\n");
- HDfprintf(stdout, " --enable-error-stack Prints messages from the HDF5 error stack as they occur\n");
- HDfprintf(stdout, " --s3-cred=<cred> Access file on S3, using provided credential\n");
- HDfprintf(stdout, " <cred> :: (region,id,key)\n");
- HDfprintf(stdout, " If <cred> == \"(,,)\", no authentication is used.\n");
- HDfprintf(stdout, " --hdfs-attrs=<attrs> Access a file on HDFS with given configuration\n");
- HDfprintf(stdout, " attributes.\n");
- HDfprintf(stdout, " <attrs> :: (<namenode name>,<namenode port>,\n");
- HDfprintf(stdout, " <kerberos cache path>,<username>,\n");
- HDfprintf(stdout, " <buffer size>)\n");
- HDfprintf(stdout, " If an attribute is empty, a default value will be\n");
- HDfprintf(stdout, " used.\n");
+ HDfflush(stdout);
+ HDfprintf(stdout, "Usage: %s [OPTIONS] file\n", prog);
+ HDfprintf(stdout, "\n");
+ HDfprintf(stdout, " OPTIONS\n");
+ HDfprintf(stdout, " -h, --help Print a usage message and exit\n");
+ HDfprintf(stdout, " -V, --version Print version number and exit\n");
+ HDfprintf(stdout, " -f, --file Print file information\n");
+ HDfprintf(stdout, " -F, --filemetadata Print file space information for file's metadata\n");
+ HDfprintf(stdout, " -g, --group Print group information\n");
+ HDfprintf(stdout, " -l N, --links=N Set the threshold for the # of links when printing\n");
+ HDfprintf(stdout, " information for small groups. N is an integer greater\n");
+ HDfprintf(stdout, " than 0. The default threshold is 10.\n");
+ HDfprintf(stdout, " -G, --groupmetadata Print file space information for groups' metadata\n");
+ HDfprintf(stdout, " -d, --dset Print dataset information\n");
+ HDfprintf(stdout, " -m N, --dims=N Set the threshold for the dimension sizes when printing\n");
+ HDfprintf(stdout,
+ " information for small datasets. N is an integer greater\n");
+ HDfprintf(stdout, " than 0. The default threshold is 10.\n");
+ HDfprintf(stdout, " -D, --dsetmetadata Print file space information for datasets' metadata\n");
+ HDfprintf(stdout, " -T, --dtypemetadata Print datasets' datatype information\n");
+ HDfprintf(stdout, " -A, --attribute Print attribute information\n");
+ HDfprintf(stdout, " -a N, --numattrs=N Set the threshold for the # of attributes when printing\n");
+ HDfprintf(stdout,
+ " information for small # of attributes. N is an integer greater\n");
+ HDfprintf(stdout, " than 0. The default threshold is 10.\n");
+ HDfprintf(stdout, " -s, --freespace Print free space information\n");
+ HDfprintf(stdout, " -S, --summary Print summary of file space information\n");
+ HDfprintf(stdout, " --enable-error-stack Prints messages from the HDF5 error stack as they occur\n");
+ HDfprintf(stdout, " --s3-cred=<cred> Access file on S3, using provided credential\n");
+ HDfprintf(stdout, " <cred> :: (region,id,key)\n");
+ HDfprintf(stdout, " If <cred> == \"(,,)\", no authentication is used.\n");
+ HDfprintf(stdout, " --hdfs-attrs=<attrs> Access a file on HDFS with given configuration\n");
+ HDfprintf(stdout, " attributes.\n");
+ HDfprintf(stdout, " <attrs> :: (<namenode name>,<namenode port>,\n");
+ HDfprintf(stdout, " <kerberos cache path>,<username>,\n");
+ HDfprintf(stdout, " <buffer size>)\n");
+ HDfprintf(stdout, " If an attribute is empty, a default value will be\n");
+ HDfprintf(stdout, " used.\n");
}
-
/*-------------------------------------------------------------------------
* Function: ceil_log10
*
@@ -351,9 +347,9 @@ H5_ATTR_CONST static unsigned
ceil_log10(unsigned long x)
{
unsigned long pow10 = 1;
- unsigned ret = 0;
+ unsigned ret = 0;
- while(x >= pow10) {
+ while (x >= pow10) {
pow10 *= 10;
ret++;
} /* end while */
@@ -361,7 +357,6 @@ ceil_log10(unsigned long x)
return ret;
} /* ceil_log10() */
-
/*-------------------------------------------------------------------------
* Function: attribute_stats
*
@@ -379,39 +374,38 @@ ceil_log10(unsigned long x)
static herr_t
attribute_stats(iter_t *iter, const H5O_info2_t *oi, const H5O_native_info_t *native_oi)
{
- unsigned bin; /* "bin" the number of objects falls in */
+ unsigned bin; /* "bin" the number of objects falls in */
/* Update dataset & attribute metadata info */
iter->attrs_btree_storage_size += native_oi->meta_size.attr.index_size;
iter->attrs_heap_storage_size += native_oi->meta_size.attr.heap_size;
/* Update small # of attribute count & limits */
- if(oi->num_attrs <= (hsize_t)sattrs_threshold)
+ if (oi->num_attrs <= (hsize_t)sattrs_threshold)
(iter->num_small_attrs[(size_t)oi->num_attrs])++;
- if(oi->num_attrs > iter->max_attrs)
+ if (oi->num_attrs > iter->max_attrs)
iter->max_attrs = oi->num_attrs;
/* Add attribute count to proper bin */
bin = ceil_log10((unsigned long)oi->num_attrs);
- if((bin + 1) > iter->attr_nbins) {
+ if ((bin + 1) > iter->attr_nbins) {
iter->attr_bins = (unsigned long *)HDrealloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long));
HDassert(iter->attr_bins);
/* Initialize counts for intermediate bins */
- while(iter->attr_nbins < bin)
+ while (iter->attr_nbins < bin)
iter->attr_bins[iter->attr_nbins++] = 0;
iter->attr_nbins++;
/* Initialize count for new bin */
iter->attr_bins[bin] = 1;
- } /* end if */
- else
- (iter->attr_bins[bin])++;
+ } /* end if */
+ else
+ (iter->attr_bins[bin])++;
- return 0;
+ return 0;
} /* end attribute_stats() */
-
/*-------------------------------------------------------------------------
* Function: group_stats
*
@@ -440,9 +434,9 @@ attribute_stats(iter_t *iter, const H5O_info2_t *oi, const H5O_native_info_t *na
static herr_t
group_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_native_info_t *native_oi)
{
- H5G_info_t ginfo; /* Group information */
- unsigned bin; /* "bin" the number of objects falls in */
- herr_t ret_value = SUCCEED;
+ H5G_info_t ginfo; /* Group information */
+ unsigned bin; /* "bin" the number of objects falls in */
+ herr_t ret_value = SUCCEED;
/* Gather statistics about this type of object */
iter->uniq_groups++;
@@ -452,26 +446,27 @@ group_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_nat
iter->group_ohdr_info.free_size += native_oi->hdr.space.free;
/* Get group information */
- if((ret_value = H5Gget_info_by_name(iter->fid, name, &ginfo, H5P_DEFAULT)) < 0)
+ if ((ret_value = H5Gget_info_by_name(iter->fid, name, &ginfo, H5P_DEFAULT)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Gget_info_by_name() failed");
/* Update link stats */
/* Collect statistics for small groups */
- if(ginfo.nlinks < (hsize_t)sgroups_threshold)
+ if (ginfo.nlinks < (hsize_t)sgroups_threshold)
(iter->num_small_groups[(size_t)ginfo.nlinks])++;
/* Determine maximum link count */
- if(ginfo.nlinks > iter->max_fanout)
+ if (ginfo.nlinks > iter->max_fanout)
iter->max_fanout = ginfo.nlinks;
/* Add group count to proper bin */
bin = ceil_log10((unsigned long)ginfo.nlinks);
- if((bin + 1) > iter->group_nbins) {
+ if ((bin + 1) > iter->group_nbins) {
/* Allocate more storage for info about dataset's datatype */
- if((iter->group_bins = (unsigned long *)HDrealloc(iter->group_bins, (bin + 1) * sizeof(unsigned long))) == NULL)
+ if ((iter->group_bins =
+ (unsigned long *)HDrealloc(iter->group_bins, (bin + 1) * sizeof(unsigned long))) == NULL)
H5TOOLS_GOTO_ERROR(FAIL, "H5Drealloc() failed");
/* Initialize counts for intermediate bins */
- while(iter->group_nbins < bin)
+ while (iter->group_nbins < bin)
iter->group_bins[iter->group_nbins++] = 0;
iter->group_nbins++;
@@ -486,14 +481,13 @@ group_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_nat
iter->groups_heap_storage_size += native_oi->meta_size.obj.heap_size;
/* Update attribute metadata info */
- if((ret_value = attribute_stats(iter, oi, native_oi)) < 0)
+ if ((ret_value = attribute_stats(iter, oi, native_oi)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "attribute_stats failed");
done:
return ret_value;
} /* end group_stats() */
-
/*-------------------------------------------------------------------------
* Function: dataset_stats
*
@@ -510,22 +504,22 @@ done:
static herr_t
dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_native_info_t *native_oi)
{
- unsigned bin; /* "bin" the number of objects falls in */
- hid_t did; /* Dataset ID */
- hid_t sid; /* Dataspace ID */
- hid_t tid; /* Datatype ID */
- hid_t dcpl; /* Dataset creation property list ID */
- hsize_t dims[H5S_MAX_RANK]; /* Dimensions of dataset */
- H5D_layout_t lout; /* Layout of dataset */
- unsigned type_found; /* Whether the dataset's datatype was */
- /* already found */
- int ndims; /* Number of dimensions of dataset */
- hsize_t storage; /* Size of dataset storage */
- unsigned u; /* Local index variable */
- int num_ext; /* Number of external files for a dataset */
- int nfltr; /* Number of filters for a dataset */
- H5Z_filter_t fltr; /* Filter identifier */
- herr_t ret_value = SUCCEED;
+ unsigned bin; /* "bin" the number of objects falls in */
+ hid_t did; /* Dataset ID */
+ hid_t sid; /* Dataspace ID */
+ hid_t tid; /* Datatype ID */
+ hid_t dcpl; /* Dataset creation property list ID */
+ hsize_t dims[H5S_MAX_RANK]; /* Dimensions of dataset */
+ H5D_layout_t lout; /* Layout of dataset */
+ unsigned type_found; /* Whether the dataset's datatype was */
+ /* already found */
+ int ndims; /* Number of dimensions of dataset */
+ hsize_t storage; /* Size of dataset storage */
+ unsigned u; /* Local index variable */
+ int num_ext; /* Number of external files for a dataset */
+ int nfltr; /* Number of filters for a dataset */
+ H5Z_filter_t fltr; /* Filter identifier */
+ herr_t ret_value = SUCCEED;
/* Gather statistics about this type of object */
iter->uniq_dsets++;
@@ -534,7 +528,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_n
iter->dset_ohdr_info.total_size += native_oi->hdr.space.total;
iter->dset_ohdr_info.free_size += native_oi->hdr.space.free;
- if((did = H5Dopen2(iter->fid, name, H5P_DEFAULT)) < 0)
+ if ((did = H5Dopen2(iter->fid, name, H5P_DEFAULT)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Dopen() failed");
/* Update dataset metadata info */
@@ -542,7 +536,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_n
iter->datasets_heap_storage_size += native_oi->meta_size.obj.heap_size;
/* Update attribute metadata info */
- if((ret_value = attribute_stats(iter, oi, native_oi)) < 0)
+ if ((ret_value = attribute_stats(iter, oi, native_oi)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "attribute_stats() failed");
/* Get storage info */
@@ -550,26 +544,26 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_n
storage = H5Dget_storage_size(did);
/* Gather layout statistics */
- if((dcpl = H5Dget_create_plist(did)) < 0)
+ if ((dcpl = H5Dget_create_plist(did)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Dget_create_plist() failed");
- if((lout = H5Pget_layout(dcpl)) < 0)
+ if ((lout = H5Pget_layout(dcpl)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Pget_layout() failed");
/* Object header's total size for H5D_COMPACT layout includes raw data size */
/* "storage" also includes H5D_COMPACT raw data size */
- if(lout == H5D_COMPACT)
+ if (lout == H5D_COMPACT)
iter->dset_ohdr_info.total_size -= storage;
/* Track the layout type for dataset */
(iter->dset_layouts[lout])++;
/* Get the number of external files for the dataset */
- if((num_ext = H5Pget_external_count(dcpl)) < 0)
+ if ((num_ext = H5Pget_external_count(dcpl)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Pget_external_count() failed");
/* Accumulate raw data size accordingly */
- if(num_ext) {
+ if (num_ext) {
iter->nexternal += (unsigned long)num_ext;
iter->dset_external_storage_size += (unsigned long)storage;
}
@@ -577,37 +571,38 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_n
iter->dset_storage_size += storage;
/* Gather dataspace statistics */
- if((sid = H5Dget_space(did)) < 0)
+ if ((sid = H5Dget_space(did)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Sget_space() failed");
- if((ndims = H5Sget_simple_extent_dims(sid, dims, NULL)) < 0)
+ if ((ndims = H5Sget_simple_extent_dims(sid, dims, NULL)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Sget_simple_extent_dims() failed");
/* Check for larger rank of dataset */
- if((unsigned)ndims > iter->max_dset_rank)
+ if ((unsigned)ndims > iter->max_dset_rank)
iter->max_dset_rank = (unsigned)ndims;
/* Track the number of datasets with each rank */
(iter->dset_rank_count[ndims])++;
/* Only gather dim size statistics on 1-D datasets */
- if(ndims == 1) {
+ if (ndims == 1) {
/* Determine maximum dimension size */
- if(dims[0] > iter->max_dset_dims)
+ if (dims[0] > iter->max_dset_dims)
iter->max_dset_dims = dims[0];
/* Collect statistics for small datasets */
- if(dims[0] < (hsize_t)sdsets_threshold)
+ if (dims[0] < (hsize_t)sdsets_threshold)
(iter->small_dset_dims[(size_t)dims[0]])++;
/* Add dim count to proper bin */
bin = ceil_log10((unsigned long)dims[0]);
- if((bin + 1) > iter->dset_dim_nbins) {
+ if ((bin + 1) > iter->dset_dim_nbins) {
/* Allocate more storage for info about dataset's datatype */
- if((iter->dset_dim_bins = (unsigned long *)HDrealloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long))) == NULL)
+ if ((iter->dset_dim_bins = (unsigned long *)HDrealloc(iter->dset_dim_bins,
+ (bin + 1) * sizeof(unsigned long))) == NULL)
H5TOOLS_GOTO_ERROR(FAIL, "H5Drealloc() failed");
/* Initialize counts for intermediate bins */
- while(iter->dset_dim_nbins < bin)
+ while (iter->dset_dim_nbins < bin)
iter->dset_dim_bins[iter->dset_dim_nbins++] = 0;
iter->dset_dim_nbins++;
@@ -618,22 +613,22 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_n
(iter->dset_dim_bins[bin])++;
} /* end if */
- if(H5Sclose(sid) < 0)
+ if (H5Sclose(sid) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Sclose() failed");
/* Gather datatype statistics */
- if((tid = H5Dget_type(did)) < 0)
+ if ((tid = H5Dget_type(did)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Dget_type() failed");
type_found = FALSE;
- for(u = 0; u < iter->dset_ntypes; u++)
- if(H5Tequal(iter->dset_type_info[u].tid, tid) > 0) {
+ for (u = 0; u < iter->dset_ntypes; u++)
+ if (H5Tequal(iter->dset_type_info[u].tid, tid) > 0) {
type_found = TRUE;
break;
} /* end for */
- if(type_found)
- (iter->dset_type_info[u].count)++;
+ if (type_found)
+ (iter->dset_type_info[u].count)++;
else {
unsigned curr_ntype = (unsigned)iter->dset_ntypes;
@@ -641,11 +636,12 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_n
iter->dset_ntypes++;
/* Allocate more storage for info about dataset's datatype */
- if((iter->dset_type_info = (dtype_info_t *)HDrealloc(iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t))) == NULL)
+ if ((iter->dset_type_info = (dtype_info_t *)HDrealloc(
+ iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t))) == NULL)
H5TOOLS_GOTO_ERROR(FAIL, "H5Drealloc() failed");
/* Initialize information about datatype */
- if((iter->dset_type_info[curr_ntype].tid = H5Tcopy(tid)) < 0)
+ if ((iter->dset_type_info[curr_ntype].tid = H5Tcopy(tid)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Tcopy() failed");
iter->dset_type_info[curr_ntype].count = 1;
iter->dset_type_info[curr_ntype].named = 0;
@@ -655,37 +651,36 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info2_t *oi, const H5O_n
} /* end else */
/* Check if the datatype is a named datatype */
- if(H5Tcommitted(tid) > 0)
+ if (H5Tcommitted(tid) > 0)
(iter->dset_type_info[u].named)++;
- if(H5Tclose(tid) < 0)
+ if (H5Tclose(tid) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Tclose() failed");
/* Track different filters */
- if((nfltr = H5Pget_nfilters(dcpl)) >= 0) {
- if(nfltr == 0)
- iter->dset_comptype[0]++;
- for(u = 0; u < (unsigned)nfltr; u++) {
+ if ((nfltr = H5Pget_nfilters(dcpl)) >= 0) {
+ if (nfltr == 0)
+ iter->dset_comptype[0]++;
+ for (u = 0; u < (unsigned)nfltr; u++) {
fltr = H5Pget_filter2(dcpl, u, 0, 0, 0, 0, 0, NULL);
- if(fltr >= 0) {
- if(fltr < (H5_NFILTERS_IMPL - 1))
+ if (fltr >= 0) {
+ if (fltr < (H5_NFILTERS_IMPL - 1))
iter->dset_comptype[fltr]++;
else
iter->dset_comptype[H5_NFILTERS_IMPL - 1]++; /*other filters*/
- } /* end if */
- } /* end for */
- } /* endif nfltr */
+ } /* end if */
+ } /* end for */
+ } /* endif nfltr */
- if(H5Pclose(dcpl) < 0)
+ if (H5Pclose(dcpl) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Pclose() failed");
- if(H5Dclose(did) < 0)
+ if (H5Dclose(did) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Dclose() failed");
done:
- return ret_value;
-} /* end dataset_stats() */
-
+ return ret_value;
+} /* end dataset_stats() */
/*-------------------------------------------------------------------------
* Function: datatype_stats
@@ -712,12 +707,11 @@ datatype_stats(iter_t *iter, const H5O_info2_t *oi, const H5O_native_info_t *nat
iter->dtype_ohdr_info.free_size += native_oi->hdr.space.free;
/* Update attribute metadata info */
- if((ret_value = attribute_stats(iter, oi, native_oi)) < 0)
+ if ((ret_value = attribute_stats(iter, oi, native_oi)) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "attribute_stats() failed");
done:
- return ret_value;
-} /* end datatype_stats() */
-
+ return ret_value;
+} /* end datatype_stats() */
/*-------------------------------------------------------------------------
* Function: obj_stats
@@ -733,36 +727,35 @@ done:
*-------------------------------------------------------------------------
*/
static herr_t
-obj_stats(const char *path, const H5O_info2_t *oi, const char *already_visited,
- void *_iter)
+obj_stats(const char *path, const H5O_info2_t *oi, const char *already_visited, void *_iter)
{
H5O_native_info_t native_info;
- iter_t *iter = (iter_t *)_iter;
- herr_t ret_value = SUCCEED;
+ iter_t * iter = (iter_t *)_iter;
+ herr_t ret_value = SUCCEED;
/* If the object has already been seen then just return */
- if(NULL == already_visited) {
+ if (NULL == already_visited) {
/* Retrieve the native info for the object */
- if(H5Oget_native_info_by_name(iter->fid, path, &native_info, H5O_NATIVE_INFO_ALL, H5P_DEFAULT) < 0)
+ if (H5Oget_native_info_by_name(iter->fid, path, &native_info, H5O_NATIVE_INFO_ALL, H5P_DEFAULT) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Oget_native_info_by_name failed");
/* Gather some general statistics about the object */
- if(oi->rc > iter->max_links)
+ if (oi->rc > iter->max_links)
iter->max_links = oi->rc;
- switch(oi->type) {
+ switch (oi->type) {
case H5O_TYPE_GROUP:
- if(group_stats(iter, path, oi, &native_info) < 0)
+ if (group_stats(iter, path, oi, &native_info) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "group_stats failed");
break;
case H5O_TYPE_DATASET:
- if(dataset_stats(iter, path, oi, &native_info) < 0)
+ if (dataset_stats(iter, path, oi, &native_info) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "dataset_stats failed");
break;
case H5O_TYPE_NAMED_DATATYPE:
- if(datatype_stats(iter, oi, &native_info) < 0)
+ if (datatype_stats(iter, oi, &native_info) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "datatype_stats failed");
break;
@@ -774,13 +767,12 @@ obj_stats(const char *path, const H5O_info2_t *oi, const char *already_visited,
iter->uniq_others++;
break;
} /* end switch */
- } /* end if */
+ } /* end if */
done:
return ret_value;
} /* end obj_stats() */
-
/*-------------------------------------------------------------------------
* Function: lnk_stats
*
@@ -799,7 +791,7 @@ lnk_stats(const char H5_ATTR_UNUSED *path, const H5L_info2_t *li, void *_iter)
{
iter_t *iter = (iter_t *)_iter;
- switch(li->type) {
+ switch (li->type) {
case H5L_TYPE_SOFT:
case H5L_TYPE_EXTERNAL:
/* Gather statistics about links and UD links */
@@ -833,35 +825,35 @@ lnk_stats(const char H5_ATTR_UNUSED *path, const H5L_info2_t *li, void *_iter)
static herr_t
freespace_stats(hid_t fid, iter_t *iter)
{
- H5F_sect_info_t *sect_info = NULL; /* Free space sections */
- ssize_t nsects; /* Number of free space sections */
- size_t u; /* Local index variable */
+ H5F_sect_info_t *sect_info = NULL; /* Free space sections */
+ ssize_t nsects; /* Number of free space sections */
+ size_t u; /* Local index variable */
/* Query section information */
- if((nsects = H5Fget_free_sections(fid, H5FD_MEM_DEFAULT, 0, NULL)) < 0)
- return(FAIL);
- else if(nsects) {
- if(NULL == (sect_info = (H5F_sect_info_t *)HDcalloc((size_t)nsects, sizeof(H5F_sect_info_t))))
- return(FAIL);
+ if ((nsects = H5Fget_free_sections(fid, H5FD_MEM_DEFAULT, 0, NULL)) < 0)
+ return (FAIL);
+ else if (nsects) {
+ if (NULL == (sect_info = (H5F_sect_info_t *)HDcalloc((size_t)nsects, sizeof(H5F_sect_info_t))))
+ return (FAIL);
nsects = H5Fget_free_sections(fid, H5FD_MEM_DEFAULT, (size_t)nsects, sect_info);
HDassert(nsects);
} /* end else-if */
- for(u = 0; u < (size_t)nsects; u++) {
- unsigned bin; /* "bin" the number of objects falls in */
+ for (u = 0; u < (size_t)nsects; u++) {
+ unsigned bin; /* "bin" the number of objects falls in */
- if(sect_info[u].size < SIZE_SMALL_SECTS)
+ if (sect_info[u].size < SIZE_SMALL_SECTS)
(iter->num_small_sects[(size_t)sect_info[u].size])++;
/* Add section size to proper bin */
bin = ceil_log10((unsigned long)sect_info[u].size);
- if(bin >= iter->sect_nbins) {
+ if (bin >= iter->sect_nbins) {
/* Allocate more storage for section info */
iter->sect_bins = (unsigned long *)HDrealloc(iter->sect_bins, (bin + 1) * sizeof(unsigned long));
HDassert(iter->sect_bins);
/* Initialize counts for intermediate bins */
- while(iter->sect_nbins < bin)
+ while (iter->sect_nbins < bin)
iter->sect_bins[iter->sect_nbins++] = 0;
iter->sect_nbins++;
@@ -872,13 +864,12 @@ freespace_stats(hid_t fid, iter_t *iter)
(iter->sect_bins[bin])++;
} /* end for */
- if(sect_info)
+ if (sect_info)
HDfree(sect_info);
return 0;
} /* end freespace_stats() */
-
/*-------------------------------------------------------------------------
* Function: hand_free
*
@@ -893,11 +884,11 @@ freespace_stats(hid_t fid, iter_t *iter)
static void
hand_free(struct handler_t *hand)
{
- if(hand) {
+ if (hand) {
unsigned u;
- for(u = 0; u < hand->obj_count; u++)
- if(hand->obj[u]) {
+ for (u = 0; u < hand->obj_count; u++)
+ if (hand->obj[u]) {
HDfree(hand->obj[u]);
hand->obj[u] = NULL;
} /* end if */
@@ -907,7 +898,6 @@ hand_free(struct handler_t *hand)
} /* end if */
} /* end hand_free() */
-
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
@@ -925,13 +915,13 @@ hand_free(struct handler_t *hand)
static int
parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
{
- int opt;
- unsigned u;
- struct handler_t *hand = NULL;
+ int opt;
+ unsigned u;
+ struct handler_t *hand = NULL;
/* parse command line options */
- while((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
- switch((char)opt) {
+ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
+ switch ((char)opt) {
case 'h':
usage(h5tools_getprogname());
h5tools_setstatus(EXIT_SUCCESS);
@@ -949,29 +939,29 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
break;
case 'F':
- display_all = FALSE;
+ display_all = FALSE;
display_file_metadata = TRUE;
break;
case 'f':
- display_all = FALSE;
+ display_all = FALSE;
display_file = TRUE;
break;
case 'G':
- display_all = FALSE;
+ display_all = FALSE;
display_group_metadata = TRUE;
break;
case 'g':
- display_all = FALSE;
+ display_all = FALSE;
display_group = TRUE;
break;
case 'l':
- if(opt_arg) {
+ if (opt_arg) {
sgroups_threshold = HDatoi(opt_arg);
- if(sgroups_threshold < 1) {
+ if (sgroups_threshold < 1) {
error_msg("Invalid threshold for small groups\n");
goto error;
}
@@ -982,19 +972,19 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
break;
case 'D':
- display_all = FALSE;
+ display_all = FALSE;
display_dset_metadata = TRUE;
break;
case 'd':
- display_all = FALSE;
+ display_all = FALSE;
display_dset = TRUE;
break;
case 'm':
- if(opt_arg) {
+ if (opt_arg) {
sdsets_threshold = HDatoi(opt_arg);
- if(sdsets_threshold < 1) {
+ if (sdsets_threshold < 1) {
error_msg("Invalid threshold for small datasets\n");
goto error;
}
@@ -1005,19 +995,19 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
break;
case 'T':
- display_all = FALSE;
+ display_all = FALSE;
display_dset_dtype_meta = TRUE;
break;
case 'A':
- display_all = FALSE;
+ display_all = FALSE;
display_attr = TRUE;
break;
case 'a':
- if(opt_arg) {
+ if (opt_arg) {
sattrs_threshold = HDatoi(opt_arg);
- if(sattrs_threshold < 1) {
+ if (sattrs_threshold < 1) {
error_msg("Invalid threshold for small # of attributes\n");
goto error;
}
@@ -1028,35 +1018,35 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
break;
case 's':
- display_all = FALSE;
+ display_all = FALSE;
display_free_sections = TRUE;
break;
case 'S':
- display_all = FALSE;
+ display_all = FALSE;
display_summary = TRUE;
break;
case 'O':
- display_all = FALSE;
+ display_all = FALSE;
display_object = TRUE;
/* Allocate space to hold the command line info */
- if(NULL == (hand = (struct handler_t *)HDcalloc((size_t)1, sizeof(struct handler_t)))) {
+ if (NULL == (hand = (struct handler_t *)HDcalloc((size_t)1, sizeof(struct handler_t)))) {
error_msg("unable to allocate memory for object struct\n");
goto error;
} /* end if */
/* Allocate space to hold the object strings */
hand->obj_count = (size_t)argc;
- if(NULL == (hand->obj = (char **)HDcalloc((size_t)argc, sizeof(char *)))) {
+ if (NULL == (hand->obj = (char **)HDcalloc((size_t)argc, sizeof(char *)))) {
error_msg("unable to allocate memory for object array\n");
goto error;
} /* end if */
/* Store object names */
- for(u = 0; u < hand->obj_count; u++)
- if(NULL == (hand->obj[u] = HDstrdup(opt_arg))) {
+ for (u = 0; u < hand->obj_count; u++)
+ if (NULL == (hand->obj[u] = HDstrdup(opt_arg))) {
error_msg("unable to allocate memory for object name\n");
goto error;
} /* end if */
@@ -1094,10 +1084,10 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
usage(h5tools_getprogname());
goto error;
} /* end switch */
- } /* end while */
+ } /* end while */
/* check for file name to be processed */
- if(argc <= opt_ind) {
+ if (argc <= opt_ind) {
error_msg("missing file name\n");
usage(h5tools_getprogname());
goto error;
@@ -1116,7 +1106,6 @@ error:
return -1;
}
-
/*-------------------------------------------------------------------------
* Function: iter_free
*
@@ -1133,55 +1122,54 @@ iter_free(iter_t *iter)
{
/* Clear array of bins for group counts */
- if(iter->group_bins) {
+ if (iter->group_bins) {
HDfree(iter->group_bins);
iter->group_bins = NULL;
} /* end if */
/* Clear array for tracking small groups */
- if(iter->num_small_groups) {
+ if (iter->num_small_groups) {
HDfree(iter->num_small_groups);
iter->num_small_groups = NULL;
} /* end if */
/* Clear array of bins for attribute counts */
- if(iter->attr_bins) {
+ if (iter->attr_bins) {
HDfree(iter->attr_bins);
iter->attr_bins = NULL;
} /* end if */
/* Clear array for tracking small attributes */
- if(iter->num_small_attrs) {
+ if (iter->num_small_attrs) {
HDfree(iter->num_small_attrs);
- iter->num_small_attrs= NULL;
+ iter->num_small_attrs = NULL;
} /* end if */
/* Clear dataset datatype information found */
- if(iter->dset_type_info) {
+ if (iter->dset_type_info) {
HDfree(iter->dset_type_info);
iter->dset_type_info = NULL;
} /* end if */
/* Clear array of bins for dataset dimensions */
- if(iter->dset_dim_bins) {
+ if (iter->dset_dim_bins) {
HDfree(iter->dset_dim_bins);
iter->dset_dim_bins = NULL;
} /* end if */
/* Clear array of tracking 1-D small datasets */
- if(iter->small_dset_dims) {
+ if (iter->small_dset_dims) {
HDfree(iter->small_dset_dims);
iter->small_dset_dims = NULL;
} /* end if */
/* Clear array of bins for free-space section sizes */
- if(iter->sect_bins) {
+ if (iter->sect_bins) {
HDfree(iter->sect_bins);
iter->sect_bins = NULL;
} /* end if */
} /* end iter_free() */
-
/*-------------------------------------------------------------------------
* Function: print_file_info
*
@@ -1213,7 +1201,6 @@ print_file_info(const iter_t *iter)
return 0;
} /* print_file_info() */
-
/*-------------------------------------------------------------------------
* Function: print_file_metadata
*
@@ -1238,11 +1225,11 @@ print_file_metadata(const iter_t *iter)
HDfprintf(stdout, "\tObject headers: (total/unused)\n");
HDfprintf(stdout, "\t\tGroups: %Hu/%Hu\n", iter->group_ohdr_info.total_size,
- iter->group_ohdr_info.free_size);
- HDfprintf(stdout, "\t\tDatasets(exclude compact data): %Hu/%Hu\n",
- iter->dset_ohdr_info.total_size, iter->dset_ohdr_info.free_size);
+ iter->group_ohdr_info.free_size);
+ HDfprintf(stdout, "\t\tDatasets(exclude compact data): %Hu/%Hu\n", iter->dset_ohdr_info.total_size,
+ iter->dset_ohdr_info.free_size);
HDfprintf(stdout, "\t\tDatatypes: %Hu/%Hu\n", iter->dtype_ohdr_info.total_size,
- iter->dtype_ohdr_info.free_size);
+ iter->dtype_ohdr_info.free_size);
HDfprintf(stdout, "\tGroups:\n");
HDfprintf(stdout, "\t\tB-tree/List: %Hu\n", iter->groups_btree_storage_size);
@@ -1270,7 +1257,6 @@ print_file_metadata(const iter_t *iter)
return 0;
} /* print_file_metadata() */
-
/*-------------------------------------------------------------------------
* Function: print_group_info
*
@@ -1293,32 +1279,32 @@ print_file_metadata(const iter_t *iter)
static herr_t
print_group_info(const iter_t *iter)
{
- unsigned long power; /* Temporary "power" for bins */
- unsigned long total; /* Total count for various statistics */
- unsigned u; /* Local index variable */
+ unsigned long power; /* Temporary "power" for bins */
+ unsigned long total; /* Total count for various statistics */
+ unsigned u; /* Local index variable */
- HDprintf("Small groups (with 0 to %u links):\n", sgroups_threshold-1);
+ HDprintf("Small groups (with 0 to %u links):\n", sgroups_threshold - 1);
total = 0;
- for(u = 0; u < (unsigned)sgroups_threshold; u++) {
- if(iter->num_small_groups[u] > 0) {
+ for (u = 0; u < (unsigned)sgroups_threshold; u++) {
+ if (iter->num_small_groups[u] > 0) {
HDprintf("\t# of groups with %u link(s): %lu\n", u, iter->num_small_groups[u]);
total += iter->num_small_groups[u];
} /* end if */
- } /* end for */
+ } /* end for */
HDprintf("\tTotal # of small groups: %lu\n", total);
HDprintf("Group bins:\n");
total = 0;
- if((iter->group_nbins > 0) && (iter->group_bins[0] > 0)) {
- HDprintf("\t# of groups with 0 link: %lu\n", iter->group_bins[0]);
- total = iter->group_bins[0];
+ if ((iter->group_nbins > 0) && (iter->group_bins[0] > 0)) {
+ HDprintf("\t# of groups with 0 link: %lu\n", iter->group_bins[0]);
+ total = iter->group_bins[0];
} /* end if */
power = 1;
- for(u = 1; u < iter->group_nbins; u++) {
- if(iter->group_bins[u] > 0) {
- HDprintf("\t# of groups with %lu - %lu links: %lu\n", power, (power * 10) - 1,
- iter->group_bins[u]);
- total += iter->group_bins[u];
+ for (u = 1; u < iter->group_nbins; u++) {
+ if (iter->group_bins[u] > 0) {
+ HDprintf("\t# of groups with %lu - %lu links: %lu\n", power, (power * 10) - 1,
+ iter->group_bins[u]);
+ total += iter->group_bins[u];
} /* end if */
power *= 10;
} /* end for */
@@ -1327,7 +1313,6 @@ print_group_info(const iter_t *iter)
return 0;
} /* print_group_info() */
-
/*-------------------------------------------------------------------------
* Function: print_group_metadata
*
@@ -1345,8 +1330,8 @@ print_group_metadata(const iter_t *iter)
{
HDprintf("File space information for groups' metadata (in bytes):\n");
- HDfprintf(stdout, "\tObject headers (total/unused): %Hu/%Hu\n",
- iter->group_ohdr_info.total_size, iter->group_ohdr_info.free_size);
+ HDfprintf(stdout, "\tObject headers (total/unused): %Hu/%Hu\n", iter->group_ohdr_info.total_size,
+ iter->group_ohdr_info.free_size);
HDfprintf(stdout, "\tB-tree/List: %Hu\n", iter->groups_btree_storage_size);
HDfprintf(stdout, "\tHeap: %Hu\n", iter->groups_heap_storage_size);
@@ -1354,7 +1339,6 @@ print_group_metadata(const iter_t *iter)
return 0;
} /* print_group_metadata() */
-
/*-------------------------------------------------------------------------
* Function: print_dataset_info
*
@@ -1371,44 +1355,43 @@ print_group_metadata(const iter_t *iter)
static herr_t
print_dataset_info(const iter_t *iter)
{
- unsigned long power; /* Temporary "power" for bins */
- unsigned long total; /* Total count for various statistics */
- unsigned u; /* Local index variable */
+ unsigned long power; /* Temporary "power" for bins */
+ unsigned long total; /* Total count for various statistics */
+ unsigned u; /* Local index variable */
- if(iter->uniq_dsets > 0) {
+ if (iter->uniq_dsets > 0) {
HDprintf("Dataset dimension information:\n");
HDprintf("\tMax. rank of datasets: %u\n", iter->max_dset_rank);
HDprintf("\tDataset ranks:\n");
- for(u = 0; u < H5S_MAX_RANK; u++)
- if(iter->dset_rank_count[u] > 0)
+ for (u = 0; u < H5S_MAX_RANK; u++)
+ if (iter->dset_rank_count[u] > 0)
HDprintf("\t\t# of dataset with rank %u: %lu\n", u, iter->dset_rank_count[u]);
HDprintf("1-D Dataset information:\n");
HDfprintf(stdout, "\tMax. dimension size of 1-D datasets: %Hu\n", iter->max_dset_dims);
HDprintf("\tSmall 1-D datasets (with dimension sizes 0 to %u):\n", sdsets_threshold - 1);
total = 0;
- for(u = 0; u < (unsigned)sdsets_threshold; u++) {
- if(iter->small_dset_dims[u] > 0) {
- HDprintf("\t\t# of datasets with dimension sizes %u: %lu\n", u,
- iter->small_dset_dims[u]);
+ for (u = 0; u < (unsigned)sdsets_threshold; u++) {
+ if (iter->small_dset_dims[u] > 0) {
+ HDprintf("\t\t# of datasets with dimension sizes %u: %lu\n", u, iter->small_dset_dims[u]);
total += iter->small_dset_dims[u];
} /* end if */
- } /* end for */
+ } /* end for */
HDprintf("\t\tTotal # of small datasets: %lu\n", total);
/* Protect against no datasets in file */
- if(iter->dset_dim_nbins > 0) {
+ if (iter->dset_dim_nbins > 0) {
HDprintf("\t1-D Dataset dimension bins:\n");
total = 0;
- if(iter->dset_dim_bins[0] > 0) {
+ if (iter->dset_dim_bins[0] > 0) {
HDprintf("\t\t# of datasets with dimension size 0: %lu\n", iter->dset_dim_bins[0]);
total = iter->dset_dim_bins[0];
} /* end if */
power = 1;
- for(u = 1; u < iter->dset_dim_nbins; u++) {
- if(iter->dset_dim_bins[u] > 0) {
- HDprintf("\t\t# of datasets with dimension size %lu - %lu: %lu\n", power, (power * 10) - 1,
- iter->dset_dim_bins[u]);
+ for (u = 1; u < iter->dset_dim_nbins; u++) {
+ if (iter->dset_dim_bins[u] > 0) {
+ HDprintf("\t\t# of datasets with dimension size %lu - %lu: %lu\n", power,
+ (power * 10) - 1, iter->dset_dim_bins[u]);
total += iter->dset_dim_bins[u];
} /* end if */
power *= 10;
@@ -1421,27 +1404,29 @@ print_dataset_info(const iter_t *iter)
HDfprintf(stdout, "\tTotal external raw data size: %Hu\n", iter->dset_external_storage_size);
HDprintf("Dataset layout information:\n");
- for(u = 0; u < H5D_NLAYOUTS; u++)
- HDprintf("\tDataset layout counts[%s]: %lu\n", (u == H5D_COMPACT ? "COMPACT" :
- (u == H5D_CONTIGUOUS ? "CONTIG" : (u == H5D_CHUNKED ? "CHUNKED" : "VIRTUAL"))), iter->dset_layouts[u]);
+ for (u = 0; u < H5D_NLAYOUTS; u++)
+ HDprintf("\tDataset layout counts[%s]: %lu\n",
+ (u == H5D_COMPACT
+ ? "COMPACT"
+ : (u == H5D_CONTIGUOUS ? "CONTIG" : (u == H5D_CHUNKED ? "CHUNKED" : "VIRTUAL"))),
+ iter->dset_layouts[u]);
HDprintf("\tNumber of external files : %lu\n", iter->nexternal);
HDprintf("Dataset filters information:\n");
HDprintf("\tNumber of datasets with:\n");
- HDprintf("\t\tNO filter: %lu\n", iter->dset_comptype[H5Z_FILTER_ERROR+1]);
+ HDprintf("\t\tNO filter: %lu\n", iter->dset_comptype[H5Z_FILTER_ERROR + 1]);
HDprintf("\t\tGZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_DEFLATE]);
HDprintf("\t\tSHUFFLE filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SHUFFLE]);
HDprintf("\t\tFLETCHER32 filter: %lu\n", iter->dset_comptype[H5Z_FILTER_FLETCHER32]);
HDprintf("\t\tSZIP filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SZIP]);
HDprintf("\t\tNBIT filter: %lu\n", iter->dset_comptype[H5Z_FILTER_NBIT]);
HDprintf("\t\tSCALEOFFSET filter: %lu\n", iter->dset_comptype[H5Z_FILTER_SCALEOFFSET]);
- HDprintf("\t\tUSER-DEFINED filter: %lu\n", iter->dset_comptype[H5_NFILTERS_IMPL-1]);
+ HDprintf("\t\tUSER-DEFINED filter: %lu\n", iter->dset_comptype[H5_NFILTERS_IMPL - 1]);
} /* end if */
return 0;
} /* print_dataset_info() */
-
/*-------------------------------------------------------------------------
* Function: print_dataset_metadata
*
@@ -1460,17 +1445,15 @@ print_dset_metadata(const iter_t *iter)
{
HDprintf("File space information for datasets' metadata (in bytes):\n");
- HDfprintf(stdout, "\tObject headers (total/unused): %Hu/%Hu\n",
- iter->dset_ohdr_info.total_size, iter->dset_ohdr_info.free_size);
+ HDfprintf(stdout, "\tObject headers (total/unused): %Hu/%Hu\n", iter->dset_ohdr_info.total_size,
+ iter->dset_ohdr_info.free_size);
- HDfprintf(stdout, "\tIndex for Chunked datasets: %Hu\n",
- iter->datasets_index_storage_size);
+ HDfprintf(stdout, "\tIndex for Chunked datasets: %Hu\n", iter->datasets_index_storage_size);
HDfprintf(stdout, "\tHeap: %Hu\n", iter->datasets_heap_storage_size);
return 0;
} /* print_dset_metadata() */
-
/*-------------------------------------------------------------------------
* Function: print_dset_dtype_meta
*
@@ -1487,21 +1470,21 @@ print_dset_metadata(const iter_t *iter)
static herr_t
print_dset_dtype_meta(const iter_t *iter)
{
- unsigned long total; /* Total count for various statistics */
- size_t dtype_size; /* Size of encoded datatype */
- unsigned u; /* Local index variable */
+ unsigned long total; /* Total count for various statistics */
+ size_t dtype_size; /* Size of encoded datatype */
+ unsigned u; /* Local index variable */
- if(iter->dset_ntypes) {
+ if (iter->dset_ntypes) {
HDprintf("Dataset datatype information:\n");
HDprintf("\t# of unique datatypes used by datasets: %lu\n", iter->dset_ntypes);
total = 0;
- for(u = 0; u < iter->dset_ntypes; u++) {
+ for (u = 0; u < iter->dset_ntypes; u++) {
H5Tencode(iter->dset_type_info[u].tid, NULL, &dtype_size);
HDprintf("\tDataset datatype #%u:\n", u);
- HDprintf("\t\tCount (total/named) = (%lu/%lu)\n",
- iter->dset_type_info[u].count, iter->dset_type_info[u].named);
+ HDprintf("\t\tCount (total/named) = (%lu/%lu)\n", iter->dset_type_info[u].count,
+ iter->dset_type_info[u].named);
HDprintf("\t\tSize (desc./elmt) = (%lu/%lu)\n", (unsigned long)dtype_size,
- (unsigned long)H5Tget_size(iter->dset_type_info[u].tid));
+ (unsigned long)H5Tget_size(iter->dset_type_info[u].tid));
H5Tclose(iter->dset_type_info[u].tid);
total += iter->dset_type_info[u].count;
} /* end for */
@@ -1511,7 +1494,6 @@ print_dset_dtype_meta(const iter_t *iter)
return 0;
} /* print_dset_dtype_meta() */
-
/*-------------------------------------------------------------------------
* Function: print_attr_info
*
@@ -1529,28 +1511,28 @@ print_dset_dtype_meta(const iter_t *iter)
static herr_t
print_attr_info(const iter_t *iter)
{
- unsigned long power; /* Temporary "power" for bins */
- unsigned long total; /* Total count for various statistics */
- unsigned u; /* Local index variable */
+ unsigned long power; /* Temporary "power" for bins */
+ unsigned long total; /* Total count for various statistics */
+ unsigned u; /* Local index variable */
HDprintf("Small # of attributes (objects with 1 to %u attributes):\n", sattrs_threshold);
total = 0;
- for(u = 1; u <= (unsigned)sattrs_threshold; u++) {
- if(iter->num_small_attrs[u] > 0) {
+ for (u = 1; u <= (unsigned)sattrs_threshold; u++) {
+ if (iter->num_small_attrs[u] > 0) {
HDprintf("\t# of objects with %u attributes: %lu\n", u, iter->num_small_attrs[u]);
total += iter->num_small_attrs[u];
} /* end if */
- } /* end for */
+ } /* end for */
HDprintf("\tTotal # of objects with small # of attributes: %lu\n", total);
HDprintf("Attribute bins:\n");
total = 0;
power = 1;
- for(u = 1; u < iter->attr_nbins; u++) {
- if(iter->attr_bins[u] > 0) {
- HDprintf("\t# of objects with %lu - %lu attributes: %lu\n", power, (power * 10) - 1,
- iter->attr_bins[u]);
- total += iter->attr_bins[u];
+ for (u = 1; u < iter->attr_nbins; u++) {
+ if (iter->attr_bins[u] > 0) {
+ HDprintf("\t# of objects with %lu - %lu attributes: %lu\n", power, (power * 10) - 1,
+ iter->attr_bins[u]);
+ total += iter->attr_bins[u];
} /* end if */
power *= 10;
} /* end for */
@@ -1560,7 +1542,6 @@ print_attr_info(const iter_t *iter)
return 0;
} /* print_attr_info() */
-
/*-------------------------------------------------------------------------
* Function: print_freespace_info
*
@@ -1577,31 +1558,30 @@ print_attr_info(const iter_t *iter)
static herr_t
print_freespace_info(const iter_t *iter)
{
- unsigned long power; /* Temporary "power" for bins */
- unsigned long total; /* Total count for various statistics */
- unsigned u; /* Local index variable */
+ unsigned long power; /* Temporary "power" for bins */
+ unsigned long total; /* Total count for various statistics */
+ unsigned u; /* Local index variable */
HDfprintf(stdout, "Free-space persist: %s\n", iter->fs_persist ? "TRUE" : "FALSE");
HDfprintf(stdout, "Free-space section threshold: %Hu bytes\n", iter->fs_threshold);
HDprintf("Small size free-space sections (< %u bytes):\n", (unsigned)SIZE_SMALL_SECTS);
total = 0;
- for(u = 0; u < SIZE_SMALL_SECTS; u++) {
- if(iter->num_small_sects[u] > 0) {
+ for (u = 0; u < SIZE_SMALL_SECTS; u++) {
+ if (iter->num_small_sects[u] > 0) {
HDprintf("\t# of sections of size %u: %lu\n", u, iter->num_small_sects[u]);
total += iter->num_small_sects[u];
} /* end if */
- } /* end for */
+ } /* end for */
HDprintf("\tTotal # of small size sections: %lu\n", total);
HDprintf("Free-space section bins:\n");
total = 0;
power = 1;
- for(u = 1; u < iter->sect_nbins; u++) {
- if(iter->sect_bins[u] > 0) {
- HDprintf("\t# of sections of size %lu - %lu: %lu\n", power, (power * 10) - 1,
- iter->sect_bins[u]);
- total += iter->sect_bins[u];
+ for (u = 1; u < iter->sect_nbins; u++) {
+ if (iter->sect_bins[u] > 0) {
+ HDprintf("\t# of sections of size %lu - %lu: %lu\n", power, (power * 10) - 1, iter->sect_bins[u]);
+ total += iter->sect_bins[u];
} /* end if */
power *= 10;
} /* end for */
@@ -1610,7 +1590,6 @@ print_freespace_info(const iter_t *iter)
return 0;
} /* print_freespace_info() */
-
/*-------------------------------------------------------------------------
* Function: print_storage_summary
*
@@ -1628,36 +1607,27 @@ static herr_t
print_storage_summary(const iter_t *iter)
{
hsize_t total_meta = 0;
- hsize_t unaccount = 0;
- double percent = 0.0f;
+ hsize_t unaccount = 0;
+ double percent = 0.0f;
HDfprintf(stdout, "File space management strategy: %s\n", FS_STRATEGY_NAME[iter->fs_strategy]);
HDfprintf(stdout, "File space page size: %Hu bytes\n", iter->fsp_size);
HDprintf("Summary of file space information:\n");
total_meta =
- iter->super_size + iter->super_ext_size + iter->ublk_size +
- iter->group_ohdr_info.total_size +
- iter->dset_ohdr_info.total_size +
- iter->dtype_ohdr_info.total_size +
- iter->groups_btree_storage_size +
- iter->groups_heap_storage_size +
- iter->attrs_btree_storage_size +
- iter->attrs_heap_storage_size +
- iter->datasets_index_storage_size +
- iter->datasets_heap_storage_size +
- iter->SM_hdr_storage_size +
- iter->SM_index_storage_size +
- iter->SM_heap_storage_size +
- iter->free_hdr;
+ iter->super_size + iter->super_ext_size + iter->ublk_size + iter->group_ohdr_info.total_size +
+ iter->dset_ohdr_info.total_size + iter->dtype_ohdr_info.total_size + iter->groups_btree_storage_size +
+ iter->groups_heap_storage_size + iter->attrs_btree_storage_size + iter->attrs_heap_storage_size +
+ iter->datasets_index_storage_size + iter->datasets_heap_storage_size + iter->SM_hdr_storage_size +
+ iter->SM_index_storage_size + iter->SM_heap_storage_size + iter->free_hdr;
HDfprintf(stdout, " File metadata: %Hu bytes\n", total_meta);
HDfprintf(stdout, " Raw data: %Hu bytes\n", iter->dset_storage_size);
percent = ((double)iter->free_space / (double)iter->filesize) * (double)100.0f;
- HDfprintf(stdout, " Amount/Percent of tracked free space: %Hu bytes/%3.1f%\n",
- iter->free_space, percent);
+ HDfprintf(stdout, " Amount/Percent of tracked free space: %Hu bytes/%3.1f%\n", iter->free_space,
+ percent);
- if(iter->filesize < (total_meta + iter->dset_storage_size + iter->free_space)) {
+ if (iter->filesize < (total_meta + iter->dset_storage_size + iter->free_space)) {
unaccount = (total_meta + iter->dset_storage_size + iter->free_space) - iter->filesize;
HDfprintf(stdout, " ??? File has %Hu more bytes accounted for than its size! ???\n", unaccount);
}
@@ -1666,15 +1636,15 @@ print_storage_summary(const iter_t *iter)
HDfprintf(stdout, " Unaccounted space: %Hu bytes\n", unaccount);
}
- HDfprintf(stdout, "Total space: %Hu bytes\n", total_meta + iter->dset_storage_size + iter->free_space + unaccount);
+ HDfprintf(stdout, "Total space: %Hu bytes\n",
+ total_meta + iter->dset_storage_size + iter->free_space + unaccount);
- if(iter->nexternal)
+ if (iter->nexternal)
HDfprintf(stdout, "External raw data: %Hu bytes\n", iter->dset_external_storage_size);
return 0;
} /* print_storage_summary() */
-
/*-------------------------------------------------------------------------
* Function: print_file_statistics
*
@@ -1692,36 +1662,45 @@ print_storage_summary(const iter_t *iter)
static void
print_file_statistics(const iter_t *iter)
{
- if(display_all) {
- display_file = TRUE;
- display_group = TRUE;
- display_dset = TRUE;
+ if (display_all) {
+ display_file = TRUE;
+ display_group = TRUE;
+ display_dset = TRUE;
display_dset_dtype_meta = TRUE;
- display_attr = TRUE;
- display_free_sections = TRUE;
- display_summary = TRUE;
+ display_attr = TRUE;
+ display_free_sections = TRUE;
+ display_summary = TRUE;
- display_file_metadata = TRUE;
+ display_file_metadata = TRUE;
display_group_metadata = TRUE;
- display_dset_metadata = TRUE;
+ display_dset_metadata = TRUE;
}
- if(display_file) print_file_info(iter);
- if(display_file_metadata) print_file_metadata(iter);
-
- if(display_group) print_group_info(iter);
- if(!display_all && display_group_metadata) print_group_metadata(iter);
-
- if(display_dset) print_dataset_info(iter);
- if(display_dset_dtype_meta) print_dset_dtype_meta(iter);
- if(!display_all && display_dset_metadata) print_dset_metadata(iter);
-
- if(display_attr) print_attr_info(iter);
- if(display_free_sections) print_freespace_info(iter);
- if(display_summary) print_storage_summary(iter);
+ if (display_file)
+ print_file_info(iter);
+ if (display_file_metadata)
+ print_file_metadata(iter);
+
+ if (display_group)
+ print_group_info(iter);
+ if (!display_all && display_group_metadata)
+ print_group_metadata(iter);
+
+ if (display_dset)
+ print_dataset_info(iter);
+ if (display_dset_dtype_meta)
+ print_dset_dtype_meta(iter);
+ if (!display_all && display_dset_metadata)
+ print_dset_metadata(iter);
+
+ if (display_attr)
+ print_attr_info(iter);
+ if (display_free_sections)
+ print_freespace_info(iter);
+ if (display_summary)
+ print_storage_summary(iter);
} /* print_file_statistics() */
-
/*-------------------------------------------------------------------------
* Function: print_object_statistics
*
@@ -1744,7 +1723,6 @@ print_object_statistics(const char *name)
HDprintf("Object name %s\n", name);
} /* print_object_statistics() */
-
/*-------------------------------------------------------------------------
* Function: print_statistics
*
@@ -1764,13 +1742,12 @@ print_object_statistics(const char *name)
static void
print_statistics(const char *name, const iter_t *iter)
{
- if(display_object)
+ if (display_object)
print_object_statistics(name);
else
print_file_statistics(iter);
} /* print_statistics() */
-
/*-------------------------------------------------------------------------
* Function: main
*
@@ -1783,11 +1760,11 @@ print_statistics(const char *name, const iter_t *iter)
int
main(int argc, const char *argv[])
{
- iter_t iter;
- const char *fname = NULL;
- hid_t fid = H5I_INVALID_HID;
- struct handler_t *hand = NULL;
- hid_t fapl_id = H5P_DEFAULT;
+ iter_t iter;
+ const char * fname = NULL;
+ hid_t fid = H5I_INVALID_HID;
+ struct handler_t *hand = NULL;
+ hid_t fapl_id = H5P_DEFAULT;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
@@ -1797,7 +1774,7 @@ main(int argc, const char *argv[])
HDmemset(&iter, 0, sizeof(iter));
- if(parse_command_line(argc, argv, &hand) < 0)
+ if (parse_command_line(argc, argv, &hand) < 0)
goto done;
/* enable error reporting if command line option */
@@ -1806,8 +1783,8 @@ main(int argc, const char *argv[])
if (drivername) {
h5tools_vfd_info_t vfd_info;
- vfd_info.info = NULL;
- vfd_info.name = drivername;
+ vfd_info.info = NULL;
+ vfd_info.name = drivername;
if (!HDstrcmp(drivername, drivernames[ROS3_VFD_IDX])) {
#ifdef H5_HAVE_ROS3_VFD
@@ -1835,16 +1812,15 @@ main(int argc, const char *argv[])
fname = argv[opt_ind];
/* Check for filename given */
- if(fname) {
- hid_t fcpl;
- H5F_info2_t finfo;
+ if (fname) {
+ hid_t fcpl;
+ H5F_info2_t finfo;
HDprintf("Filename: %s\n", fname);
- fid = h5tools_fopen(fname, H5F_ACC_RDONLY, fapl_id,
- (fapl_id == H5P_DEFAULT) ? FALSE : TRUE, NULL, 0);
+ fid = h5tools_fopen(fname, H5F_ACC_RDONLY, fapl_id, (fapl_id == H5P_DEFAULT) ? FALSE : TRUE, NULL, 0);
- if(fid < 0) {
+ if (fid < 0) {
error_msg("unable to open file \"%s\"\n", fname);
h5tools_setstatus(EXIT_FAILURE);
goto done;
@@ -1853,72 +1829,74 @@ main(int argc, const char *argv[])
/* Initialize iter structure */
iter.fid = fid;
- if(H5Fget_filesize(fid, &iter.filesize) < 0)
+ if (H5Fget_filesize(fid, &iter.filesize) < 0)
warn_msg("Unable to retrieve file size\n");
HDassert(iter.filesize != 0);
/* Get storge info for file-level structures */
- if(H5Fget_info2(fid, &finfo) < 0)
+ if (H5Fget_info2(fid, &finfo) < 0)
warn_msg("Unable to retrieve file info\n");
else {
- iter.super_size = finfo.super.super_size;
- iter.super_ext_size = finfo.super.super_ext_size;
- iter.SM_hdr_storage_size = finfo.sohm.hdr_size;
+ iter.super_size = finfo.super.super_size;
+ iter.super_ext_size = finfo.super.super_ext_size;
+ iter.SM_hdr_storage_size = finfo.sohm.hdr_size;
iter.SM_index_storage_size = finfo.sohm.msgs_info.index_size;
- iter.SM_heap_storage_size = finfo.sohm.msgs_info.heap_size;
- iter.free_space = finfo.free.tot_space;
- iter.free_hdr = finfo.free.meta_size;
+ iter.SM_heap_storage_size = finfo.sohm.msgs_info.heap_size;
+ iter.free_space = finfo.free.tot_space;
+ iter.free_hdr = finfo.free.meta_size;
} /* end else */
iter.num_small_groups = (unsigned long *)HDcalloc((size_t)sgroups_threshold, sizeof(unsigned long));
- iter.num_small_attrs = (unsigned long *)HDcalloc((size_t)(sattrs_threshold+1), sizeof(unsigned long));
+ iter.num_small_attrs =
+ (unsigned long *)HDcalloc((size_t)(sattrs_threshold + 1), sizeof(unsigned long));
iter.small_dset_dims = (unsigned long *)HDcalloc((size_t)sdsets_threshold, sizeof(unsigned long));
- if(iter.num_small_groups == NULL || iter.num_small_attrs == NULL || iter.small_dset_dims == NULL) {
+ if (iter.num_small_groups == NULL || iter.num_small_attrs == NULL || iter.small_dset_dims == NULL) {
error_msg("Unable to allocate memory for tracking small groups/datasets/attributes\n");
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
- if((fcpl = H5Fget_create_plist(fid)) < 0)
+ if ((fcpl = H5Fget_create_plist(fid)) < 0)
warn_msg("Unable to retrieve file creation property\n");
- if(H5Pget_userblock(fcpl, &iter.ublk_size) < 0)
+ if (H5Pget_userblock(fcpl, &iter.ublk_size) < 0)
warn_msg("Unable to retrieve userblock size\n");
- if(H5Pget_file_space_strategy(fcpl, &iter.fs_strategy, &iter.fs_persist, &iter.fs_threshold) < 0)
+ if (H5Pget_file_space_strategy(fcpl, &iter.fs_strategy, &iter.fs_persist, &iter.fs_threshold) < 0)
warn_msg("Unable to retrieve file space information\n");
HDassert(iter.fs_strategy >= 0 && iter.fs_strategy < H5F_FSPACE_STRATEGY_NTYPES);
- if(H5Pget_file_space_page_size(fcpl, &iter.fsp_size) < 0)
+ if (H5Pget_file_space_page_size(fcpl, &iter.fsp_size) < 0)
warn_msg("Unable to retrieve file space page size\n");
/* get information for free-space sections */
- if(freespace_stats(fid, &iter) < 0)
+ if (freespace_stats(fid, &iter) < 0)
warn_msg("Unable to retrieve freespace info\n");
/* Walk the objects or all file */
- if(display_object) {
+ if (display_object) {
unsigned u;
- for(u = 0; u < hand->obj_count; u++) {
- if(h5trav_visit(fid, hand->obj[u], TRUE, TRUE, obj_stats, lnk_stats, &iter, H5O_INFO_ALL) < 0) {
+ for (u = 0; u < hand->obj_count; u++) {
+ if (h5trav_visit(fid, hand->obj[u], TRUE, TRUE, obj_stats, lnk_stats, &iter, H5O_INFO_ALL) <
+ 0) {
error_msg("unable to traverse object \"%s\"\n", hand->obj[u]);
h5tools_setstatus(EXIT_FAILURE);
}
else
print_statistics(hand->obj[u], &iter);
} /* end for */
- } /* end if */
+ } /* end if */
else {
- if(h5trav_visit(fid, "/", TRUE, TRUE, obj_stats, lnk_stats, &iter, H5O_INFO_ALL) < 0) {
+ if (h5trav_visit(fid, "/", TRUE, TRUE, obj_stats, lnk_stats, &iter, H5O_INFO_ALL) < 0) {
error_msg("unable to traverse objects/links in file \"%s\"\n", fname);
h5tools_setstatus(EXIT_FAILURE);
}
else
print_statistics("/", &iter);
} /* end else */
- } /* end if */
+ } /* end if */
done:
hand_free(hand);
@@ -1933,11 +1911,10 @@ done:
}
}
- if(fid >= 0 && H5Fclose(fid) < 0) {
+ if (fid >= 0 && H5Fclose(fid) < 0) {
error_msg("unable to close file \"%s\"\n", fname);
h5tools_setstatus(EXIT_FAILURE);
} /* end if */
leave(h5tools_getstatus());
} /* end main() */
-
generated by cgit v0.12 at 2025-01-19 22:45:45 (GMT)