Merge pull request #2476 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:tools_vol_update to tools_vol_update

* commit 'f5cb547825e462c3299b6f41d03a71aa6faef950': (29 commits)
  Minor renaming in h5dump (addr --> token)
  Correct macro check
  Add extensive warnings to tools executables
  Reorg comments
  Correct warning flag form
  Because of tools macro, this needs to be a warning
  unused set-variable in macro
  Fix Werror issues in JNI and tools
  TRILAB-192 fix JNI shadow warning
  TRILAB-192 restrict extensive warnings to libraries
  TRILAB-24 use CHECK_STRUCT_HAS_MEMBER
  TRILAB-192 add release note
  TRILAB-192 Identify warnings that fail as errors
  Correct failure when allocation tracking are disabled.
  Update the MANIFEST for the autoconf/cmake shared warnings files.
  Correct syntax
  Update CMake compiler flags to use same set of warnings
  Revise API for H5get_alloc_stats() to take a struct instead of separate values.
  Allow use of INTEL icl/icl++ for clang
  Move the GNU warnings configuration under config/gnu-warnings/ and trim the filename prefixes.  Update config/gnu-flags to suit.
  ...

10 files changed, 52 insertions, 30 deletions

diff --git a/tools/src/h5copy/CMakeLists.txt b/tools/src/h5copy/CMakeLists.txt
index 29888f2..8f230a0 100644
--- a/tools/src/h5copy/CMakeLists.txt
+++ b/tools/src/h5copy/CMakeLists.txt
@@ -7,6 +7,7 @@ project (HDF5_TOOLS_SRC_H5COPY C)
 if (NOT ONLY_SHARED_LIBS)
   add_executable (h5copy ${HDF5_TOOLS_SRC_H5COPY_SOURCE_DIR}/h5copy.c)
   target_include_directories (h5copy PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5copy PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5copy STATIC)
   target_link_libraries (h5copy PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5copy PROPERTIES FOLDER tools)
@@ -18,6 +19,7 @@ endif ()
 if (BUILD_SHARED_LIBS)
   add_executable (h5copy-shared ${HDF5_TOOLS_SRC_H5COPY_SOURCE_DIR}/h5copy.c)
   target_include_directories (h5copy-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5copy-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5copy-shared SHARED)
   target_link_libraries (h5copy-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5copy-shared PROPERTIES FOLDER tools)
diff --git a/tools/src/h5diff/CMakeLists.txt b/tools/src/h5diff/CMakeLists.txt
index 93e99cf..eec7246 100644
--- a/tools/src/h5diff/CMakeLists.txt
+++ b/tools/src/h5diff/CMakeLists.txt
@@ -10,6 +10,7 @@ if (NOT ONLY_SHARED_LIBS)
       ${HDF5_TOOLS_SRC_H5DIFF_SOURCE_DIR}/h5diff_main.c
   )
   target_include_directories (h5diff PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5diff PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   #target_compile_definitions (h5diff PRIVATE H5_TOOLS_DEBUG)
   TARGET_C_PROPERTIES (h5diff STATIC)
   target_link_libraries (h5diff PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
@@ -24,6 +25,7 @@ if (BUILD_SHARED_LIBS)
       ${HDF5_TOOLS_SRC_H5DIFF_SOURCE_DIR}/h5diff_main.c
   )
   target_include_directories (h5diff-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5diff-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   #target_compile_definitions (h5diff-shared PRIVATE H5_TOOLS_DEBUG)
   TARGET_C_PROPERTIES (h5diff-shared SHARED)
   target_link_libraries (h5diff-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
diff --git a/tools/src/h5dump/CMakeLists.txt b/tools/src/h5dump/CMakeLists.txt
index dbf92cf..0b6c968 100644
--- a/tools/src/h5dump/CMakeLists.txt
+++ b/tools/src/h5dump/CMakeLists.txt
@@ -11,6 +11,7 @@ if (NOT ONLY_SHARED_LIBS)
       ${HDF5_TOOLS_SRC_H5DUMP_SOURCE_DIR}/h5dump_xml.c
   )
   target_include_directories (h5dump PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5dump PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5dump STATIC)
   target_link_libraries (h5dump PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5dump PROPERTIES FOLDER tools)
@@ -26,6 +27,7 @@ if (BUILD_SHARED_LIBS)
       ${HDF5_TOOLS_SRC_H5DUMP_SOURCE_DIR}/h5dump_xml.c
   )
   target_include_directories (h5dump-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5dump-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5dump-shared SHARED)
   target_link_libraries (h5dump-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5dump-shared PROPERTIES FOLDER tools)
diff --git a/tools/src/h5dump/h5dump_ddl.c b/tools/src/h5dump/h5dump_ddl.c
index a410fda..9414f5b 100644
--- a/tools/src/h5dump/h5dump_ddl.c
+++ b/tools/src/h5dump/h5dump_ddl.c
@@ -816,14 +816,14 @@ dump_group(hid_t gid, const char *name)
         /* dump unamed type in root group */
         for(u = 0; u < type_table->nobjs; u++)
             if(!type_table->objs[u].recorded) {
-                char *obj_addr_str = NULL;
+                char *obj_tok_str = NULL;
 
                 dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
                 type = H5Dget_type(dset);
 
-                H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_addr_str);
-                HDsprintf(type_name, "#%s", obj_addr_str);
-                H5free_memory(obj_addr_str);
+                H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_tok_str);
+                HDsprintf(type_name, "#%s", obj_tok_str);
+                H5free_memory(obj_tok_str);
 
                 dump_function_table->dump_named_datatype_function(type, type_name);
                 H5Tclose(type);
@@ -1258,11 +1258,11 @@ dump_fcontents(hid_t fid)
 
         for (u = 0; u < type_table->nobjs; u++) {
             if (!type_table->objs[u].recorded) {
-                char *obj_addr_str = NULL;
+                char *obj_tok_str = NULL;
 
-                H5Otoken_to_str(fid, &type_table->objs[u].obj_token, &obj_addr_str);
-                PRINTSTREAM(rawoutstream, " %-10s /#%s\n", "datatype", obj_addr_str);
-                H5free_memory(obj_addr_str);
+                H5Otoken_to_str(fid, &type_table->objs[u].obj_token, &obj_tok_str);
+                PRINTSTREAM(rawoutstream, " %-10s /#%s\n", "datatype", obj_tok_str);
+                H5free_memory(obj_tok_str);
             }
         }
     }
@@ -1914,12 +1914,12 @@ handle_datatypes(hid_t fid, const char *type, void H5_ATTR_UNUSED * data, int pe
             char name[128];
 
             if(!type_table->objs[idx].recorded) {
-                char *obj_addr_string = NULL;
+                char *obj_tok_str = NULL;
 
                 /* unamed datatype */
-                H5Otoken_to_str(fid, &type_table->objs[idx].obj_token, &obj_addr_string);
-                HDsprintf(name, "/#%s", obj_addr_string);
-                H5free_memory(obj_addr_string);
+                H5Otoken_to_str(fid, &type_table->objs[idx].obj_token, &obj_tok_str);
+                HDsprintf(name, "/#%s", obj_tok_str);
+                H5free_memory(obj_tok_str);
 
                 if(!HDstrcmp(name, real_name))
                     break;
diff --git a/tools/src/h5dump/h5dump_xml.c b/tools/src/h5dump/h5dump_xml.c
index d9f1f67..4f58b73 100644
--- a/tools/src/h5dump/h5dump_xml.c
+++ b/tools/src/h5dump/h5dump_xml.c
@@ -578,7 +578,7 @@ int
 xml_name_to_XID(hid_t loc_id, const char *str, char *outstr, int outlen, int gen)
 {
     H5O_token_t obj_token;
-    char *obj_addr_str = NULL;
+    char *obj_tok_str = NULL;
     int lookup_ret;
 
     if (outlen < 22) return 1;
@@ -591,9 +591,9 @@ xml_name_to_XID(hid_t loc_id, const char *str, char *outstr, int outlen, int gen
                 if (gen) {
                     ref_path_table_gen_fake(str, &obj_token);
 
-                    H5Otoken_to_str(loc_id, &obj_token, &obj_addr_str);
-                    HDsprintf(outstr, "xid_%s", obj_addr_str);
-                    H5free_memory(obj_addr_str);
+                    H5Otoken_to_str(loc_id, &obj_token, &obj_tok_str);
+                    HDsprintf(outstr, "xid_%s", obj_tok_str);
+                    H5free_memory(obj_tok_str);
 
                     return 0;
                 }
@@ -606,9 +606,9 @@ xml_name_to_XID(hid_t loc_id, const char *str, char *outstr, int outlen, int gen
             if (gen) {
                 ref_path_table_gen_fake(str, &obj_token);
 
-                H5Otoken_to_str(loc_id, &obj_token, &obj_addr_str);
-                HDsprintf(outstr, "xid_%s", obj_addr_str);
-                H5free_memory(obj_addr_str);
+                H5Otoken_to_str(loc_id, &obj_token, &obj_tok_str);
+                HDsprintf(outstr, "xid_%s", obj_tok_str);
+                H5free_memory(obj_tok_str);
 
                 return 0;
             }
@@ -618,9 +618,9 @@ xml_name_to_XID(hid_t loc_id, const char *str, char *outstr, int outlen, int gen
         }
     }
 
-    H5Otoken_to_str(loc_id, &obj_token, &obj_addr_str);
-    HDsprintf(outstr, "xid_%s", obj_addr_str);
-    H5free_memory(obj_addr_str);
+    H5Otoken_to_str(loc_id, &obj_token, &obj_tok_str);
+    HDsprintf(outstr, "xid_%s", obj_tok_str);
+    H5free_memory(obj_tok_str);
 
     return 0;
 }
@@ -2659,14 +2659,14 @@ xml_dump_group(hid_t gid, const char *name)
                     /* Very special case: dump unamed type in root group */
                     for(u = 0; u < type_table->nobjs; u++) {
                         if(!type_table->objs[u].recorded) {
-                            char *obj_addr_str = NULL;
+                            char *obj_tok_str = NULL;
 
                             dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
                             type = H5Dget_type(dset);
 
-                            H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_addr_str);
-                            HDsprintf(type_name, "#%s", obj_addr_str);
-                            H5free_memory(obj_addr_str);
+                            H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_tok_str);
+                            HDsprintf(type_name, "#%s", obj_tok_str);
+                            H5free_memory(obj_tok_str);
 
                             dump_function_table->dump_named_datatype_function(type, type_name);
                             H5Tclose(type);
@@ -2747,14 +2747,14 @@ xml_dump_group(hid_t gid, const char *name)
             /* Very special case: dump unamed type in root group */
             for(u = 0; u < type_table->nobjs; u++) {
                 if(!type_table->objs[u].recorded) {
-                    char *obj_addr_str = NULL;
+                    char *obj_tok_str = NULL;
 
                     dset = H5Dopen2(gid, type_table->objs[u].objname, H5P_DEFAULT);
                     type = H5Dget_type(dset);
 
-                    H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_addr_str);
-                    HDsprintf(type_name, "#%s", obj_addr_str);
-                    H5free_memory(obj_addr_str);
+                    H5Otoken_to_str(dset, &type_table->objs[u].obj_token, &obj_tok_str);
+                    HDsprintf(type_name, "#%s", obj_tok_str);
+                    H5free_memory(obj_tok_str);
 
                     dump_function_table->dump_named_datatype_function(type, type_name);
                     H5Tclose(type);
diff --git a/tools/src/h5format_convert/CMakeLists.txt b/tools/src/h5format_convert/CMakeLists.txt
index 70c07ee..863ecbe 100644
--- a/tools/src/h5format_convert/CMakeLists.txt
+++ b/tools/src/h5format_convert/CMakeLists.txt
@@ -7,6 +7,7 @@ project (HDF5_TOOLS_SRC_H5FC C)
 if (NOT ONLY_SHARED_LIBS)
   add_executable (h5format_convert ${HDF5_TOOLS_SRC_H5FC_SOURCE_DIR}/h5format_convert.c)
   target_include_directories (h5format_convert PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5format_convert PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5format_convert STATIC)
   target_link_libraries (h5format_convert PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5format_convert PROPERTIES FOLDER tools)
@@ -17,6 +18,7 @@ endif ()
 if (BUILD_SHARED_LIBS)
   add_executable (h5format_convert-shared ${HDF5_TOOLS_SRC_H5FC_SOURCE_DIR}/h5format_convert.c)
   target_include_directories (h5format_convert-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5format_convert-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5format_convert-shared SHARED)
   target_link_libraries (h5format_convert-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5format_convert-shared PROPERTIES FOLDER tools)
diff --git a/tools/src/h5ls/CMakeLists.txt b/tools/src/h5ls/CMakeLists.txt
index 7be33b5..c1ce006 100644
--- a/tools/src/h5ls/CMakeLists.txt
+++ b/tools/src/h5ls/CMakeLists.txt
@@ -7,6 +7,7 @@ project (HDF5_TOOLS_SRC_H5LS C)
 if (NOT ONLY_SHARED_LIBS)
   add_executable (h5ls ${HDF5_TOOLS_SRC_H5LS_SOURCE_DIR}/h5ls.c)
   target_include_directories (h5ls PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5ls PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   #target_compile_definitions(h5ls PRIVATE H5_TOOLS_DEBUG)
   TARGET_C_PROPERTIES (h5ls STATIC)
   target_link_libraries (h5ls PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
@@ -19,6 +20,7 @@ endif ()
 if (BUILD_SHARED_LIBS)
   add_executable (h5ls-shared ${HDF5_TOOLS_SRC_H5LS_SOURCE_DIR}/h5ls.c)
   target_include_directories (h5ls-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5ls-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   #target_compile_definitions(h5ls-shared PRIVATE H5_TOOLS_DEBUG)
   TARGET_C_PROPERTIES (h5ls-shared SHARED)
   target_link_libraries (h5ls-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
diff --git a/tools/src/h5repack/CMakeLists.txt b/tools/src/h5repack/CMakeLists.txt
index 967e8d7..a4aa1ef 100644
--- a/tools/src/h5repack/CMakeLists.txt
+++ b/tools/src/h5repack/CMakeLists.txt
@@ -17,6 +17,7 @@ set (REPACK_COMMON_SOURCES
 if (NOT ONLY_SHARED_LIBS)
   add_executable (h5repack ${REPACK_COMMON_SOURCES} ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_main.c)
   target_include_directories (h5repack PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5repack PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5repack STATIC)
   target_link_libraries (h5repack PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5repack PROPERTIES FOLDER tools)
@@ -28,6 +29,7 @@ endif ()
 if (BUILD_SHARED_LIBS)
   add_executable (h5repack-shared ${REPACK_COMMON_SOURCES} ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_main.c)
   target_include_directories (h5repack-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5repack-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5repack-shared SHARED)
   target_link_libraries (h5repack-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5repack-shared PROPERTIES FOLDER tools)
diff --git a/tools/src/h5stat/CMakeLists.txt b/tools/src/h5stat/CMakeLists.txt
index f6cc542..f0722fd 100644
--- a/tools/src/h5stat/CMakeLists.txt
+++ b/tools/src/h5stat/CMakeLists.txt
@@ -7,6 +7,7 @@ project (HDF5_TOOLS_SRC_H5STAT C)
 if (NOT ONLY_SHARED_LIBS)
   add_executable (h5stat ${HDF5_TOOLS_SRC_H5STAT_SOURCE_DIR}/h5stat.c)
   target_include_directories (h5stat PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5stat PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5stat STATIC)
   target_link_libraries (h5stat PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5stat PROPERTIES FOLDER tools)
@@ -18,6 +19,7 @@ endif ()
 if (BUILD_SHARED_LIBS)
   add_executable (h5stat-shared ${HDF5_TOOLS_SRC_H5STAT_SOURCE_DIR}/h5stat.c)
   target_include_directories (h5stat-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5stat-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5stat-shared SHARED)
   target_link_libraries (h5stat-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5stat-shared PROPERTIES FOLDER tools)
diff --git a/tools/src/misc/CMakeLists.txt b/tools/src/misc/CMakeLists.txt
index 16e4555..1e9cacc 100644
--- a/tools/src/misc/CMakeLists.txt
+++ b/tools/src/misc/CMakeLists.txt
@@ -8,6 +8,7 @@ project (HDF5_TOOLS_SRC_MISC C)
 if (NOT ONLY_SHARED_LIBS)
   add_executable (h5debug ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5debug.c)
   target_include_directories (h5debug PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5debug PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5debug STATIC)
   target_link_libraries (h5debug PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5debug PROPERTIES FOLDER tools)
@@ -15,6 +16,7 @@ if (NOT ONLY_SHARED_LIBS)
 
   add_executable (h5repart ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5repart.c)
   target_include_directories (h5repart PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5repart PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5repart STATIC)
   target_link_libraries (h5repart PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5repart PROPERTIES FOLDER tools)
@@ -22,6 +24,7 @@ if (NOT ONLY_SHARED_LIBS)
 
   add_executable (h5mkgrp ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5mkgrp.c)
   target_include_directories (h5mkgrp PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5mkgrp PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5mkgrp STATIC)
   target_link_libraries (h5mkgrp PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5mkgrp PROPERTIES FOLDER tools)
@@ -29,6 +32,7 @@ if (NOT ONLY_SHARED_LIBS)
 
   add_executable (h5clear ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5clear.c)
   target_include_directories (h5clear PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5clear PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5clear STATIC)
   target_link_libraries (h5clear PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
   set_target_properties (h5clear PROPERTIES FOLDER tools)
@@ -45,12 +49,14 @@ if (BUILD_SHARED_LIBS)
   add_executable (h5debug-shared ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5debug.c)
   target_include_directories (h5debug-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
   TARGET_C_PROPERTIES (h5debug-shared SHARED)
+  target_compile_options(h5debug-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   target_link_libraries (h5debug-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5debug-shared PROPERTIES FOLDER tools)
   set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5debug-shared")
 
   add_executable (h5repart-shared ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5repart.c)
   target_include_directories (h5repart-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5repart-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5repart-shared SHARED)
   target_link_libraries (h5repart-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5repart-shared PROPERTIES FOLDER tools)
@@ -58,6 +64,7 @@ if (BUILD_SHARED_LIBS)
 
   add_executable (h5mkgrp-shared ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5mkgrp.c)
   target_include_directories (h5mkgrp-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5mkgrp-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5mkgrp-shared SHARED)
   target_link_libraries (h5mkgrp-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5mkgrp-shared PROPERTIES FOLDER tools)
@@ -65,6 +72,7 @@ if (BUILD_SHARED_LIBS)
 
   add_executable (h5clear-shared ${HDF5_TOOLS_SRC_MISC_SOURCE_DIR}/h5clear.c)
   target_include_directories (h5clear-shared PRIVATE "${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_compile_options(h5clear-shared PRIVATE "${HDF5_CMAKE_C_FLAGS}")
   TARGET_C_PROPERTIES (h5clear-shared SHARED)
   target_link_libraries (h5clear-shared PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
   set_target_properties (h5clear-shared PROPERTIES FOLDER tools)