Sync develop branch changes since 2/16 to hdf5_1_14 branch (#4058)

* Remove oneapi return value warning. (#4028)

* Replaced last sprintf with snprintf (#4007)

* Replaced last sprintf with snprintf

To have the size of the buffer, it was required to change a function signature, and change all users of it.

In most cases, determining the buffer size wasn't  trivial and so SIZE_MAX is passed. But at least this improves the infrastructure. Someone can later figure out the correct sizes.

* Test vlen sequence IO in API tests (#4027)

* Check argument for CMake REGEX FCMangle.h. (#4029)

* Replace deprecated Fortran 'include mpif.h' with 'USE mpi' (#4031)

With MPI 4.1 the use of the mpif.h include file has been deprecated. Codes
should transition to USE mpi or USE mpi_f08.

Signed-off-by: Christoph Niethammer <niethammer@hlrs.de>

* Fix H5F_get_access_plist to copy file locking settings (#4030)

H5F_get_access_plist previously did not copy over the file locking settings
from a file into the new File Access Property List that it creates. This would
make it difficult to match the file locking settings between an external file
and its parent file.

* Fix missing NOT from if check in HL folder (#4036)

* Fix the datatype passed to H5*exists_async APIs in tests. (#4033)

Add a new testing function to verify C_BOOL values.

* Add deb and rpm binaries to snapshots (#4035)

* Update and Add general INSTALL (#4016)

* Improve performance of flushing single objects (#4017)

Improve performance of flushing a single object, and remove metadata
cache flush markers

* Fix memory leak in H5LTopen_file_image when H5LT_FILE_IMAGE_DONT_COPY flag is used (#4021)

When the H5LT_FILE_IMAGE_DONT_COPY flag is passed to H5LTopen_file_image, the internally-allocated
udata structure gets leaked as the core file driver doesn't have a way to determine when or if it
needs to call the 'udata_free' callback. This has been fixed by freeing the udata structure when
the 'image_free' callback gets made during file close, where the file is holding the last reference
to the udata structure.

* Fix allocating too much memory in dset API test (#4041)

* Don't try to load general-19 warnings file for icc (#4042)

The Autools Classic Intel compiler configuration attempts to load a file
named `general-19` from the intel-warnings/classic directory, which does
not exist.

This removes the attempted load of the file.

* Remove unused AIX cross-compile cache overrides (#4043)

The ibm-aix Autotools config file had some unmaintained and unnecessary
Autoconf cache overrides. These have been removed.

* Consolidate Autotools linux files (#4044)

There are many architecture-specific linux files in the config
directory, all of which simply redirect to linux-gnulibc1.

This change renames linux-gnulibc1 to linux-gnu and deletes the more
specific files.

* Remove check for gettimeofday + tz in CMake (#4045)

This is not used in the library

* Remove limitations on preset generators (#4051)

* Fix issue with FAPL file locking setting inheriting test (#4053)

Fixes an issue where the HDF5_USE_FILE_LOCKING environment variable being
set can interfere with the file locking setting that the test expects to
be returned.

* Bump the github-actions group with 2 updates (#4054)

Bumps the github-actions group with 2 updates: [actions/download-artifact](https://github.com/actions/download-artifact) and [github/codeql-action](https://github.com/github/codeql-action).

* Fix VOL-compatibility issues in External Link API test  (#4039)

Fix link API tests with incorrect filename

* Add upddated cmake tools from source location (#4040)

* Add options to allow tools type selection and naming (#4046)

* Improve error messages when tools attempt to use non-enabled S3 and HDFS VFDs. (#4047)

* Correct several 1.15/1.15.0 references to 1.14/1.14.4.

* Ignore HDF5Examples/CMakeUserPresets.json

1 files changed, 11 insertions, 11 deletions

diff --git a/tools/test/h5jam/CMakeTests.cmake b/tools/test/h5jam/CMakeTests.cmake
index d87899a..2067e79 100644
--- a/tools/test/h5jam/CMakeTests.cmake
+++ b/tools/test/h5jam/CMakeTests.cmake
@@ -54,7 +54,7 @@
   macro (TEST_H5JAM_OUTPUT expectfile resultcode)
     # If using memchecker add tests without using scripts
     if (HDF5_ENABLE_USING_MEMCHECKER)
-      add_test (NAME H5JAM-${expectfile} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5jam${tgt_file_ext}> ${ARGN})
+      add_test (NAME H5JAM-${expectfile} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5jam> ${ARGN})
       if (${resultcode})
         set_tests_properties (H5JAM-${expectfile} PROPERTIES WILL_FAIL "true")
       endif ()
@@ -63,7 +63,7 @@
           NAME H5JAM-${expectfile}
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
-              -D "TEST_PROGRAM=$<TARGET_FILE:h5jam${tgt_file_ext}>"
+              -D "TEST_PROGRAM=$<TARGET_FILE:h5jam>"
               -D "TEST_ARGS:STRING=${ARGN}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
               -D "TEST_OUTPUT=${expectfile}.out"
@@ -86,7 +86,7 @@
   macro (TEST_H5UNJAM_OUTPUT expectfile resultcode)
     # If using memchecker add tests without using scripts
     if (HDF5_ENABLE_USING_MEMCHECKER)
-      add_test (NAME H5JAM-UNJAM-${expectfile} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5unjam${tgt_file_ext}> ${ARGN})
+      add_test (NAME H5JAM-UNJAM-${expectfile} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5unjam> ${ARGN})
       if (${resultcode})
         set_tests_properties (H5JAM-UNJAM-${expectfile} PROPERTIES WILL_FAIL "true")
       endif ()
@@ -95,7 +95,7 @@
           NAME H5JAM-UNJAM-${expectfile}
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
-              -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam${tgt_file_ext}>"
+              -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>"
               -D "TEST_ARGS=${ARGN}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
               -D "TEST_OUTPUT=${expectfile}.out"
@@ -116,7 +116,7 @@
           NAME H5JAM-${testname}-CHECKFILE-H5DMP
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
-              -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_file_ext}>"
+              -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
               -D "TEST_ARGS:STRING=testfiles/${expected}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
               -D "TEST_OUTPUT=${actual}.new"
@@ -133,7 +133,7 @@
           NAME H5JAM-${testname}-CHECKFILE-H5DMP_CMP
           COMMAND "${CMAKE_COMMAND}"
               -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
-              -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_file_ext}>"
+              -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
               -D "TEST_ARGS:STRING=${actual}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
               -D "TEST_OUTPUT=${actual}.out"
@@ -171,7 +171,7 @@
             COMMAND ${CMAKE_COMMAND} -E remove ${ufile}
         )
         set_tests_properties (H5JAM-${testname}-UNJAM_D-clear-objects PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
-        add_test (NAME H5JAM-${testname}-UNJAM COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5unjam${tgt_file_ext}> -i ${infile} -u ${ufile} -o ${outfile})
+        add_test (NAME H5JAM-${testname}-UNJAM COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5unjam> -i ${infile} -u ${ufile} -o ${outfile})
         set_tests_properties (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM_D-clear-objects)
         set (compare_test ${ufile})
       else ()
@@ -180,7 +180,7 @@
               NAME H5JAM-${testname}-UNJAM
               COMMAND "${CMAKE_COMMAND}"
                   -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
-                  -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam${tgt_file_ext}>"
+                  -D "TEST_PROGRAM=$<TARGET_FILE:h5unjam>"
                   -D "TEST_ARGS:STRING=-i;${infile};-o;${outfile}"
                   -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
                   -D "TEST_OUTPUT=${outfile}.ufile.txt"
@@ -191,7 +191,7 @@
           set_tests_properties (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
           set (compare_test "${outfile}.ufile.txt")
         else ()
-          add_test (NAME H5JAM-${testname}-UNJAM COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5unjam${tgt_file_ext}> -i ${infile} -o ${outfile})
+          add_test (NAME H5JAM-${testname}-UNJAM COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5unjam> -i ${infile} -o ${outfile})
           set_tests_properties (H5JAM-${testname}-UNJAM PROPERTIES DEPENDS H5JAM-${testname}-UNJAM-clear-objects)
           set (compare_test "")
         endif ()
@@ -262,7 +262,7 @@
           COMMAND ${CMAKE_COMMAND} -E remove ${outfile} ${infile}.cpy.h5
       )
     endif ()
-    add_test (NAME H5JAM-${testname} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5jam${tgt_file_ext}> -u testfiles/${jamfile} -i testfiles/${infile} -o ${outfile} ${ARGN})
+    add_test (NAME H5JAM-${testname} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i testfiles/${infile} -o ${outfile} ${ARGN})
     if ("H5JAM-${testname}" MATCHES "${HDF5_DISABLE_TESTS_REGEX}")
       set_tests_properties (H5JAM-${testname} PROPERTIES DISABLED true)
     endif ()
@@ -326,7 +326,7 @@
         set_tests_properties (H5JAM-${testname}_NONE_COPY PROPERTIES DISABLED true)
       endif ()
 
-      add_test (NAME H5JAM-${testname}_NONE COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5jam${tgt_file_ext}> -u testfiles/${jamfile} -i ${chkfile} ${ARGN})
+      add_test (NAME H5JAM-${testname}_NONE COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5jam> -u testfiles/${jamfile} -i ${chkfile} ${ARGN})
       set_tests_properties (H5JAM-${testname}_NONE PROPERTIES DEPENDS H5JAM-${testname}_NONE_COPY)
       if ("H5JAM-${testname}_NONE" MATCHES "${HDF5_DISABLE_TESTS_REGEX}")
         set_tests_properties (H5JAM-${testname}_NONE PROPERTIES DISABLED true)