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author | Allen Byrne <byrn@hdfgroup.org> | 2020-10-01 15:29:53 (GMT) |
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committer | Allen Byrne <byrn@hdfgroup.org> | 2020-10-01 15:29:53 (GMT) |
commit | ec8ad09125032c9c232878d02e90aa86df162841 (patch) | |
tree | 5d63105d3a0db7d5bbee41c5b74b097649a2115e /tools/src/misc | |
parent | 453238e90e1574ef1c15e3c79f7fb3d77920e77c (diff) | |
download | hdf5-ec8ad09125032c9c232878d02e90aa86df162841.zip hdf5-ec8ad09125032c9c232878d02e90aa86df162841.tar.gz hdf5-ec8ad09125032c9c232878d02e90aa86df162841.tar.bz2 |
Source formatted
Diffstat (limited to 'tools/src/misc')
-rw-r--r-- | tools/src/misc/h5clear.c | 196 | ||||
-rw-r--r-- | tools/src/misc/h5debug.c | 473 | ||||
-rw-r--r-- | tools/src/misc/h5mkgrp.c | 103 | ||||
-rw-r--r-- | tools/src/misc/h5repart.c | 334 |
4 files changed, 563 insertions, 543 deletions
diff --git a/tools/src/misc/h5clear.c b/tools/src/misc/h5clear.c index 96cbf9c..0ef9483 100644 --- a/tools/src/misc/h5clear.c +++ b/tools/src/misc/h5clear.c @@ -24,64 +24,60 @@ #include "h5tools_utils.h" /* Name of tool */ -#define PROGRAMNAME "h5clear" +#define PROGRAMNAME "h5clear" /* Make these private properties (defined in H5Fprivate.h) available to h5clear. */ -#define H5F_ACS_CLEAR_STATUS_FLAGS_NAME "clear_status_flags" -#define H5F_ACS_NULL_FSM_ADDR_NAME "null_fsm_addr" -#define H5F_ACS_SKIP_EOF_CHECK_NAME "skip_eof_check" +#define H5F_ACS_CLEAR_STATUS_FLAGS_NAME "clear_status_flags" +#define H5F_ACS_NULL_FSM_ADDR_NAME "null_fsm_addr" +#define H5F_ACS_SKIP_EOF_CHECK_NAME "skip_eof_check" /* Default increment is 1 megabytes for the --increment option */ -#define DEFAULT_INCREMENT 1024*1024 +#define DEFAULT_INCREMENT 1024 * 1024 -static char *fname_g = NULL; +static char * fname_g = NULL; static hbool_t clear_status_flags = FALSE; static hbool_t remove_cache_image = FALSE; -static hbool_t print_filesize = FALSE; -static hbool_t increment_eoa_eof = FALSE; -static hsize_t increment = DEFAULT_INCREMENT; +static hbool_t print_filesize = FALSE; +static hbool_t increment_eoa_eof = FALSE; +static hsize_t increment = DEFAULT_INCREMENT; /* * Command-line options: only publicize long options */ -static const char *s_opts = "hVsmzi*"; -static struct long_options l_opts[] = { - { "help", no_arg, 'h' }, - { "hel", no_arg, 'h'}, - { "he", no_arg, 'h'}, - { "version", no_arg, 'V' }, - { "version", no_arg, 'V' }, - { "versio", no_arg, 'V' }, - { "versi", no_arg, 'V' }, - { "vers", no_arg, 'V' }, - { "status", no_arg, 's' }, - { "statu", no_arg, 's' }, - { "stat", no_arg, 's' }, - { "sta", no_arg, 's' }, - { "st", no_arg, 's' }, - { "image", no_arg, 'm' }, - { "imag", no_arg, 'm' }, - { "ima", no_arg, 'm' }, - { "im", no_arg, 'm' }, - { "filesize", no_arg, 'z' }, - { "filesiz", no_arg, 'z' }, - { "filesi", no_arg, 'z' }, - { "files", no_arg, 'z' }, - { "file", no_arg, 'z' }, - { "fil", no_arg, 'z' }, - { "fi", no_arg, 'z' }, - { "increment", optional_arg, 'i' }, - { "incremen", optional_arg, 'i' }, - { "increme", optional_arg, 'i' }, - { "increm", optional_arg, 'i' }, - { "incre", optional_arg, 'i' }, - { "incr", optional_arg, 'i' }, - { "inc", optional_arg, 'i' }, - { "in", optional_arg, 'i' }, - { NULL, 0, '\0' } -}; - - +static const char * s_opts = "hVsmzi*"; +static struct long_options l_opts[] = {{"help", no_arg, 'h'}, + {"hel", no_arg, 'h'}, + {"he", no_arg, 'h'}, + {"version", no_arg, 'V'}, + {"version", no_arg, 'V'}, + {"versio", no_arg, 'V'}, + {"versi", no_arg, 'V'}, + {"vers", no_arg, 'V'}, + {"status", no_arg, 's'}, + {"statu", no_arg, 's'}, + {"stat", no_arg, 's'}, + {"sta", no_arg, 's'}, + {"st", no_arg, 's'}, + {"image", no_arg, 'm'}, + {"imag", no_arg, 'm'}, + {"ima", no_arg, 'm'}, + {"im", no_arg, 'm'}, + {"filesize", no_arg, 'z'}, + {"filesiz", no_arg, 'z'}, + {"filesi", no_arg, 'z'}, + {"files", no_arg, 'z'}, + {"file", no_arg, 'z'}, + {"fil", no_arg, 'z'}, + {"fi", no_arg, 'z'}, + {"increment", optional_arg, 'i'}, + {"incremen", optional_arg, 'i'}, + {"increme", optional_arg, 'i'}, + {"increm", optional_arg, 'i'}, + {"incre", optional_arg, 'i'}, + {"incr", optional_arg, 'i'}, + {"inc", optional_arg, 'i'}, + {"in", optional_arg, 'i'}, + {NULL, 0, '\0'}}; /*------------------------------------------------------------------------- * Function: usage @@ -92,7 +88,8 @@ static struct long_options l_opts[] = { * *------------------------------------------------------------------------- */ -static void usage(const char *prog) +static void +usage(const char *prog) { HDfprintf(stdout, "usage: %s [OPTIONS] file_name\n", prog); HDfprintf(stdout, " OPTIONS\n"); @@ -101,12 +98,17 @@ static void usage(const char *prog) HDfprintf(stdout, " -s, --status Clear the status_flags field in the file's superblock\n"); HDfprintf(stdout, " -m, --image Remove the metadata cache image from the file\n"); HDfprintf(stdout, " --filesize Print the file's EOA and EOF\n"); - HDfprintf(stdout, " --increment=C Set the file's EOA to the maximum of (EOA, EOF) + C for\n"); + HDfprintf(stdout, + " --increment=C Set the file's EOA to the maximum of (EOA, EOF) + C for\n"); HDfprintf(stdout, " the file <file_name>.\n"); - HDfprintf(stdout, " C is >= 0; C is optional and will default to 1M when not set.\n"); - HDfprintf(stdout, " This option helps to repair a crashed file where the stored EOA\n"); + HDfprintf(stdout, + " C is >= 0; C is optional and will default to 1M when not set.\n"); + HDfprintf( + stdout, + " This option helps to repair a crashed file where the stored EOA\n"); HDfprintf(stdout, " in the superblock is different from the actual EOF.\n"); - HDfprintf(stdout, " The file’s EOA and EOF will be the same after applying\n"); + HDfprintf(stdout, + " The file’s EOA and EOF will be the same after applying\n"); HDfprintf(stdout, " this option to the file.\n"); HDfprintf(stdout, "\n"); HDfprintf(stdout, "Examples of use:\n"); @@ -124,7 +126,6 @@ static void usage(const char *prog) HDfprintf(stdout, " Set the EOA to the maximum of (EOA, EOF) + 512 for the file <file_name>.\n"); } /* usage() */ - /*------------------------------------------------------------------------- * Function: parse_command_line * @@ -141,7 +142,7 @@ parse_command_line(int argc, const char **argv) { int opt; - /* no arguments */ + /* no arguments */ if (argc == 1) { usage(h5tools_getprogname()); h5tools_setstatus(EXIT_FAILURE); @@ -149,8 +150,8 @@ parse_command_line(int argc, const char **argv) } /* parse command line options */ - while((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { - switch((char)opt) { + while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { + switch ((char)opt) { case 'h': usage(h5tools_getprogname()); h5tools_setstatus(EXIT_SUCCESS); @@ -175,7 +176,7 @@ parse_command_line(int argc, const char **argv) case 'i': increment_eoa_eof = TRUE; - if(opt_arg != NULL) { + if (opt_arg != NULL) { if (HDatoi(opt_arg) < 0) { usage(h5tools_getprogname()); goto done; @@ -189,10 +190,10 @@ parse_command_line(int argc, const char **argv) h5tools_setstatus(EXIT_FAILURE); goto error; } /* end switch */ - } /* end while */ + } /* end while */ /* check for file name to be processed */ - if(argc <= opt_ind) { + if (argc <= opt_ind) { error_msg("missing file name\n"); usage(h5tools_getprogname()); h5tools_setstatus(EXIT_FAILURE); @@ -202,7 +203,7 @@ parse_command_line(int argc, const char **argv) fname_g = HDstrdup(argv[opt_ind]); done: - return(0); + return (0); error: return -1; @@ -224,8 +225,6 @@ leave(int ret) HDexit(ret); } /* leave() */ - - /*------------------------------------------------------------------------- * Function: main * @@ -254,14 +253,14 @@ leave(int ret) *------------------------------------------------------------------------- */ int -main (int argc, const char *argv[]) +main(int argc, const char *argv[]) { - char *fname = NULL; /* File name */ - hid_t fapl = H5I_INVALID_HID; /* File access property list */ - hid_t fid = H5I_INVALID_HID; /* File ID */ - haddr_t image_addr; - hsize_t image_len; - unsigned flags = H5F_ACC_RDWR; /* file access flags */ + char * fname = NULL; /* File name */ + hid_t fapl = H5I_INVALID_HID; /* File access property list */ + hid_t fid = H5I_INVALID_HID; /* File ID */ + haddr_t image_addr; + hsize_t image_len; + unsigned flags = H5F_ACC_RDWR; /* file access flags */ h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); @@ -270,26 +269,24 @@ main (int argc, const char *argv[]) h5tools_init(); /* Parse command line options */ - if(parse_command_line(argc, argv) < 0) + if (parse_command_line(argc, argv) < 0) goto done; - if(fname_g == NULL) + if (fname_g == NULL) goto done; /* enable error reporting if command line option */ h5tools_error_report(); /* Print usage/exit if not using at least one of the options */ - if(!clear_status_flags && !remove_cache_image && - !increment_eoa_eof && !print_filesize) { + if (!clear_status_flags && !remove_cache_image && !increment_eoa_eof && !print_filesize) { usage(h5tools_getprogname()); h5tools_setstatus(EXIT_FAILURE); goto done; } /* Cannot combine the --filesize option with other options */ - if(print_filesize && - (clear_status_flags || remove_cache_image || increment_eoa_eof)) { + if (print_filesize && (clear_status_flags || remove_cache_image || increment_eoa_eof)) { error_msg("Cannot combine --filesize with other options\n"); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -299,17 +296,17 @@ main (int argc, const char *argv[]) fname = HDstrdup(fname_g); /* Get a copy of the file access property list */ - if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { + if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { error_msg("H5Pcreate\n"); h5tools_setstatus(EXIT_FAILURE); goto done; - } + } /* -s option */ - if(clear_status_flags) { + if (clear_status_flags) { /* Set to clear the status_flags in the file's superblock */ /* Activate this private property */ - if(H5Pset(fapl, H5F_ACS_CLEAR_STATUS_FLAGS_NAME, &clear_status_flags) < 0) { + if (H5Pset(fapl, H5F_ACS_CLEAR_STATUS_FLAGS_NAME, &clear_status_flags) < 0) { error_msg("H5Pset\n"); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -317,15 +314,15 @@ main (int argc, const char *argv[]) } /* --increment option */ - if(increment_eoa_eof) { + if (increment_eoa_eof) { /* Activate this private property */ - if(H5Pset(fapl, H5F_ACS_SKIP_EOF_CHECK_NAME, &increment_eoa_eof) < 0) { + if (H5Pset(fapl, H5F_ACS_SKIP_EOF_CHECK_NAME, &increment_eoa_eof) < 0) { error_msg("H5Pset\n"); h5tools_setstatus(EXIT_FAILURE); goto done; } /* Activate this private property */ - if(H5Pset(fapl, H5F_ACS_NULL_FSM_ADDR_NAME, &increment_eoa_eof) < 0) { + if (H5Pset(fapl, H5F_ACS_NULL_FSM_ADDR_NAME, &increment_eoa_eof) < 0) { error_msg("H5Pset\n"); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -333,9 +330,9 @@ main (int argc, const char *argv[]) } /* --filesize option; open the file read-only */ - if(print_filesize) { + if (print_filesize) { /* Activate this private property */ - if(H5Pset(fapl, H5F_ACS_SKIP_EOF_CHECK_NAME, &print_filesize) < 0) { + if (H5Pset(fapl, H5F_ACS_SKIP_EOF_CHECK_NAME, &print_filesize) < 0) { error_msg("H5Pset\n"); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -344,19 +341,19 @@ main (int argc, const char *argv[]) } /* Open the file */ - if((fid = h5tools_fopen(fname, flags, fapl, FALSE, NULL, (size_t)0)) < 0) { + if ((fid = h5tools_fopen(fname, flags, fapl, FALSE, NULL, (size_t)0)) < 0) { error_msg("h5tools_fopen\n"); h5tools_setstatus(EXIT_FAILURE); goto done; } /* --filesize option */ - if(print_filesize) { - h5_stat_t st; /* Stat info call */ - haddr_t eoa; /* The EOA value */ + if (print_filesize) { + h5_stat_t st; /* Stat info call */ + haddr_t eoa; /* The EOA value */ /* Get the file's EOA and EOF */ - if(H5Fget_eoa(fid, &eoa) < 0 || HDstat(fname, &st) < 0) { + if (H5Fget_eoa(fid, &eoa) < 0 || HDstat(fname, &st) < 0) { error_msg("H5Fget_eoa or HDstat\n"); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -365,9 +362,9 @@ main (int argc, const char *argv[]) } /* --increment option */ - if(increment_eoa_eof) { + if (increment_eoa_eof) { /* Set the file's EOA to the maximum of (EOA, EOF) + increment */ - if(H5Fincrement_filesize(fid, increment) < 0) { + if (H5Fincrement_filesize(fid, increment) < 0) { error_msg("H5Fset_eoa\n"); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -375,29 +372,30 @@ main (int argc, const char *argv[]) } /* -m option */ - if(remove_cache_image) { - if(H5Fget_mdc_image_info(fid, &image_addr, &image_len) < 0) { + if (remove_cache_image) { + if (H5Fget_mdc_image_info(fid, &image_addr, &image_len) < 0) { error_msg("H5Fget_mdc_image_info\n"); h5tools_setstatus(EXIT_FAILURE); goto done; } - if(image_addr == HADDR_UNDEF && image_len == 0) + if (image_addr == HADDR_UNDEF && image_len == 0) warn_msg("No cache image in the file\n"); } h5tools_setstatus(EXIT_SUCCESS); done: - if(fname) + if (fname) HDfree(fname); - if(fname_g) + if (fname_g) HDfree(fname_g); - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Pclose(fapl); H5Fclose(fid); - } H5E_END_TRY + } + H5E_END_TRY leave(h5tools_getstatus()); } /* main() */ - diff --git a/tools/src/misc/h5debug.c b/tools/src/misc/h5debug.c index bc7e9a3..ae9ec93 100644 --- a/tools/src/misc/h5debug.c +++ b/tools/src/misc/h5debug.c @@ -21,42 +21,41 @@ * *------------------------------------------------------------------------- */ -#define H5A_FRIEND /*suppress error about including H5Apkg */ -#define H5B2_FRIEND /*suppress error about including H5B2pkg */ -#define H5B2_TESTING /*suppress warning about H5B2 testing funcs*/ -#define H5D_FRIEND /*suppress error about including H5Dpkg */ -#define H5EA_FRIEND /*suppress error about including H5EApkg */ -#define H5EA_TESTING /*suppress warning about H5EA testing funcs*/ -#define H5FA_FRIEND /*suppress error about including H5FApkg */ -#define H5FA_TESTING /*suppress warning about H5FA testing funcs*/ -#define H5F_FRIEND /*suppress error about including H5Fpkg */ -#define H5G_FRIEND /*suppress error about including H5Gpkg */ -#define H5HF_FRIEND /*suppress error about including H5HFpkg */ -#define H5O_FRIEND /*suppress error about including H5Opkg */ -#define H5SM_FRIEND /*suppress error about including H5SMpkg */ - -#include "H5private.h" /* Generic Functions */ -#include "H5Apkg.h" /* Attributes */ -#include "H5B2pkg.h" /* v2 B-trees */ +#define H5A_FRIEND /*suppress error about including H5Apkg */ +#define H5B2_FRIEND /*suppress error about including H5B2pkg */ +#define H5B2_TESTING /*suppress warning about H5B2 testing funcs*/ +#define H5D_FRIEND /*suppress error about including H5Dpkg */ +#define H5EA_FRIEND /*suppress error about including H5EApkg */ +#define H5EA_TESTING /*suppress warning about H5EA testing funcs*/ +#define H5FA_FRIEND /*suppress error about including H5FApkg */ +#define H5FA_TESTING /*suppress warning about H5FA testing funcs*/ +#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5G_FRIEND /*suppress error about including H5Gpkg */ +#define H5HF_FRIEND /*suppress error about including H5HFpkg */ +#define H5O_FRIEND /*suppress error about including H5Opkg */ +#define H5SM_FRIEND /*suppress error about including H5SMpkg */ + +#include "H5private.h" /* Generic Functions */ +#include "H5Apkg.h" /* Attributes */ +#include "H5B2pkg.h" /* v2 B-trees */ #include "H5CXprivate.h" /* API Contexts */ -#include "H5Dpkg.h" /* Datasets */ -#include "H5Eprivate.h" /* Error handling */ -#include "H5EApkg.h" /* Extensible Arrays */ -#include "H5FApkg.h" /* Fixed Arrays */ -#include "H5Fpkg.h" /* File access */ +#include "H5Dpkg.h" /* Datasets */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5EApkg.h" /* Extensible Arrays */ +#include "H5FApkg.h" /* Fixed Arrays */ +#include "H5Fpkg.h" /* File access */ #include "H5FSprivate.h" /* Free space manager */ -#include "H5Gpkg.h" /* Groups */ -#include "H5HFpkg.h" /* Fractal heaps */ +#include "H5Gpkg.h" /* Groups */ +#include "H5HFpkg.h" /* Fractal heaps */ #include "H5HGprivate.h" /* Global Heaps */ -#include "H5Iprivate.h" /* IDs */ -#include "H5Opkg.h" /* Object headers */ -#include "H5SMpkg.h" /* Implicitly shared messages */ +#include "H5Iprivate.h" /* IDs */ +#include "H5Opkg.h" /* Object headers */ +#include "H5SMpkg.h" /* Implicitly shared messages */ /* File drivers */ #include "H5FDfamily.h" -#define VCOL 50 - +#define VCOL 50 /*------------------------------------------------------------------------- * Function: get_H5B2_class @@ -75,10 +74,10 @@ static const H5B2_class_t * get_H5B2_class(const uint8_t *sig) { - H5B2_subid_t subtype = (H5B2_subid_t)sig[H5_SIZEOF_MAGIC + 1]; - const H5B2_class_t *cls = NULL; + H5B2_subid_t subtype = (H5B2_subid_t)sig[H5_SIZEOF_MAGIC + 1]; + const H5B2_class_t *cls = NULL; - switch(subtype) { + switch (subtype) { case H5B2_TEST_ID: cls = H5B2_TEST; break; @@ -136,10 +135,9 @@ get_H5B2_class(const uint8_t *sig) HDfprintf(stderr, "Unknown v2 B-tree subtype %u\n", (unsigned)(subtype)); } /* end switch */ - return(cls); + return (cls); } /* end get_H5B2_class() */ - /*------------------------------------------------------------------------- * Function: get_H5EA_class * @@ -157,10 +155,10 @@ get_H5B2_class(const uint8_t *sig) static const H5EA_class_t * get_H5EA_class(const uint8_t *sig) { - H5EA_cls_id_t clsid = (H5EA_cls_id_t)sig[H5_SIZEOF_MAGIC + 1]; - const H5EA_class_t *cls = NULL; + H5EA_cls_id_t clsid = (H5EA_cls_id_t)sig[H5_SIZEOF_MAGIC + 1]; + const H5EA_class_t *cls = NULL; - switch(clsid) { + switch (clsid) { case H5EA_CLS_TEST_ID: cls = H5EA_CLS_TEST; break; @@ -178,10 +176,9 @@ get_H5EA_class(const uint8_t *sig) HDfprintf(stderr, "Unknown extensible array class %u\n", (unsigned)(clsid)); } /* end switch */ - return(cls); + return (cls); } /* end get_H5EA_class() */ - /*------------------------------------------------------------------------- * Function: get_H5FA_class * @@ -199,10 +196,10 @@ get_H5EA_class(const uint8_t *sig) static const H5FA_class_t * get_H5FA_class(const uint8_t *sig) { - H5FA_cls_id_t clsid = (H5FA_cls_id_t)sig[H5_SIZEOF_MAGIC + 1]; - const H5FA_class_t *cls = NULL; + H5FA_cls_id_t clsid = (H5FA_cls_id_t)sig[H5_SIZEOF_MAGIC + 1]; + const H5FA_class_t *cls = NULL; - switch(clsid) { + switch (clsid) { case H5FA_CLS_TEST_ID: cls = H5FA_CLS_TEST; break; @@ -220,10 +217,9 @@ get_H5FA_class(const uint8_t *sig) HDfprintf(stderr, "Unknown fixed array class %u\n", (unsigned)(clsid)); } /* end switch */ - return(cls); + return (cls); } /* end get_H5FA_class() */ - /*------------------------------------------------------------------------- * Function: main * @@ -241,28 +237,28 @@ get_H5FA_class(const uint8_t *sig) int main(int argc, char *argv[]) { - hid_t fid = H5I_INVALID_HID; + hid_t fid = H5I_INVALID_HID; hid_t fapl = H5I_INVALID_HID; - H5F_t *f; - haddr_t addr = 0; - int extra_count = 0; /* Number of extra arguments */ + H5F_t * f; + haddr_t addr = 0; + int extra_count = 0; /* Number of extra arguments */ haddr_t extra[10]; uint8_t sig[H5F_SIGNATURE_LEN]; size_t u; H5E_auto2_t func; - void *edata; - hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ - herr_t status = SUCCEED; - int exit_value = 0; + void * edata; + hbool_t api_ctx_pushed = FALSE; /* Whether API context pushed */ + herr_t status = SUCCEED; + int exit_value = 0; - if(argc == 1) { + if (argc == 1) { HDfprintf(stderr, "Usage: %s filename [signature-addr [extra]*]\n", argv[0]); exit_value = 1; goto done; } /* end if */ /* Initialize the library */ - if(H5open() < 0) { + if (H5open() < 0) { HDfprintf(stderr, "cannot initialize the library\n"); exit_value = 1; goto done; @@ -275,39 +271,39 @@ main(int argc, char *argv[]) /* * Open the file and get the file descriptor. */ - if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { + if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { HDfprintf(stderr, "cannot create file access property list\n"); exit_value = 1; goto done; } /* end if */ - if(HDstrchr(argv[1], '%')) - if(H5Pset_fapl_family (fapl, (hsize_t)0, H5P_DEFAULT) < 0) { + if (HDstrchr(argv[1], '%')) + if (H5Pset_fapl_family(fapl, (hsize_t)0, H5P_DEFAULT) < 0) { HDfprintf(stderr, "cannot set file access property list\n"); exit_value = 1; goto done; } - if((fid = H5Fopen(argv[1], H5F_ACC_RDONLY, fapl)) < 0) { + if ((fid = H5Fopen(argv[1], H5F_ACC_RDONLY, fapl)) < 0) { HDfprintf(stderr, "cannot open file\n"); exit_value = 1; goto done; } /* end if */ /* Push API context */ - if(H5CX_push() < 0) { + if (H5CX_push() < 0) { HDfprintf(stderr, "cannot set API context\n"); exit_value = 1; goto done; } api_ctx_pushed = TRUE; - if(NULL == (f = (H5F_t *)H5I_object(fid))) { + if (NULL == (f = (H5F_t *)H5I_object(fid))) { HDfprintf(stderr, "cannot obtain H5F_t pointer\n"); exit_value = 2; goto done; } /* end if */ /* Ignore metadata tags while using h5debug */ - if(H5AC_ignore_tags(f) < 0) { + if (H5AC_ignore_tags(f) < 0) { HDfprintf(stderr, "cannot ignore metadata tags\n"); exit_value = 1; goto done; @@ -318,22 +314,23 @@ main(int argc, char *argv[]) */ /* Primary data structure to dump */ - if(argc > 2) + if (argc > 2) addr = (haddr_t)HDstrtoll(argv[2], NULL, 0); /* Extra arguments for primary data structure */ HDmemset(extra, 0, sizeof(extra)); - if(argc > 3) { + if (argc > 3) { /* Number of extra arguments */ extra_count = argc - 3; /* Range check against 'extra' array size */ - if(extra_count > (int)(sizeof(extra) / sizeof(haddr_t))) { - HDfprintf(stderr, "\nWARNING: Only using first %d extra parameters\n\n", (int)(sizeof(extra) / sizeof(haddr_t))); + if (extra_count > (int)(sizeof(extra) / sizeof(haddr_t))) { + HDfprintf(stderr, "\nWARNING: Only using first %d extra parameters\n\n", + (int)(sizeof(extra) / sizeof(haddr_t))); extra_count = (int)(sizeof(extra) / sizeof(haddr_t)); } /* end if */ - for(u = 0; u < (size_t)extra_count; u++) + for (u = 0; u < (size_t)extra_count; u++) extra[u] = (haddr_t)HDstrtoll(argv[u + 3], NULL, 0); } /* end if */ @@ -341,47 +338,45 @@ main(int argc, char *argv[]) * Read the signature at the specified file position. */ HDfprintf(stdout, "Reading signature at address %a (rel)\n", addr); - if(H5F_block_read(f, H5FD_MEM_SUPER, addr, sizeof(sig), sig) < 0) { + if (H5F_block_read(f, H5FD_MEM_SUPER, addr, sizeof(sig), sig) < 0) { HDfprintf(stderr, "cannot read signature\n"); exit_value = 3; goto done; } - if(!HDmemcmp(sig, H5F_SIGNATURE, (size_t)H5F_SIGNATURE_LEN)) { + if (!HDmemcmp(sig, H5F_SIGNATURE, (size_t)H5F_SIGNATURE_LEN)) { /* * Debug the file's super block. */ status = H5F_debug(f, stdout, 0, VCOL); - - } else if(!HDmemcmp(sig, H5HL_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + } + else if (!HDmemcmp(sig, H5HL_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a local heap. */ status = H5HL_debug(f, addr, stdout, 0, VCOL); - } - else if(!HDmemcmp (sig, H5HG_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5HG_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a global heap collection. */ status = H5HG_debug(f, addr, stdout, 0, VCOL); - } - else if(!HDmemcmp(sig, H5G_NODE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5G_NODE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a symbol table node. */ /* Check for extra parameters */ - if(extra_count == 0 || extra[0] == 0) { - HDfprintf(stderr, "\nWarning: Providing the group's local heap address will give more information\n"); + if (extra_count == 0 || extra[0] == 0) { + HDfprintf(stderr, + "\nWarning: Providing the group's local heap address will give more information\n"); HDfprintf(stderr, "Symbol table node usage:\n"); HDfprintf(stderr, "\th5debug <filename> <Symbol table node address> <address of local heap>\n\n"); } /* end if */ status = H5G_node_debug(f, addr, stdout, 0, VCOL, extra[0]); - } - else if(!HDmemcmp(sig, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a B-tree. B-trees are debugged through the B-tree * subclass. The subclass identifier is the byte immediately @@ -391,79 +386,87 @@ main(int argc, char *argv[]) unsigned ndims; uint32_t dim[H5O_LAYOUT_NDIMS]; - switch(subtype) { - case H5B_SNODE_ID: - /* Check for extra parameters */ - if(extra_count == 0 || extra[0] == 0) { - HDfprintf(stderr, "\nWarning: Providing the group's local heap address will give more information\n"); - HDfprintf(stderr, "B-tree symbol table node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <address of local heap>\n\n"); - exit_value = 4; - goto done; - } /* end if */ - - status = H5G_node_debug(f, addr, stdout, 0, VCOL, extra[0]); - break; - - case H5B_CHUNK_ID: - /* Check for extra parameters */ - if(extra_count == 0 || extra[0] == 0) { - HDfprintf(stderr, "ERROR: Need number of dimensions of chunk in order to dump chunk B-tree node\n"); - HDfprintf(stderr, "B-tree chunked storage node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions> <slowest chunk dim>...<fastest chunk dim>\n"); - exit_value = 4; - goto done; - } /* end if */ - - /* Set # of dimensions */ - ndims = (unsigned)extra[0]; - - /* Check for dimension error */ - if(ndims > 9) { - HDfprintf(stderr, "ERROR: Only 9 dimensions support currently (fix h5debug)\n"); - HDfprintf(stderr, "B-tree chunked storage node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions> <slowest chunk dim>...<fastest chunk dim>\n"); - exit_value = 4; - goto done; - } /* end for */ + switch (subtype) { + case H5B_SNODE_ID: + /* Check for extra parameters */ + if (extra_count == 0 || extra[0] == 0) { + HDfprintf( + stderr, + "\nWarning: Providing the group's local heap address will give more information\n"); + HDfprintf(stderr, "B-tree symbol table node usage:\n"); + HDfprintf(stderr, + "\th5debug <filename> <B-tree node address> <address of local heap>\n\n"); + exit_value = 4; + goto done; + } /* end if */ - /* Build array of chunk dimensions */ - for(u = 0; u < ndims; u++) - dim[u] = (uint32_t)extra[u + 1]; + status = H5G_node_debug(f, addr, stdout, 0, VCOL, extra[0]); + break; - /* Check for dimension error */ - for(u = 0; u < ndims; u++) - if(0 == dim[u]) { - HDfprintf(stderr, "ERROR: Chunk dimensions should be >0\n"); + case H5B_CHUNK_ID: + /* Check for extra parameters */ + if (extra_count == 0 || extra[0] == 0) { + HDfprintf( + stderr, + "ERROR: Need number of dimensions of chunk in order to dump chunk B-tree node\n"); HDfprintf(stderr, "B-tree chunked storage node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions> <slowest chunk dim>...<fastest chunk dim>\n"); + HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions> <slowest " + "chunk dim>...<fastest chunk dim>\n"); exit_value = 4; goto done; } /* end if */ - /* Set the last dimension (the element size) to zero */ - dim[ndims] = 0; - - status = H5D_btree_debug(f, addr, stdout, 0, VCOL, ndims, dim); - break; + /* Set # of dimensions */ + ndims = (unsigned)extra[0]; - case H5B_NUM_BTREE_ID: - default: - HDfprintf(stderr, "Unknown v1 B-tree subtype %u\n", (unsigned)(subtype)); - exit_value = 4; - goto done; + /* Check for dimension error */ + if (ndims > 9) { + HDfprintf(stderr, "ERROR: Only 9 dimensions support currently (fix h5debug)\n"); + HDfprintf(stderr, "B-tree chunked storage node usage:\n"); + HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions> <slowest " + "chunk dim>...<fastest chunk dim>\n"); + exit_value = 4; + goto done; + } /* end for */ + + /* Build array of chunk dimensions */ + for (u = 0; u < ndims; u++) + dim[u] = (uint32_t)extra[u + 1]; + + /* Check for dimension error */ + for (u = 0; u < ndims; u++) + if (0 == dim[u]) { + HDfprintf(stderr, "ERROR: Chunk dimensions should be >0\n"); + HDfprintf(stderr, "B-tree chunked storage node usage:\n"); + HDfprintf(stderr, "\th5debug <filename> <B-tree node address> <# of dimensions> " + "<slowest chunk dim>...<fastest chunk dim>\n"); + exit_value = 4; + goto done; + } /* end if */ + + /* Set the last dimension (the element size) to zero */ + dim[ndims] = 0; + + status = H5D_btree_debug(f, addr, stdout, 0, VCOL, ndims, dim); + break; + + case H5B_NUM_BTREE_ID: + default: + HDfprintf(stderr, "Unknown v1 B-tree subtype %u\n", (unsigned)(subtype)); + exit_value = 4; + goto done; } - } - else if(!HDmemcmp(sig, H5B2_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5B2_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a v2 B-tree header. - */ + */ const H5B2_class_t *cls = get_H5B2_class(sig); HDassert(cls); - if((cls == H5D_BT2 || cls == H5D_BT2_FILT) && (extra_count == 0 || extra[0] == 0)) { - HDfprintf(stderr, "ERROR: Need v2 B-tree header address and object header address containing the layout message in order to dump header\n"); + if ((cls == H5D_BT2 || cls == H5D_BT2_FILT) && (extra_count == 0 || extra[0] == 0)) { + HDfprintf(stderr, "ERROR: Need v2 B-tree header address and object header address containing the " + "layout message in order to dump header\n"); HDfprintf(stderr, "v2 B-tree hdr usage:\n"); HDfprintf(stderr, "\th5debug <filename> <v2 B-tree header address> <object header address>\n"); exit_value = 4; @@ -471,9 +474,8 @@ main(int argc, char *argv[]) } /* end if */ status = H5B2__hdr_debug(f, addr, stdout, 0, VCOL, cls, (haddr_t)extra[0]); - } - else if(!HDmemcmp(sig, H5B2_INT_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5B2_INT_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a v2 B-tree internal node. */ @@ -481,28 +483,35 @@ main(int argc, char *argv[]) HDassert(cls); /* Check for enough valid parameters */ - if((cls == H5D_BT2 || cls == H5D_BT2_FILT) && (extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0 || extra[3] == 0)) { - HDfprintf(stderr, "ERROR: Need v2 B-tree header address, the node's number of records, depth, and object header address containing the layout message in order to dump internal node\n"); - HDfprintf(stderr, "NOTE: Leaf nodes are depth 0, the internal nodes above them are depth 1, etc.\n"); + if ((cls == H5D_BT2 || cls == H5D_BT2_FILT) && + (extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0 || extra[3] == 0)) { + HDfprintf(stderr, + "ERROR: Need v2 B-tree header address, the node's number of records, depth, and object " + "header address containing the layout message in order to dump internal node\n"); + HDfprintf(stderr, + "NOTE: Leaf nodes are depth 0, the internal nodes above them are depth 1, etc.\n"); HDfprintf(stderr, "v2 B-tree internal node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <internal node address> <v2 B-tree header address> <number of records> <depth> <object header address>\n"); + HDfprintf(stderr, "\th5debug <filename> <internal node address> <v2 B-tree header address> " + "<number of records> <depth> <object header address>\n"); exit_value = 4; goto done; - } - else if(extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0) { - HDfprintf(stderr, "ERROR: Need v2 B-tree header address and the node's number of records and depth in order to dump internal node\n"); - HDfprintf(stderr, "NOTE: Leaf nodes are depth 0, the internal nodes above them are depth 1, etc.\n"); + else if (extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0) { + HDfprintf(stderr, "ERROR: Need v2 B-tree header address and the node's number of records and " + "depth in order to dump internal node\n"); + HDfprintf(stderr, + "NOTE: Leaf nodes are depth 0, the internal nodes above them are depth 1, etc.\n"); HDfprintf(stderr, "v2 B-tree internal node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <internal node address> <v2 B-tree header address> <number of records> <depth>\n"); + HDfprintf(stderr, "\th5debug <filename> <internal node address> <v2 B-tree header address> " + "<number of records> <depth>\n"); exit_value = 4; goto done; } /* end if */ - status = H5B2__int_debug(f, addr, stdout, 0, VCOL, cls, extra[0], (unsigned)extra[1], (unsigned)extra[2], (haddr_t)extra[3]); - + status = H5B2__int_debug(f, addr, stdout, 0, VCOL, cls, extra[0], (unsigned)extra[1], + (unsigned)extra[2], (haddr_t)extra[3]); } - else if(!HDmemcmp(sig, H5B2_LEAF_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5B2_LEAF_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a v2 B-tree leaf node. */ @@ -510,118 +519,126 @@ main(int argc, char *argv[]) HDassert(cls); /* Check for enough valid parameters */ - if((cls == H5D_BT2 || cls == H5D_BT2_FILT) && (extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0 )) { + if ((cls == H5D_BT2 || cls == H5D_BT2_FILT) && + (extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0)) { - HDfprintf(stderr, "ERROR: Need v2 B-tree header address, number of records, and object header address containing the layout message in order to dump leaf node\n"); + HDfprintf(stderr, "ERROR: Need v2 B-tree header address, number of records, and object header " + "address containing the layout message in order to dump leaf node\n"); HDfprintf(stderr, "v2 B-tree leaf node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <leaf node address> <v2 B-tree header address> <number of records> <object header address>\n"); + HDfprintf(stderr, "\th5debug <filename> <leaf node address> <v2 B-tree header address> <number " + "of records> <object header address>\n"); exit_value = 4; goto done; - } - else if(extra_count == 0 || extra[0] == 0 || extra[1] == 0) { - HDfprintf(stderr, "ERROR: Need v2 B-tree header address and number of records in order to dump leaf node\n"); + else if (extra_count == 0 || extra[0] == 0 || extra[1] == 0) { + HDfprintf( + stderr, + "ERROR: Need v2 B-tree header address and number of records in order to dump leaf node\n"); HDfprintf(stderr, "v2 B-tree leaf node usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <leaf node address> <v2 B-tree header address> <number of records>\n"); + HDfprintf( + stderr, + "\th5debug <filename> <leaf node address> <v2 B-tree header address> <number of records>\n"); exit_value = 4; goto done; } /* end if */ - status = H5B2__leaf_debug(f, addr, stdout, 0, VCOL, cls, extra[0], (unsigned)extra[1], (haddr_t)extra[2]); - + status = + H5B2__leaf_debug(f, addr, stdout, 0, VCOL, cls, extra[0], (unsigned)extra[1], (haddr_t)extra[2]); } - else if(!HDmemcmp(sig, H5HF_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5HF_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fractal heap header. */ status = H5HF_hdr_debug(f, addr, stdout, 0, VCOL); - } - else if(!HDmemcmp(sig, H5HF_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5HF_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fractal heap direct block. */ /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0 || extra[1] == 0) { - HDfprintf(stderr, "ERROR: Need fractal heap header address and size of direct block in order to dump direct block\n"); + if (extra_count == 0 || extra[0] == 0 || extra[1] == 0) { + HDfprintf(stderr, "ERROR: Need fractal heap header address and size of direct block in order to " + "dump direct block\n"); HDfprintf(stderr, "Fractal heap direct block usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <direct block address> <heap header address> <size of direct block>\n"); + HDfprintf( + stderr, + "\th5debug <filename> <direct block address> <heap header address> <size of direct block>\n"); exit_value = 4; goto done; } /* end if */ status = H5HF_dblock_debug(f, addr, stdout, 0, VCOL, extra[0], (size_t)extra[1]); - } - else if(!HDmemcmp(sig, H5HF_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5HF_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fractal heap indirect block. */ /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0 || extra[1] == 0) { - HDfprintf(stderr, "ERROR: Need fractal heap header address and number of rows in order to dump indirect block\n"); + if (extra_count == 0 || extra[0] == 0 || extra[1] == 0) { + HDfprintf(stderr, "ERROR: Need fractal heap header address and number of rows in order to dump " + "indirect block\n"); HDfprintf(stderr, "Fractal heap indirect block usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <indirect block address> <heap header address> <number of rows>\n"); + HDfprintf( + stderr, + "\th5debug <filename> <indirect block address> <heap header address> <number of rows>\n"); exit_value = 4; goto done; } /* end if */ status = H5HF_iblock_debug(f, addr, stdout, 0, VCOL, extra[0], (unsigned)extra[1]); - } - else if(!HDmemcmp(sig, H5FS_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5FS_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a free space header. */ status = H5FS_debug(f, addr, stdout, 0, VCOL); - } - else if(!HDmemcmp(sig, H5FS_SINFO_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5FS_SINFO_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug free space serialized sections. */ /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0 || extra[1] == 0) { - HDfprintf(stderr, "ERROR: Need free space header address and client address in order to dump serialized sections\n"); + if (extra_count == 0 || extra[0] == 0 || extra[1] == 0) { + HDfprintf(stderr, "ERROR: Need free space header address and client address in order to dump " + "serialized sections\n"); HDfprintf(stderr, "Free space serialized sections usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <serialized sections address> <free space header address> <client address>\n"); + HDfprintf(stderr, "\th5debug <filename> <serialized sections address> <free space header " + "address> <client address>\n"); exit_value = 4; goto done; } /* end if */ status = H5FS_sects_debug(f, addr, stdout, 0, VCOL, extra[0], extra[1]); - } - else if(!HDmemcmp(sig, H5SM_TABLE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5SM_TABLE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug shared message master table. */ - status = H5SM_table_debug(f, addr, stdout, 0, VCOL, (unsigned) UFAIL, (unsigned) UFAIL); - + status = H5SM_table_debug(f, addr, stdout, 0, VCOL, (unsigned)UFAIL, (unsigned)UFAIL); } - else if(!HDmemcmp(sig, H5SM_LIST_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5SM_LIST_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug shared message list index. */ /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0) { + if (extra_count == 0 || extra[0] == 0) { HDfprintf(stderr, "ERROR: Need shared message header address in order to shared message list\n"); HDfprintf(stderr, "Shared message list usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <shared message list address> <shared message header address>\n"); + HDfprintf(stderr, + "\th5debug <filename> <shared message list address> <shared message header address>\n"); exit_value = 4; goto done; } /* end if */ status = H5SM_list_debug(f, addr, stdout, 0, VCOL, (haddr_t)extra[0]); - } - else if(!HDmemcmp(sig, H5EA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5EA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug an extensible aray header. */ @@ -629,18 +646,20 @@ main(int argc, char *argv[]) HDassert(cls); /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0) { - HDfprintf(stderr, "ERROR: Need object header address containing the layout message in order to dump header\n"); + if (extra_count == 0 || extra[0] == 0) { + HDfprintf( + stderr, + "ERROR: Need object header address containing the layout message in order to dump header\n"); HDfprintf(stderr, "Extensible array header block usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <Extensible Array header address> <object header address>\n"); + HDfprintf(stderr, + "\th5debug <filename> <Extensible Array header address> <object header address>\n"); exit_value = 4; goto done; } /* end if */ status = H5EA__hdr_debug(f, addr, stdout, 0, VCOL, cls, extra[0]); - } - else if(!HDmemcmp(sig, H5EA_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5EA_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug an extensible aray index block. */ @@ -648,18 +667,20 @@ main(int argc, char *argv[]) HDassert(cls); /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0 || extra[1] == 0) { - HDfprintf(stderr, "ERROR: Need extensible array header address and object header address containing the layout message in order to dump index block\n"); + if (extra_count == 0 || extra[0] == 0 || extra[1] == 0) { + HDfprintf(stderr, "ERROR: Need extensible array header address and object header address " + "containing the layout message in order to dump index block\n"); HDfprintf(stderr, "Extensible array index block usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <index block address> <array header address> <object header address\n"); + HDfprintf( + stderr, + "\th5debug <filename> <index block address> <array header address> <object header address\n"); exit_value = 4; goto done; } /* end if */ status = H5EA__iblock_debug(f, addr, stdout, 0, VCOL, cls, extra[0], extra[1]); - } - else if(!HDmemcmp(sig, H5EA_SBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5EA_SBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug an extensible aray super block. */ @@ -667,18 +688,19 @@ main(int argc, char *argv[]) HDassert(cls); /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0) { - HDfprintf(stderr, "ERROR: Need extensible array header address, super block index and object header address containing the layout message in order to dump super block\n"); + if (extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0) { + HDfprintf(stderr, "ERROR: Need extensible array header address, super block index and object " + "header address containing the layout message in order to dump super block\n"); HDfprintf(stderr, "Extensible array super block usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <super block address> <array header address> <super block index> <object header address>\n"); + HDfprintf(stderr, "\th5debug <filename> <super block address> <array header address> <super " + "block index> <object header address>\n"); exit_value = 4; goto done; } /* end if */ status = H5EA__sblock_debug(f, addr, stdout, 0, VCOL, cls, extra[0], (unsigned)extra[1], extra[2]); - } - else if(!HDmemcmp(sig, H5EA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5EA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug an extensible aray data block. */ @@ -686,18 +708,20 @@ main(int argc, char *argv[]) HDassert(cls); /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0) { - HDfprintf(stderr, "ERROR: Need extensible array header address, # of elements in data block and object header address containing the layout message in order to dump data block\n"); + if (extra_count == 0 || extra[0] == 0 || extra[1] == 0 || extra[2] == 0) { + HDfprintf(stderr, + "ERROR: Need extensible array header address, # of elements in data block and object " + "header address containing the layout message in order to dump data block\n"); HDfprintf(stderr, "Extensible array data block usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <data block address> <array header address> <# of elements in data block> <object header address\n"); + HDfprintf(stderr, "\th5debug <filename> <data block address> <array header address> <# of " + "elements in data block> <object header address\n"); exit_value = 4; goto done; } /* end if */ status = H5EA__dblock_debug(f, addr, stdout, 0, VCOL, cls, extra[0], (size_t)extra[1], extra[2]); - } - else if(!HDmemcmp(sig, H5FA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5FA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fixed array header. */ @@ -705,8 +729,10 @@ main(int argc, char *argv[]) HDassert(cls); /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0) { - HDfprintf(stderr, "ERROR: Need object header address containing the layout message in order to dump header\n"); + if (extra_count == 0 || extra[0] == 0) { + HDfprintf( + stderr, + "ERROR: Need object header address containing the layout message in order to dump header\n"); HDfprintf(stderr, "Fixed array header block usage:\n"); HDfprintf(stderr, "\th5debug <filename> <Fixed Array header address> <object header address>\n"); exit_value = 4; @@ -714,9 +740,8 @@ main(int argc, char *argv[]) } /* end if */ status = H5FA__hdr_debug(f, addr, stdout, 0, VCOL, cls, extra[0]); - } - else if(!HDmemcmp(sig, H5FA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5FA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fixed array data block. */ @@ -724,32 +749,32 @@ main(int argc, char *argv[]) HDassert(cls); /* Check for enough valid parameters */ - if(extra_count == 0 || extra[0] == 0 || extra[1] == 0) { - HDfprintf(stderr, "ERROR: Need fixed array header address and object header address containing the layout message in order to dump data block\n"); + if (extra_count == 0 || extra[0] == 0 || extra[1] == 0) { + HDfprintf(stderr, "ERROR: Need fixed array header address and object header address containing " + "the layout message in order to dump data block\n"); HDfprintf(stderr, "fixed array data block usage:\n"); - HDfprintf(stderr, "\th5debug <filename> <data block address> <array header address> <object header address>\n"); + HDfprintf( + stderr, + "\th5debug <filename> <data block address> <array header address> <object header address>\n"); exit_value = 4; goto done; } /* end if */ status = H5FA__dblock_debug(f, addr, stdout, 0, VCOL, cls, extra[0], extra[1]); - } - else if(!HDmemcmp(sig, H5O_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { + else if (!HDmemcmp(sig, H5O_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug v2 object header (which have signatures). */ status = H5O_debug(f, addr, stdout, 0, VCOL); - } - else if(sig[0] == H5O_VERSION_1) { + else if (sig[0] == H5O_VERSION_1) { /* * This could be a v1 object header. Since they don't have a signature * it's a somewhat "ify" detection. */ status = H5O_debug(f, addr, stdout, 0, VCOL); - } else { /* @@ -774,7 +799,7 @@ main(int argc, char *argv[]) } /* end else */ /* Check for an error when dumping information */ - if(status < 0) { + if (status < 0) { HDfprintf(stderr, "An error occurred!\n"); H5Eprint2(H5E_DEFAULT, stderr); exit_value = 5; @@ -782,14 +807,16 @@ main(int argc, char *argv[]) } /* end if */ done: - if(fapl > 0) H5Pclose(fapl); - if(fid > 0) H5Fclose(fid); + if (fapl > 0) + H5Pclose(fapl); + if (fid > 0) + H5Fclose(fid); /* Pop API context */ - if(api_ctx_pushed) H5CX_pop(); + if (api_ctx_pushed) + H5CX_pop(); H5Eset_auto2(H5E_DEFAULT, func, edata); return exit_value; } /* main() */ - diff --git a/tools/src/misc/h5mkgrp.c b/tools/src/misc/h5mkgrp.c index 2046373..c70b334 100644 --- a/tools/src/misc/h5mkgrp.c +++ b/tools/src/misc/h5mkgrp.c @@ -11,7 +11,6 @@ * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - #include "H5private.h" #include "h5tools.h" #include "h5tools_utils.h" @@ -23,30 +22,24 @@ int d_status = EXIT_SUCCESS; /* command-line options: short and long-named parameters */ -static const char *s_opts = "hlpvV"; -static struct long_options l_opts[] = { - { "help", no_arg, 'h' }, - { "latest", no_arg, 'l' }, - { "parents", no_arg, 'p' }, - { "verbose", no_arg, 'v' }, - { "version", no_arg, 'V' }, - { NULL, 0, '\0' } -}; +static const char * s_opts = "hlpvV"; +static struct long_options l_opts[] = {{"help", no_arg, 'h'}, {"latest", no_arg, 'l'}, + {"parents", no_arg, 'p'}, {"verbose", no_arg, 'v'}, + {"version", no_arg, 'V'}, {NULL, 0, '\0'}}; /* Command line parameter settings */ typedef struct mkgrp_opt_t { - char *fname; /* File name to operate on */ - hbool_t latest; /* Whether file should use latest format versions */ - hbool_t verbose; /* Whether output should be verbose */ - hbool_t parents; /* Whether to create intermediate groups */ - size_t ngroups; /* Number of groups to create */ - char **groups; /* Pointer to array of group names */ - hid_t fapl_id; /* fapl to use when opening the file */ + char * fname; /* File name to operate on */ + hbool_t latest; /* Whether file should use latest format versions */ + hbool_t verbose; /* Whether output should be verbose */ + hbool_t parents; /* Whether to create intermediate groups */ + size_t ngroups; /* Number of groups to create */ + char ** groups; /* Pointer to array of group names */ + hid_t fapl_id; /* fapl to use when opening the file */ } mkgrp_opt_t; -mkgrp_opt_t params_g; /* Command line parameter settings */ +mkgrp_opt_t params_g; /* Command line parameter settings */ - /*------------------------------------------------------------------------- * Function: leave * @@ -78,7 +71,6 @@ leave(int ret) HDexit(ret); } /* end leave() */ - /*------------------------------------------------------------------------- * Function: usage * @@ -97,14 +89,15 @@ usage(const char *prog) PRINTSTREAM(rawoutstream, "usage: %s [OPTIONS] FILE GROUP...\n", prog); PRINTVALSTREAM(rawoutstream, " OPTIONS\n"); PRINTVALSTREAM(rawoutstream, " -h, --help Print a usage message and exit\n"); - PRINTVALSTREAM(rawoutstream, " -l, --latest Use latest version of file format to create groups\n"); - PRINTVALSTREAM(rawoutstream, " -p, --parents No error if existing, make parent groups as needed\n"); + PRINTVALSTREAM(rawoutstream, + " -l, --latest Use latest version of file format to create groups\n"); + PRINTVALSTREAM(rawoutstream, + " -p, --parents No error if existing, make parent groups as needed\n"); PRINTVALSTREAM(rawoutstream, " -v, --verbose Print information about OBJECTS and OPTIONS\n"); PRINTVALSTREAM(rawoutstream, " -V, --version Print version number and exit\n"); PRINTVALSTREAM(rawoutstream, "\n"); } /* end usage() */ - /*------------------------------------------------------------------------- * Function: parse_command_line * @@ -121,18 +114,18 @@ usage(const char *prog) static int parse_command_line(int argc, const char *argv[], mkgrp_opt_t *options) { - int opt; /* Option from command line */ - size_t curr_group; /* Current group name to copy */ + int opt; /* Option from command line */ + size_t curr_group; /* Current group name to copy */ /* Check for empty command line */ - if(argc == 1) { + if (argc == 1) { usage(h5tools_getprogname()); leave(EXIT_SUCCESS); } /* Parse command line options */ - while((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { - switch((char)opt) { + while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { + switch ((char)opt) { /* Display 'help' */ case 'h': usage(h5tools_getprogname()); @@ -165,10 +158,10 @@ parse_command_line(int argc, const char *argv[], mkgrp_opt_t *options) usage(h5tools_getprogname()); leave(EXIT_FAILURE); } /* end switch */ - } /* end while */ + } /* end while */ /* Check for file name to be processed */ - if(argc <= opt_ind) { + if (argc <= opt_ind) { error_msg("missing file name\n"); usage(h5tools_getprogname()); leave(EXIT_FAILURE); @@ -179,7 +172,7 @@ parse_command_line(int argc, const char *argv[], mkgrp_opt_t *options) opt_ind++; /* Check for group(s) to be created */ - if(argc <= opt_ind) { + if (argc <= opt_ind) { error_msg("missing group name(s)\n"); usage(h5tools_getprogname()); leave(EXIT_FAILURE); @@ -187,11 +180,11 @@ parse_command_line(int argc, const char *argv[], mkgrp_opt_t *options) /* Allocate space for the group name pointers */ options->ngroups = (size_t)(argc - opt_ind); - options->groups = (char **)HDmalloc(options->ngroups * sizeof(char *)); + options->groups = (char **)HDmalloc(options->ngroups * sizeof(char *)); /* Retrieve the group names */ curr_group = 0; - while(opt_ind < argc) { + while (opt_ind < argc) { options->groups[curr_group] = HDstrdup(argv[opt_ind]); curr_group++; opt_ind++; @@ -200,7 +193,6 @@ parse_command_line(int argc, const char *argv[], mkgrp_opt_t *options) return 0; } /* parse_command_line() */ - /*------------------------------------------------------------------------- * Function: main * @@ -213,9 +205,9 @@ parse_command_line(int argc, const char *argv[], mkgrp_opt_t *options) int main(int argc, const char *argv[]) { - hid_t fid = H5I_INVALID_HID; /* HDF5 file ID */ - hid_t lcpl_id = H5I_INVALID_HID; /* Link creation property list ID */ - size_t curr_group; /* Current group to create */ + hid_t fid = H5I_INVALID_HID; /* HDF5 file ID */ + hid_t lcpl_id = H5I_INVALID_HID; /* Link creation property list ID */ + size_t curr_group; /* Current group to create */ h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); @@ -227,13 +219,13 @@ main(int argc, const char *argv[]) HDmemset(¶ms_g, 0, sizeof(params_g)); /* Create file access property list */ - if((params_g.fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) { + if ((params_g.fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) { error_msg("Could not create file access property list\n"); leave(EXIT_FAILURE); } /* Parse command line */ - if(parse_command_line(argc, argv, ¶ms_g) < 0) { + if (parse_command_line(argc, argv, ¶ms_g) < 0) { error_msg("unable to parse command line arguments\n"); leave(EXIT_FAILURE); } @@ -242,15 +234,15 @@ main(int argc, const char *argv[]) h5tools_error_report(); /* Check for creating groups with new format version */ - if(params_g.latest) { + if (params_g.latest) { /* Set the "use the latest version of the format" bounds */ - if(H5Pset_libver_bounds(params_g.fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) { + if (H5Pset_libver_bounds(params_g.fapl_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) { error_msg("Could not set property for using latest version of the format\n"); leave(EXIT_FAILURE); } /* Display some output if requested */ - if(params_g.verbose) + if (params_g.verbose) HDprintf("%s: Creating groups with latest version of the format\n", h5tools_getprogname()); } @@ -259,67 +251,66 @@ main(int argc, const char *argv[]) /* If we couldn't open an existing file, try creating file */ /* (use "EXCL" instead of "TRUNC", so we don't blow away existing non-HDF5 file) */ - if(fid < 0) + if (fid < 0) fid = H5Fcreate(params_g.fname, H5F_ACC_EXCL, H5P_DEFAULT, params_g.fapl_id); /* Test for error in opening file */ - if(fid < 0) { + if (fid < 0) { error_msg("Could not open output file '%s'\n", params_g.fname); leave(EXIT_FAILURE); } /* Create link creation property list */ - if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) { + if ((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) { error_msg("Could not create link creation property list\n"); leave(EXIT_FAILURE); } /* Check for creating intermediate groups */ - if(params_g.parents) { + if (params_g.parents) { /* Set the intermediate group creation property */ - if(H5Pset_create_intermediate_group(lcpl_id, TRUE) < 0) { + if (H5Pset_create_intermediate_group(lcpl_id, TRUE) < 0) { error_msg("Could not set property for creating parent groups\n"); leave(EXIT_FAILURE); } /* Display some output if requested */ - if(params_g.verbose) + if (params_g.verbose) HDprintf("%s: Creating parent groups\n", h5tools_getprogname()); } /* Loop over creating requested groups */ - for(curr_group = 0; curr_group < params_g.ngroups; curr_group++) { - hid_t gid; /* Group ID */ + for (curr_group = 0; curr_group < params_g.ngroups; curr_group++) { + hid_t gid; /* Group ID */ /* Attempt to create a group */ - if((gid = H5Gcreate2(fid, params_g.groups[curr_group], lcpl_id, H5P_DEFAULT, H5P_DEFAULT)) < 0) { + if ((gid = H5Gcreate2(fid, params_g.groups[curr_group], lcpl_id, H5P_DEFAULT, H5P_DEFAULT)) < 0) { error_msg("Could not create group '%s'\n", params_g.groups[curr_group]); leave(EXIT_FAILURE); } /* Close the group */ - if(H5Gclose(gid) < 0) { + if (H5Gclose(gid) < 0) { error_msg("Could not close group '%s'??\n", params_g.groups[curr_group]); leave(EXIT_FAILURE); } /* Display some output if requested */ - if(params_g.verbose) + if (params_g.verbose) HDprintf("%s: created group '%s'\n", h5tools_getprogname(), params_g.groups[curr_group]); } /* end for */ /* Close link creation property list */ - if(H5Pclose(lcpl_id) < 0) { + if (H5Pclose(lcpl_id) < 0) { error_msg("Could not close link creation property list\n"); leave(EXIT_FAILURE); } /* Close file */ - if(H5Fclose(fid) < 0) { + if (H5Fclose(fid) < 0) { error_msg("Could not close output file '%s'??\n", params_g.fname); leave(EXIT_FAILURE); } leave(EXIT_SUCCESS); } /* end main() */ - diff --git a/tools/src/misc/h5repart.c b/tools/src/misc/h5repart.c index 371cf2c..6424384 100644 --- a/tools/src/misc/h5repart.c +++ b/tools/src/misc/h5repart.c @@ -26,16 +26,15 @@ #include "hdf5.h" #include "H5private.h" -#define NAMELEN 4096 -#define GB *1024*1024*1024 +#define NAMELEN 4096 +#define GB *1024 * 1024 * 1024 /* Make these 2 private properties(defined in H5Fprivate.h) available to h5repart. * The first one updates the member file size in the superblock. The second one * change file driver from family to a single file driver. */ -#define H5F_ACS_FAMILY_NEWSIZE_NAME "family_newsize" -#define H5F_ACS_FAMILY_TO_SINGLE_NAME "family_to_single" - +#define H5F_ACS_FAMILY_NEWSIZE_NAME "family_newsize" +#define H5F_ACS_FAMILY_TO_SINGLE_NAME "family_to_single" /*------------------------------------------------------------------------- * Function: usage @@ -52,26 +51,26 @@ *------------------------------------------------------------------------- */ static void -usage (const char *progname) +usage(const char *progname) { HDfprintf(stderr, "usage: %s [-v] [-V] [-[b|m] N[g|m|k]] [-family_to_sec2|-family_to_single] SRC DST\n", - progname); + progname); HDfprintf(stderr, " -v Produce verbose output\n"); HDfprintf(stderr, " -V Print a version number and exit\n"); HDfprintf(stderr, " -b N The I/O block size, defaults to 1kB\n"); HDfprintf(stderr, " -m N The destination member size or 1GB\n"); HDfprintf(stderr, " -family_to_sec2 Deprecated version of -family_to_single (below)\n"); - HDfprintf(stderr, " -family_to_single Change file driver from family to the default single-file VFD (windows or sec2)\n"); + HDfprintf(stderr, " -family_to_single Change file driver from family to the default single-file VFD " + "(windows or sec2)\n"); HDfprintf(stderr, " SRC The name of the source file\n"); HDfprintf(stderr, " DST The name of the destination files\n"); HDfprintf(stderr, "Sizes may be suffixed with `g' for GB, `m' for MB or " - "`k' for kB.\n"); + "`k' for kB.\n"); HDfprintf(stderr, "File family names include an integer printf " - "format such as `%%d'\n"); - HDexit (EXIT_FAILURE); + "format such as `%%d'\n"); + HDexit(EXIT_FAILURE); } - /*------------------------------------------------------------------------- * Function: get_size * @@ -95,48 +94,47 @@ usage (const char *progname) *------------------------------------------------------------------------- */ static off_t -get_size (const char *progname, int *argno, int argc, char *argv[]) +get_size(const char *progname, int *argno, int argc, char *argv[]) { - off_t retval=-1; - char *suffix; + off_t retval = -1; + char *suffix; - if (isdigit ((int)(argv[*argno][2]))) { - retval = HDstrtol(argv[*argno]+2, &suffix, 10); + if (isdigit((int)(argv[*argno][2]))) { + retval = HDstrtol(argv[*argno] + 2, &suffix, 10); (*argno)++; } - else if (argv[*argno][2] || *argno+1>=argc) { - usage (progname); + else if (argv[*argno][2] || *argno + 1 >= argc) { + usage(progname); } else { - retval = HDstrtol(argv[*argno+1], &suffix, 0); - if (suffix == argv[*argno+1]) - usage (progname); + retval = HDstrtol(argv[*argno + 1], &suffix, 0); + if (suffix == argv[*argno + 1]) + usage(progname); *argno += 2; } if (suffix && suffix[0] && !suffix[1]) { switch (*suffix) { - case 'G': - case 'g': - retval *= 1024 * 1024 * 1024; - break; - case 'M': - case 'm': - retval *= 1024 * 1024; - break; - case 'k': - retval *= 1024; - break; - default: - usage(progname); + case 'G': + case 'g': + retval *= 1024 * 1024 * 1024; + break; + case 'M': + case 'm': + retval *= 1024 * 1024; + break; + case 'k': + retval *= 1024; + break; + default: + usage(progname); } } else if (suffix && suffix[0]) { - usage (progname); + usage(progname); } return retval; } - /*------------------------------------------------------------------------- * Function: main * @@ -154,47 +152,47 @@ get_size (const char *progname, int *argno, int argc, char *argv[]) *------------------------------------------------------------------------- */ int -main (int argc, char *argv[]) +main(int argc, char *argv[]) { - const char *prog_name; /*program name */ - size_t blk_size=1024; /*size of each I/O block */ - char *buf=NULL; /*I/O block buffer */ - size_t n, i; /*counters */ - ssize_t nio; /*I/O return value */ - int argno=1; /*program argument number */ - int src, dst=-1; /*source & destination files */ - int need_seek=FALSE; /*destination needs to seek? */ - int need_write; /*data needs to be written? */ - h5_stat_t sb; /*temporary file stat buffer */ - - int verbose=FALSE; /*display file names? */ - - const char *src_gen_name; /*general source name */ - char *src_name=NULL; /*source member name */ - - int src_is_family; /*is source name a family name? */ - int src_membno=0; /*source member number */ - - const char *dst_gen_name; /*general destination name */ - char *dst_name=NULL; /*destination member name */ - int dst_is_family; /*is dst name a family name? */ - int dst_membno=0; /*destination member number */ - - off_t left_overs=0; /*amount of zeros left over */ - off_t src_offset=0; /*offset in source member */ - off_t dst_offset=0; /*offset in destination member */ - off_t src_size; /*source logical member size */ - off_t src_act_size; /*source actual member size */ - off_t dst_size=1 GB; /*destination logical memb size */ - hid_t fapl; /*file access property list */ - hid_t file; - hsize_t hdsize; /*destination logical memb size */ - hbool_t family_to_single = FALSE; /*change family to single file driver? */ + const char *prog_name; /*program name */ + size_t blk_size = 1024; /*size of each I/O block */ + char * buf = NULL; /*I/O block buffer */ + size_t n, i; /*counters */ + ssize_t nio; /*I/O return value */ + int argno = 1; /*program argument number */ + int src, dst = -1; /*source & destination files */ + int need_seek = FALSE; /*destination needs to seek? */ + int need_write; /*data needs to be written? */ + h5_stat_t sb; /*temporary file stat buffer */ + + int verbose = FALSE; /*display file names? */ + + const char *src_gen_name; /*general source name */ + char * src_name = NULL; /*source member name */ + + int src_is_family; /*is source name a family name? */ + int src_membno = 0; /*source member number */ + + const char *dst_gen_name; /*general destination name */ + char * dst_name = NULL; /*destination member name */ + int dst_is_family; /*is dst name a family name? */ + int dst_membno = 0; /*destination member number */ + + off_t left_overs = 0; /*amount of zeros left over */ + off_t src_offset = 0; /*offset in source member */ + off_t dst_offset = 0; /*offset in destination member */ + off_t src_size; /*source logical member size */ + off_t src_act_size; /*source actual member size */ + off_t dst_size = 1 GB; /*destination logical memb size */ + hid_t fapl; /*file access property list */ + hid_t file; + hsize_t hdsize; /*destination logical memb size */ + hbool_t family_to_single = FALSE; /*change family to single file driver? */ /* * Get the program name from argv[0]. Use only the last component. */ - if ((prog_name = HDstrrchr (argv[0], '/'))) + if ((prog_name = HDstrrchr(argv[0], '/'))) prog_name++; else prog_name = argv[0]; @@ -206,28 +204,35 @@ main (int argc, char *argv[]) if (!HDstrcmp(argv[argno], "-v")) { verbose = TRUE; argno++; - } else if (!HDstrcmp(argv[argno], "-V")) { - HDprintf("This is %s version %u.%u release %u\n", prog_name, H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE); + } + else if (!HDstrcmp(argv[argno], "-V")) { + HDprintf("This is %s version %u.%u release %u\n", prog_name, H5_VERS_MAJOR, H5_VERS_MINOR, + H5_VERS_RELEASE); HDexit(EXIT_SUCCESS); - } else if (!HDstrcmp(argv[argno], "-family_to_sec2")) { + } + else if (!HDstrcmp(argv[argno], "-family_to_sec2")) { family_to_single = TRUE; argno++; - } else if (!HDstrcmp(argv[argno], "-family_to_single")) { + } + else if (!HDstrcmp(argv[argno], "-family_to_single")) { family_to_single = TRUE; argno++; - } else if ('b' == argv[argno][1]) { - blk_size = (size_t) get_size(prog_name, &argno, argc, argv); - } else if ('m' == argv[argno][1]) { + } + else if ('b' == argv[argno][1]) { + blk_size = (size_t)get_size(prog_name, &argno, argc, argv); + } + else if ('m' == argv[argno][1]) { dst_size = get_size(prog_name, &argno, argc, argv); - } else { + } + else { usage(prog_name); } /* end if */ - } /* end while */ + } /* end while */ /* allocate names */ - if(NULL == (src_name = (char *)HDcalloc((size_t)NAMELEN, sizeof(char)))) + if (NULL == (src_name = (char *)HDcalloc((size_t)NAMELEN, sizeof(char)))) HDexit(EXIT_FAILURE); - if(NULL == (dst_name = (char *)HDcalloc((size_t)NAMELEN, sizeof(char)))) + if (NULL == (dst_name = (char *)HDcalloc((size_t)NAMELEN, sizeof(char)))) HDexit(EXIT_FAILURE); /* @@ -238,7 +243,7 @@ main (int argc, char *argv[]) usage(prog_name); src_gen_name = argv[argno++]; HDsprintf(src_name, src_gen_name, src_membno); - src_is_family = strcmp (src_name, src_gen_name); + src_is_family = strcmp(src_name, src_gen_name); if ((src = HDopen(src_name, O_RDONLY)) < 0) { HDperror(src_name); @@ -256,13 +261,13 @@ main (int argc, char *argv[]) /* * Get the name for the destination file and open the first member. */ - if (argno>=argc) - usage (prog_name); + if (argno >= argc) + usage(prog_name); dst_gen_name = argv[argno++]; HDsprintf(dst_name, dst_gen_name, dst_membno); dst_is_family = HDstrcmp(dst_name, dst_gen_name); - if ((dst = HDopen(dst_name, O_RDWR|O_CREAT|O_TRUNC, H5_POSIX_CREATE_MODE_RW)) < 0) { + if ((dst = HDopen(dst_name, O_RDWR | O_CREAT | O_TRUNC, H5_POSIX_CREATE_MODE_RW)) < 0) { HDperror(dst_name); HDexit(EXIT_FAILURE); } @@ -271,32 +276,32 @@ main (int argc, char *argv[]) /* No more arguments */ if (argno < argc) - usage (prog_name); + usage(prog_name); /* Now the real work, split the file */ buf = (char *)HDmalloc(blk_size); - while (src_offset<src_size) { + while (src_offset < src_size) { - /* Read a block. The amount to read is the minimum of: - * 1. The I/O block size - * 2. What's left to write in the destination member - * 3. Left over zeros or what's left in the source member. - */ + /* Read a block. The amount to read is the minimum of: + * 1. The I/O block size + * 2. What's left to write in the destination member + * 3. Left over zeros or what's left in the source member. + */ n = blk_size; if (dst_is_family) - n = (size_t)MIN((off_t)n, dst_size-dst_offset); + n = (size_t)MIN((off_t)n, dst_size - dst_offset); if (left_overs) { - n = (size_t)MIN((off_t)n, left_overs); - left_overs = left_overs - (off_t) n; + n = (size_t)MIN((off_t)n, left_overs); + left_overs = left_overs - (off_t)n; need_write = FALSE; } else if (src_offset < src_act_size) { - n = (size_t)MIN((off_t)n, src_act_size-src_offset); + n = (size_t)MIN((off_t)n, src_act_size - src_offset); if ((nio = HDread(src, buf, n)) < 0) { HDperror("read"); HDexit(EXIT_FAILURE); } - else if ((size_t) nio != n) { + else if ((size_t)nio != n) { HDfprintf(stderr, "%s: short read\n", src_name); HDexit(EXIT_FAILURE); } @@ -307,18 +312,18 @@ main (int argc, char *argv[]) need_write = (i < n); } else { - n = 0; + n = 0; left_overs = src_size - src_act_size; need_write = FALSE; } - /* - * If the block contains non-zero data then write it to the - * destination, otherwise just remember that we'll have to do a seek - * later in the destination when we finally get non-zero data. - */ + /* + * If the block contains non-zero data then write it to the + * destination, otherwise just remember that we'll have to do a seek + * later in the destination when we finally get non-zero data. + */ if (need_write) { - if (need_seek && HDlseek (dst, dst_offset, SEEK_SET) < 0) { + if (need_seek && HDlseek(dst, dst_offset, SEEK_SET) < 0) { HDperror("HDlseek"); HDexit(EXIT_FAILURE); } @@ -326,7 +331,7 @@ main (int argc, char *argv[]) HDperror("write"); HDexit(EXIT_FAILURE); } - else if ((size_t) nio != n) { + else if ((size_t)nio != n) { HDfprintf(stderr, "%s: short write\n", dst_name); HDexit(EXIT_FAILURE); } @@ -336,64 +341,64 @@ main (int argc, char *argv[]) need_seek = TRUE; } - /* - * Update the source offset and open the next source family member if - * necessary. The source stream ends at the first member which - * cannot be opened because it doesn't exist. At the end of the - * source stream, update the destination offset and break out of the - * loop. The destination offset must be updated so we can fix - * trailing holes. - */ - src_offset = src_offset + (off_t) n; + /* + * Update the source offset and open the next source family member if + * necessary. The source stream ends at the first member which + * cannot be opened because it doesn't exist. At the end of the + * source stream, update the destination offset and break out of the + * loop. The destination offset must be updated so we can fix + * trailing holes. + */ + src_offset = src_offset + (off_t)n; if (src_offset == src_act_size) { HDclose(src); if (!src_is_family) { - dst_offset = dst_offset + (off_t) n; + dst_offset = dst_offset + (off_t)n; break; } HDsprintf(src_name, src_gen_name, ++src_membno); if ((src = HDopen(src_name, O_RDONLY)) < 0 && ENOENT == errno) { - dst_offset = dst_offset + (off_t) n; + dst_offset = dst_offset + (off_t)n; break; } else if (src < 0) { HDperror(src_name); HDexit(EXIT_FAILURE); } - if (HDfstat (src, &sb) < 0) { + if (HDfstat(src, &sb) < 0) { HDperror("fstat"); HDexit(EXIT_FAILURE); } src_act_size = sb.st_size; if (src_act_size > src_size) { - HDfprintf(stderr, "%s: member truncated to %lu bytes\n", src_name, (unsigned long) src_size); + HDfprintf(stderr, "%s: member truncated to %lu bytes\n", src_name, (unsigned long)src_size); } src_offset = 0; if (verbose) HDfprintf(stderr, "< %s\n", src_name); } - /* - * Update the destination offset, opening a new member if one will be - * needed. The first member is extended to the logical member size - * but other members might be smaller if they end with a hole. - */ - dst_offset = dst_offset + (off_t) n; + /* + * Update the destination offset, opening a new member if one will be + * needed. The first member is extended to the logical member size + * but other members might be smaller if they end with a hole. + */ + dst_offset = dst_offset + (off_t)n; if (dst_is_family && dst_offset == dst_size) { if (0 == dst_membno) { - if (HDlseek (dst, dst_size-1, SEEK_SET) < 0) { + if (HDlseek(dst, dst_size - 1, SEEK_SET) < 0) { HDperror("HDHDlseek"); HDexit(EXIT_FAILURE); } - if (HDread (dst, buf, 1) < 0) { + if (HDread(dst, buf, 1) < 0) { HDperror("read"); HDexit(EXIT_FAILURE); } - if (HDlseek (dst, dst_size-1, SEEK_SET) < 0) { + if (HDlseek(dst, dst_size - 1, SEEK_SET) < 0) { HDperror("HDlseek"); HDexit(EXIT_FAILURE); } - if (HDwrite (dst, buf, 1) < 0) { + if (HDwrite(dst, buf, 1) < 0) { HDperror("write"); HDexit(EXIT_FAILURE); } @@ -405,7 +410,7 @@ main (int argc, char *argv[]) HDexit(EXIT_FAILURE); } dst_offset = 0; - need_seek = FALSE; + need_seek = FALSE; if (verbose) HDfprintf(stderr, "> %s\n", dst_name); } @@ -417,56 +422,56 @@ main (int argc, char *argv[]) * family has been truncated. */ if (need_seek) { - if (HDlseek (dst, dst_offset-1, SEEK_SET)<0) { - HDperror ("HDlseek"); - HDexit (EXIT_FAILURE); + if (HDlseek(dst, dst_offset - 1, SEEK_SET) < 0) { + HDperror("HDlseek"); + HDexit(EXIT_FAILURE); } - if (HDread (dst, buf, 1)<0) { - HDperror ("read"); - HDexit (EXIT_FAILURE); + if (HDread(dst, buf, 1) < 0) { + HDperror("read"); + HDexit(EXIT_FAILURE); } - if (HDlseek (dst, dst_offset-1, SEEK_SET)<0) { - HDperror ("HDlseek"); - HDexit (EXIT_FAILURE); + if (HDlseek(dst, dst_offset - 1, SEEK_SET) < 0) { + HDperror("HDlseek"); + HDexit(EXIT_FAILURE); } - if (HDwrite (dst, buf, 1)<0) { - HDperror ("write"); - HDexit (EXIT_FAILURE); + if (HDwrite(dst, buf, 1) < 0) { + HDperror("write"); + HDexit(EXIT_FAILURE); } } - HDclose (dst); + HDclose(dst); /* Modify family driver information saved in superblock through private property. * These private properties are for this tool only. */ - if ((fapl=H5Pcreate(H5P_FILE_ACCESS)) < 0) { - HDperror ("H5Pcreate"); - HDexit (EXIT_FAILURE); + if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) { + HDperror("H5Pcreate"); + HDexit(EXIT_FAILURE); } - if(family_to_single) { + if (family_to_single) { /* The user wants to change file driver from family to a single-file VFD. * Open the file with the sec2, windows, etc. driver. This property signals * the library to ignore the family driver information saved in the superblock. */ - if(H5Pset(fapl, H5F_ACS_FAMILY_TO_SINGLE_NAME, &family_to_single) < 0) { - HDperror ("H5Pset"); - HDexit (EXIT_FAILURE); + if (H5Pset(fapl, H5F_ACS_FAMILY_TO_SINGLE_NAME, &family_to_single) < 0) { + HDperror("H5Pset"); + HDexit(EXIT_FAILURE); } } else { /* Modify family size saved in superblock through private property. It signals * library to save the new member size(specified in command line) in superblock. * This private property is for this tool only. */ - if(H5Pset_fapl_family(fapl, H5F_FAMILY_DEFAULT, H5P_DEFAULT) < 0) { - HDperror ("H5Pset_fapl_family"); - HDexit (EXIT_FAILURE); + if (H5Pset_fapl_family(fapl, H5F_FAMILY_DEFAULT, H5P_DEFAULT) < 0) { + HDperror("H5Pset_fapl_family"); + HDexit(EXIT_FAILURE); } /* Set the property of the new member size as hsize_t */ hdsize = (hsize_t)dst_size; - if(H5Pset(fapl, H5F_ACS_FAMILY_NEWSIZE_NAME, &hdsize) < 0) { - HDperror ("H5Pset"); - HDexit (EXIT_FAILURE); + if (H5Pset(fapl, H5F_ACS_FAMILY_NEWSIZE_NAME, &hdsize) < 0) { + HDperror("H5Pset"); + HDexit(EXIT_FAILURE); } } @@ -478,18 +483,17 @@ main (int argc, char *argv[]) * file and the new file can only be a single file, reopen the new file should fail. * There's nothing to do in this case. */ - H5E_BEGIN_TRY { - file = H5Fopen(dst_gen_name, H5F_ACC_RDWR, fapl); - } H5E_END_TRY; + H5E_BEGIN_TRY { file = H5Fopen(dst_gen_name, H5F_ACC_RDWR, fapl); } + H5E_END_TRY; - if(file >= 0) { - if(H5Fclose(file) < 0) { + if (file >= 0) { + if (H5Fclose(file) < 0) { HDperror("H5Fclose"); HDexit(EXIT_FAILURE); } /* end if */ - } /* end if */ + } /* end if */ - if(H5Pclose(fapl) < 0) { + if (H5Pclose(fapl) < 0) { HDperror("H5Pclose"); HDexit(EXIT_FAILURE); } /* end if */ |