Sync 1.14 branch with develop (#3923)

* Fix build error on freebsd (#3883)

Fixes:

checking for config freebsd12.1... no
checking for config freebsd... found
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpicc' is GNU gcc-9.2.0
compiler '/home/svcpetsc/petsc-hash-pkgs/39f577/bin/mpif90' is GNU gfortran-9.2.0
stdout: .: cannot open ./config/classic-fflags: No such file or directory

* Correct CMake command and example packaging (#3888)

* Feat: Hashpin sensitive dependencies on GitHub Actions and enable Dependabot to update them monthly (#3892)

* feat: hashpin sensitive dependencies on GHAs

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

* feat: enable dependabot for monthly updates on GHA

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

---------

Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>

* Some changes to portal links when they could be found on docs.hdfgroup.org, and changed the helpdesk link to help.hdfgroup.org (#3893)

* Updated some portal links to go directly to docs.hdfgroup. 

* Fixed some portal and help desk links

* Add variable option syncing for examples (#3885)

* Add period(.) at the end of the sentence for consistency. (#3897)

* Remove redundant backslash character from comment. (#3899)

* Disable doxygen as errors for netcdf (#3900)

* disable building doxygen for netcdf test

* Doc versions (#3903)

* Added missing \since tags to H5D.

* Committing clang-format changes

* Fixed H5T version info.

* Committing clang-format changes

* Added missing version info to H5E.

* Committing clang-format changes

* Added version info to H5F public APIs.

* Committing clang-format changes

* Added missing H5Z public API version info.

* Added missing version info to H5G public APIs

* Added missing version info to H5I public API.

* Added missing version info to H5 public APIs

* Committing clang-format changes

* Added missing version info to H5P public APIs

* Added missing version info to H5R public APIs

* Fix comment error.

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Change Trouble Shooting to Troubleshooting (#3905)

* Implement optimized support for vector I/O in Subfiling VFD (#3896)

Vector I/O requests are now processed within a single
set of I/O call batches, rather than each I/O vector
entry (tuple constructed from the types, addrs, sizes
and bufs arrays) being processed individually. This allows I/O to be
more efficiently parallelized among the I/O concentrator processes
during large I/O requests.

* Fixed some calculations and add test cases for issues spotted from review

* Removed a variable that was compensating for previous miscalculations

* Add 'warning density' computation to the warnhist script (#3910)

* Add 'warning density' computation to the warnhist script, along with several
cleanups to it.   Add "--enable-show-all-warnings" configure (and CMake)
option to disable compiler diagnostic suppression (and therefore show all the
otherwise suppressed compiler diagnostics), disabled by default.  Clean up
a buncn of misc. warnings.

Signed-off-by: Quincey Koziol <qkoziol@amazon.com>

* Added H5Fdelete_f with test (#3912)

* New Fortran Examples added (#3916)

* added subfiling example

* Added filtered writes with no selection example

* Version and space corrections.

* Restore H5_VERSION definition in configure.ac.

* renamed defined H5_VERS* to avoid conflicts (#3926)

1 files changed, 2 insertions, 2 deletions

diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt
index 3e7c6c2..5c0075c 100644
--- a/tools/test/h5repack/CMakeLists.txt
+++ b/tools/test/h5repack/CMakeLists.txt
@@ -6,7 +6,7 @@ project (HDF5_TOOLS_TEST_H5REPACK C)
 # --------------------------------------------------------------------
 add_executable (testh5repack_detect_szip ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c)
 target_include_directories (testh5repack_detect_szip
-    PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_INCLUDE_DIRS};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+    PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_ROOT_DIR}/lib;${HDF5_SRC_INCLUDE_DIRS};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
 )
 if (BUILD_STATIC_LIBS)
   TARGET_C_PROPERTIES (testh5repack_detect_szip STATIC)
@@ -29,7 +29,7 @@ set (REPACK_COMMON_SOURCES
 )
 add_executable (h5repacktest ${REPACK_COMMON_SOURCES} ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/h5repacktst.c)
 target_include_directories (h5repacktest
-    PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_INCLUDE_DIRS};${HDF5_TEST_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
+    PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_ROOT_DIR}/lib;${HDF5_SRC_INCLUDE_DIRS};${HDF5_TEST_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>"
 )
 if (BUILD_STATIC_LIBS)
   TARGET_C_PROPERTIES (h5repacktest STATIC)