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authorDana Robinson <43805+derobins@users.noreply.github.com>2022-08-02 19:54:40 (GMT)
committerGitHub <noreply@github.com>2022-08-02 19:54:40 (GMT)
commitfcf41b3cd60df51af9be529e379a9dd6c488d088 (patch)
treee486d5f8254a33b978c34069b9810ce171ba7c2c /tools/test/h5dump
parentea13de1bb0aba8a97c75f10343dc4c792193b215 (diff)
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Onion VFD (#1953)
* Onion VFD feature * Fixes onion VFD errors with non-sec2 backing store VFDs * Disables the onion VFD tests w/ ph5diff * Disables non-sec2 VFDs as onion VFD backing stores * Committing clang-format changes * Formatted source * Typo * Adds onion VFD tools tests to CMake * Fixes for v16 API compatibility * Memset structs to avoid bad frees on errors * H5Dwrite() calls now use H5T_NATIVE_INT as the memory type vs LE * Properly decodes checksums on BE machines * Be more careful about uint64_t to haddr_t/hsize_t conversions * Another fix for BE data comparison * Removed double underscores from onion constants * Replace hard-coded onion header string w/ constant * Fixes cleanup paths in H5FD__onion_ingest_history() * Fixed use of size_t revision numbers * Fix h5dump revision count format string Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Diffstat (limited to 'tools/test/h5dump')
-rw-r--r--tools/test/h5dump/CMakeTests.cmake20
-rw-r--r--tools/test/h5dump/h5dumpgentest.c677
-rw-r--r--tools/test/h5dump/testh5dump.sh.in16
3 files changed, 712 insertions, 1 deletions
diff --git a/tools/test/h5dump/CMakeTests.cmake b/tools/test/h5dump/CMakeTests.cmake
index 933aba9..4fa9a8f 100644
--- a/tools/test/h5dump/CMakeTests.cmake
+++ b/tools/test/h5dump/CMakeTests.cmake
@@ -211,6 +211,11 @@
${HDF5_TOOLS_DIR}/testfiles/trefer_paramR.ddl
${HDF5_TOOLS_DIR}/testfiles/trefer_reg_1dR.ddl
${HDF5_TOOLS_DIR}/testfiles/trefer_regR.ddl
+ # Onion VFD files
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_objs.ddl
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_dset_ext.ddl
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_dset_1d.ddl
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_revision_count.ddl
)
set (HDF5_N_REFERENCE_FILES
tall-3
@@ -350,7 +355,13 @@
${HDF5_TOOLS_DIR}/testfiles/trefer_param.h5
${HDF5_TOOLS_DIR}/testfiles/trefer_reg_1d.h5
${HDF5_TOOLS_DIR}/testfiles/trefer_reg.h5
-
+ # Onion VFD files
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_objs.h5
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_objs.h5.onion
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_dset_ext.h5
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_dset_ext.h5.onion
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_dset_1d.h5
+ ${HDF5_TOOLS_DIR}/testfiles/tst_onion_dset_1d.h5.onion
)
set (HDF5_ERROR_REFERENCE_TEST_FILES
${PROJECT_SOURCE_DIR}/errfiles/filter_fail.err
@@ -1187,6 +1198,13 @@
ADD_H5_TEST (tCVE_2018_11206_fill_old 1 tCVE_2018_11206_fill_old.h5)
ADD_H5_TEST (tCVE_2018_11206_fill_new 1 tCVE_2018_11206_fill_new.h5)
+ # onion VFD tests
+ ADD_H5_TEST (tst_onion_objs 0 --enable-error-stack --vfd-name onion --vfd-info 3 tst_onion_objs.h5)
+ ADD_H5_TEST (tst_onion_dset_ext 0 --enable-error-stack --vfd-name onion --vfd-info 1 tst_onion_dset_ext.h5)
+ ADD_H5_TEST (tst_onion_dset_1d 0 --enable-error-stack --vfd-name onion --vfd-info 1 tst_onion_dset_1d.h5)
+ ADD_H5_TEST (tst_onion_revision_count 0 --enable-error-stack --vfd-name onion --vfd-info revision_count tst_onion_objs.h5)
+
+
##############################################################################
### P L U G I N T E S T S
##############################################################################
diff --git a/tools/test/h5dump/h5dumpgentest.c b/tools/test/h5dump/h5dumpgentest.c
index 30e0c46..08f241c 100644
--- a/tools/test/h5dump/h5dumpgentest.c
+++ b/tools/test/h5dump/h5dumpgentest.c
@@ -117,6 +117,13 @@
#define FILE87 "tintsnodata.h5"
#define FILE88 "tldouble_scalar.h5"
#define FILE89 "tfloatsattrs.h5"
+#define FILE90 "tst_onion_dset_1d.h5"
+#define FILE91 "tst_onion_objs.h5"
+#define FILE92 "tst_onion_dset_ext.h5"
+
+#define ONION_TEST_FIXNAME_SIZE 1024
+#define ONION_TEST_PAGE_SIZE (uint32_t)32
+#define ONE_DIM_SIZE 16
/*-------------------------------------------------------------------------
* prototypes
@@ -11350,6 +11357,671 @@ error:
H5E_END_TRY;
} /* gen_err_attr_dspace() */
+/* Structure to collect the onion filepaths in one place. */
+struct onion_filepaths {
+ char *canon;
+ char *onion;
+ char *recovery;
+};
+
+/* Allocate and populate filepaths with h5_fixname'd strings as appropriate.
+ * Should be released with onion_filepaths_destroy() when done.
+ */
+static struct onion_filepaths *
+onion_filepaths_init(const char *basename)
+{
+ struct onion_filepaths *paths = NULL;
+
+ if (NULL == (paths = HDcalloc(1, sizeof(struct onion_filepaths))))
+ goto error;
+
+ if (NULL == (paths->canon = HDstrdup(basename)))
+ goto error;
+
+ if (NULL == (paths->onion = HDmalloc(sizeof(char) * ONION_TEST_FIXNAME_SIZE)))
+ goto error;
+ HDsnprintf(paths->onion, ONION_TEST_FIXNAME_SIZE, "%s.onion", paths->canon);
+
+ if (NULL == (paths->recovery = HDmalloc(sizeof(char) * ONION_TEST_FIXNAME_SIZE)))
+ goto error;
+ HDsnprintf(paths->recovery, ONION_TEST_FIXNAME_SIZE, "%s.onion.recovery", paths->canon);
+
+ return paths;
+
+error:
+ if (paths != NULL) {
+ HDfree(paths->canon);
+ HDfree(paths->onion);
+ HDfree(paths->recovery);
+ HDfree(paths);
+ }
+ return NULL;
+}
+
+static void
+onion_filepaths_destroy(struct onion_filepaths *s)
+{
+ if (s) {
+ HDfree(s->canon);
+ HDfree(s->onion);
+ HDfree(s->recovery);
+ HDfree(s);
+ }
+}
+
+static int
+gent_onion_1d_dset(void)
+{
+ hid_t file_id = H5I_INVALID_HID;
+ hid_t file = H5I_INVALID_HID;
+ hid_t space = H5I_INVALID_HID;
+ hid_t dset = H5I_INVALID_HID;
+ hid_t dcpl = H5I_INVALID_HID;
+ hid_t fapl_id = H5I_INVALID_HID;
+ struct onion_filepaths *paths = NULL;
+ H5FD_onion_fapl_info_t onion_info = {
+ H5FD_ONION_FAPL_INFO_VERSION_CURR,
+ H5I_INVALID_HID, /* backing_fapl_id */
+ ONION_TEST_PAGE_SIZE, /* page_size */
+ H5FD_ONION_STORE_TARGET_ONION, /* store_target */
+ H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
+ 0, /* force_write_open */
+ 0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
+ "initial commit" /* comment */
+ };
+ hsize_t dims[2] = {1, ONE_DIM_SIZE};
+ hsize_t maxdims[2] = {1, ONE_DIM_SIZE};
+ int wdata[1][ONE_DIM_SIZE];
+ int fillval;
+
+ /* Setup */
+ onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS);
+
+ if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ goto error;
+ if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
+ goto error;
+
+ if ((paths = onion_filepaths_init(FILE90)) == NULL)
+ goto error;
+
+ /*----------------------------------------------------------------------
+ * Create the skeleton file (create the file without Onion VFD)
+ *----------------------------------------------------------------------
+ */
+ /* Initialize data */
+ for (int i = 0; i < ONE_DIM_SIZE; i++)
+ wdata[0][i] = i;
+
+ /* Create a new file using the default properties */
+ if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Create dataspace with unlimited dimensions */
+ if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
+ goto error;
+
+ /* Create the dataset creation property list */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+
+ /* Set the fill value for the dataset */
+ fillval = 99;
+ if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
+ goto error;
+
+ /* Set the allocation time to "early". This way we can be sure
+ * that reading from the dataset immediately after creation will
+ * return the fill value.
+ */
+ if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
+ goto error;
+
+ /* Create the dataset using the dataset creation property list */
+ if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Write the data to the dataset */
+ if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata[0]) < 0)
+ goto error;
+
+ /* Close and release resources */
+ if (H5Pclose(dcpl) < 0)
+ goto error;
+ if (H5Dclose(dset) < 0)
+ goto error;
+ if (H5Sclose(space) < 0)
+ goto error;
+ if (H5Fclose(file) < 0)
+ goto error;
+
+ /*----------------------------------------------------------------------
+ * First revision: open the file with Onion VFD and change the data
+ *----------------------------------------------------------------------
+ */
+ if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
+ goto error;
+
+ int dset_data[1][ONE_DIM_SIZE];
+ for (int i = 0; i < ONE_DIM_SIZE; i++)
+ dset_data[0][i] = i + ONE_DIM_SIZE;
+
+ if (H5Dwrite(dset, H5T_STD_I32LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
+ goto error;
+
+ if (H5Dclose(dset) < 0)
+ goto error;
+ if (H5Fclose(file_id) < 0)
+ goto error;
+
+ /*----------------------------------------------------------------------
+ * Second revision: open the file with Onion VFD and change the data
+ *----------------------------------------------------------------------
+ */
+ if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
+ goto error;
+
+ for (int i = 0; i < ONE_DIM_SIZE; i++)
+ dset_data[0][i] = i + 2048;
+
+ if (H5Dwrite(dset, H5T_STD_I32LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
+ goto error;
+
+ /* CLEANUP */
+ if (H5Dclose(dset) < 0)
+ goto error;
+ dset = H5I_INVALID_HID;
+ if (H5Fclose(file_id) < 0)
+ goto error;
+ file_id = H5I_INVALID_HID;
+
+ /*----------------------------------------------------------------------
+ * Third revision: open the file with Onion VFD and change the data
+ *----------------------------------------------------------------------
+ */
+ if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
+ goto error;
+
+ for (int i = 0; i < ONE_DIM_SIZE; i += 20)
+ dset_data[0][i] = i + 3072;
+
+ if (H5Dwrite(dset, H5T_STD_I32LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
+ goto error;
+
+ /* CLEANUP */
+ if (H5Dclose(dset) < 0)
+ goto error;
+ if (H5Fclose(file_id) < 0)
+ goto error;
+ if (H5Pclose(fapl_id) < 0)
+ goto error;
+ if (H5Pclose(onion_info.backing_fapl_id) < 0)
+ goto error;
+
+ onion_filepaths_destroy(paths);
+
+ return 0;
+
+error:
+ H5E_BEGIN_TRY
+ {
+ H5Pclose(onion_info.backing_fapl_id);
+ H5Pclose(fapl_id);
+ H5Dclose(dset);
+ H5Sclose(space);
+ H5Fclose(file_id);
+ }
+ H5E_END_TRY;
+
+ return -1;
+} /* gent_onion_1d_dset */
+
+static int
+gent_onion_create_delete_objects(void)
+{
+ struct onion_filepaths *paths = NULL;
+
+ H5FD_onion_fapl_info_t onion_info = {
+ H5FD_ONION_FAPL_INFO_VERSION_CURR,
+ H5I_INVALID_HID, /* backing_fapl_id */
+ ONION_TEST_PAGE_SIZE, /* page_size */
+ H5FD_ONION_STORE_TARGET_ONION, /* store_target */
+ H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
+ 0, /* force_write_open */
+ 0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
+ "initial commit" /* comment */
+ };
+
+ hid_t fapl_id = H5I_INVALID_HID;
+ hid_t group_id = H5I_INVALID_HID;
+ hid_t attr_space_id = H5I_INVALID_HID;
+ hid_t attr_id = H5I_INVALID_HID;
+ hid_t file = H5I_INVALID_HID;
+ hid_t space = H5I_INVALID_HID;
+ hid_t dset = H5I_INVALID_HID;
+ hid_t dcpl = H5I_INVALID_HID;
+
+ hsize_t attr_dim[1] = {4};
+ hsize_t dims[2] = {4, 4};
+ hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+ hsize_t chunk[2] = {4, 4};
+ int wdata[4][4];
+
+ int fillval;
+
+ /* Set up */
+ if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ goto error;
+ if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ goto error;
+ if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
+ goto error;
+
+ if ((paths = onion_filepaths_init(FILE91)) == NULL)
+ goto error;
+
+ /*----------------------------------------------------------------------
+ * Create the skeleton file (create the file without Onion VFD)
+ *----------------------------------------------------------------------
+ */
+
+ /*
+ * Initialize data.
+ */
+ for (int i = 0; i < 4; i++)
+ for (int j = 0; j < 4; j++)
+ wdata[i][j] = i + j;
+
+ /*
+ * Create a new file using the default properties.
+ */
+ if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /*
+ * Create dataspace with unlimited dimensions.
+ */
+ if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
+ goto error;
+
+ /*
+ * Create the dataset creation property list, and set the chunk
+ * size.
+ */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+ if (H5Pset_chunk(dcpl, 2, chunk) < 0)
+ goto error;
+
+ /*
+ * Set the fill value for the dataset.
+ */
+ fillval = 99;
+ if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
+ goto error;
+
+ /*
+ * Set the allocation time to "early". This way we can be sure
+ * that reading from the dataset immediately after creation will
+ * return the fill value.
+ */
+ if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
+ goto error;
+
+ /*
+ * Create the dataset using the dataset creation property list.
+ */
+ if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /*
+ * Write the data to the dataset.
+ */
+ if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
+ goto error;
+
+ if (H5Dclose(dset) < 0)
+ goto error;
+ if (H5Fclose(file) < 0)
+ goto error;
+
+ /*----------------------------------------------------------------------
+ * First revision: open the file with Onion VFD and add a dataset (DS2) to the file
+ *----------------------------------------------------------------------
+ */
+ if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ /*
+ * Create the dataset using the dataset creation property list.
+ */
+ if ((dset = H5Dcreate2(file, "DS2", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /*
+ * Write the data to the dataset.
+ */
+ if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
+ goto error;
+
+ if (H5Dclose(dset) < 0)
+ goto error;
+ dset = H5I_INVALID_HID;
+ if (H5Fclose(file) < 0)
+ goto error;
+ file = H5I_INVALID_HID;
+
+ /*----------------------------------------------------------------------
+ * Second revision: open the file with Onion VFD and remove the dataset (DS2),
+ * which was added during the first revision.
+ *----------------------------------------------------------------------
+ */
+ if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ if (H5Ldelete(file, "DS2", H5P_DEFAULT) < 0)
+ goto error;
+
+ if (H5Fclose(file) < 0)
+ goto error;
+ file = H5I_INVALID_HID;
+
+ /*----------------------------------------------------------------------
+ * Third revision: open the file with Onion VFD and add an attribute to the file
+ *----------------------------------------------------------------------
+ */
+ if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ /* Create dataspace for attribute */
+ attr_space_id = H5Screate_simple(1, attr_dim, NULL);
+
+ if ((attr_id =
+ H5Acreate2(file, "file_attribute", H5T_STD_I32LE, attr_space_id, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ if (H5Sclose(attr_space_id) < 0)
+ goto error;
+ if (H5Aclose(attr_id) < 0)
+ goto error;
+ if (H5Fclose(file) < 0)
+ goto error;
+ file = H5I_INVALID_HID;
+
+ /*----------------------------------------------------------------------
+ * Fourth revision: open the file with Onion VFD and delete the attribute
+ *----------------------------------------------------------------------
+ */
+ if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ if (H5Adelete(file, "file_attribute") < 0)
+ goto error;
+
+ if (H5Fclose(file) < 0)
+ goto error;
+ file = H5I_INVALID_HID;
+
+ /*----------------------------------------------------------------------
+ * Fifth revision: open the file with Onion VFD and add a group to the file
+ *----------------------------------------------------------------------
+ */
+ if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ if ((group_id = H5Gcreate2(file, "new_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ if (H5Gclose(group_id) < 0)
+ goto error;
+ if (H5Fclose(file) < 0)
+ goto error;
+ file = H5I_INVALID_HID;
+
+ /*----------------------------------------------------------------------
+ * Sixth revision: open the file with Onion VFD and delete the newly added group
+ *----------------------------------------------------------------------
+ */
+ if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ if (H5Ldelete(file, "new_group", H5P_DEFAULT) < 0)
+ goto error;
+
+ if (H5Fclose(file) < 0)
+ goto error;
+ file = H5I_INVALID_HID;
+
+ /*
+ * Close and release resources.
+ */
+ if (H5Pclose(onion_info.backing_fapl_id) < 0)
+ goto error;
+ if (H5Pclose(fapl_id) < 0)
+ goto error;
+ if (H5Pclose(dcpl) < 0)
+ goto error;
+ if (H5Sclose(space) < 0)
+ goto error;
+
+ onion_filepaths_destroy(paths);
+
+ return 0;
+error:
+
+ if (paths != NULL) {
+ HDremove(paths->canon);
+ HDremove(paths->onion);
+ HDremove(paths->recovery);
+ onion_filepaths_destroy(paths);
+ }
+
+ if (dset != H5I_INVALID_HID)
+ (void)H5Dclose(dset);
+ if (file != H5I_INVALID_HID)
+ (void)H5Fclose(file);
+ if (fapl_id != H5I_INVALID_HID)
+ (void)H5Pclose(fapl_id);
+ if (onion_info.backing_fapl_id != H5I_INVALID_HID)
+ H5Pclose(onion_info.backing_fapl_id);
+
+ return -1;
+} /* gent_onion_create_delete_objects */
+
+static int
+gent_onion_dset_extension(void)
+{
+ hid_t fapl_id = H5I_INVALID_HID;
+ hid_t file = H5I_INVALID_HID;
+ hid_t space = H5I_INVALID_HID;
+ hid_t dset_space = H5I_INVALID_HID;
+ hid_t dset = H5I_INVALID_HID;
+ hid_t dcpl = H5I_INVALID_HID;
+ struct onion_filepaths *paths = NULL;
+ H5FD_onion_fapl_info_t onion_info = {
+ H5FD_ONION_FAPL_INFO_VERSION_CURR,
+ H5I_INVALID_HID, /* backing_fapl_id */
+ ONION_TEST_PAGE_SIZE, /* page_size */
+ H5FD_ONION_STORE_TARGET_ONION, /* store_target */
+ H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
+ 0, /* force_write_open */
+ 0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
+ "initial commit" /* comment */
+ };
+ hsize_t dims[2] = {4, 4};
+ hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+ hsize_t chunk[2] = {4, 4};
+ hsize_t size[2];
+ hsize_t offset[2];
+ int wdata[4][4]; /* Write buffer */
+ int fillval;
+
+ /* Setup */
+ if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ goto error;
+ if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ goto error;
+
+ if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
+ goto error;
+
+ if ((paths = onion_filepaths_init(FILE92)) == NULL)
+ goto error;
+
+ /*----------------------------------------------------------------------
+ * Create the skeleton file (create the file without Onion VFD)
+ *----------------------------------------------------------------------
+ */
+ /* Initialize data */
+ for (int i = 0; i < 4; i++)
+ for (int j = 0; j < 4; j++)
+ wdata[i][j] = i + j;
+
+ /* Create a new file using the default properties */
+ if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Create dataspace with unlimited dimensions */
+ if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
+ goto error;
+
+ /* Create the dataset creation property list, and set the chunk
+ * size.
+ */
+ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
+ goto error;
+ if (H5Pset_chunk(dcpl, 2, chunk) < 0)
+ goto error;
+
+ /* Set the fill value for the dataset */
+ fillval = 99;
+ if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
+ goto error;
+
+ /* Set the allocation time to "early". This way we can be sure
+ * that reading from the dataset immediately after creation will
+ * return the fill value.
+ */
+ if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
+ goto error;
+
+ /* Create the dataset using the dataset creation property list */
+ if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Write the data to the dataset */
+ if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
+ goto error;
+
+ if (H5Dclose(dset) < 0)
+ goto error;
+ if (H5Fclose(file) < 0)
+ goto error;
+
+ /*----------------------------------------------------------------------
+ * First revision: open the file with Onion VFD and extend the dataset
+ *----------------------------------------------------------------------
+ */
+ if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ /* Open the dataset */
+ if ((dset = H5Dopen2(file, "DS1", H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Extend the dataset and double the rows */
+ size[0] = 2 * dims[0];
+ size[1] = dims[1];
+ if (H5Dset_extent(dset, size) < 0)
+ goto error;
+
+ if ((dset_space = H5Dget_space(dset)) < 0)
+ goto error;
+
+ offset[0] = dims[0];
+ offset[1] = 0;
+ if (H5Sselect_hyperslab(dset_space, H5S_SELECT_SET, offset, NULL, dims, NULL) < 0)
+ goto error;
+
+ /* Write the data to the dataset. */
+ if (H5Dwrite(dset, H5T_NATIVE_INT, space, dset_space, H5P_DEFAULT, wdata) < 0)
+ goto error;
+
+ if (H5Sclose(dset_space) < 0)
+ goto error;
+
+ if (H5Dclose(dset) < 0)
+ goto error;
+ dset = H5I_INVALID_HID;
+ if (H5Fclose(file) < 0)
+ goto error;
+ file = H5I_INVALID_HID;
+
+ /*----------------------------------------------------------------------
+ * Second revision: open the file with Onion VFD and shrink the dataset
+ *----------------------------------------------------------------------
+ */
+ if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
+ goto error;
+
+ /* Open the dataset */
+ if ((dset = H5Dopen2(file, "DS1", H5P_DEFAULT)) < 0)
+ goto error;
+
+ /* Extend the dataset and shrink back the size */
+ if (H5Dset_extent(dset, dims) < 0)
+ goto error;
+
+ if (H5Dclose(dset) < 0)
+ goto error;
+ dset = H5I_INVALID_HID;
+ if (H5Fclose(file) < 0)
+ goto error;
+ file = H5I_INVALID_HID;
+
+ /* Close and release resources. */
+ if (H5Pclose(onion_info.backing_fapl_id) < 0)
+ goto error;
+ if (H5Pclose(fapl_id) < 0)
+ goto error;
+ if (H5Pclose(dcpl) < 0)
+ goto error;
+ if (H5Sclose(space) < 0)
+ goto error;
+
+ onion_filepaths_destroy(paths);
+
+ return 0;
+error:
+
+ if (paths != NULL) {
+ HDremove(paths->canon);
+ HDremove(paths->onion);
+ HDremove(paths->recovery);
+ onion_filepaths_destroy(paths);
+ }
+
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(dset);
+ H5Fclose(file);
+ H5Pclose(fapl_id);
+ H5Pclose(onion_info.backing_fapl_id);
+ }
+ H5E_END_TRY;
+
+ return -1;
+} /* gent_onion_dset_extension */
+
int
main(void)
{
@@ -11449,5 +12121,10 @@ main(void)
gent_err_attr_dspace();
+ /* Generate the files for testing Onion VFD */
+ gent_onion_1d_dset();
+ gent_onion_create_delete_objects();
+ gent_onion_dset_extension();
+
return 0;
}
diff --git a/tools/test/h5dump/testh5dump.sh.in b/tools/test/h5dump/testh5dump.sh.in
index f9f3734..ce7f643 100644
--- a/tools/test/h5dump/testh5dump.sh.in
+++ b/tools/test/h5dump/testh5dump.sh.in
@@ -184,6 +184,12 @@ $SRC_H5DUMP_TESTFILES/tvms.h5
$SRC_H5DUMP_TESTFILES/err_attr_dspace.h5
$SRC_H5DUMP_TESTFILES/tCVE_2018_11206_fill_old.h5
$SRC_H5DUMP_TESTFILES/tCVE_2018_11206_fill_new.h5
+$SRC_H5DUMP_TESTFILES/tst_onion_objs.h5
+$SRC_H5DUMP_TESTFILES/tst_onion_objs.h5.onion
+$SRC_H5DUMP_TESTFILES/tst_onion_dset_ext.h5
+$SRC_H5DUMP_TESTFILES/tst_onion_dset_ext.h5.onion
+$SRC_H5DUMP_TESTFILES/tst_onion_dset_1d.h5
+$SRC_H5DUMP_TESTFILES/tst_onion_dset_1d.h5.onion
"
LIST_OTHER_TEST_FILES="
@@ -372,6 +378,10 @@ $SRC_H5DUMP_TESTFILES/h5dump-help.txt
$SRC_H5DUMP_TESTFILES/out3.h5import
$SRC_H5DUMP_TESTFILES/tbinregR.exp
$SRC_H5DUMP_TESTFILES/err_attr_dspace.ddl
+$SRC_H5DUMP_TESTFILES/tst_onion_objs.ddl
+$SRC_H5DUMP_TESTFILES/tst_onion_dset_ext.ddl
+$SRC_H5DUMP_TESTFILES/tst_onion_dset_1d.ddl
+$SRC_H5DUMP_TESTFILES/tst_onion_revision_count.ddl
"
LIST_ERROR_TEST_FILES="
@@ -1486,6 +1496,12 @@ TOOLTEST err_attr_dspace.ddl err_attr_dspace.h5
TOOLTEST_FAIL tCVE_2018_11206_fill_old.h5
TOOLTEST_FAIL tCVE_2018_11206_fill_new.h5
+# test Onion VFD
+TOOLTEST tst_onion_objs.ddl --enable-error-stack --vfd-name onion --vfd-info 3 tst_onion_objs.h5
+TOOLTEST tst_onion_dset_ext.ddl --enable-error-stack --vfd-name onion --vfd-info 1 tst_onion_dset_ext.h5
+TOOLTEST tst_onion_dset_1d.ddl --enable-error-stack --vfd-name onion --vfd-info 1 tst_onion_dset_1d.h5
+TOOLTEST tst_onion_revision_count.ddl --enable-error-stack --vfd-name onion --vfd-info revision_count tst_onion_objs.h5
+
# Clean up temporary files/directories
CLEAN_TESTFILES_AND_TESTDIR