diff options
author | Dana Robinson <derobins@hdfgroup.org> | 2022-04-13 21:17:29 (GMT) |
---|---|---|
committer | Dana Robinson <derobins@hdfgroup.org> | 2022-04-13 21:17:29 (GMT) |
commit | cabc39c3e197e2591449d2604bfee26465fb60e1 (patch) | |
tree | d5f39f5f5965584bf9bf49646a2af617adfd3e4e /tools/test/h5repack | |
parent | 7355f4c505092a7a85474b47f18d5206028e2c95 (diff) | |
parent | ab69f5df770ee3cc6cd6c81d905a5317b894a002 (diff) | |
download | hdf5-feature/coding_standards.zip hdf5-feature/coding_standards.tar.gz hdf5-feature/coding_standards.tar.bz2 |
Merge branch 'develop' into feature/coding_standardsfeature/coding_standards
Diffstat (limited to 'tools/test/h5repack')
64 files changed, 5541 insertions, 2871 deletions
diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt index 92b61fc..0b90750 100644 --- a/tools/test/h5repack/CMakeLists.txt +++ b/tools/test/h5repack/CMakeLists.txt @@ -1,12 +1,12 @@ -cmake_minimum_required (VERSION 3.10) +cmake_minimum_required (VERSION 3.12) project (HDF5_TOOLS_TEST_H5REPACK C) # -------------------------------------------------------------------- -# Add h5Repack test executables +# Add h5repack test executables # -------------------------------------------------------------------- add_executable (testh5repack_detect_szip ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c) target_include_directories (testh5repack_detect_szip - PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" + PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" ) if (NOT ONLY_SHARED_LIBS) TARGET_C_PROPERTIES (testh5repack_detect_szip STATIC) @@ -17,6 +17,7 @@ else () endif () set_target_properties (testh5repack_detect_szip PROPERTIES FOLDER tools) +# These are the same files used by the h5repack tool set (REPACK_COMMON_SOURCES ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_copy.c ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_filters.c @@ -28,7 +29,7 @@ set (REPACK_COMMON_SOURCES ) add_executable (h5repacktest ${REPACK_COMMON_SOURCES} ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/h5repacktst.c) target_include_directories (h5repacktest - PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" + PRIVATE "${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_SRC_DIR};${HDF5_TEST_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" ) if (NOT ONLY_SHARED_LIBS) TARGET_C_PROPERTIES (h5repacktest STATIC) @@ -51,17 +52,25 @@ if (BUILD_SHARED_LIBS) set (H5REPACK_TOOL_PLUGIN_LIB_VTARGET ${H5REPACK_TOOL_PLUGIN_LIB_VCORENAME}) add_library (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c) - target_include_directories (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") + target_include_directories (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} SHARED) - target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET}) + target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_LIBSH_TARGET}) H5_SET_LIB_OPTIONS (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} ${H5REPACK_TOOL_PLUGIN_LIB_NAME} SHARED "LIB") add_library (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} SHARED dynlib_vrpk.c) - target_include_directories (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") + target_include_directories (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") TARGET_C_PROPERTIES (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} SHARED) - target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET}) + target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE ${HDF5_LIBSH_TARGET}) H5_SET_LIB_OPTIONS (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} ${H5REPACK_TOOL_PLUGIN_LIB_VNAME} SHARED "LIB") + #----------------------------------------------------------------------------- + # Add Target to clang-format + #----------------------------------------------------------------------------- + if (HDF5_ENABLE_FORMATTERS) + clang_format (HDF5_TOOLS_TEST_H5REPACK_PLUGIN_FORMAT ${H5REPACK_TOOL_PLUGIN_LIB_TARGET}) + clang_format (HDF5_TOOLS_TEST_H5REPACK_VPLUGIN_FORMAT ${H5REPACK_TOOL_PLUGIN_LIB_VTARGET}) + endif () + # make plugins dir file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins") #----------------------------------------------------------------------------- @@ -85,4 +94,26 @@ if (BUILD_SHARED_LIBS) ) endif () -include (CMakeTests.cmake) +# -------------------------------------------------------------------- +# Add the h5repack test executable +# -------------------------------------------------------------------- +if (HDF5_BUILD_GENERATORS AND NOT ONLY_SHARED_LIBS) + add_executable (h5repackgentest ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/h5repackgentest.c) + target_include_directories (h5repackgentest PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>") + TARGET_C_PROPERTIES (h5repackgentest STATIC) + target_link_libraries (h5repackgentest PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) + set_target_properties (h5repackgentest PROPERTIES FOLDER generator/tools) + + #----------------------------------------------------------------------------- + # Add Target to clang-format + #----------------------------------------------------------------------------- + if (HDF5_ENABLE_FORMATTERS) + clang_format (HDF5_TOOLS_TEST_H5REPACK_FORMAT h5repackgentest) + endif () + + #add_test (NAME h5repackgentest COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repackgentest>) +endif () + +if (HDF5_TEST_TOOLS AND HDF5_TEST_SERIAL) + include (CMakeTests.cmake) +endif () diff --git a/tools/test/h5repack/CMakeTests.cmake b/tools/test/h5repack/CMakeTests.cmake index a28a282..09648ff 100644 --- a/tools/test/h5repack/CMakeTests.cmake +++ b/tools/test/h5repack/CMakeTests.cmake @@ -5,7 +5,7 @@ # This file is part of HDF5. The full HDF5 copyright notice, including # terms governing use, modification, and redistribution, is contained in # the COPYING file, which can be found at the root of the source code -# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# distribution tree, or in https://www.hdfgroup.org/licenses. # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # @@ -26,10 +26,23 @@ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_deflate.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_early.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_ext.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_f32le.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_f32le_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_f32le_ex.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fill.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_filters.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fletcher.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_hlink.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_1d.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_1d_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_1d_ex-1.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_1d_ex.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_2d.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_2d_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_2d_ex.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_3d.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_3d_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_int32le_3d_ex.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layouto.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout2.h5 @@ -38,12 +51,20 @@ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_named_dtypes.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_nested_8bit_enum.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_nested_8bit_enum_deflated.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_CVE-2018-17432.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_CVE-2018-14460.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_nbit.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_objs.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_refs.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_shuffle.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_soffset.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_szip.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex-0.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex-1.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex-2.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex-3.dat + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_uint8be_ex.h5 # fsm ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_aggr.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fsm_aggr_nopersist.h5 @@ -53,6 +74,14 @@ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_paged_persist.h5 # h5diff/testfile ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_attr1.h5 + # tools/testfiles for external links + ${HDF5_TOOLS_DIR}/testfiles/tsoftlinks.h5 + ${HDF5_TOOLS_DIR}/testfiles/textlinkfar.h5 + ${HDF5_TOOLS_DIR}/testfiles/textlinksrc.h5 + ${HDF5_TOOLS_DIR}/testfiles/textlinktar.h5 + ${HDF5_TOOLS_DIR}/testfiles/textlink.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_trg.h5 # tools/testfiles ${HDF5_TOOLS_DIR}/testfiles/tfamily00000.h5 ${HDF5_TOOLS_DIR}/testfiles/tfamily00001.h5 @@ -66,6 +95,9 @@ ${HDF5_TOOLS_DIR}/testfiles/tfamily00009.h5 ${HDF5_TOOLS_DIR}/testfiles/tfamily00010.h5 ${HDF5_TOOLS_DIR}/testfiles/tordergr.h5 + # reference conversion files + ${HDF5_TOOLS_DIR}/testfiles/tattrreg.h5 + ${HDF5_TOOLS_DIR}/testfiles/tdatareg.h5 # tools/testfiles/vds ${HDF5_TOOLS_DIR}/testfiles/vds/1_a.h5 ${HDF5_TOOLS_DIR}/testfiles/vds/1_b.h5 @@ -106,6 +138,13 @@ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_version_test.h5repack_layout.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_zero.h5repack_layout.h5 ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_none.h5repack_layout.UD.h5 + # tools/testfiles for external links + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/tsoftlinks-merge.tsoftlinks.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-merge.textlinkfar.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-merge.textlinksrc.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-merge.textlinktar.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlink-merge.textlink.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5 ) set (LIST_DDL_TEST_FILES @@ -129,6 +168,28 @@ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/3_1_vds.h5-vds_chunk2x5x8-v ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/4_vds.h5-vds_compa-v ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/4_vds.h5-vds_conti-v + # refs + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/attrregion.tattrreg.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/dataregion.tdatareg.h5 + # tools/testfiles for external links + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-base.textlinkfar.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-base.textlinksrc.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-base.textlinktar.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlink-base.textlink.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/tsoftlinks-base.tsoftlinks.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src-base.h5copy_extlinks_src.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-prune.textlinkfar.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-prune.textlinksrc.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-prune.textlinktar.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlink-prune.textlink.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/tsoftlinks-prune.tsoftlinks.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-mergeprune.textlinkfar.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-mergeprune.textlinksrc.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-mergeprune.textlinktar.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlink-mergeprune.textlink.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5 ) foreach (h5_file ${LIST_HDF5_TEST_FILES}) @@ -157,16 +218,10 @@ ############################################################################## ############################################################################## - if (NOT BUILD_SHARED_LIBS) - set (tgt_ext "") - else () - set (tgt_ext "-shared") - endif () - macro (ADD_HELP_TEST testname resultcode) # If using memchecker add tests without using scripts if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME H5REPACK-h5repack-${testname} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN}) + add_test (NAME H5REPACK-h5repack-${testname} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN}) set_tests_properties (H5REPACK-h5repack-${testname} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" ) @@ -175,7 +230,7 @@ NAME H5REPACK-h5repack-${testname} COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5repack${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack${tgt_file_ext}>" -D "TEST_ARGS:STRING=${ARGN}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=h5repack-${testname}.out" @@ -207,14 +262,14 @@ ) add_test ( NAME H5REPACK_OLD-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (H5REPACK_OLD-${testname} PROPERTIES DEPENDS H5REPACK_OLD-${testname}-clear-objects ) add_test ( NAME H5REPACK_OLD-${testname}_DFF - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_file_ext}> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (H5REPACK_OLD-${testname}_DFF PROPERTIES DEPENDS H5REPACK_OLD-${testname} @@ -242,14 +297,14 @@ ) add_test ( NAME H5REPACK-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> --enable-error-stack ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> --enable-error-stack ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (H5REPACK-${testname} PROPERTIES DEPENDS H5REPACK-${testname}-clear-objects ) add_test ( NAME H5REPACK-${testname}_DFF - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_file_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (H5REPACK-${testname}_DFF PROPERTIES DEPENDS H5REPACK-${testname} @@ -257,7 +312,7 @@ endif () endmacro () - macro (ADD_H5_CMP_TEST testname testfilter testtype resultcode resultfile) + macro (ADD_H5_FILTER_TEST testname testfilter testtype resultcode resultfile) if ("${testtype}" STREQUAL "SKIP") if (NOT HDF5_ENABLE_USING_MEMCHECKER) add_test ( @@ -271,7 +326,7 @@ if (HDF5_ENABLE_USING_MEMCHECKER) add_test ( NAME H5REPACK_CMP-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile} ) else () add_test ( @@ -285,7 +340,7 @@ NAME H5REPACK_CMP-${testname} COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5repack${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack${tgt_file_ext}>" -D "TEST_ARGS:STRING=${ARGN};${resultfile};out-${testname}.${resultfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${resultfile}-${testname}.out" @@ -315,7 +370,7 @@ if (HDF5_ENABLE_USING_MEMCHECKER) add_test ( NAME H5REPACK_MASK-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile} ) set_tests_properties (H5REPACK_MASK-${testname} PROPERTIES FIXTURES_REQUIRED clear_h5repack @@ -332,7 +387,7 @@ NAME H5REPACK_MASK-${testname} COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5repack${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack${tgt_file_ext}>" -D "TEST_ARGS:STRING=${ARGN};${resultfile};out-${testname}.${resultfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${resultfile}-${testname}.out" @@ -366,7 +421,7 @@ ) add_test ( NAME H5REPACK_DMP-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile} ) set_tests_properties (H5REPACK_DMP-${testname} PROPERTIES DEPENDS H5REPACK_DMP-${testname}-clear-objects @@ -376,7 +431,7 @@ NAME H5REPACK_DMP-h5dump-${testname} COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_file_ext}>" -D "TEST_ARGS:STRING=-q;creation_order;-pH;out-${testname}.${resultfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${resultfile}-${testname}.out" @@ -391,6 +446,48 @@ endif () endmacro () + macro (ADD_H5_DIFF_TEST testname testtype resultcode testfile) + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_DIFF-${testname} + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}" + ) + set_property(TEST H5REPACK_DIFF-${testname} PROPERTY DISABLED) + endif () + else () + add_test ( + NAME H5REPACK_DIFF-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove testfiles/out-${testname}.${testfile} + ) + set_tests_properties (H5REPACK_DIFF-${testname}-clear-objects PROPERTIES + FIXTURES_REQUIRED clear_h5repack + ) + add_test ( + NAME H5REPACK_DIFF-${testname} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> --enable-error-stack ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + set_tests_properties (H5REPACK_DIFF-${testname} PROPERTIES + DEPENDS H5REPACK_DIFF-${testname}-clear-objects + ) + add_test ( + NAME H5REPACK_DIFF-${testname}_DFF + COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5diff${tgt_file_ext}>" + -D "TEST_ARGS:STRING=-v;--enable-error-stack;${testfile};out-${testname}.${testfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=out-${testname}.${testfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${testname}.${testfile}.tst" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5REPACK_DIFF-${testname}_DFF PROPERTIES + DEPENDS H5REPACK_DIFF-${testname} + ) + endif () + endmacro () + macro (ADD_H5_STAT_TEST testname testtype resultcode statarg resultfile) if ("${testtype}" STREQUAL "SKIP") if (NOT HDF5_ENABLE_USING_MEMCHECKER) @@ -410,7 +507,7 @@ ) add_test ( NAME H5REPACK_STAT-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${statarg}.${resultfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${statarg}.${resultfile} ) set_tests_properties (H5REPACK_STAT-${testname} PROPERTIES DEPENDS H5REPACK_STAT-${testname}-clear-objects @@ -420,7 +517,7 @@ NAME H5REPACK_STAT-h5stat-${testname} COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5stat${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5stat${tgt_file_ext}>" -D "TEST_ARGS:STRING=-S;-s;out-${statarg}.${resultfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${resultfile}-${testname}.out" @@ -455,14 +552,14 @@ ) add_test ( NAME H5REPACK_VERIFY_LAYOUT-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname} PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}-clear-objects ) add_test ( NAME H5REPACK_VERIFY_LAYOUT-${testname}_DFF - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_ext}> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_file_ext}> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname}_DFF PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname} @@ -472,7 +569,7 @@ NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_file_ext}>" -D "TEST_ARGS:STRING=-d;${testdset};-pH;out-${testname}.${testfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${testfile}-${testname}-v.out" @@ -498,7 +595,7 @@ NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_file_ext}>" -D "TEST_ARGS:STRING=-pH;out-${testname}.${testfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${testfile}-${testname}-v.out" @@ -536,7 +633,7 @@ ) add_test ( NAME H5REPACK_VERIFY_LAYOUT_VDS-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (H5REPACK_VERIFY_LAYOUT_VDS-${testname} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" @@ -546,7 +643,7 @@ NAME H5REPACK_VERIFY_LAYOUT_VDS-${testname}_DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_file_ext}>" -D "TEST_ARGS:STRING=-d;${testdset};-p;out-${testname}.${testfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${testfile}-${testname}-v.out" @@ -574,7 +671,7 @@ ) add_test ( NAME H5REPACK_VERIFY_SUPERBLOCK-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> -j;${lowbound};-k;${highbound} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> -j;${lowbound};-k;${highbound} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (H5REPACK_VERIFY_SUPERBLOCK-${testname} PROPERTIES DEPENDS H5REPACK_VERIFY_SUPERBLOCK-${testname}-clear-objects @@ -583,7 +680,7 @@ NAME H5REPACK_VERIFY_SUPERBLOCK-${testname}_DMP COMMAND "${CMAKE_COMMAND}" -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" - -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_ext}>" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump${tgt_file_ext}>" -D "TEST_ARGS:STRING=-H;-B;out-${testname}.${testfile}" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" -D "TEST_OUTPUT=${testfile}-${testname}-v.out" @@ -608,7 +705,7 @@ ) add_test ( NAME ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-${testname} - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> -j;${lowbound};-k;${highbound} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> -j;${lowbound};-k;${highbound} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} ) set_tests_properties (ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-${testname} PROPERTIES DEPENDS ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-${testname}-clear-objects @@ -619,34 +716,78 @@ macro (ADD_H5_TEST_META testname testfile) # Remove any output file left over from previous test run add_test ( - NAME H5REPACK_META-${testname}_N-clear-objects + NAME H5REPACK_META-${testname}-clear-objects COMMAND ${CMAKE_COMMAND} -E remove testfiles/out-${testname}_N.${testname}.h5 + testfiles/out-${testname}_N.${testname}.out + testfiles/out-${testname}_N.${testname}.out.err testfiles/out-${testname}_M.${testname}.h5 + testfiles/out-${testname}_M.${testname}.out + testfiles/out-${testname}_M.${testname}.out.err ) - set_tests_properties (H5REPACK_META-${testname}_N-clear-objects PROPERTIES + set_tests_properties (H5REPACK_META-${testname}-clear-objects PROPERTIES FIXTURES_REQUIRED clear_h5repack ) add_test ( NAME H5REPACK_META-${testname}_N - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5 ) set_tests_properties (H5REPACK_META-${testname}_N PROPERTIES - DEPENDS H5REPACK_META-${testname}_N-clear-objects + DEPENDS H5REPACK_META-${testname}-clear-objects + ) + add_test ( + NAME H5REPACK_META-${testname}_N_DFF + COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5diff${tgt_file_ext}>" + -D "TEST_ARGS:STRING=-v;${testfile};out-${testname}_N.${testname}.h5" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=out-${testname}_N.${testname}.out" + -D "TEST_EXPECT=0" + -D "TEST_REFERENCE=out-${testname}_N.${testname}.txt" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5REPACK_META-${testname}_N_DFF PROPERTIES + DEPENDS H5REPACK_META-${testname}_N ) add_test ( NAME H5REPACK_META-${testname}_M - COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5 ) set_tests_properties (H5REPACK_META-${testname}_M PROPERTIES - DEPENDS H5REPACK_META-${testname}_N + DEPENDS H5REPACK_META-${testname}_N_DFF ) - - add_test (NAME H5REPACK_META-${testname} COMMAND ${CMAKE_COMMAND} -E compare_files ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5 ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5) - set_tests_properties (H5REPACK_META-${testname} PROPERTIES - WILL_FAIL "true" + add_test ( + NAME H5REPACK_META-${testname}_M_DFF + COMMAND "${CMAKE_COMMAND}" + -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5diff${tgt_file_ext}>" + -D "TEST_ARGS:STRING=-v;${testfile};out-${testname}_M.${testname}.h5" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=out-${testname}_M.${testname}.out" + -D "TEST_EXPECT=0" + -D "TEST_REFERENCE=out-${testname}_M.${testname}.txt" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5REPACK_META-${testname}_M_DFF PROPERTIES DEPENDS H5REPACK_META-${testname}_M ) + add_test (NAME H5REPACK_META-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_ONEFILE=out-${testname}_N.${testname}.out" + -D "TEST_TWOFILE=out-${testname}_M.${testname}.h5" + -D "TEST_FUNCTION=LTEQ" + -P "${HDF_RESOURCES_DIR}/fileCompareTest.cmake" + ) + if (CMAKE_VERSION VERSION_LESS "3.14.0") + set_tests_properties (H5REPACK_META-${testname} PROPERTIES + DISABLED "true" + ) + endif () + set_tests_properties (H5REPACK_META-${testname} PROPERTIES + DEPENDS H5REPACK_META-${testname}_M_DFF + ) endmacro () macro (ADD_H5_UD_TEST testname resultcode resultfile) @@ -699,6 +840,104 @@ endif () endmacro () + macro (ADD_H5_EXTERNAL_TEST testname testtype testfile) + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + # canonical file = h5repack_${testfile}.h5 - preexist + # external file = h5repack_${testfile}_ex.h5 - preexist + # repacked file = h5repack_${testfile}_rp.h5 - created + # external data file = h5repack_${testfile}_ex-0.dat + if ("${testtype}" STREQUAL "SKIP") + add_test ( + NAME H5REPACK_EXTERNAL-${testname} + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}" + ) + set_property(TEST H5REPACK_EXTERNAL-${testname} PROPERTY DISABLED) + else () + add_test ( + NAME H5REPACK_EXTERNAL-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} -E remove h5repack_${testfile}_rp.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}-clear-objects PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + FIXTURES_REQUIRED clear_h5repack + ) + # make sure external data file 0 is available + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_CPY + COMMAND ${CMAKE_COMMAND} -E copy_if_different + "${PROJECT_SOURCE_DIR}/testfiles/h5repack_${testfile}_ex-0.dat" "${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex-0.dat" + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_CPY PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}-clear-objects + ) + # comparison of known files + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF1 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_file_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF1 PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_CPY + ) + # repack the external file to the repacked file + add_test ( + NAME H5REPACK_EXTERNAL-${testname} + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> --enable-error-stack ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname} PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DFF1 + ) + # comparison of repacked file to known files + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF2 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_file_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF2 PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname} + ) + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF3 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_file_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF3 PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DFF2 + ) + # invalidate external file by removing its first data file + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DATA_RMV + COMMAND ${CMAKE_COMMAND} -E remove h5repack_${testfile}_ex-0.dat + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DATA_RMV PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DFF3 + ) + # verify comparison of repacked file to known file + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF4 + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_file_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF4 PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DATA_RMV + ) + # verify comparison of repacked file to known external file fails + add_test ( + NAME H5REPACK_EXTERNAL-${testname}_DFF_FAIL + COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5diff${tgt_file_ext}> --enable-error-stack ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_rp.h5 ${PROJECT_BINARY_DIR}/testfiles/h5repack_${testfile}_ex.h5 + ) + set_tests_properties (H5REPACK_EXTERNAL-${testname}_DFF_FAIL PROPERTIES + WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles" + DEPENDS H5REPACK_EXTERNAL-${testname}_DFF4 + WILL_FAIL "true" + ) + endif () + endif () + endmacro () + ############################################################################## ############################################################################## ### T H E T E S T S ### @@ -987,7 +1226,7 @@ if (NOT USE_FILTER_DEFLATE) set (TESTTYPE "SKIP") endif () - ADD_H5_CMP_TEST (gzip_verbose_filters "O?...ing file[^\n]+\n" ${TESTTYPE} 0 ${arg}) + ADD_H5_FILTER_TEST (gzip_verbose_filters "O?...ing file[^\n]+\n" ${TESTTYPE} 0 ${arg}) ########################################################### # the following tests assume the input files have filters @@ -1302,16 +1541,26 @@ ADD_H5_TEST (bug1814 "TEST" ${FILE_REF}) # test attribute with various references (bug1797 / HDFFV-5932) -# the references in attribute of compund or vlen datatype +# the references in attribute of compound or vlen datatype ADD_H5_TEST (HDFFV-5932 "TEST" ${FILE_ATTR_REF}) -# Add test for memory leak in attirbute. This test is verified by CTEST. +# Add test for memory leak in attribute. This test is verified by CTEST. # 1. leak from vlen string # 2. leak from compound type without reference member # (HDFFV-7840, ) # Note: this test is experimental for sharing test file among tools ADD_H5_TEST (HDFFV-7840 "TEST" h5diff_attr1.h5) +# test CVE-2018-17432 fix + set (arg h5repack_CVE-2018-17432.h5 --low=1 --high=2 -f GZIP=8 -l dset1:CHUNK=5x6) + set (TESTTYPE "TEST") + ADD_H5_FILTER_TEST (HDFFV-10590 "" ${TESTTYPE} 1 ${arg}) + +# test CVE-2018-14460 fix + set (arg h5repack_CVE-2018-14460.h5) + set (TESTTYPE "TEST") + ADD_H5_FILTER_TEST (HDFFV-11223 "" ${TESTTYPE} 1 ${arg}) + # tests for metadata block size option ('-M') ADD_H5_TEST_META (meta_short h5repack_layout.h5 -M 8192) ADD_H5_TEST_META (meta_long h5repack_layout.h5 --metadata_block_size=8192) @@ -1351,6 +1600,12 @@ endif () ADD_H5_VERIFY_VDS (vds_conti ${TESTTYPE} 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI) +################################################################ +# reference new api conversions +############################################################### +ADD_H5_DMP_TEST (attrregion "TEST" 0 tattrreg.h5) +ADD_H5_DMP_TEST (dataregion "TEST" 0 tdatareg.h5) + ############################################################################## ### V E R S I O N B O U N D S T E S T S ############################################################################## @@ -1364,6 +1619,53 @@ ADD_H5_VERIFY_SUPERBLOCK (SB_IS_3 h5repack_layout.h5 2 2 3) ADD_H5_VERIFY_INVALIDBOUNDS (latest_latest_invalid bounds_latest_latest.h5 0 1) ############################################################################## +### E X T E R N A L S T O R A G E T E S T S +############################################################################## +ADD_H5_EXTERNAL_TEST (ext_f32le "TEST" f32le -l CONTI) +ADD_H5_EXTERNAL_TEST (ext_int32le_1d "TEST" int32le_1d -l CONTI) +ADD_H5_EXTERNAL_TEST (ext_int32le_2d "TEST" int32le_2d -l CONTI) +ADD_H5_EXTERNAL_TEST (ext_int32le_3d "TEST" int32le_3d -l CONTI) +ADD_H5_EXTERNAL_TEST (ext_uint8be "TEST" uint8be -l CONTI) + +############################################################################## +### E X T E R N A L L I N K T E S T S +############################################################################## +### HDFFV-11128 needs fixed to enable the following test +#ADD_H5_DMP_TEST (h5copy_extlinks_src-base "TEST" 0 h5copy_extlinks_src.h5 --enable-error-stack) +ADD_H5_DMP_TEST (tsoftlinks-base "TEST" 0 tsoftlinks.h5 --enable-error-stack) +ADD_H5_DMP_TEST (textlink-base "TEST" 0 textlink.h5 --enable-error-stack) +ADD_H5_DMP_TEST (textlinkfar-base "TEST" 0 textlinkfar.h5 --enable-error-stack) +ADD_H5_DMP_TEST (textlinksrc-base "TEST" 0 textlinksrc.h5 --enable-error-stack) +ADD_H5_DMP_TEST (textlinktar-base "TEST" 0 textlinktar.h5 --enable-error-stack) + +ADD_H5_DIFF_TEST (h5copy_extlinks_src-merge "TEST" 0 h5copy_extlinks_src.h5 --merge) +ADD_H5_DIFF_TEST (tsoftlinks-merge "TEST" 1 tsoftlinks.h5 --merge) +ADD_H5_DIFF_TEST (textlink-merge "TEST" 0 textlink.h5 --merge) +### HDFFV-11128 needs fixed to enable the following test +#ADD_H5_DIFF_TEST (textlinkfar-merge "TEST" 1 textlinkfar.h5 --merge) +### HDFFV-11128 needs fixed to enable the following test +#ADD_H5_DIFF_TEST (textlinksrc-merge "TEST" 1 textlinksrc.h5 --merge) +### HDFFV-11128 needs fixed to enable the following test +#ADD_H5_DIFF_TEST (textlinktar-merge "TEST" 1 textlinktar.h5 --merge) + +ADD_H5_DMP_TEST (h5copy_extlinks_src-prune "TEST" 0 h5copy_extlinks_src.h5 --prune --enable-error-stack) +ADD_H5_DMP_TEST (tsoftlinks-prune "TEST" 0 tsoftlinks.h5 --prune --enable-error-stack) +ADD_H5_DMP_TEST (textlink-prune "TEST" 0 textlink.h5 --prune --enable-error-stack) +ADD_H5_DMP_TEST (textlinkfar-prune "TEST" 0 textlinkfar.h5 --prune --enable-error-stack) +ADD_H5_DMP_TEST (textlinksrc-prune "TEST" 0 textlinksrc.h5 --prune --enable-error-stack) +ADD_H5_DMP_TEST (textlinktar-prune "TEST" 0 textlinktar.h5 --prune --enable-error-stack) + +ADD_H5_DMP_TEST (h5copy_extlinks_src-mergeprune "TEST" 0 h5copy_extlinks_src.h5 --merge --prune --enable-error-stack) +ADD_H5_DMP_TEST (tsoftlinks-mergeprune "TEST" 0 tsoftlinks.h5 --merge --prune --enable-error-stack) +ADD_H5_DMP_TEST (textlink-mergeprune "TEST" 0 textlink.h5 --merge --prune --enable-error-stack) +### HDFFV-11128 needs fixed to enable the following test +#ADD_H5_DMP_TEST (textlinkfar-mergeprune "TEST" 0 textlinkfar.h5 --merge --prune --enable-error-stack) +### HDFFV-11128 needs fixed to enable the following test +#ADD_H5_DMP_TEST (textlinksrc-mergeprune "TEST" 0 textlinksrc.h5 --merge --prune --enable-error-stack) +### HDFFV-11128 needs fixed to enable the following test +#ADD_H5_DMP_TEST (textlinktar-mergeprune "TEST" 0 textlinktar.h5 --merge --prune --enable-error-stack) + +############################################################################## ### P L U G I N T E S T S ############################################################################## if (BUILD_SHARED_LIBS) diff --git a/tools/test/h5repack/CMakeVFDTests.cmake b/tools/test/h5repack/CMakeVFDTests.cmake index c1a280b..f8ac10b 100644 --- a/tools/test/h5repack/CMakeVFDTests.cmake +++ b/tools/test/h5repack/CMakeVFDTests.cmake @@ -5,7 +5,7 @@ # This file is part of HDF5. The full HDF5 copyright notice, including # terms governing use, modification, and redistribution, is contained in # the COPYING file, which can be found at the root of the source code -# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# distribution tree, or in https://www.hdfgroup.org/licenses. # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # @@ -15,20 +15,7 @@ ### T E S T I N G ### ############################################################################## ############################################################################## - -set (VFD_LIST - sec2 - stdio - core - core_paged - split - multi - family -) - -if (DIRECT_VFD) - set (VFD_LIST ${VFD_LIST} direct) -endif () +H5_CREATE_VFD_DIR() ############################################################################## ############################################################################## @@ -38,7 +25,6 @@ endif () macro (ADD_VFD_TEST vfdname resultcode) if (NOT HDF5_ENABLE_USING_MEMCHECKER) - file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/${vfdname}") add_test ( NAME H5REPACK-${vfdname}-h5repacktest-clear-objects COMMAND ${CMAKE_COMMAND} -E remove diff --git a/tools/test/h5repack/Makefile.am b/tools/test/h5repack/Makefile.am index 59d7a6a..dbd8478 100644 --- a/tools/test/h5repack/Makefile.am +++ b/tools/test/h5repack/Makefile.am @@ -6,7 +6,7 @@ # This file is part of HDF5. The full HDF5 copyright notice, including # terms governing use, modification, and redistribution, is contained in # the COPYING file, which can be found at the root of the source code -# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# distribution tree, or in https://www.hdfgroup.org/licenses. # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. ## @@ -22,10 +22,12 @@ include $(top_srcdir)/config/commence.am AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib -I$(top_srcdir)/tools/src/h5repack # Test programs and scripts +TEST_PROG=h5repackgentest TEST_SCRIPT=h5repack.sh noinst_PROGRAMS=h5repacktst testh5repack_detect_szip +check_PROGRAMS=$(TEST_PROG) SCRIPT_DEPEND=../../src/h5repack/h5repack$(EXEEXT) h5repacktst$(EXEEXT) if HAVE_SHARED_CONDITIONAL if USE_PLUGINS_CONDITIONAL @@ -40,7 +42,7 @@ LDADD=../../src/h5repack/libh5repack.la $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) testh5repack_detect_szip_SOURCES=testh5repack_detect_szip.c -h5repacktst_SOURCES=h5repacktst.c +h5repacktst_SOURCES=h5repacktst.c if HAVE_SHARED_CONDITIONAL @@ -57,7 +59,8 @@ endif # Temporary files. *.h5 are generated by h5repack. They should # copied to the testfiles/ directory if update is required. -CHECK_CLEANFILES+=*.h5 *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 +# *.dat files may be created by h5repackgentest. +CHECK_CLEANFILES+=*.h5 *.dat *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 DISTCLEANFILES=h5repack.sh h5repack_plugin.sh include $(top_srcdir)/config/conclude.am diff --git a/tools/test/h5repack/dynlib_rpk.c b/tools/test/h5repack/dynlib_rpk.c index 29c3eae..bef032a 100644 --- a/tools/test/h5repack/dynlib_rpk.c +++ b/tools/test/h5repack/dynlib_rpk.c @@ -5,7 +5,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -20,24 +20,32 @@ #include <stdio.h> #include "H5PLextern.h" -#define H5Z_FILTER_DYNLIB1 257 +#define H5Z_FILTER_DYNLIB1 257 -static size_t H5Z_filter_dynlib1(unsigned int flags, size_t cd_nelmts, - const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf); +static size_t H5Z_filter_dynlib1(unsigned int flags, size_t cd_nelmts, const unsigned int *cd_values, + size_t nbytes, size_t *buf_size, void **buf); /* This message derives from H5Z */ const H5Z_class2_t H5Z_DYNLIB1[1] = {{ - H5Z_CLASS_T_VERS, /* H5Z_class_t version */ - H5Z_FILTER_DYNLIB1, /* Filter id number */ - 1, 1, /* Encoding and decoding enabled */ - "dynlib1", /* Filter name for debugging */ - NULL, /* The "can apply" callback */ - NULL, /* The "set local" callback */ - (H5Z_func_t)H5Z_filter_dynlib1, /* The actual filter function */ + H5Z_CLASS_T_VERS, /* H5Z_class_t version */ + H5Z_FILTER_DYNLIB1, /* Filter id number */ + 1, 1, /* Encoding and decoding enabled */ + "dynlib1", /* Filter name for debugging */ + NULL, /* The "can apply" callback */ + NULL, /* The "set local" callback */ + H5Z_filter_dynlib1, /* The actual filter function */ }}; -H5PL_type_t H5PLget_plugin_type(void) {return H5PL_TYPE_FILTER;} -const void *H5PLget_plugin_info(void) {return H5Z_DYNLIB1;} +H5PL_type_t +H5PLget_plugin_type(void) +{ + return H5PL_TYPE_FILTER; +} +const void * +H5PLget_plugin_info(void) +{ + return H5Z_DYNLIB1; +} /*------------------------------------------------------------------------- * Function: H5Z_filter_dynlib1 @@ -57,39 +65,37 @@ const void *H5PLget_plugin_info(void) {return H5Z_DYNLIB1;} *------------------------------------------------------------------------- */ static size_t -H5Z_filter_dynlib1(unsigned int flags, size_t cd_nelmts, - const unsigned int *cd_values, size_t nbytes, - size_t *buf_size, void **buf) +H5Z_filter_dynlib1(unsigned int flags, size_t cd_nelmts, const unsigned int *cd_values, size_t nbytes, + size_t *buf_size, void **buf) { - int *int_ptr = (int *)*buf; /* Pointer to the data values */ - size_t buf_left = *buf_size; /* Amount of data buffer left to process */ - int add_on = 0; + int * int_ptr = (int *)*buf; /* Pointer to the data values */ + size_t buf_left = *buf_size; /* Amount of data buffer left to process */ + int add_on = 0; /* Check for the correct number of parameters */ - if(cd_nelmts == 0) + if (cd_nelmts == 0) return 0; /* Check that permanent parameters are set correctly */ - if(cd_values[0] > 9) + if (cd_values[0] > 9) return 0; add_on = (int)cd_values[0]; - if(flags & H5Z_FLAG_REVERSE) { /*read*/ - /* Substract the "add on" value to all the data values */ - while(buf_left > 0) { + if (flags & H5Z_FLAG_REVERSE) { /*read*/ + /* Subtract the "add on" value to all the data values */ + while (buf_left > 0) { *int_ptr++ -= add_on; buf_left -= sizeof(int); - } /* end while */ - } /* end if */ + } /* end while */ + } /* end if */ else { /*write*/ /* Add the "add on" value to all the data values */ - while(buf_left > 0) { + while (buf_left > 0) { *int_ptr++ += add_on; buf_left -= sizeof(int); } /* end while */ - } /* end else */ + } /* end else */ return nbytes; } /* end H5Z_filter_dynlib1() */ - diff --git a/tools/test/h5repack/dynlib_vrpk.c b/tools/test/h5repack/dynlib_vrpk.c index 06d90ff..a45de65 100644 --- a/tools/test/h5repack/dynlib_vrpk.c +++ b/tools/test/h5repack/dynlib_vrpk.c @@ -5,7 +5,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -17,26 +17,35 @@ #include <stdio.h> #include "H5PLextern.h" -#define H5Z_FILTER_DYNLIB4 260 +#define H5Z_FILTER_DYNLIB4 260 -#define PUSH_ERR(func, minor, str) H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, H5E_ERR_CLS, H5E_PLUGIN, minor, str) +#define PUSH_ERR(func, minor, str) \ + H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, H5E_ERR_CLS, H5E_PLUGIN, minor, str) -static size_t H5Z_filter_dynlib4(unsigned int flags, size_t cd_nelmts, - const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf); +static size_t H5Z_filter_dynlib4(unsigned int flags, size_t cd_nelmts, const unsigned int *cd_values, + size_t nbytes, size_t *buf_size, void **buf); /* This message derives from H5Z */ const H5Z_class2_t H5Z_DYNLIB4[1] = {{ - H5Z_CLASS_T_VERS, /* H5Z_class_t version */ - H5Z_FILTER_DYNLIB4, /* Filter id number */ - 1, 1, /* Encoding and decoding enabled */ - "dynlib4", /* Filter name for debugging */ - NULL, /* The "can apply" callback */ - NULL, /* The "set local" callback */ - (H5Z_func_t)H5Z_filter_dynlib4, /* The actual filter function */ + H5Z_CLASS_T_VERS, /* H5Z_class_t version */ + H5Z_FILTER_DYNLIB4, /* Filter id number */ + 1, 1, /* Encoding and decoding enabled */ + "dynlib4", /* Filter name for debugging */ + NULL, /* The "can apply" callback */ + NULL, /* The "set local" callback */ + H5Z_filter_dynlib4, /* The actual filter function */ }}; -H5PL_type_t H5PLget_plugin_type(void) {return H5PL_TYPE_FILTER;} -const void *H5PLget_plugin_info(void) {return H5Z_DYNLIB4;} +H5PL_type_t +H5PLget_plugin_type(void) +{ + return H5PL_TYPE_FILTER; +} +const void * +H5PLget_plugin_info(void) +{ + return H5Z_DYNLIB4; +} /*------------------------------------------------------------------------- * Function: H5Z_filter_dynlib4 @@ -53,50 +62,48 @@ const void *H5PLget_plugin_info(void) {return H5Z_DYNLIB4;} *------------------------------------------------------------------------- */ static size_t -H5Z_filter_dynlib4(unsigned int flags, size_t cd_nelmts, - const unsigned int *cd_values, size_t nbytes, - size_t *buf_size, void **buf) +H5Z_filter_dynlib4(unsigned int flags, size_t cd_nelmts, const unsigned int *cd_values, size_t nbytes, + size_t *buf_size, void **buf) { - int *int_ptr = (int *)*buf; /* Pointer to the data values */ - size_t buf_left = *buf_size; /* Amount of data buffer left to process */ - int add_on = 0; + int * int_ptr = (int *)*buf; /* Pointer to the data values */ + size_t buf_left = *buf_size; /* Amount of data buffer left to process */ + int add_on = 0; unsigned ver_info[3]; /* Check for the library version */ - if(H5get_libversion(&ver_info[0], &ver_info[1], &ver_info[2]) < 0) { + if (H5get_libversion(&ver_info[0], &ver_info[1], &ver_info[2]) < 0) { PUSH_ERR("dynlib4", H5E_CALLBACK, "H5get_libversion"); - return(0); + return (0); } /* Check for the correct number of parameters */ - if(cd_nelmts == 0) - return(0); + if (cd_nelmts == 0) + return (0); /* Check that permanent parameters are set correctly */ - if(cd_values[0] > 9) - return(0); + if (cd_values[0] > 9) + return (0); - if(ver_info[0] != cd_values[1] || ver_info[1] != cd_values[2]) { + if (ver_info[0] != cd_values[1] || ver_info[1] != cd_values[2]) { PUSH_ERR("dynlib4", H5E_CALLBACK, "H5get_libversion does not match"); - return(0); + return (0); } add_on = (int)cd_values[0]; - if(flags & H5Z_FLAG_REVERSE) { /*read*/ - /* Substract the "add on" value to all the data values */ - while(buf_left > 0) { + if (flags & H5Z_FLAG_REVERSE) { /*read*/ + /* Subtract the "add on" value to all the data values */ + while (buf_left > 0) { *int_ptr++ -= add_on; buf_left -= sizeof(int); - } /* end while */ - } /* end if */ + } /* end while */ + } /* end if */ else { /*write*/ /* Add the "add on" value to all the data values */ - while(buf_left > 0) { + while (buf_left > 0) { *int_ptr++ += add_on; buf_left -= sizeof(int); } /* end while */ - } /* end else */ + } /* end else */ return nbytes; } /* end H5Z_filter_dynlib4() */ - diff --git a/tools/test/h5repack/h5repack.sh.in b/tools/test/h5repack/h5repack.sh.in index c515786..a241ea8 100644 --- a/tools/test/h5repack/h5repack.sh.in +++ b/tools/test/h5repack/h5repack.sh.in @@ -7,7 +7,7 @@ # This file is part of HDF5. The full HDF5 copyright notice, including # terms governing use, modification, and redistribution, is contained in # the COPYING file, which can be found at the root of the source code -# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# distribution tree, or in https://www.hdfgroup.org/licenses. # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # @@ -92,10 +92,18 @@ $SRC_H5REPACK_TESTFILES/h5repack_attr_refs.h5 $SRC_H5REPACK_TESTFILES/h5repack_deflate.h5 $SRC_H5REPACK_TESTFILES/h5repack_early.h5 $SRC_H5REPACK_TESTFILES/h5repack_ext.h5 +$SRC_H5REPACK_TESTFILES/h5repack_f32le.h5 +$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex.h5 $SRC_H5REPACK_TESTFILES/h5repack_fill.h5 $SRC_H5REPACK_TESTFILES/h5repack_filters.h5 $SRC_H5REPACK_TESTFILES/h5repack_fletcher.h5 $SRC_H5REPACK_TESTFILES/h5repack_hlink.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d.h5 +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex.h5 $SRC_H5REPACK_TESTFILES/h5repack_layout.h5 $SRC_H5REPACK_TESTFILES/h5repack_layouto.h5 $SRC_H5REPACK_TESTFILES/h5repack_layout2.h5 @@ -109,13 +117,29 @@ $SRC_H5REPACK_TESTFILES/h5repack_refs.h5 $SRC_H5REPACK_TESTFILES/h5repack_shuffle.h5 $SRC_H5REPACK_TESTFILES/h5repack_soffset.h5 $SRC_H5REPACK_TESTFILES/h5repack_szip.h5 +$SRC_H5REPACK_TESTFILES/h5repack_uint8be.h5 +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex.h5 +########fsm#files######## $SRC_H5REPACK_TESTFILES/h5repack_aggr.h5 $SRC_H5REPACK_TESTFILES/h5repack_fsm_aggr_nopersist.h5 $SRC_H5REPACK_TESTFILES/h5repack_fsm_aggr_persist.h5 $SRC_H5REPACK_TESTFILES/h5repack_none.h5 $SRC_H5REPACK_TESTFILES/h5repack_paged_nopersist.h5 $SRC_H5REPACK_TESTFILES/h5repack_paged_persist.h5 +########h5diff/testfile######## $SRC_H5DIFF_TESTFILES/h5diff_attr1.h5 +########test#HDFFV-10590######## +$SRC_H5REPACK_TESTFILES/h5repack_CVE-2018-17432.h5 +$SRC_H5REPACK_TESTFILES/h5repack_CVE-2018-14460.h5 +########tools/testfiles#for#external#links######## +$SRC_TOOLS_TESTFILES/tsoftlinks.h5 +$SRC_TOOLS_TESTFILES/textlinkfar.h5 +$SRC_TOOLS_TESTFILES/textlinksrc.h5 +$SRC_TOOLS_TESTFILES/textlinktar.h5 +$SRC_TOOLS_TESTFILES/textlink.h5 +$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src.h5 +$SRC_H5REPACK_TESTFILES/h5copy_extlinks_trg.h5 +########tools/testfiles######## $SRC_TOOLS_TESTFILES/tfamily00000.h5 $SRC_TOOLS_TESTFILES/tfamily00001.h5 $SRC_TOOLS_TESTFILES/tfamily00002.h5 @@ -128,6 +152,8 @@ $SRC_TOOLS_TESTFILES/tfamily00008.h5 $SRC_TOOLS_TESTFILES/tfamily00009.h5 $SRC_TOOLS_TESTFILES/tfamily00010.h5 $SRC_TOOLS_TESTFILES/tordergr.h5 +########reference#conversion#files######## +########tools/testfiles/vds######## $SRC_TOOLS_TESTFILES/vds/1_a.h5 $SRC_TOOLS_TESTFILES/vds/1_b.h5 $SRC_TOOLS_TESTFILES/vds/1_c.h5 @@ -158,24 +184,73 @@ $SRC_H5REPACK_TESTFILES/h5repack-help.txt $SRC_H5REPACK_TESTFILES/h5repack_ext.bin $SRC_H5REPACK_TESTFILES/ublock.bin $SRC_H5REPACK_TESTFILES/h5repack.info +########dat#files######## +$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-1.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-0.dat +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-1.dat +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-2.dat +$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-3.dat +############### $SRC_H5REPACK_TESTFILES/crtorder.tordergr.h5.ddl $SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl $SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl -$SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst -$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst $SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl -$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst -$SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl -$SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl -$SRC_H5REPACK_TESTFILES/3_1_vds.h5-vds_chunk2x5x8-v.ddl -$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_compa-v.ddl -$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_conti-v.ddl +########fsm#files######## $SRC_H5REPACK_TESTFILES/SP.h5repack_fsm_aggr_nopersist.h5.ddl $SRC_H5REPACK_TESTFILES/S.h5repack_fsm_aggr_persist.h5.ddl $SRC_H5REPACK_TESTFILES/STG.h5repack_none.h5.ddl $SRC_H5REPACK_TESTFILES/GS.h5repack_paged_nopersist.h5.ddl $SRC_H5REPACK_TESTFILES/SP.h5repack_paged_persist.h5.ddl $SRC_H5REPACK_TESTFILES/SPT.h5repack_aggr.h5.ddl +########vds#files######## +$SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl +$SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl +$SRC_H5REPACK_TESTFILES/3_1_vds.h5-vds_chunk2x5x8-v.ddl +$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_compa-v.ddl +$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_conti-v.ddl +########refs#files######## +$SRC_H5REPACK_TESTFILES/attrregion.tattrreg.h5.ddl +$SRC_H5REPACK_TESTFILES/dataregion.tdatareg.h5.ddl +########external#links#files######## +$SRC_H5REPACK_TESTFILES/textlinkfar-base.textlinkfar.h5.ddl +$SRC_H5REPACK_TESTFILES/textlinksrc-base.textlinksrc.h5.ddl +$SRC_H5REPACK_TESTFILES/textlinktar-base.textlinktar.h5.ddl +$SRC_H5REPACK_TESTFILES/textlink-base.textlink.h5.ddl +$SRC_H5REPACK_TESTFILES/tsoftlinks-base.tsoftlinks.h5.ddl +$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-base.h5copy_extlinks_src.h5.ddl +$SRC_H5REPACK_TESTFILES/textlinkfar-merge.textlinkfar.h5.tst +$SRC_H5REPACK_TESTFILES/textlinksrc-merge.textlinksrc.h5.tst +$SRC_H5REPACK_TESTFILES/textlinktar-merge.textlinktar.h5.tst +$SRC_H5REPACK_TESTFILES/textlink-merge.textlink.h5.tst +$SRC_H5REPACK_TESTFILES/tsoftlinks-merge.tsoftlinks.h5.tst +$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst +$SRC_H5REPACK_TESTFILES/textlinkfar-prune.textlinkfar.h5.ddl +$SRC_H5REPACK_TESTFILES/textlinksrc-prune.textlinksrc.h5.ddl +$SRC_H5REPACK_TESTFILES/textlinktar-prune.textlinktar.h5.ddl +$SRC_H5REPACK_TESTFILES/textlink-prune.textlink.h5.ddl +$SRC_H5REPACK_TESTFILES/tsoftlinks-prune.tsoftlinks.h5.ddl +$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl +$SRC_H5REPACK_TESTFILES/textlinkfar-mergeprune.textlinkfar.h5.ddl +$SRC_H5REPACK_TESTFILES/textlinksrc-mergeprune.textlinksrc.h5.ddl +$SRC_H5REPACK_TESTFILES/textlinktar-mergeprune.textlinktar.h5.ddl +$SRC_H5REPACK_TESTFILES/textlink-mergeprune.textlink.h5.ddl +$SRC_H5REPACK_TESTFILES/tsoftlinks-mergeprune.tsoftlinks.h5.ddl +$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl +########tst#files######## +$SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst +$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst +########external#links#tst#files######## +$SRC_H5REPACK_TESTFILES/tsoftlinks-merge.tsoftlinks.h5.tst +$SRC_H5REPACK_TESTFILES/textlinkfar-merge.textlinkfar.h5.tst +$SRC_H5REPACK_TESTFILES/textlinksrc-merge.textlinksrc.h5.tst +$SRC_H5REPACK_TESTFILES/textlinktar-merge.textlinktar.h5.tst +$SRC_H5REPACK_TESTFILES/textlink-merge.textlink.h5.tst +$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst " # @@ -252,6 +327,12 @@ SKIP() { echo " -SKIP-" } +############################################################################## +############################################################################## +### T H E T E S T S M A C R O S ### +############################################################################## +############################################################################## + # Call the h5diff tool # DIFFTEST() @@ -444,7 +525,7 @@ VERIFY_LAYOUT_ALL() #--------------------------------- # check the layout from a dataset - # check if the other layouts still exsit + # check if the other layouts still exist VERIFY "layouts" ( cd $TESTDIR @@ -599,8 +680,95 @@ VERIFY_INVALIDBOUNDS() } # end of VERIFY_INVALIDBOUNDS +# ----------------------------------------------------------------------------- +# Expect h5diff to fail +# Use only by VERIFY_EXTERNAL_CONSOLIDATION +# ----------------------------------------------------------------------------- +DIFFFAIL() +{ + VERIFY h5diff unequal $@ + ( + cd $TESTDIR + $RUNSERIAL $H5DIFF_BIN -q "$@" + ) + RET=$? + if [ $RET -eq 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi +} + +# ----------------------------------------------------------------------------- +# Catchall test for repacking with external files +# Loops over all (internally-listed) cases and applies the given arguments +# to h5repack. +# Each test file family must be listed in the for loop at the start of the +# 'function'. +# Expects case files to be of format: +# + h5repack_<NAME>.h5 +# + h5repack_<NAME>_ex.h5 +# + h5repack_<NAME>_ex-<N>.dat +# ...where NAME is part of the internal list, and N is a positive decimal +# number; multiple external files (*.dat) are allowed per file, but they must +# follow the pattern and be in contiguous numerical sequence starting at 0. +# ----------------------------------------------------------------------------- +VERIFY_EXTERNAL_CONSOLIDATION() +{ + for name in f32le int32le_1d int32le_2d int32le_3d uint8be + do + basename="h5repack_${name}" + base_ext="${basename}_ex" + base_rpkg="${basename}_rp" + canonical="${basename}.h5" + external="${base_ext}.h5" + ex_dat="${base_ext}-0.dat" + ex_dat_mv="__${ext_dat}" + repacked="${base_rpkg}.h5" + prev_nerrors=$nerrors + + TESTING external consolidation on $name with h5repack $@ + echo " . . ." + + # baseline comparison of known files + DIFFTEST $canonical $external + + # repack the external file, verify integrity + ( cd $TESTDIR + $H5REPACK_BIN $@ $external $repacked + ) + DIFFTEST $repacked $canonical + DIFFTEST $repacked $external + + # invalidate external file by moving its first data file; verify + ( cd $TESTDIR + mv $ex_dat $ex_dat_mv + ) + DIFFFAIL $canonical $external + DIFFFAIL $repacked $external + DIFFTEST $canonical $repacked + + # reset test state for re-runs with different h5repack arguments + ( cd $TESTDIR + mv $ex_dat_mv $ex_dat + rm $repacked + ) + + # flag if any of the above checks failed + if [ $prev_nerrors != $nerrors ] + then + echo ". . . *FAILED*" + nerrors="`expr $prev_nerrors + 1`" + else + echo ". . . PASSED" + fi + done +} # end VERIFY_EXTERNAL_CONSOLIDATION + +# ----------------------------------------------------------------------------- # same as TOOLTEST, but it uses the old syntax -i input_file -o output_file -# +# ----------------------------------------------------------------------------- TOOLTEST0() { infile=$2 @@ -640,7 +808,7 @@ TOOLTEST1() TESTING $H5REPACK $@ ( cd $TESTDIR - $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + $ENVCMD $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile ) RET=$? if [ $RET != 0 ] ; then @@ -700,6 +868,160 @@ TOOLTESTV() rm -f $outfile } +# Same as TOOLTEST, but expects h5repack fails +# +TOOLTEST_FAIL() +{ + infile=$1 + outfile=$2 + expect="$TESTDIR/$2-$1.ddl" + actual="$TESTDIR/$2-$1.out" + actual_err="$TESTDIR/$2-$1.err" + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $ENVCMD $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) >&$actual + RET=$? + + # Normally h5repack of files tested with this function are expected + # to return not 0, but if the command results in "Segmentation fault" + # or "core dumped" it is a failure regardless of the return value. + failure=`grep -e 'Segmentation fault' -e 'core dumped' $actual` + if [ "$failure" != "" ]; then + nerrors="`expr $nerrors + 1`" + echo " FAILED" + echo " $failure" + else + if [ $RET == 0 ] ; then + nerrors="`expr $nerrors + 1`" + echo " FAILED" + else + echo " PASSED" + fi + fi + rm -f $outfile +} + +# This is same as TOOLTESTV() with comparing display output +# with actual filename swapped +# +TOOLTESTSV() +{ + expect="$TESTDIR/$1.$2.tst" + actual="$TESTDIR/`basename $2 .ddl`.out" + actual_err="$TESTDIR/`basename $2 .ddl`.err" + + infile=$2 + outfile=out-$1.$2 + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) >$actual 2>$actual_err + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + VERIFY h5diff equal $@ + ( + cd $TESTDIR + $RUNSERIAL $H5DIFF_BIN -v $infile $outfile + ) >$actual 2>$actual_err + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi + fi + + # display output compare + STDOUT_FILTER $actual + cat $actual_err >> $actual + + VERIFY output from $H5REPACK $@ + if cmp -s $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.tst) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /' + fi + + rm -f $actual $actual_err + rm -f $outfile +} + +# This is same as TOOLTESTSV() but expects a diff fail +# +TOOLFAILSV() +{ + expect="$TESTDIR/$1.$2.tst" + actual="$TESTDIR/`basename $2 .ddl`.out" + actual_err="$TESTDIR/`basename $2 .ddl`.err" + + infile=$2 + outfile=out-$1.$2 + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) >$actual 2>$actual_err + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + VERIFY h5diff unequal $@ + ( + cd $TESTDIR + $RUNSERIAL $H5DIFF_BIN -v $infile $outfile + ) >$actual 2>$actual_err + RET=$? + if [ $RET == 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi + fi + + # display output compare + STDOUT_FILTER $actual + cat $actual_err >> $actual + + VERIFY output from $H5REPACK $@ + if cmp -s $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.tst) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /' + fi + + rm -f $actual $actual_err + rm -f $outfile +} + # same as TOOLTESTV but filters error stack output and compares to an error file # Extract file name, line number, version and thread IDs because they may be different # ADD_H5ERR_MASK_TEST @@ -1251,44 +1573,28 @@ TOOLTEST_STAT SPT $arg # layout options (these files have no filters) ######################################################### VERIFY_LAYOUT_DSET dset2_chunk_20x10 h5repack_layout.h5 dset2 CHUNKED --layout dset2:CHUNK=20x10 - VERIFY_LAYOUT_ALL chunk_20x10 h5repack_layout.h5 CHUNKED -l CHUNK=20x10 - VERIFY_LAYOUT_DSET dset2_conti h5repack_layout.h5 dset2 CONTIGUOUS -l dset2:CONTI - VERIFY_LAYOUT_ALL conti h5repack_layout.h5 CONTIGUOUS -l CONTI - VERIFY_LAYOUT_DSET dset2_compa h5repack_layout.h5 dset2 COMPACT -l dset2:COMPA - VERIFY_LAYOUT_ALL compa h5repack_layout.h5 COMPACT -l COMPA - TOOLTESTM dset2_chunk_20x10-errstk h5repack_layout.h5 --layout=dset2:CHUNK=20x10x5 --enable-error-stack ################################################################ # layout conversions (file has no filters) ############################################################### - VERIFY_LAYOUT_DSET dset_compa_conti h5repack_layout.h5 dset_compact CONTIGUOUS -l dset_compact:CONTI - VERIFY_LAYOUT_DSET dset_compa_chunk h5repack_layout.h5 dset_compact CHUNKED -l dset_compact:CHUNK=2x5 - VERIFY_LAYOUT_DSET dset_compa_compa h5repack_layout.h5 dset_compact COMPACT -l dset_compact:COMPA - VERIFY_LAYOUT_DSET dset_conti_compa h5repack_layout.h5 dset_contiguous COMPACT -l dset_contiguous:COMPA - VERIFY_LAYOUT_DSET dset_conti_chunk h5repack_layout.h5 dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6 - VERIFY_LAYOUT_DSET dset_conti_conti h5repack_layout.h5 dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI - VERIFY_LAYOUT_DSET chunk_compa h5repack_layout.h5 dset_chunk COMPACT -l dset_chunk:COMPA - VERIFY_LAYOUT_DSET chunk_conti h5repack_layout.h5 dset_chunk CONTIGUOUS -l dset_chunk:CONTI - VERIFY_LAYOUT_DSET chunk_18x13 h5repack_layout.h5 dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13 # test convert small size dataset ( < 1k) to compact layout without -m VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -l contig_small:COMPA - VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA #--------------------------------------------------------------------------- @@ -1316,6 +1622,7 @@ VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk # chunk dim is bigger than dataset dim. ( dset size < 64k ) VERIFY_LAYOUT_DSET error1 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE # chunk dim is bigger than dataset dim. ( dset size > 64k ) + VERIFY_LAYOUT_DSET error2 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE # chunk dims are smaller than dataset dims. ( dset size < 64k ) @@ -1330,7 +1637,6 @@ TOOLTEST error4 h5repack_layout3.h5 -f NONE # (dset size < 64K) and with unlimited max dims on a condition as follow. # (HDFFV-8214) #-------------------------------------------------------------------------- - # chunk dim is bigger than dataset dim. should succeed. VERIFY_LAYOUT_DSET ckdim_biger h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI # chunk dim is smaller than dataset dim. should succeed. @@ -1361,7 +1667,6 @@ else fi # several global filters - arg="h5repack_layout.h5 --filter GZIP=1 --filter SHUF" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg @@ -1408,16 +1713,24 @@ TOOLTEST1 family tfamily%05d.h5 TOOLTEST bug1814 h5repack_refs.h5 # test attribute with various references (bug1797 / HDFFV-5932) -# the references in attribute of compund or vlen datatype +# the references in attribute of compound or vlen datatype TOOLTEST HDFFV-5932 h5repack_attr_refs.h5 -# Add test for memory leak in attirbute. This test is verified by CTEST. +# Add test for memory leak in attribute. This test is verified by CTEST. # 1. leak from vlen string # 2. leak from compound type without reference member # (HDFFV-7840, ) # Note: this test is experimental for sharing test file among tools TOOLTEST HDFFV-7840 h5diff_attr1.h5 +# test HDFFV-10590 +arg="h5repack_CVE-2018-17432.h5 h5repack_CVE-2018-17432_out.h5 --low=1 --high=2 -f GZIP=8 -l dset1:CHUNK=5x6" +TOOLTEST_FAIL $arg + +# test HDFFV-11223 +arg="h5repack_CVE-2018-14460.h5 h5repack_CVE-2018-14460_out.h5" +TOOLTEST_FAIL $arg + # tests for metadata block size option TOOLTEST_META meta_short h5repack_layout.h5 -M 8192 TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192 @@ -1457,9 +1770,15 @@ else VERIFY_LAYOUT_VDS vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI fi -######################################################### -# Testing version bounds -######################################################### +################################################################ +# reference new api conversions +############################################################### +#TOOLTEST_DUMP attrregion tattrreg.h5 +#TOOLTEST_DUMP dataregion tdatareg.h5 + +############################################################################## +### V E R S I O N B O U N D S T E S T S +############################################################################## # -j 0 -k 2, superblock will be 0 VERIFY_SUPERBLOCK 0 2 0 h5repack_layout.h5 -j 0 -k 2 h5repack_layout.h5 # -j 1 -k 2, superblock will be 2 @@ -1469,6 +1788,49 @@ VERIFY_SUPERBLOCK 2 2 3 h5repack_layout.h5 -j 2 -k 2 h5repack_layout.h5 # -j 0 -k 1, file cannot be opened VERIFY_INVALIDBOUNDS 0 1 bounds_latest_latest.h5 +############################################################################## +### E X T E R N A L S T O R A G E T E S T S +############################################################################## +VERIFY_EXTERNAL_CONSOLIDATION -l CONTI + +############################################################################## +### E X T E R N A L L I N K T E S T S +############################################################################## +### HDFFV-11128 needs fixed to enable the following test +#TOOLTEST_DUMP h5copy_extlinks_src-base h5copy_extlinks_src.h5 --enable-error-stack +TOOLTEST_DUMP tsoftlinks-base tsoftlinks.h5 --enable-error-stack +TOOLTEST_DUMP textlink-base textlink.h5 --enable-error-stack +TOOLTEST_DUMP textlinkfar-base textlinkfar.h5 --enable-error-stack +TOOLTEST_DUMP textlinksrc-base textlinksrc.h5 --enable-error-stack +TOOLTEST_DUMP textlinktar-base textlinktar.h5 --enable-error-stack + +TOOLTESTSV h5copy_extlinks_src-merge h5copy_extlinks_src.h5 --merge +TOOLFAILSV tsoftlinks-merge tsoftlinks.h5 --merge +TOOLTESTSV textlink-merge textlink.h5 --merge +### HDFFV-11128 needs fixed to enable the following test +#TOOLFAILSV textlinkfar-merge textlinkfar.h5 --merge +### HDFFV-11128 needs fixed to enable the following test +#TOOLFAILSV textlinksrc-merge textlinksrc.h5 --merge +### HDFFV-11128 needs fixed to enable the following test +#TOOLFAILSV textlinktar-merge textlinktar.h5 --merge + +TOOLTEST_DUMP h5copy_extlinks_src-prune h5copy_extlinks_src.h5 --prune --enable-error-stack +TOOLTEST_DUMP tsoftlinks-prune tsoftlinks.h5 --prune --enable-error-stack +TOOLTEST_DUMP textlink-prune textlink.h5 --prune --enable-error-stack +TOOLTEST_DUMP textlinkfar-prune textlinkfar.h5 --prune --enable-error-stack +TOOLTEST_DUMP textlinksrc-prune textlinksrc.h5 --prune --enable-error-stack +TOOLTEST_DUMP textlinktar-prune textlinktar.h5 --prune --enable-error-stack + +TOOLTEST_DUMP h5copy_extlinks_src-mergeprune h5copy_extlinks_src.h5 --merge --prune --enable-error-stack +TOOLTEST_DUMP tsoftlinks-mergeprune tsoftlinks.h5 --merge --prune --enable-error-stack +TOOLTEST_DUMP textlink-mergeprune textlink.h5 --merge --prune --enable-error-stack +### HDFFV-11128 needs fixed to enable the following test +#TOOLTEST_DUMP textlinkfar-mergeprune textlinkfar.h5 --merge --prune --enable-error-stack +### HDFFV-11128 needs fixed to enable the following test +#TOOLTEST_DUMP textlinksrc-mergeprune textlinksrc.h5 --merge --prune --enable-error-stack +### HDFFV-11128 needs fixed to enable the following test +#TOOLTEST_DUMP textlinktar-mergeprune textlinktar.h5 --merge --prune --enable-error-stack + # Clean up temporary files/directories CLEAN_TESTFILES_AND_TESTDIR diff --git a/tools/test/h5repack/h5repack_plugin.sh.in b/tools/test/h5repack/h5repack_plugin.sh.in index 5efd9e8..0331d85 100644 --- a/tools/test/h5repack/h5repack_plugin.sh.in +++ b/tools/test/h5repack/h5repack_plugin.sh.in @@ -6,7 +6,7 @@ # This file is part of HDF5. The full HDF5 copyright notice, including # terms governing use, modification, and redistribution, is contained in # the COPYING file, which can be found at the root of the source code -# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# distribution tree, or in https://www.hdfgroup.org/licenses. # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # diff --git a/tools/test/h5repack/h5repackgentest.c b/tools/test/h5repack/h5repackgentest.c new file mode 100644 index 0000000..c025891 --- /dev/null +++ b/tools/test/h5repack/h5repackgentest.c @@ -0,0 +1,350 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* For generating files for verifying h5repack with external storage. . . + * + * Each case file should follow the format of: + * + h5repack_<NAME>.h5 + * + h5repack_<NAME>_ex.h5 + * + h5repack_<NAME>_ex-<N>.dat + * ...where NAME idenfities the type, and N is a positive decimal number; + * multiple external files (*.dat) are allowed per file, but they must + * follow the pattern and be in contiguous numerical sequence starting at 0. + * + * Each file typename must be added to the listing for + * `VERIFY_EXTERNAL_CONSOLIDATION` in h5repack.sh + * + * There is no restriction on the name, number, or structure of datasets and + * groups in HDF5 file. + * + * The included datatypes should be more than adequate to verify the correctness + * of the behavior -- if one type can be consolidated from external storage, + * then they all can. + */ + +#include "hdf5.h" +#include "H5private.h" + +#define MAX_NAME_SIZE 256 +#define FILE_INT32LE_1 "h5repack_int32le_1d" +#define FILE_INT32LE_2 "h5repack_int32le_2d" +#define FILE_INT32LE_3 "h5repack_int32le_3d" +#define FILE_UINT8BE "h5repack_uint8be" +#define FILE_F32LE "h5repack_f32le" + +#define H5REPACKGENTEST_OOPS \ + { \ + ret_value = -1; \ + goto done; \ + } + +#define H5REPACKGENTEST_COMMON_CLEANUP(dcpl, file, space) \ + { \ + if ((dcpl) != H5P_DEFAULT && (dcpl) != H5I_INVALID_HID) { \ + (void)H5Pclose((dcpl)); \ + } \ + if ((file) != H5I_INVALID_HID) { \ + (void)H5Fclose((file)); \ + } \ + if ((space) != H5I_INVALID_HID) { \ + (void)H5Sclose((space)); \ + } \ + } + +struct external_def { + hsize_t type_size; + unsigned n_elts_per_file; + unsigned n_elts_total; +}; + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Helper function to create and write a dataset to file. + * Returns 0 on success, -1 on failure. + */ +static int +make_dataset(hid_t file_id, const char *dset_name, hid_t mem_type_id, hid_t space_id, hid_t dcpl_id, + void *wdata) +{ + hid_t dset_id = H5I_INVALID_HID; + int ret_value = 0; + + dset_id = H5Dcreate2(file_id, dset_name, mem_type_id, space_id, H5P_DEFAULT, dcpl_id, H5P_DEFAULT); + if (dset_id == H5I_INVALID_HID) + H5REPACKGENTEST_OOPS; + + if (H5Dwrite(dset_id, mem_type_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0) + H5REPACKGENTEST_OOPS; + +done: + if (dset_id != H5I_INVALID_HID) + (void)H5Dclose(dset_id); + + return ret_value; +} /* end make_dataset() */ + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Helper function to populate the DCPL external storage list. + * Creates external files for the DCPL, with each file name following the + * convention "<filename>_ex-<num>.dat". Will append `n_external_files` to + * the filename list, with each file having space for `n_elts` items of the + * type (of size `elt_size`). The numeric inputs are not sanity-checked. + * Returns 0 on success, -1 on failure. + */ +static int +set_dcpl_external_list(hid_t dcpl, const char *filename, unsigned n_elts_per_file, unsigned n_elts_total, + hsize_t elt_size) +{ + char name[MAX_NAME_SIZE]; + unsigned n_external_files = 0; + unsigned i = 0; + + if (NULL == filename || '\0' == *filename) + return -1; + + n_external_files = n_elts_total / n_elts_per_file; + if (n_elts_total != (n_external_files * n_elts_per_file)) + return -1; + + for (i = 0; i < n_external_files; i++) { + if (HDsnprintf(name, MAX_NAME_SIZE, "%s_ex-%u.dat", filename, i) >= MAX_NAME_SIZE) + return -1; + + if (H5Pset_external(dcpl, name, 0, n_elts_per_file * elt_size) < 0) + return -1; + } + return 0; +} /* end set_dcpl_external_list() */ + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Generalized utility function to write a file with the specified data and + * dataset configuration. If `ext` is provided, will attempt to use external + * storage. + * Returns 0 on success, -1 on failure. + */ +static int +make_file(const char *basename, struct external_def *ext, hid_t type_id, hsize_t rank, hsize_t *dims, + void *wdata) +{ + char filename[MAX_NAME_SIZE]; + hid_t file_id = H5I_INVALID_HID; + hid_t dcpl_id = H5P_DEFAULT; + hid_t space_id = H5I_INVALID_HID; + int ret_value = 0; + + if (HDsnprintf(filename, MAX_NAME_SIZE, "%s%s.h5", basename, (NULL != ext) ? "_ex" : "") >= MAX_NAME_SIZE) + H5REPACKGENTEST_OOPS; + + if (NULL != ext) { + dcpl_id = H5Pcreate(H5P_DATASET_CREATE); + if (dcpl_id == H5I_INVALID_HID) + H5REPACKGENTEST_OOPS; + + if (set_dcpl_external_list(dcpl_id, basename, ext->n_elts_per_file, ext->n_elts_total, + ext->type_size) < 0) + H5REPACKGENTEST_OOPS; + } + + space_id = H5Screate_simple((int)rank, dims, NULL); + if (space_id == H5I_INVALID_HID) + H5REPACKGENTEST_OOPS; + + file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (file_id == H5I_INVALID_HID) + H5REPACKGENTEST_OOPS; + + if (make_dataset(file_id, "dset", type_id, space_id, dcpl_id, wdata) < 0) + H5REPACKGENTEST_OOPS; + +done: + H5REPACKGENTEST_COMMON_CLEANUP(dcpl_id, file_id, space_id); + return ret_value; +} /* end make_file() */ + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_int32le_1d(hbool_t external) +{ + int32_t wdata[12]; + hsize_t dims[] = {12}; + struct external_def *def_ptr = NULL; + struct external_def def = {(hsize_t)sizeof(int32_t), 6, 12}; + int32_t n = 0; + int ret_value = 0; + + /* Generate values + */ + for (n = 0; n < 12; n++) { + wdata[n] = n - 6; + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (make_file(FILE_INT32LE_1, def_ptr, H5T_STD_I32LE, 1, dims, wdata) < 0) + ret_value = -1; + + return ret_value; +} /* end generate_int32le_1d() */ + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_int32le_2d(hbool_t external) +{ + int32_t wdata[64]; + hsize_t dims[] = {8, 8}; + struct external_def *def_ptr = NULL; + struct external_def def = {(hsize_t)sizeof(int32_t), 64, 64}; + int32_t n = 0; + int ret_value = 0; + + /* Generate values + */ + for (n = 0; n < 64; n++) { + wdata[n] = n - 32; + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (make_file(FILE_INT32LE_2, def_ptr, H5T_STD_I32LE, 2, dims, wdata) < 0) + ret_value = -1; + + return ret_value; +} /* end generate_int32le_2d() */ + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_int32le_3d(hbool_t external) +{ + hsize_t dims[] = {8, 8, 8}; + int32_t wdata[512]; /* 8^3, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = {(hsize_t)sizeof(int32_t), 512, 512}; + int32_t n = 0; + int i = 0; + int j = 0; + int k = 0; + int ret_value = 0; + + /* generate values, alternating positive and negative + */ + for (i = 0, n = 0; (hsize_t)i < dims[0]; i++) { + for (j = 0; (hsize_t)j < dims[1]; j++) { + for (k = 0; (hsize_t)k < dims[2]; k++, n++) { + wdata[n] = (k + j * 512 + i * 4096) * ((n & 1) ? (-1) : (1)); + } + } + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (make_file(FILE_INT32LE_3, def_ptr, H5T_STD_I32LE, 3, dims, wdata) < 0) + ret_value = -1; + + return ret_value; +} /* end generate_int32le_3d() */ + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_uint8be(hbool_t external) +{ + hsize_t dims[] = {4, 8, 8}; + uint8_t wdata[256]; /* 4*8*8, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = {(hsize_t)sizeof(uint8_t), 64, 256}; + uint8_t n = 0; + int i = 0; + int j = 0; + int k = 0; + int ret_value = 0; + + /* Generate values, ping-pong from ends of range + */ + for (i = 0, n = 0; (hsize_t)i < dims[0]; i++) { + for (j = 0; (hsize_t)j < dims[1]; j++) { + for (k = 0; (hsize_t)k < dims[2]; k++, n++) { + wdata[n] = (uint8_t)((n & 1) ? -n : n); + } + } + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (make_file(FILE_UINT8BE, def_ptr, H5T_STD_U8BE, 3, dims, wdata) < 0) + ret_value = -1; + + return ret_value; +} /* end generate_uint8be() */ + +/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + * Returns 0 on success, -1 on failure. + */ +static int +generate_f32le(hbool_t external) +{ + hsize_t dims[] = {12, 6}; + float wdata[72]; /* 12*6, from dims */ + struct external_def *def_ptr = NULL; + struct external_def def = {(hsize_t)sizeof(float), 72, 72}; + float n = 0; + int i = 0; + int j = 0; + int k = 0; + int ret_value = 0; + + /* Generate values */ + for (i = 0, k = 0, n = 0; (hsize_t)i < dims[0]; i++) { + for (j = 0; (hsize_t)j < dims[1]; j++, k++, n++) { + wdata[k] = n * 801.1F * ((k % 5 == 1) ? (-1) : (1)); + } + } + + def_ptr = (TRUE == external) ? (&def) : NULL; + if (make_file(FILE_F32LE, def_ptr, H5T_IEEE_F32LE, 2, dims, wdata) < 0) + ret_value = -1; + + return ret_value; +} /* end generate_f32le() */ + +/* ---------------------------------------------------------------------------- + * Create files. + * Return 0 on success, nonzero on failure. + */ +int +main(void) +{ + int i = 0; + + for (i = 0; i < 2; i++) { + hbool_t external = (i & 1) ? TRUE : FALSE; + if (generate_int32le_1d(external) < 0) + HDprintf("A generate_int32le_1d failed!\n"); + + if (generate_int32le_2d(external) < 0) + HDprintf("A generate_int32le_2d failed!\n"); + + if (generate_int32le_3d(external) < 0) + HDprintf("A generate_int32le_3d failed!\n"); + + if (generate_uint8be(external) < 0) + HDprintf("A generate_uint8be failed!\n"); + + if (generate_f32le(external) < 0) + HDprintf("A generate_f32le failed!\n"); + + } /* end for external data storage or not */ + + return EXIT_SUCCESS; +} /* end main() */ diff --git a/tools/test/h5repack/h5repacktst.c b/tools/test/h5repack/h5repacktst.c index ec8df3c..8b114e4 100644 --- a/tools/test/h5repack/h5repacktst.c +++ b/tools/test/h5repack/h5repacktst.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -17,39 +17,42 @@ #include "h5tools.h" #include "h5tools_utils.h" -#define GOERROR {H5_FAILED(); goto error;} - +#define GOERROR \ + { \ + H5_FAILED(); \ + goto error; \ + } /* fill value test */ -#define FNAME0 "h5repack_fill.h5" -#define FNAME0OUT "h5repack_fill_out.h5" +#define FNAME0 "h5repack_fill.h5" +#define FNAME0OUT "h5repack_fill_out.h5" /* HDF5 objects and all dataset datatypes */ -#define FNAME1 "h5repack_objs.h5" -#define FNAME1OUT "h5repack_objs_out.h5" +#define FNAME1 "h5repack_objs.h5" +#define FNAME1OUT "h5repack_objs_out.h5" /* attributes, all datatypes */ -#define FNAME2 "h5repack_attr.h5" -#define FNAME2OUT "h5repack_attr_out.h5" +#define FNAME2 "h5repack_attr.h5" +#define FNAME2OUT "h5repack_attr_out.h5" /* hard links */ -#define FNAME3 "h5repack_hlink.h5" -#define FNAME3OUT "h5repack_hlink_out.h5" +#define FNAME3 "h5repack_hlink.h5" +#define FNAME3OUT "h5repack_hlink_out.h5" /* layout */ -#define FNAME4 "h5repack_layout.h5" -#define FNAME4OUT "h5repack_layout_out.h5" +#define FNAME4 "h5repack_layout.h5" +#define FNAME4OUT "h5repack_layout_out.h5" /* H5D_ALLOC_TIME_EARLY */ -#define FNAME5 "h5repack_early.h5" -#define FNAME5OUT "h5repack_early_out.h5" -#define FNAME6 "h5repack_early2.h5" +#define FNAME5 "h5repack_early.h5" +#define FNAME5OUT "h5repack_early_out.h5" +#define FNAME6 "h5repack_early2.h5" #ifdef H5_HAVE_FILTER_SZIP /* SZIP filter */ -#define FNAME7 "h5repack_szip.h5" -#define FNAME7OUT "h5repack_szip_out.h5" +#define FNAME7 "h5repack_szip.h5" +#define FNAME7OUT "h5repack_szip_out.h5" #endif /* GZIP filter */ -#define FNAME8 "h5repack_deflate.h5" -#define FNAME8OUT "h5repack_deflate_out.h5" +#define FNAME8 "h5repack_deflate.h5" +#define FNAME8OUT "h5repack_deflate_out.h5" /* GZIP filter */ -#define FNAME9 "h5repack_shuffle.h5" -#define FNAME9OUT "h5repack_shuffle_out.h5" +#define FNAME9 "h5repack_shuffle.h5" +#define FNAME9OUT "h5repack_shuffle_out.h5" /* Fletcher filter */ #define FNAME10 "h5repack_fletcher.h5" #define FNAME10OUT "h5repack_fletcher_out.h5" @@ -72,58 +75,55 @@ #define FNAME16 "h5repack_ub.h5" #define FNAME16OUT "h5repack_ub_out.h5" /* Named datatypes */ -#define FNAME17 "h5repack_named_dtypes.h5" -#define FNAME17OUT "h5repack_named_dtypes_out.h5" +#define FNAME17 "h5repack_named_dtypes.h5" +#define FNAME17OUT "h5repack_named_dtypes_out.h5" -#define FNAME18 "h5repack_layout2.h5" +#define FNAME18 "h5repack_layout2.h5" /* Files for testing file space paging */ -#define FSPACE_OUT "h5repack_fspace_OUT.h5" /* The output file */ -#define NELMTS(X) (sizeof(X)/sizeof(X[0])) /* # of elements */ +#define FSPACE_OUT "h5repack_fspace_OUT.h5" /* The output file */ +#define NELMTS(X) (sizeof(X) / sizeof(X[0])) /* # of elements */ const char *H5REPACK_FSPACE_FNAMES[] = { - "h5repack_latest.h5", /* 0 */ - "h5repack_default.h5", /* 1 */ - "h5repack_page_persist.h5", /* 2 */ - "h5repack_fsm_aggr_persist.h5", /* 3 */ - "h5repack_page_threshold.h5", /* 4 */ - "h5repack_fsm_aggr_threshold.h5", /* 5 */ - "h5repack_aggr.h5", /* 6 */ - "h5repack_none.h5" /* 7 */ + "h5repack_latest.h5", /* 0 */ + "h5repack_default.h5", /* 1 */ + "h5repack_page_persist.h5", /* 2 */ + "h5repack_fsm_aggr_persist.h5", /* 3 */ + "h5repack_page_threshold.h5", /* 4 */ + "h5repack_fsm_aggr_threshold.h5", /* 5 */ + "h5repack_aggr.h5", /* 6 */ + "h5repack_none.h5" /* 7 */ }; -#define FNAME_UB "ublock.bin" +#define FNAME_UB "ublock.bin" /* obj and region references */ -#define FNAME_REF "h5repack_refs.h5" +#define FNAME_REF "h5repack_refs.h5" /* obj and region references in attr of compound and vlen type */ -#define FNAME_ATTR_REF "h5repack_attr_refs.h5" +#define FNAME_ATTR_REF "h5repack_attr_refs.h5" -const char *H5REPACK_FILENAMES[] = { - "h5repack_big_out", - NULL -}; +const char *H5REPACK_FILENAMES[] = {"h5repack_big_out", NULL}; #define H5REPACK_EXTFILE "h5repack_ext.bin" /* Name of tool */ #define PROGRAMNAME "h5repacktst" -#define DIM1 40 -#define DIM2 20 -#define CDIM1 DIM1/2 -#define CDIM2 DIM2/2 -#define RANK 2 +#define DIM1 40 +#define DIM2 20 +#define CDIM1 (DIM1 / 2) +#define CDIM2 (DIM2 / 2) +#define RANK 2 /* Size of userblock (for userblock test) */ -#define USERBLOCK_SIZE 2048 +#define USERBLOCK_SIZE 2048 /* obj and region references */ -#define NAME_OBJ_DS1 "Dset1" -#define NAME_OBJ_GRP "Group" +#define NAME_OBJ_DS1 "Dset1" +#define NAME_OBJ_GRP "Group" #define NAME_OBJ_NDTYPE "NamedDatatype" -#define NAME_OBJ_DS2 "Dset2" -#define REG_REF_DS1 "Dset_REGREF" +#define NAME_OBJ_DS2 "Dset2" +#define REG_REF_DS1 "Dset_REGREF" /*------------------------------------------------------------------------- * prototypes @@ -148,21 +148,20 @@ static int make_all_filters(hid_t loc_id); static int make_fill(hid_t loc_id); static int make_big(hid_t loc_id); static int make_testfiles(void); -static int write_dset_in(hid_t loc_id,const char* dset_name,hid_t file_id,int make_diffs ); -static int write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs ); -static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *dset_name,hid_t tid,void *buf ); -static int make_dset(hid_t loc_id,const char *name,hid_t sid,hid_t dcpl,void *buf); -static int make_attr(hid_t loc_id,int rank,hsize_t *dims,const char *attr_name,hid_t tid,void *buf); +static int write_dset_in(hid_t loc_id, const char *dset_name, hid_t file_id, int make_diffs); +static int write_attr_in(hid_t loc_id, const char *dset_name, hid_t fid, int make_diffs); +static int write_dset(hid_t loc_id, int rank, hsize_t *dims, const char *dset_name, hid_t tid, void *buf); +static int make_dset(hid_t loc_id, const char *name, hid_t sid, hid_t dcpl, void *buf); +static int make_attr(hid_t loc_id, int rank, hsize_t *dims, const char *attr_name, hid_t tid, void *buf); static int make_dset_reg_ref(hid_t loc_id); static int make_external(hid_t loc_id); static int make_userblock(void); -static int verify_userblock( const char* filename); +static int verify_userblock(const char *filename); static int make_userblock_file(void); static int make_named_dtype(hid_t loc_id); static int make_references(hid_t loc_id); static int make_complex_attr_references(hid_t loc_id); - /*------------------------------------------------------------------------- * Function: main * @@ -173,18 +172,19 @@ static int make_complex_attr_references(hid_t loc_id); *------------------------------------------------------------------------- */ -int main (void) +int +main(void) { - pack_opt_t pack_options; - diff_opt_t diff_options; + pack_opt_t pack_options; + diff_opt_t diff_options; - unsigned j; /* Local index variable for testing file space */ - const char *fname; /* File name for testing file space */ + unsigned j; /* Local index variable for testing file space */ + const char *fname; /* File name for testing file space */ - h5_stat_t file_stat; - h5_stat_size_t fsize1, fsize2; /* file sizes */ -#if defined (H5_HAVE_FILTER_SZIP) - int szip_can_encode = 0; + h5_stat_t file_stat; + h5_stat_size_t fsize1, fsize2; /* file sizes */ +#if defined(H5_HAVE_FILTER_SZIP) + int szip_can_encode = 0; #endif h5tools_setprogname(PROGRAMNAME); @@ -194,8 +194,8 @@ int main (void) h5tools_init(); /* initialize */ - HDmemset(&diff_options, 0, sizeof (diff_opt_t)); - HDmemset(&pack_options, 0, sizeof (pack_opt_t)); + HDmemset(&diff_options, 0, sizeof(diff_opt_t)); + HDmemset(&pack_options, 0, sizeof(pack_opt_t)); /* run tests */ puts("Testing h5repack:"); @@ -218,155 +218,154 @@ int main (void) *------------------------------------------------------------------------- */ TESTING(" files with file space info setting--no options (-S, -P, -T, -G) are set"); - j = 0; /* #0 */ + j = 0; /* #0 */ HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); fname = H5REPACK_FSPACE_FNAMES[j]; - if(h5repack_init(&pack_options, 0, FALSE) < 0) + if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; - if(h5repack(fname, FSPACE_OUT, &pack_options) < 0) + if (h5repack(fname, FSPACE_OUT, &pack_options) < 0) GOERROR; - if(h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) + if (h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if(h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) + if (h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) GOERROR; - if(h5repack_end(&pack_options) < 0) + if (h5repack_end(&pack_options) < 0) GOERROR; PASSED(); - TESTING(" files with file space info setting--all options -S, -P, -T, -G are set"); - ++j; /* #1 */ + ++j; /* #1 */ HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); fname = H5REPACK_FSPACE_FNAMES[j]; - if(h5repack_init(&pack_options, 0, FALSE) < 0) + if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; - pack_options.fs_strategy = H5F_FSPACE_STRATEGY_NONE; - pack_options.fs_persist = -1; /* "FALSE" is set via -P 0 */ + pack_options.fs_strategy = H5F_FSPACE_STRATEGY_NONE; + pack_options.fs_persist = -1; /* "FALSE" is set via -P 0 */ pack_options.fs_threshold = 1; - pack_options.fs_pagesize = 8192; - if(h5repack(fname, FSPACE_OUT, &pack_options) < 0) + pack_options.fs_pagesize = 8192; + if (h5repack(fname, FSPACE_OUT, &pack_options) < 0) GOERROR; - if(h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) + if (h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if(h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) + if (h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) GOERROR; - if(h5repack_end(&pack_options) < 0) + if (h5repack_end(&pack_options) < 0) GOERROR; PASSED(); - TESTING(" files with file space info setting--options -S and -T are set"); - ++j; /* #2 */ + ++j; /* #2 */ HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); fname = H5REPACK_FSPACE_FNAMES[j]; - if(h5repack_init(&pack_options, 0, FALSE) < 0) + if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; - pack_options.fs_strategy = (H5F_fspace_strategy_t)-1; /* "FSM_AGGR" specified via -S FSM_AGGR */ - pack_options.fs_threshold = -1; /* "0" specified via -T 0 */ - if(h5repack(fname, FSPACE_OUT, &pack_options) < 0) + pack_options.fs_strategy = (H5F_fspace_strategy_t)-1; /* "FSM_AGGR" specified via -S FSM_AGGR */ + pack_options.fs_threshold = -1; /* "0" specified via -T 0 */ + if (h5repack(fname, FSPACE_OUT, &pack_options) < 0) GOERROR; - if(h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) + if (h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if(h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) + if (h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) GOERROR; - if(h5repack_end(&pack_options) < 0) + if (h5repack_end(&pack_options) < 0) GOERROR; PASSED(); + if (h5_using_default_driver(NULL)) { + TESTING(" files with file space info setting-- options -S and -P are set & -L"); + ++j; /* #3 */ + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + fname = H5REPACK_FSPACE_FNAMES[j]; + if (h5repack_init(&pack_options, 0, TRUE) < 0) + GOERROR; + pack_options.fs_strategy = H5F_FSPACE_STRATEGY_PAGE; /* "PAGE" specified via -S */ + pack_options.fs_persist = TRUE; + if (h5repack(fname, FSPACE_OUT, &pack_options) < 0) + GOERROR; + if (h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); - TESTING(" files with file space info setting-- options -S and -P are set & -L"); - ++j; /* #3 */ - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - fname = H5REPACK_FSPACE_FNAMES[j]; - if(h5repack_init(&pack_options, 0, TRUE) < 0) - GOERROR; - pack_options.fs_strategy = H5F_FSPACE_STRATEGY_PAGE; /* "PAGE" specified via -S */ - pack_options.fs_persist = TRUE; - if(h5repack(fname, FSPACE_OUT, &pack_options) < 0) - GOERROR; - if(h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if(h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) - GOERROR; - if(h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); - - TESTING(" files with file space info setting-- options -P and -T are set & -L"); - ++j; /* #4 */ - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - fname = H5REPACK_FSPACE_FNAMES[j]; - if(h5repack_init(&pack_options, 0, TRUE) < 0) - GOERROR; - pack_options.fs_persist = -1; /* "FALSE" is set via -P 0 */ - pack_options.fs_threshold = 2; - if(h5repack(fname, FSPACE_OUT, &pack_options) < 0) - GOERROR; - if(h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if(h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) - GOERROR; - if(h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); + TESTING(" files with file space info setting-- options -P and -T are set & -L"); + ++j; /* #4 */ + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + fname = H5REPACK_FSPACE_FNAMES[j]; + if (h5repack_init(&pack_options, 0, TRUE) < 0) + GOERROR; + pack_options.fs_persist = -1; /* "FALSE" is set via -P 0 */ + pack_options.fs_threshold = 2; + if (h5repack(fname, FSPACE_OUT, &pack_options) < 0) + GOERROR; + if (h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); - TESTING(" files with file space info setting-- options -S and -G are set & -L"); - ++j; /* #5 */ - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - fname = H5REPACK_FSPACE_FNAMES[j]; - if(h5repack_init(&pack_options, 0, TRUE) < 0) - GOERROR; - pack_options.fs_strategy = H5F_FSPACE_STRATEGY_PAGE; - pack_options.fs_pagesize = 8192; - if(h5repack(fname, FSPACE_OUT, &pack_options) < 0) - GOERROR; - if(h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if(h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) - GOERROR; - if(h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); + TESTING(" files with file space info setting-- options -S and -G are set & -L"); + ++j; /* #5 */ + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + fname = H5REPACK_FSPACE_FNAMES[j]; + if (h5repack_init(&pack_options, 0, TRUE) < 0) + GOERROR; + pack_options.fs_strategy = H5F_FSPACE_STRATEGY_PAGE; + pack_options.fs_pagesize = 8192; + if (h5repack(fname, FSPACE_OUT, &pack_options) < 0) + GOERROR; + if (h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); - TESTING(" files with file space info setting-- options -S, -P, -T, -G are set"); - ++j; /* #6 */ - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - fname = H5REPACK_FSPACE_FNAMES[j]; - if(h5repack_init(&pack_options, 0, FALSE) < 0) - GOERROR; - pack_options.fs_strategy = H5F_FSPACE_STRATEGY_NONE; - pack_options.fs_persist = -1; /* "FALSE" is set via -P 0 */ - pack_options.fs_threshold = 1; - pack_options.fs_pagesize = 8192; - if(h5repack(fname, FSPACE_OUT, &pack_options) < 0) - GOERROR; - if(h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if(h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) - GOERROR; - if(h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); + TESTING(" files with file space info setting-- options -S, -P, -T, -G are set"); + ++j; /* #6 */ + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + fname = H5REPACK_FSPACE_FNAMES[j]; + if (h5repack_init(&pack_options, 0, FALSE) < 0) + GOERROR; + pack_options.fs_strategy = H5F_FSPACE_STRATEGY_NONE; + pack_options.fs_persist = -1; /* "FALSE" is set via -P 0 */ + pack_options.fs_threshold = 1; + pack_options.fs_pagesize = 8192; + if (h5repack(fname, FSPACE_OUT, &pack_options) < 0) + GOERROR; + if (h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); - TESTING(" files with file space info setting-- options -S, -T, -G are set & -L"); - ++j; /* #7 */ - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - fname = H5REPACK_FSPACE_FNAMES[j]; - if(h5repack_init(&pack_options, 0, TRUE) < 0) - GOERROR; - pack_options.fs_strategy = H5F_FSPACE_STRATEGY_AGGR; - pack_options.fs_threshold = 1; - pack_options.fs_pagesize = 4096; - if(h5repack(fname, FSPACE_OUT, &pack_options) < 0) - GOERROR; - if(h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if(h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) - GOERROR; - if(h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); + TESTING(" files with file space info setting-- options -S, -T, -G are set & -L"); + ++j; /* #7 */ + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + fname = H5REPACK_FSPACE_FNAMES[j]; + if (h5repack_init(&pack_options, 0, TRUE) < 0) + GOERROR; + pack_options.fs_strategy = H5F_FSPACE_STRATEGY_AGGR; + pack_options.fs_threshold = 1; + pack_options.fs_pagesize = 4096; + if (h5repack(fname, FSPACE_OUT, &pack_options) < 0) + GOERROR; + if (h5diff(fname, FSPACE_OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(fname, FSPACE_OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); + } /*------------------------------------------------------------------------- * file with fill values @@ -382,32 +381,32 @@ int main (void) GOERROR; if (h5repack_verify(FNAME0, FNAME0OUT, &pack_options) <= 0) GOERROR; - if (h5repack_cmp_pl(FNAME0, FNAME0OUT) <= 0) + if (h5repack_cmp_pl(FNAME0, pack_options.fin_fapl, FNAME0OUT, pack_options.fout_fapl) <= 0) GOERROR; if (h5repack_end(&pack_options) < 0) GOERROR; PASSED(); - /*------------------------------------------------------------------------- * file with all kinds of dataset datatypes *------------------------------------------------------------------------- */ - TESTING(" copy of datasets (all datatypes)"); - if (h5repack_init(&pack_options, 0, FALSE) < 0) - GOERROR; - if (h5repack(FNAME1, FNAME1OUT, &pack_options) < 0) - GOERROR; - if (h5diff(FNAME1, FNAME1OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if (h5repack_verify(FNAME1, FNAME1OUT, &pack_options) <= 0) - GOERROR; - if (h5repack_cmp_pl(FNAME1, FNAME1OUT) <= 0) - GOERROR; - if (h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); - + if (!h5_using_parallel_driver(NULL)) { + TESTING(" copy of datasets (all datatypes)"); + if (h5repack_init(&pack_options, 0, FALSE) < 0) + GOERROR; + if (h5repack(FNAME1, FNAME1OUT, &pack_options) < 0) + GOERROR; + if (h5diff(FNAME1, FNAME1OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(FNAME1, FNAME1OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_cmp_pl(FNAME1, pack_options.fin_fapl, FNAME1OUT, pack_options.fout_fapl) <= 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); + } /*------------------------------------------------------------------------- * file with attributes @@ -422,7 +421,7 @@ int main (void) GOERROR; if (h5repack_verify(FNAME2, FNAME2OUT, &pack_options) <= 0) GOERROR; - if (h5repack_cmp_pl(FNAME2, FNAME2OUT) <= 0) + if (h5repack_cmp_pl(FNAME2, pack_options.fin_fapl, FNAME2OUT, pack_options.fout_fapl) <= 0) GOERROR; if (h5repack_end(&pack_options) < 0) GOERROR; @@ -441,7 +440,7 @@ int main (void) GOERROR; if (h5repack_verify(FNAME3, FNAME3OUT, &pack_options) <= 0) GOERROR; - if (h5repack_cmp_pl(FNAME3, FNAME3OUT) <= 0) + if (h5repack_cmp_pl(FNAME3, pack_options.fin_fapl, FNAME3OUT, pack_options.fout_fapl) <= 0) GOERROR; if (h5repack_end(&pack_options) < 0) GOERROR; @@ -565,7 +564,7 @@ int main (void) TESTING(" adding szip filter"); -#if defined (H5_HAVE_FILTER_SZIP) +#if defined(H5_HAVE_FILTER_SZIP) if (h5tools_can_encode(H5Z_FILTER_SZIP) > 0) szip_can_encode = 1; @@ -575,7 +574,7 @@ int main (void) */ if (szip_can_encode) { - if (h5repack_init (&pack_options, 0, FALSE) < 0) + if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; if (h5repack_addfilter("dset2:SZIP=8,EC", &pack_options) < 0) GOERROR; @@ -587,7 +586,7 @@ int main (void) GOERROR; if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) GOERROR; - if (h5repack_end (&pack_options) < 0) + if (h5repack_end(&pack_options) < 0) GOERROR; PASSED(); @@ -599,14 +598,13 @@ int main (void) SKIPPED(); #endif - /*------------------------------------------------------------------------- * test all objects option *------------------------------------------------------------------------- */ TESTING(" adding szip filter to all"); -#if defined (H5_HAVE_FILTER_SZIP) +#if defined(H5_HAVE_FILTER_SZIP) if (szip_can_encode) { if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; @@ -630,8 +628,7 @@ int main (void) SKIPPED(); #endif - - TESTING(" addding shuffle filter"); + TESTING(" adding shuffle filter"); /*------------------------------------------------------------------------- * test an individual object option @@ -660,7 +657,7 @@ int main (void) *------------------------------------------------------------------------- */ - TESTING(" addding shuffle filter to all"); + TESTING(" adding shuffle filter to all"); if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; @@ -679,7 +676,6 @@ int main (void) PASSED(); - TESTING(" adding checksum filter"); /*------------------------------------------------------------------------- @@ -726,7 +722,6 @@ int main (void) PASSED(); - TESTING(" filter queue fletcher, shuffle, deflate, szip"); /*------------------------------------------------------------------------- @@ -743,7 +738,7 @@ int main (void) if (h5repack_addfilter("dset1:SHUF", &pack_options) < 0) GOERROR; -#if defined (H5_HAVE_FILTER_SZIP) +#if defined(H5_HAVE_FILTER_SZIP) if (szip_can_encode) { if (h5repack_addfilter("dset1:SZIP=8,NN", &pack_options) < 0) GOERROR; @@ -766,7 +761,6 @@ int main (void) PASSED(); - TESTING(" adding layout chunked (old format)"); /*------------------------------------------------------------------------- @@ -782,7 +776,7 @@ int main (void) GOERROR; if (h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options ) <= 0) + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) GOERROR; if (h5repack_end(&pack_options) < 0) GOERROR; @@ -804,7 +798,7 @@ int main (void) GOERROR; if (h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options ) <= 0) + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) GOERROR; if (h5repack_end(&pack_options) < 0) GOERROR; @@ -933,7 +927,6 @@ int main (void) PASSED(); - TESTING(" layout compact to contiguous conversion"); /*------------------------------------------------------------------------- @@ -986,9 +979,9 @@ int main (void) GOERROR; if (h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) GOERROR; - if (h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) >0) + if (h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options)<= 0) + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) GOERROR; if (h5repack_end(&pack_options) < 0) GOERROR; @@ -1110,7 +1103,6 @@ int main (void) GOERROR; PASSED(); - /*------------------------------------------------------------------------- * the following tests assume the input files have filters * FNAME7 @@ -1122,7 +1114,7 @@ int main (void) */ TESTING(" copy of szip filter"); -#if defined (H5_HAVE_FILTER_SZIP) +#if defined(H5_HAVE_FILTER_SZIP) if (szip_can_encode) { if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; @@ -1132,7 +1124,7 @@ int main (void) GOERROR; if (h5repack_verify(FNAME7, FNAME7OUT, &pack_options) <= 0) GOERROR; - if (h5repack_cmp_pl(FNAME7, FNAME7OUT) <= 0) + if (h5repack_cmp_pl(FNAME7, pack_options.fin_fapl, FNAME7OUT, pack_options.fout_fapl) <= 0) GOERROR; if (h5repack_end(&pack_options) < 0) GOERROR; @@ -1148,7 +1140,7 @@ int main (void) TESTING(" removing szip filter"); -#if defined (H5_HAVE_FILTER_SZIP) +#if defined(H5_HAVE_FILTER_SZIP) if (szip_can_encode) { if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; @@ -1172,7 +1164,6 @@ int main (void) SKIPPED(); #endif - TESTING(" copy of deflate filter"); #ifdef H5_HAVE_FILTER_DEFLATE @@ -1192,7 +1183,6 @@ int main (void) SKIPPED(); #endif - TESTING(" removing deflate filter"); #ifdef H5_HAVE_FILTER_DEFLATE @@ -1214,8 +1204,6 @@ int main (void) SKIPPED(); #endif - - TESTING(" copy of shuffle filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1231,7 +1219,6 @@ int main (void) PASSED(); - TESTING(" removing shuffle filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1249,7 +1236,6 @@ int main (void) PASSED(); - TESTING(" copy of fletcher filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1265,7 +1251,6 @@ int main (void) PASSED(); - TESTING(" removing fletcher filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1283,7 +1268,6 @@ int main (void) PASSED(); - TESTING(" copy of nbit filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1299,7 +1283,6 @@ int main (void) PASSED(); - TESTING(" removing nbit filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1317,7 +1300,6 @@ int main (void) PASSED(); - TESTING(" adding nbit filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1328,14 +1310,13 @@ int main (void) GOERROR; if (h5diff(FNAME12, FNAME12OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if (h5repack_verify(FNAME12, FNAME12OUT, &pack_options)<= 0) + if (h5repack_verify(FNAME12, FNAME12OUT, &pack_options) <= 0) GOERROR; if (h5repack_end(&pack_options) < 0) GOERROR; PASSED(); - TESTING(" copy of scaleoffset filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1351,7 +1332,6 @@ int main (void) PASSED(); - TESTING(" removing scaleoffset filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1369,7 +1349,6 @@ int main (void) PASSED(); - TESTING(" adding scaleoffset filter"); if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1387,7 +1366,6 @@ int main (void) PASSED(); - /*------------------------------------------------------------------------- * file with all filters * dset_all @@ -1399,7 +1377,7 @@ int main (void) */ TESTING(" filter conversion from deflate to szip"); -#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) +#if defined(H5_HAVE_FILTER_SZIP) && defined(H5_HAVE_FILTER_DEFLATE) if (szip_can_encode) { if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1426,7 +1404,7 @@ int main (void) TESTING(" filter conversion from szip to deflate"); -#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) +#if defined(H5_HAVE_FILTER_SZIP) && defined(H5_HAVE_FILTER_DEFLATE) if (szip_can_encode) { if (h5repack_init(&pack_options, 0, FALSE) < 0) @@ -1451,7 +1429,6 @@ int main (void) SKIPPED(); #endif - /*------------------------------------------------------------------------- * test the NONE global option *------------------------------------------------------------------------- @@ -1459,7 +1436,7 @@ int main (void) TESTING(" removing all filters"); -#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) +#if defined(H5_HAVE_FILTER_SZIP) && defined(H5_HAVE_FILTER_DEFLATE) if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; @@ -1514,50 +1491,53 @@ int main (void) GOERROR; PASSED(); - /*------------------------------------------------------------------------- - * test file with userblock - *------------------------------------------------------------------------- - */ - TESTING(" file with userblock"); - if(h5repack_init(&pack_options, 0, FALSE) < 0) - GOERROR; - if(h5repack(FNAME16, FNAME16OUT, &pack_options) < 0) - GOERROR; - if(h5diff(FNAME16, FNAME16OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if(h5repack_verify(FNAME16, FNAME16OUT, &pack_options) <= 0) - GOERROR; - if(verify_userblock(FNAME16OUT) < 0) - GOERROR; - if(h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); + if (h5_using_default_driver(NULL)) { + /*------------------------------------------------------------------------- + * test file with userblock + *------------------------------------------------------------------------- + */ + TESTING(" file with userblock"); + if (h5repack_init(&pack_options, 0, FALSE) < 0) + GOERROR; + if (h5repack(FNAME16, FNAME16OUT, &pack_options) < 0) + GOERROR; + if (h5diff(FNAME16, FNAME16OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(FNAME16, FNAME16OUT, &pack_options) <= 0) + GOERROR; + if (verify_userblock(FNAME16OUT) < 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); + } /*------------------------------------------------------------------------- * test --latest options *------------------------------------------------------------------------- */ - TESTING(" latest file format options"); - if (h5repack_init(&pack_options, 0, FALSE) < 0) - GOERROR; - pack_options.latest = 1; - pack_options.grp_compact = 10; - pack_options.grp_indexed = 5; - pack_options.msg_size[0] = 10; - pack_options.msg_size[1] = 20; - pack_options.msg_size[2] = 30; - pack_options.msg_size[3] = 40; - pack_options.msg_size[4] = 50; - if (h5repack(FNAME1, FNAME1OUT, &pack_options) < 0) - GOERROR; - if (h5diff(FNAME1, FNAME1OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if (h5repack_verify(FNAME1, FNAME1OUT, &pack_options)<=0) - GOERROR; - if (h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); - + if (!h5_using_parallel_driver(NULL)) { + TESTING(" latest file format options"); + if (h5repack_init(&pack_options, 0, FALSE) < 0) + GOERROR; + pack_options.latest = 1; + pack_options.grp_compact = 10; + pack_options.grp_indexed = 5; + pack_options.msg_size[0] = 10; + pack_options.msg_size[1] = 20; + pack_options.msg_size[2] = 30; + pack_options.msg_size[3] = 40; + pack_options.msg_size[4] = 50; + if (h5repack(FNAME1, FNAME1OUT, &pack_options) < 0) + GOERROR; + if (h5diff(FNAME1, FNAME1OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(FNAME1, FNAME1OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); + } /*------------------------------------------------------------------------- * test several global filters @@ -1566,7 +1546,7 @@ int main (void) TESTING(" several global filters"); -#if defined (H5_HAVE_FILTER_DEFLATE) +#if defined(H5_HAVE_FILTER_DEFLATE) if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; @@ -1588,63 +1568,62 @@ int main (void) SKIPPED(); #endif - - /*------------------------------------------------------------------------- - * test file with userblock - *------------------------------------------------------------------------- - */ - TESTING(" file with added userblock"); + if (h5_using_default_driver(NULL)) { + /*------------------------------------------------------------------------- + * test file with userblock + *------------------------------------------------------------------------- + */ + TESTING(" file with added userblock"); #ifdef H5_HAVE_FILTER_DEFLATE - if(h5repack_init(&pack_options, 0, FALSE) < 0) - GOERROR; - - /* add the options for a user block size and user block filename */ - pack_options.ublock_size = USERBLOCK_SIZE; - pack_options.ublock_filename = FNAME_UB; + if (h5repack_init(&pack_options, 0, FALSE) < 0) + GOERROR; - if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0) - GOERROR; - if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) - GOERROR; - if(verify_userblock(FNAME8OUT) < 0) - GOERROR; - if(h5repack_end(&pack_options) < 0) - GOERROR; + /* add the options for a user block size and user block filename */ + pack_options.ublock_size = USERBLOCK_SIZE; + pack_options.ublock_filename = FNAME_UB; + if (h5repack(FNAME8, FNAME8OUT, &pack_options) < 0) + GOERROR; + if (h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) + GOERROR; + if (verify_userblock(FNAME8OUT) < 0) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; - PASSED(); + PASSED(); #else - SKIPPED(); + SKIPPED(); #endif - + } /*------------------------------------------------------------------------- - * test file with aligment + * test file with alignment *------------------------------------------------------------------------- */ - TESTING(" file with aligment"); + TESTING(" file with alignment"); #ifdef H5_HAVE_FILTER_DEFLATE - if(h5repack_init(&pack_options, 0, FALSE) < 0) + if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; - /* add the options for aligment */ + /* add the options for alignment */ pack_options.alignment = 1; pack_options.threshold = 1; - if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0) + if (h5repack(FNAME8, FNAME8OUT, &pack_options) < 0) GOERROR; - if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0) + if (h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) + if (h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) GOERROR; - /* verify aligment */ + /* verify alignment */ { hsize_t threshold; hsize_t alignment; @@ -1655,7 +1634,7 @@ int main (void) GOERROR; if ((fapl = H5Fget_access_plist(fid)) < 0) GOERROR; - if (H5Pget_alignment(fapl, &threshold, &alignment) < 0) + if (H5Pget_alignment(fapl, &threshold, &alignment) < 0) GOERROR; if (threshold != 1) GOERROR; @@ -1665,14 +1644,11 @@ int main (void) GOERROR; if (H5Fclose(fid) < 0) GOERROR; - } - - if(h5repack_end(&pack_options) < 0) + if (h5repack_end(&pack_options) < 0) GOERROR; - PASSED(); #else SKIPPED(); @@ -1684,75 +1660,74 @@ int main (void) */ TESTING(" file with committed datatypes"); - if(h5repack_init(&pack_options, 0, FALSE) < 0) + if (h5repack_init(&pack_options, 0, FALSE) < 0) GOERROR; - if(h5repack(FNAME17, FNAME17OUT, &pack_options) < 0) + if (h5repack(FNAME17, FNAME17OUT, &pack_options) < 0) GOERROR; - if(h5diff(FNAME17, FNAME17OUT, NULL, NULL, &diff_options) > 0) + if (h5diff(FNAME17, FNAME17OUT, NULL, NULL, &diff_options) > 0) GOERROR; - if(h5repack_verify(FNAME17, FNAME17OUT, &pack_options) <= 0) + if (h5repack_verify(FNAME17, FNAME17OUT, &pack_options) <= 0) GOERROR; - if(h5repack_end(&pack_options) < 0) + if (h5repack_end(&pack_options) < 0) GOERROR; - PASSED(); - /*------------------------------------------------------------------------- - * test --metadata_block_size option - * Also verify that output file using the metadata_block_size option is - * larger than the output file one not using it. - * FNAME4 is used because it is the same as the test file used for the - * shell script version of this test (h5repack.sh). - *------------------------------------------------------------------------- - */ - TESTING(" metadata block size option"); - /* First run without metadata option. No need to verify the correctness */ - /* since this has been verified by earlier tests. Just record the file */ - /* size of the output file. */ - if(h5repack_init(&pack_options, 0, FALSE) < 0) - GOERROR; - if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) - GOERROR; - if(HDstat(FNAME4OUT, &file_stat) < 0) - GOERROR; - fsize1 = file_stat.st_size; - if(h5repack_end(&pack_options) < 0) - GOERROR; - - /* run it again with metadata option */ - if(h5repack_init(&pack_options, 0, FALSE) < 0) - GOERROR; - pack_options.meta_block_size = 8192; - if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) - GOERROR; - if(h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) > 0) - GOERROR; - if(h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) - GOERROR; - /* record the file size of the output file */ - if(HDstat(FNAME4OUT, &file_stat) < 0) - GOERROR; - fsize2 = file_stat.st_size; - /* verify second file size is larger than the first one */ - if(fsize2 <= fsize1) - GOERROR; - if(h5repack_end(&pack_options) < 0) - GOERROR; - PASSED(); + if (h5_using_default_driver(NULL)) { + /*------------------------------------------------------------------------- + * test --metadata_block_size option + * Also verify that output file using the metadata_block_size option is + * larger than the output file one not using it. + * FNAME4 is used because it is the same as the test file used for the + * shell script version of this test (h5repack.sh). + *------------------------------------------------------------------------- + */ + TESTING(" metadata block size option"); + /* First run without metadata option. No need to verify the correctness */ + /* since this has been verified by earlier tests. Just record the file */ + /* size of the output file. */ + if (h5repack_init(&pack_options, 0, FALSE) < 0) + GOERROR; + if (h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) + GOERROR; + if (HDstat(FNAME4OUT, &file_stat) < 0) + GOERROR; + fsize1 = file_stat.st_size; + if (h5repack_end(&pack_options) < 0) + GOERROR; + /* run it again with metadata option */ + if (h5repack_init(&pack_options, 0, FALSE) < 0) + GOERROR; + pack_options.meta_block_size = 8192; + if (h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) + GOERROR; + if (h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) + GOERROR; + /* record the file size of the output file */ + if (HDstat(FNAME4OUT, &file_stat) < 0) + GOERROR; + fsize2 = file_stat.st_size; + /* verify second file size is larger than the first one */ + if (fsize2 <= fsize1) + GOERROR; + if (h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); + } /*------------------------------------------------------------------------- * clean temporary test files *------------------------------------------------------------------------- */ { - hid_t fapl; + hid_t fapl; fapl = h5_fileaccess(); h5_clean_files(H5REPACK_FILENAMES, fapl); - } puts("All h5repack tests passed."); @@ -1762,107 +1737,110 @@ int main (void) return 0; error: + h5tools_close(); + puts("***** H5REPACK TESTS FAILED *****"); - return 1; + return 1; } - /*------------------------------------------------------------------------- -* Function: make_testfiles -* -* Purpose: make a test file with all types of HDF5 objects, -* datatypes and filters -* -*------------------------------------------------------------------------- -*/ -static -int make_testfiles(void) + * Function: make_testfiles + * + * Purpose: make a test file with all types of HDF5 objects, + * datatypes and filters + * + *------------------------------------------------------------------------- + */ +static int +make_testfiles(void) { - hid_t fid = -1; - hid_t fcpl = -1; /* File creation property list */ - hid_t fapl = -1; /* File access property list */ - unsigned j; /* Local index variable */ + hid_t fid = H5I_INVALID_HID; + hid_t fcpl = H5I_INVALID_HID; /* File creation property list */ + hid_t fapl = H5I_INVALID_HID; /* File access property list */ + unsigned j; /* Local index variable */ /*------------------------------------------------------------------------- * create a file for general copy test *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME0, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME0, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_fill(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create another file for general copy test (all datatypes) *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) - return -1; - if (make_all_objects(fid) < 0) - goto out; - if(H5Fclose(fid) < 0) - return -1; + if (!h5_using_parallel_driver(NULL)) { + if ((fid = H5Fcreate(FNAME1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return -1; + if (make_all_objects(fid) < 0) + goto out; + if (H5Fclose(fid) < 0) + return -1; + } /*------------------------------------------------------------------------- * create a file for attributes copy test *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_attributes(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file for hard links test *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_hlinks(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file for layouts test *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME4, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME4, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_layout(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file for layout conversion test *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME18, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME18, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; - if(make_layout2(fid) < 0) + if (make_layout2(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * for test layout conversions form chunk with unlimited max dims *------------------------------------------------------------------------- */ - if((fid = H5Fcreate("h5repack_layout3.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate("h5repack_layout3.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; - if(make_layout3(fid) < 0) + if (make_layout3(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- @@ -1872,168 +1850,171 @@ int make_testfiles(void) if (make_early() < 0) goto out; - /*------------------------------------------------------------------------- - * create a file with the SZIP filter - *------------------------------------------------------------------------- - */ + /*------------------------------------------------------------------------- + * create a file with the SZIP filter + *------------------------------------------------------------------------- + */ #ifdef H5_HAVE_FILTER_SZIP - if((fid = H5Fcreate(FNAME7, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME7, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_szip(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; #endif /* H5_HAVE_FILTER_SZIP */ - /*------------------------------------------------------------------------- * create a file with the deflate filter *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME8, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME8, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_deflate(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with the shuffle filter *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME9, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME9, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_shuffle(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with the fletcher32 filter *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME10, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME10, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_fletcher32(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with all the filters *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME11, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME11, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_all_filters(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with the nbit filter *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME12, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME12, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_nbit(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with the scaleoffset filter *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME13, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME13, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_scaleoffset(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a big dataset *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME14, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME14, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_big(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /*------------------------------------------------------------------------- * create a file with external dataset *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME15, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME15, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_external(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; - /*------------------------------------------------------------------------- - * create a file with userblock - *------------------------------------------------------------------------- - */ - if(make_userblock() < 0) - goto out; + if (h5_using_default_driver(NULL)) { + /*------------------------------------------------------------------------- + * create a file with userblock + *------------------------------------------------------------------------- + */ + if (make_userblock() < 0) + goto out; - /*------------------------------------------------------------------------- - * create a userblock file - *------------------------------------------------------------------------- - */ - if(make_userblock_file() < 0) - goto out; + /*------------------------------------------------------------------------- + * create a userblock file + *------------------------------------------------------------------------- + */ + if (make_userblock_file() < 0) + goto out; + } /*------------------------------------------------------------------------- * create a file with named datatypes *------------------------------------------------------------------------- */ - if((fid = H5Fcreate(FNAME17, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME17, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; if (make_named_dtype(fid) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; - /*------------------------------------------------------------------------- - * create obj and region reference type datasets (bug1814) - * add attribute with int type (bug1726) - * add attribute with obj and region reference type (bug1726) - *------------------------------------------------------------------------- - */ - if((fid = H5Fcreate(FNAME_REF, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) - return -1; - /* create reference type datasets */ - if (make_references(fid) < 0) - goto out; - if(H5Fclose(fid) < 0) - return -1; + if (!h5_using_parallel_driver(NULL)) { + /*------------------------------------------------------------------------- + * create obj and region reference type datasets (bug1814) + * add attribute with int type (bug1726) + * add attribute with obj and region reference type (bug1726) + *------------------------------------------------------------------------- + */ + if ((fid = H5Fcreate(FNAME_REF, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return -1; + /* create reference type datasets */ + if (make_references(fid) < 0) + goto out; + if (H5Fclose(fid) < 0) + return -1; - /*------------------------------------------------------------------------- - * create a file with obj and region references in attribute of compound and - * vlen datatype - *-------------------------------------------------------------------------*/ - if((fid = H5Fcreate(FNAME_ATTR_REF, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) - return -1; - if (make_complex_attr_references(fid) < 0) - goto out; - if(H5Fclose(fid) < 0) - return -1; + /*------------------------------------------------------------------------- + * create a file with obj and region references in attribute of compound and + * vlen datatype + *-------------------------------------------------------------------------*/ + if ((fid = H5Fcreate(FNAME_ATTR_REF, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return -1; + if (make_complex_attr_references(fid) < 0) + goto out; + if (H5Fclose(fid) < 0) + return -1; + } /*------------------------------------------------------------------------- * create 8 files with combinations ??? *------------------------------------------------------------------------- */ /* Create file access property list */ - if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) + if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) return -1; /* Set to use latest library format */ - if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) + if (H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) return -1; /* @@ -2042,9 +2023,9 @@ int make_testfiles(void) * default: inpage=4096 */ j = 0; - if((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[j], H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) + if ((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[j], H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) return -1; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; /* @@ -2053,118 +2034,118 @@ int make_testfiles(void) * default: inpage=4096 */ HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - if((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) - return -1; - if(H5Fclose(fid) < 0) - return -1; - - /* - * #2 -- h5repack_page_persist.h5 - * Setting: - * strategy=PAGE, persist=TRUE, threshold=1 - * inpage=512 - * latest format - */ - /* Create file creation property list */ - if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - return -1; - if(H5Pset_file_space_page_size(fcpl, (hsize_t)512) < 0) - return -1; - if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_PAGE, TRUE, (hsize_t)1) < 0) - return -1; - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - if((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, fapl)) < 0) - return -1; - if(H5Fclose(fid) < 0) + if ((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; - if(H5Pclose(fcpl) < 0) + if (H5Fclose(fid) < 0) return -1; + if (h5_using_default_driver(NULL)) { + /* + * #2 -- h5repack_page_persist.h5 + * Setting: + * strategy=PAGE, persist=TRUE, threshold=1 + * inpage=512 + * latest format + */ + /* Create file creation property list */ + if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + return -1; + if (H5Pset_file_space_page_size(fcpl, (hsize_t)512) < 0) + return -1; + if (H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_PAGE, TRUE, (hsize_t)1) < 0) + return -1; + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + if ((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, fapl)) < 0) + return -1; + if (H5Fclose(fid) < 0) + return -1; + if (H5Pclose(fcpl) < 0) + return -1; - /* - * #3 -- h5repack_fsm_aggr_persist.h5 - * Setting: - * strategy=FSM_AGGR, persist=TRUE, threshold=1 - * default: inpage=4096 - */ - /* Create file creation property list */ - if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - return -1; - if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, TRUE, (hsize_t)1) < 0) - return -1; - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - if((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) - return -1; - if(H5Fclose(fid) < 0) - return -1; - if(H5Pclose(fcpl) < 0) - return -1; - + /* + * #3 -- h5repack_fsm_aggr_persist.h5 + * Setting: + * strategy=FSM_AGGR, persist=TRUE, threshold=1 + * default: inpage=4096 + */ + /* Create file creation property list */ + if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + return -1; + if (H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, TRUE, (hsize_t)1) < 0) + return -1; + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + if ((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) + return -1; + if (H5Fclose(fid) < 0) + return -1; + if (H5Pclose(fcpl) < 0) + return -1; - /* - * #4 -- h5repack_page_threshold.h5 - * Setting: - * strategy=PAGE, persist=FALSE, threshold=3 - * inpage=8192 - * latest format - */ + /* + * #4 -- h5repack_page_threshold.h5 + * Setting: + * strategy=PAGE, persist=FALSE, threshold=3 + * inpage=8192 + * latest format + */ - /* Create file creation property list */ - if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - return -1; - if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_PAGE, FALSE, (hsize_t)3) < 0) - return -1; - if(H5Pset_file_space_page_size(fcpl, (hsize_t)8192) < 0) - return -1; - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - if((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, fapl)) < 0) - return -1; - if(H5Fclose(fid) < 0) - return -1; - if(H5Pclose(fcpl) < 0) - return -1; + /* Create file creation property list */ + if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + return -1; + if (H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_PAGE, FALSE, (hsize_t)3) < 0) + return -1; + if (H5Pset_file_space_page_size(fcpl, (hsize_t)8192) < 0) + return -1; + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + if ((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, fapl)) < 0) + return -1; + if (H5Fclose(fid) < 0) + return -1; + if (H5Pclose(fcpl) < 0) + return -1; - /* - * #5 -- h5repack_fsm_aggr_threshold.h5 - * Setting: - * strategy=FSM_AGGR, persist=FALSE, threshold=3 - * inpage=4096 - */ + /* + * #5 -- h5repack_fsm_aggr_threshold.h5 + * Setting: + * strategy=FSM_AGGR, persist=FALSE, threshold=3 + * inpage=4096 + */ - /* Create file creation property list */ - if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - return -1; - if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, FALSE, (hsize_t)3) < 0) - return -1; - if(H5Pset_file_space_page_size(fcpl, (hsize_t)FS_PAGESIZE_DEF) < 0) - return -1; - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - if((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) - return -1; - if(H5Fclose(fid) < 0) - return -1; - if(H5Pclose(fcpl) < 0) - return -1; + /* Create file creation property list */ + if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + return -1; + if (H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, FALSE, (hsize_t)3) < 0) + return -1; + if (H5Pset_file_space_page_size(fcpl, (hsize_t)FS_PAGESIZE_DEF) < 0) + return -1; + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + if ((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) + return -1; + if (H5Fclose(fid) < 0) + return -1; + if (H5Pclose(fcpl) < 0) + return -1; - /* - * #6 -- h5repack_aggr.h5 - * Setting: - * strategy=AGGR, persist=FALSE, threshold=1 - * latest format - */ + /* + * #6 -- h5repack_aggr.h5 + * Setting: + * strategy=AGGR, persist=FALSE, threshold=1 + * latest format + */ - /* Create file creation property list */ - if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - return -1; - if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_AGGR, FALSE, (hsize_t)1) < 0) - return -1; - HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - if((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, fapl)) < 0) - return -1; - if(H5Fclose(fid) < 0) - return -1; - if(H5Pclose(fcpl) < 0) - return -1; + /* Create file creation property list */ + if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + return -1; + if (H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_AGGR, FALSE, (hsize_t)1) < 0) + return -1; + HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); + if ((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, fapl)) < 0) + return -1; + if (H5Fclose(fid) < 0) + return -1; + if (H5Pclose(fcpl) < 0) + return -1; + } /* * #7 -- h5repack_none.h5 @@ -2174,21 +2155,21 @@ int make_testfiles(void) */ /* Create file creation property list */ - if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) return -1; - if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_NONE, FALSE, (hsize_t)1) < 0) + if (H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_NONE, FALSE, (hsize_t)1) < 0) return -1; - if(H5Pset_file_space_page_size(fcpl, (hsize_t)8192) < 0) + if (H5Pset_file_space_page_size(fcpl, (hsize_t)8192) < 0) return -1; HDassert(j < NELMTS(H5REPACK_FSPACE_FNAMES)); - if((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(H5REPACK_FSPACE_FNAMES[++j], H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) return -1; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) return -1; - if(H5Pclose(fcpl) < 0) + if (H5Pclose(fcpl) < 0) return -1; - if(H5Pclose(fapl) < 0) + if (H5Pclose(fapl) < 0) return -1; return 0; @@ -2198,47 +2179,44 @@ out: return -1; } - - /*------------------------------------------------------------------------- -* Function: make_all_objects -* -* Purpose: make a test file with all types of HDF5 objects -* -*------------------------------------------------------------------------- -*/ -static -int make_all_objects(hid_t loc_id) + * Function: make_all_objects + * + * Purpose: make a test file with all types of HDF5 objects + * + *------------------------------------------------------------------------- + */ +static int +make_all_objects(hid_t loc_id) { - hid_t did = -1; - hid_t gid = -1; - hid_t tid = -1; - hid_t rid = -1; - hid_t sid = -1; - hid_t gcplid = -1; + hid_t did = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + hid_t rid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t gcplid = H5I_INVALID_HID; hsize_t dims[1] = {2}; /* compound datatype */ - typedef struct s_t - { - int a; - float b; + typedef struct s_t { + int a; + float b; } s_t; /*------------------------------------------------------------------------- - * H5G_DATASET - *------------------------------------------------------------------------- - */ + * H5G_DATASET + *------------------------------------------------------------------------- + */ if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; - if ((did = H5Dcreate2(loc_id, "dset_referenced", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(loc_id, "dset_referenced", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, + H5P_DEFAULT)) < 0) goto out; - /*------------------------------------------------------------------------- - * H5G_GROUP - *------------------------------------------------------------------------- - */ - if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + * H5G_GROUP + *------------------------------------------------------------------------- + */ + if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; if (H5Gclose(gid) < 0) goto out; @@ -2254,9 +2232,9 @@ int make_all_objects(hid_t loc_id) goto out; /*------------------------------------------------------------------------- - * H5G_TYPE - *------------------------------------------------------------------------- - */ + * H5G_TYPE + *------------------------------------------------------------------------- + */ /* create a compound datatype */ if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) @@ -2269,27 +2247,27 @@ int make_all_objects(hid_t loc_id) goto out; /*------------------------------------------------------------------------- - * H5G_LINK - *------------------------------------------------------------------------- - */ + * H5G_LINK + *------------------------------------------------------------------------- + */ if (H5Lcreate_soft("dset", loc_id, "link", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; /*------------------------------------------------------------------------- - * H5G_UDLINK - *------------------------------------------------------------------------- - */ + * H5G_UDLINK + *------------------------------------------------------------------------- + */ /* Create an external link. Other UD links are not supported by h5repack */ if (H5Lcreate_external("file", "path", loc_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; /*------------------------------------------------------------------------- - * write a series of datasetes at root - *------------------------------------------------------------------------- - */ + * write a series of datasetes at root + *------------------------------------------------------------------------- + */ - if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0) + if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0) goto out; if (write_dset_in(rid, "dset_referenced", loc_id, 0) < 0) goto out; @@ -2317,58 +2295,58 @@ out: H5Sclose(sid); H5Tclose(tid); H5Pclose(gcplid); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } - /*------------------------------------------------------------------------- -* Function: make_attributes -* -* Purpose: make a test file with all types of attributes -* -*------------------------------------------------------------------------- -*/ -static -int make_attributes(hid_t loc_id) + * Function: make_attributes + * + * Purpose: make a test file with all types of attributes + * + *------------------------------------------------------------------------- + */ +static int +make_attributes(hid_t loc_id) { - hid_t did = -1; - hid_t gid = -1; - hid_t rid = -1; - hid_t sid = -1; + hid_t did = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; + hid_t rid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; hsize_t dims[1] = {2}; /*------------------------------------------------------------------------- - * H5G_DATASET - *------------------------------------------------------------------------- - */ + * H5G_DATASET + *------------------------------------------------------------------------- + */ if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; - if ((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; /*------------------------------------------------------------------------- - * H5G_GROUP - *------------------------------------------------------------------------- - */ - if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + * H5G_GROUP + *------------------------------------------------------------------------- + */ + if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0) + if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0) goto out; /*------------------------------------------------------------------------- - * write a series of attributes on the dataset, group, and root group - *------------------------------------------------------------------------- - */ + * write a series of attributes on the dataset, group, and root group + *------------------------------------------------------------------------- + */ - if ( write_attr_in(did, "dset", loc_id, 0) < 0) + if (write_attr_in(did, "dset", loc_id, 0) < 0) goto out; if (write_attr_in(gid, "dset", loc_id, 0) < 0) goto out; if (write_attr_in(rid, "dset", loc_id, 0) < 0) goto out; - /* close */ + /* close */ if (H5Dclose(did) < 0) goto out; if (H5Gclose(gid) < 0) @@ -2387,59 +2365,58 @@ out: H5Gclose(gid); H5Gclose(rid); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; - } /*------------------------------------------------------------------------- -* Function: make_hlinks -* -* Purpose: make a test file with hard links -* -*------------------------------------------------------------------------- -*/ -static -int make_hlinks(hid_t loc_id) + * Function: make_hlinks + * + * Purpose: make a test file with hard links + * + *------------------------------------------------------------------------- + */ +static int +make_hlinks(hid_t loc_id) { - hid_t g1id =- 1; - hid_t g2id = -1; - hid_t g3id = -1; - hsize_t dims[2] = {3,2}; - int buf[3][2] = {{1,1}, {1,2}, {2,2}}; + hid_t g1id = -1; + hid_t g2id = H5I_INVALID_HID; + hid_t g3id = H5I_INVALID_HID; + hsize_t dims[2] = {3, 2}; + int buf[3][2] = {{1, 1}, {1, 2}, {2, 2}}; /*------------------------------------------------------------------------- - * create a dataset and some hard links to it - *------------------------------------------------------------------------- - */ + * create a dataset and some hard links to it + *------------------------------------------------------------------------- + */ - if(write_dset(loc_id, 2, dims, "dset", H5T_NATIVE_INT, buf) < 0) + if (write_dset(loc_id, 2, dims, "dset", H5T_NATIVE_INT, buf) < 0) return -1; - if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link1 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link1 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) return -1; - if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link2 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link2 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) return -1; - if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link3 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link3 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) return -1; /*------------------------------------------------------------------------- - * create a group and some hard links to it - *------------------------------------------------------------------------- - */ + * create a group and some hard links to it + *------------------------------------------------------------------------- + */ - if((g1id = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((g1id = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if((g2id = H5Gcreate2(g1id, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((g2id = H5Gcreate2(g1id, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if((g3id = H5Gcreate2(g2id, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((g3id = H5Gcreate2(g2id, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Lcreate_hard(loc_id, "g1", g2id, "link1 to g1", H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Lcreate_hard(loc_id, "g1", g2id, "link1 to g1", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; - if(H5Lcreate_hard(g1id, "g2", g3id, "link1 to g2", H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Lcreate_hard(g1id, "g2", g3id, "link1 to g2", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; - /* close */ if (H5Gclose(g1id) < 0) goto out; @@ -2456,635 +2433,708 @@ out: H5Gclose(g1id); H5Gclose(g2id); H5Gclose(g3id); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; - } - /*------------------------------------------------------------------------- -* Function: make_szip -* -* Purpose: make a dataset with the SZIP filter -* -*------------------------------------------------------------------------- -*/ + * Function: make_szip + * + * Purpose: make a dataset with the SZIP filter + * + *------------------------------------------------------------------------- + */ #ifdef H5_HAVE_FILTER_SZIP -static -int make_szip(hid_t loc_id) +static int +make_szip(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ - unsigned szip_options_mask = H5_SZIP_ALLOW_K13_OPTION_MASK | H5_SZIP_NN_OPTION_MASK; + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + unsigned szip_options_mask = H5_SZIP_ALLOW_K13_OPTION_MASK | H5_SZIP_NN_OPTION_MASK; unsigned szip_pixels_per_block = 8; - hsize_t dims[RANK] = {DIM1, DIM2}; - hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - int szip_can_encode = 0; - - for (i = n = 0; i < DIM1; i++) { - for (j = 0; j < DIM2; j++) { - buf[i][j] = n++; - } - } + hsize_t dims[RANK] = {DIM1, DIM2}; + hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; + int szip_can_encode = 0; + + /* Create and fill array */ + struct { + int arr[DIM1][DIM2]; + } *buf = malloc(sizeof(*buf)); + if (NULL == buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(buf, int); + /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) - return -1; + if ((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + goto error; /* create a dcpl */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) - goto out; + if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto error; /*------------------------------------------------------------------------- - * SZIP - *------------------------------------------------------------------------- - */ + * SZIP + *------------------------------------------------------------------------- + */ /* Make sure encoding is enabled */ if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) szip_can_encode = 1; if (szip_can_encode) { /* set szip data */ - if(H5Pset_szip (dcpl, szip_options_mask, szip_pixels_per_block) < 0) - goto out; + if (H5Pset_szip(dcpl, szip_options_mask, szip_pixels_per_block) < 0) + goto error; if (make_dset(loc_id, "dset_szip", sid, dcpl, buf) < 0) - goto out; + goto error; } else /* WARNING? SZIP is decoder only, can't generate test files */ - if(H5Sclose(sid) < 0) - goto out; - if(H5Pclose(dcpl) < 0) - goto out; + if (H5Sclose(sid) < 0) + goto error; + if (H5Pclose(dcpl) < 0) + goto error; + + HDfree(buf); return 0; -out: - H5E_BEGIN_TRY { +error: + H5E_BEGIN_TRY + { H5Pclose(dcpl); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; + + HDfree(buf); + return -1; } #endif /* H5_HAVE_FILTER_SZIP */ - - /*------------------------------------------------------------------------- -* Function: make_deflate -* -* Purpose: make a dataset with the deflate filter -* -*------------------------------------------------------------------------- -*/ -static -int make_deflate(hid_t loc_id) + * Function: make_deflate + * + * Purpose: make a dataset with the deflate filter + * + *------------------------------------------------------------------------- + */ +static int +make_deflate(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ - hsize_t dims[RANK] = {DIM1,DIM2}; - hsize_t chunk_dims[RANK] = {CDIM1,CDIM2}; - int buf[DIM1][DIM2]; + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hsize_t dims[RANK] = {DIM1, DIM2}; + hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; hobj_ref_t bufref[1]; /* reference */ hsize_t dims1r[1] = {1}; - int i, j, n; - for (i = n = 0; i < DIM1; i++) { - for (j = 0; j < DIM2; j++) { - buf[i][j] = n++; - } - } + /* Create and fill array */ + struct { + int arr[DIM1][DIM2]; + } *buf = malloc(sizeof(*buf)); + if (NULL == buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(buf, int); /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) - return -1; + if ((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + goto error; /* create a dcpl */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) - goto out; + if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto error; - /*------------------------------------------------------------------------- - * GZIP - *------------------------------------------------------------------------- - */ -#if defined (H5_HAVE_FILTER_DEFLATE) + /*------------------------------------------------------------------------- + * GZIP + *------------------------------------------------------------------------- + */ +#if defined(H5_HAVE_FILTER_DEFLATE) /* set deflate data */ - if(H5Pset_deflate(dcpl, 9) < 0) - goto out; + if (H5Pset_deflate(dcpl, 9) < 0) + goto error; if (make_dset(loc_id, "dset_deflate", sid, dcpl, buf) < 0) - goto out; + goto error; /* create a reference to the dataset, test second seeep of file for references */ if (H5Rcreate(&bufref[0], loc_id, "dset_deflate", H5R_OBJECT, (hid_t)-1) < 0) - goto out; + goto error; if (write_dset(loc_id, 1, dims1r, "ref", H5T_STD_REF_OBJ, bufref) < 0) - goto out; + goto error; #endif - /*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid) < 0) - goto out; - if(H5Pclose(dcpl) < 0) - goto out; + * close space and dcpl + *------------------------------------------------------------------------- + */ + if (H5Sclose(sid) < 0) + goto error; + if (H5Pclose(dcpl) < 0) + goto error; + + HDfree(buf); return 0; -out: - H5E_BEGIN_TRY { +error: + H5E_BEGIN_TRY + { H5Pclose(dcpl); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; + + HDfree(buf); + return -1; } - /*------------------------------------------------------------------------- -* Function: make_shuffle -* -* Purpose: make a dataset with the shuffle filter -* -*------------------------------------------------------------------------- -*/ -static -int make_shuffle(hid_t loc_id) + * Function: make_shuffle + * + * Purpose: make a dataset with the shuffle filter + * + *------------------------------------------------------------------------- + */ +static int +make_shuffle(hid_t loc_id) { - hid_t dcpl; /* dataset creation property list */ - hid_t sid; /* dataspace ID */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i=n=0; i<DIM1; i++) - { - for (j=0; j<DIM2; j++) - { - buf[i][j]=n++; - } - } + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hsize_t dims[RANK] = {DIM1, DIM2}; + hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; + + /* Create and fill array */ + struct { + int arr[DIM1][DIM2]; + } *buf = malloc(sizeof(*buf)); + if (NULL == buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(buf, int); + /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) - return -1; + if ((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + goto error; /* create a dcpl */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) - goto out; + if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto error; /*------------------------------------------------------------------------- - * shuffle - *------------------------------------------------------------------------- - */ + * shuffle + *------------------------------------------------------------------------- + */ /* set the shuffle filter */ if (H5Pset_shuffle(dcpl) < 0) - goto out; - if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0) - goto out; - + goto error; + if (make_dset(loc_id, "dset_shuffle", sid, dcpl, buf) < 0) + goto error; /*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid) < 0) - goto out; - if(H5Pclose(dcpl) < 0) - goto out; + * close space and dcpl + *------------------------------------------------------------------------- + */ + if (H5Sclose(sid) < 0) + goto error; + if (H5Pclose(dcpl) < 0) + goto error; + + HDfree(buf); return 0; -out: - H5E_BEGIN_TRY { +error: + H5E_BEGIN_TRY + { H5Pclose(dcpl); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; + + HDfree(buf); + return -1; } /*------------------------------------------------------------------------- -* Function: make_fletcher32 -* -* Purpose: make a dataset with the fletcher32 filter -* -*------------------------------------------------------------------------- -*/ -static -int make_fletcher32(hid_t loc_id) + * Function: make_fletcher32 + * + * Purpose: make a dataset with the fletcher32 filter + * + *------------------------------------------------------------------------- + */ +static int +make_fletcher32(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i = n = 0; i < DIM1; i++) { - for (j = 0; j < DIM2; j++) { - buf[i][j] = n++; - } - } + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hsize_t dims[RANK] = {DIM1, DIM2}; + hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; + + /* Create and fill array */ + struct { + int arr[DIM1][DIM2]; + } *buf = malloc(sizeof(*buf)); + if (NULL == buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(buf, int); + /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) - return -1; + if ((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + goto error; /* create a dataset creation property list; the same DCPL is used for all dsets */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) - goto out; - + if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto error; /*------------------------------------------------------------------------- - * fletcher32 - *------------------------------------------------------------------------- - */ + * fletcher32 + *------------------------------------------------------------------------- + */ /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) - goto out; + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto error; /* set the checksum filter */ if (H5Pset_fletcher32(dcpl) < 0) - goto out; - if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0) - goto out; + goto error; + if (make_dset(loc_id, "dset_fletcher32", sid, dcpl, buf) < 0) + goto error; /*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid) < 0) - goto out; - if(H5Pclose(dcpl) < 0) - goto out; + * close space and dcpl + *------------------------------------------------------------------------- + */ + if (H5Sclose(sid) < 0) + goto error; + if (H5Pclose(dcpl) < 0) + goto error; + + HDfree(buf); return 0; -out: - H5E_BEGIN_TRY { +error: + H5E_BEGIN_TRY + { H5Pclose(dcpl); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; + + HDfree(buf); + return -1; } - /*------------------------------------------------------------------------- -* Function: make_nbit -* -* Purpose: make a dataset with the nbit filter -* -*------------------------------------------------------------------------- -*/ -static -int make_nbit(hid_t loc_id) + * Function: make_nbit + * + * Purpose: make a dataset with the nbit filter + * + *------------------------------------------------------------------------- + */ +static int +make_nbit(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ - hid_t dtid = -1; - hid_t dsid = -1; - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i = n = 0; i < DIM1; i++) { - for (j = 0; j < DIM2; j++) { - buf[i][j] = n++; - } - } + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hid_t dtid = H5I_INVALID_HID; + hid_t dsid = H5I_INVALID_HID; + hid_t dxpl = H5P_DEFAULT; + hsize_t dims[RANK] = {DIM1, DIM2}; + hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; + + /* Create and fill array */ + struct { + int arr[DIM1][DIM2]; + } *buf = malloc(sizeof(*buf)); + if (NULL == buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(buf, int); + /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) - return -1; + if ((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + goto error; /* create a dataset creation property list; the same DCPL is used for all dsets */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) - goto out; + if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto error; + +#ifdef H5_HAVE_PARALLEL + /* Set up collective writes for parallel driver */ + if (h5_using_parallel_driver(NULL)) { + if ((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto error; + if (H5Pset_dxpl_mpio(dxpl, H5FD_MPIO_COLLECTIVE) < 0) + goto error; + } +#endif dtid = H5Tcopy(H5T_NATIVE_INT); - if (H5Tset_precision(dtid,(H5Tget_precision(dtid) - 1)) < 0) - goto out; + if (H5Tset_precision(dtid, (H5Tget_precision(dtid) - 1)) < 0) + goto error; /* remove the filters from the dcpl */ - if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) - goto out; - if(H5Pset_nbit(dcpl) < 0) - goto out; - if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) - goto out; - if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - goto out; + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto error; + if (H5Pset_nbit(dcpl) < 0) + goto error; + if ((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto error; + if (H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, dxpl, buf) < 0) + goto error; H5Dclose(dsid); - if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) - goto out; - if((dsid = H5Dcreate2(loc_id, "dset_int31", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) - goto out; - if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - goto out; + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto error; + if ((dsid = H5Dcreate2(loc_id, "dset_int31", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto error; + if (H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, dxpl, buf) < 0) + goto error; H5Dclose(dsid); /*------------------------------------------------------------------------- - * close - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid) < 0) - goto out; - if(H5Pclose(dcpl) < 0) - goto out; + * close + *------------------------------------------------------------------------- + */ + if (dxpl != H5P_DEFAULT && H5Pclose(dxpl) < 0) + goto error; + if (H5Sclose(sid) < 0) + goto error; + if (H5Pclose(dcpl) < 0) + goto error; if (H5Tclose(dtid) < 0) - goto out; + goto error; + + HDfree(buf); return 0; -out: - H5E_BEGIN_TRY { +error: + H5E_BEGIN_TRY + { H5Tclose(dtid); + H5Pclose(dxpl); H5Pclose(dcpl); H5Sclose(sid); H5Dclose(dsid); - } H5E_END_TRY; + } + H5E_END_TRY; + + HDfree(buf); + return -1; } - /*------------------------------------------------------------------------- -* Function: make_scaleoffset -* -* Purpose: make a dataset with the scaleoffset filter -* -*------------------------------------------------------------------------- -*/ -static -int make_scaleoffset(hid_t loc_id) + * Function: make_scaleoffset + * + * Purpose: make a dataset with the scaleoffset filter + * + *------------------------------------------------------------------------- + */ +static int +make_scaleoffset(hid_t loc_id) { - hid_t dcpl = -1; /* dataset creation property list */ - hid_t sid = -1; /* dataspace ID */ - hid_t dtid = -1; - hid_t dsid = -1; - hsize_t dims[RANK] = {DIM1,DIM2}; - hsize_t chunk_dims[RANK] = {CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - - for (i = n = 0; i < DIM1; i++) { - for (j = 0; j < DIM2; j++) { - buf[i][j] = n++; - } - } + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hid_t dtid = H5I_INVALID_HID; + hid_t dsid = H5I_INVALID_HID; + hid_t dxpl = H5P_DEFAULT; + hsize_t dims[RANK] = {DIM1, DIM2}; + hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; + + /* Create and fill array */ + struct { + int arr[DIM1][DIM2]; + } *buf = malloc(sizeof(*buf)); + if (NULL == buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(buf, int); + /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) - return -1; + if ((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + goto error; /* create a dataset creation property list; the same DCPL is used for all dsets */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; /* set up chunk */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) - goto out; + if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto error; + +#ifdef H5_HAVE_PARALLEL + /* Set up collective writes for parallel driver */ + if (h5_using_parallel_driver(NULL)) { + if ((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto error; + if (H5Pset_dxpl_mpio(dxpl, H5FD_MPIO_COLLECTIVE) < 0) + goto error; + } +#endif dtid = H5Tcopy(H5T_NATIVE_INT); /* remove the filters from the dcpl */ - if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) - goto out; - if(H5Pset_scaleoffset(dcpl, H5Z_SO_INT, 31) < 0) - goto out; - if((dsid = H5Dcreate2(loc_id, "dset_scaleoffset", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) - goto out; - if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - goto out; + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto error; + if (H5Pset_scaleoffset(dcpl, H5Z_SO_INT, 31) < 0) + goto error; + if ((dsid = H5Dcreate2(loc_id, "dset_scaleoffset", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto error; + if (H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, dxpl, buf) < 0) + goto error; H5Dclose(dsid); - if((dsid = H5Dcreate2(loc_id, "dset_none", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto out; - if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - goto out; + if ((dsid = H5Dcreate2(loc_id, "dset_none", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto error; + if (H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, dxpl, buf) < 0) + goto error; H5Tclose(dtid); H5Dclose(dsid); /*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid) < 0) - goto out; - if(H5Pclose(dcpl) < 0) - goto out; + * close space, dxpl and dcpl + *------------------------------------------------------------------------- + */ + if (dxpl != H5P_DEFAULT && H5Pclose(dxpl) < 0) + goto error; + if (H5Sclose(sid) < 0) + goto error; + if (H5Pclose(dcpl) < 0) + goto error; + + HDfree(buf); return 0; -out: - H5E_BEGIN_TRY { +error: + H5E_BEGIN_TRY + { + H5Pclose(dxpl); H5Dclose(dsid); H5Tclose(dtid); H5Pclose(dcpl); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; + + HDfree(buf); + return -1; } - /*------------------------------------------------------------------------- -* Function: make_all_filters -* -* Purpose: make a file with all filters -* -*------------------------------------------------------------------------- -*/ -static -int make_all_filters(hid_t loc_id) + * Function: make_all_filters + * + * Purpose: make a file with all filters + * + *------------------------------------------------------------------------- + */ +static int +make_all_filters(hid_t loc_id) { - hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ - hid_t sid = H5I_INVALID_HID; /* dataspace ID */ - hid_t dtid = H5I_INVALID_HID; - hid_t dsid = H5I_INVALID_HID; -#if defined (H5_HAVE_FILTER_SZIP) - unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK; - unsigned szip_pixels_per_block=8; + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hid_t dtid = H5I_INVALID_HID; + hid_t dsid = H5I_INVALID_HID; + hid_t dxpl = H5P_DEFAULT; +#if defined(H5_HAVE_FILTER_SZIP) + unsigned szip_options_mask = H5_SZIP_ALLOW_K13_OPTION_MASK | H5_SZIP_NN_OPTION_MASK; + unsigned szip_pixels_per_block = 8; #endif /* H5_HAVE_FILTER_SZIP */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; -#if defined (H5_HAVE_FILTER_SZIP) + hsize_t dims[RANK] = {DIM1, DIM2}; + hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; +#if defined(H5_HAVE_FILTER_SZIP) int szip_can_encode = 0; #endif - for (i=n=0; i<DIM1; i++) - { - for (j=0; j<DIM2; j++) - { - buf[i][j]=n++; - } - } + /* Create and fill array */ + struct { + int arr[DIM1][DIM2]; + } *buf = malloc(sizeof(*buf)); + if (NULL == buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(buf, int); + /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) - return -1; + if ((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + goto error; /* create a dataset creation property list; the same DCPL is used for all dsets */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; /* set up chunk */ if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) - goto out; + goto error; + +#ifdef H5_HAVE_PARALLEL + /* Set up collective writes for parallel driver */ + if (h5_using_parallel_driver(NULL)) { + if ((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto error; + if (H5Pset_dxpl_mpio(dxpl, H5FD_MPIO_COLLECTIVE) < 0) + goto error; + } +#endif /* set the shuffle filter */ if (H5Pset_shuffle(dcpl) < 0) - goto out; + goto error; /* set the checksum filter */ if (H5Pset_fletcher32(dcpl) < 0) - goto out; + goto error; -#if defined (H5_HAVE_FILTER_SZIP) - if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) - { +#if defined(H5_HAVE_FILTER_SZIP) + if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) { szip_can_encode = 1; } - if (szip_can_encode) - { + if (szip_can_encode) { /* set szip data */ - if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0) - goto out; - } else { + if (H5Pset_szip(dcpl, szip_options_mask, szip_pixels_per_block) < 0) + goto error; + } + else { /* WARNING? SZIP is decoder only, can't generate test data using szip */ } #endif -#if defined (H5_HAVE_FILTER_DEFLATE) +#if defined(H5_HAVE_FILTER_DEFLATE) /* set deflate data */ - if(H5Pset_deflate(dcpl, 9) < 0) - goto out; + if (H5Pset_deflate(dcpl, 9) < 0) + goto error; #endif - if (make_dset(loc_id,"dset_all",sid,dcpl,buf) < 0) - goto out; + if (make_dset(loc_id, "dset_all", sid, dcpl, buf) < 0) + goto error; /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) - goto out; + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto error; /* set the checksum filter */ if (H5Pset_fletcher32(dcpl) < 0) - goto out; - if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0) - goto out; - + goto error; + if (make_dset(loc_id, "dset_fletcher32", sid, dcpl, buf) < 0) + goto error; - /* Make sure encoding is enabled */ -#if defined (H5_HAVE_FILTER_SZIP) - if (szip_can_encode) - { + /* Make sure encoding is enabled */ +#if defined(H5_HAVE_FILTER_SZIP) + if (szip_can_encode) { /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) - goto out; + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto error; /* set szip data */ - if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0) - goto out; - if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0) - goto out; - } else - { + if (H5Pset_szip(dcpl, szip_options_mask, szip_pixels_per_block) < 0) + goto error; + if (make_dset(loc_id, "dset_szip", sid, dcpl, buf) < 0) + goto error; + } + else { /* WARNING? SZIP is decoder only, can't generate test dataset */ } #endif - /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) - goto out; + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto error; /* set the shuffle filter */ if (H5Pset_shuffle(dcpl) < 0) - goto out; - if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0) - goto out; + goto error; + if (make_dset(loc_id, "dset_shuffle", sid, dcpl, buf) < 0) + goto error; - -#if defined (H5_HAVE_FILTER_DEFLATE) +#if defined(H5_HAVE_FILTER_DEFLATE) /* remove the filters from the dcpl */ - if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) - goto out; + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto error; /* set deflate data */ - if(H5Pset_deflate(dcpl, 1) < 0) - goto out; - if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0) - goto out; + if (H5Pset_deflate(dcpl, 1) < 0) + goto error; + if (make_dset(loc_id, "dset_deflate", sid, dcpl, buf) < 0) + goto error; #endif - - /* remove the filters from the dcpl */ if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) - goto out; + goto error; /* set the shuffle filter */ if (H5Pset_nbit(dcpl) < 0) - goto out; + goto error; if ((dtid = H5Tcopy(H5T_NATIVE_INT)) < 0) - goto out; + goto error; if (H5Tset_precision(dtid, (H5Tget_precision(dtid) - 1)) < 0) - goto out; - if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) - goto out; - if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - goto out; + goto error; + if ((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto error; + if (H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, dxpl, buf) < 0) + goto error; /* close */ - if(H5Tclose(dtid) < 0) - goto out; - if(H5Dclose(dsid) < 0) - goto out; + if (H5Tclose(dtid) < 0) + goto error; + if (H5Dclose(dsid) < 0) + goto error; - if(H5Sclose(sid) < 0) - goto out; - if(H5Pclose(dcpl) < 0) - goto out; + if (H5Sclose(sid) < 0) + goto error; + if (dxpl != H5P_DEFAULT && H5Pclose(dxpl) < 0) + goto error; + if (H5Pclose(dcpl) < 0) + goto error; + + HDfree(buf); return 0; -out: +error: H5E_BEGIN_TRY { H5Tclose(dtid); H5Dclose(dsid); + H5Pclose(dxpl); H5Pclose(dcpl); H5Sclose(sid); - } H5E_END_TRY; - return -1; -} + } + H5E_END_TRY; + HDfree(buf); + return -1; +} /*------------------------------------------------------------------------- -* Function: make_early -* -* Purpose: create a file for the H5D_ALLOC_TIME_EARLY test -* -*------------------------------------------------------------------------- -*/ -static -int make_early(void) + * Function: make_early + * + * Purpose: create a file for the H5D_ALLOC_TIME_EARLY test + * + *------------------------------------------------------------------------- + */ +static int +make_early(void) { - hsize_t dims[1] ={3000}; - hsize_t cdims[1]={30}; - hid_t fid=-1; - hid_t did=-1; - hid_t sid=-1; - hid_t tid=-1; - hid_t dcpl=-1; + hsize_t dims[1] = {3000}; + hsize_t cdims[1] = {30}; + hid_t fid = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + hid_t dcpl = H5I_INVALID_HID; int i; char name[16]; - int iter=100; + int iter = 100; if ((fid = H5Fcreate(FNAME5, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; @@ -3100,8 +3150,7 @@ int make_early(void) if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0) goto out; - for(i = 0; i < iter; i++) - { + for (i = 0; i < iter; i++) { if ((fid = H5Fopen(FNAME5, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) goto out; if ((did = H5Dcreate2(fid, "early", H5T_NATIVE_DOUBLE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) @@ -3122,15 +3171,14 @@ int make_early(void) } /*------------------------------------------------------------------------- - * do the same without close/opening the file and creating the dataset - *------------------------------------------------------------------------- - */ + * do the same without close/opening the file and creating the dataset + *------------------------------------------------------------------------- + */ if ((fid = H5Fcreate(FNAME6, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) return -1; - for(i = 0; i < iter; i++) - { + for (i = 0; i < iter; i++) { if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0) goto out; HDsprintf(name, "%d", i); @@ -3157,113 +3205,107 @@ out: H5Sclose(sid); H5Dclose(did); H5Fclose(fid); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } - /*------------------------------------------------------------------------- -* Function: make_layout -* -* Purpose: make several datasets with several layouts in location LOC_ID -* -*------------------------------------------------------------------------- -*/ -static -int make_layout(hid_t loc_id) + * Function: make_layout + * + * Purpose: make several datasets with several layouts in location LOC_ID + * + *------------------------------------------------------------------------- + */ +static int +make_layout(hid_t loc_id) { - hid_t dcpl=-1; /* dataset creation property list */ - hid_t sid=-1; /* dataspace ID */ - hsize_t dims[RANK]={DIM1,DIM2}; - hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; - int buf[DIM1][DIM2]; - int i, j, n; - char name[16]; - + hid_t dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid = H5I_INVALID_HID; /* dataspace ID */ + hsize_t dims[RANK] = {DIM1, DIM2}; + hsize_t chunk_dims[RANK] = {CDIM1, CDIM2}; + int i; + char name[16]; - for (i=n=0; i<DIM1; i++) - { - for (j=0; j<DIM2; j++) - { - buf[i][j]=n++; - } - } + /* Create and fill array */ + struct { + int arr[DIM1][DIM2]; + } *buf = malloc(sizeof(*buf)); + if (NULL == buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(buf, int); /*------------------------------------------------------------------------- - * make several dataset with no filters - *------------------------------------------------------------------------- - */ - for (i=0; i<4; i++) - { - HDsprintf(name,"dset%d",i+1); - if (write_dset(loc_id,RANK,dims,name,H5T_NATIVE_INT,buf) < 0) - return -1; + * make several dataset with no filters + *------------------------------------------------------------------------- + */ + for (i = 0; i < 4; i++) { + HDsprintf(name, "dset%d", i + 1); + if (write_dset(loc_id, RANK, dims, name, H5T_NATIVE_INT, buf) < 0) + goto error; } - /*------------------------------------------------------------------------- - * make several dataset with several layout options - *------------------------------------------------------------------------- - */ + * make several dataset with several layout options + *------------------------------------------------------------------------- + */ /* create a space */ - if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) - return -1; + if ((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + goto error; /* create a dataset creation property list; the same DCPL is used for all dsets */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - { - goto out; - } + goto error; /*------------------------------------------------------------------------- - * H5D_COMPACT - *------------------------------------------------------------------------- - */ - if(H5Pset_layout (dcpl,H5D_COMPACT) < 0) - goto out; - if (make_dset(loc_id,"dset_compact",sid,dcpl,buf) < 0) - { - goto out; - } + * H5D_COMPACT + *------------------------------------------------------------------------- + */ + if (H5Pset_layout(dcpl, H5D_COMPACT) < 0) + goto error; + if (make_dset(loc_id, "dset_compact", sid, dcpl, buf) < 0) + goto error; /*------------------------------------------------------------------------- - * H5D_CONTIGUOUS - *------------------------------------------------------------------------- - */ - if(H5Pset_layout (dcpl,H5D_CONTIGUOUS) < 0) - goto out; - if (make_dset(loc_id,"dset_contiguous",sid,dcpl,buf) < 0) - { - goto out; - } + * H5D_CONTIGUOUS + *------------------------------------------------------------------------- + */ + if (H5Pset_layout(dcpl, H5D_CONTIGUOUS) < 0) + goto error; + if (make_dset(loc_id, "dset_contiguous", sid, dcpl, buf) < 0) + goto error; /*------------------------------------------------------------------------- - * H5D_CHUNKED - *------------------------------------------------------------------------- - */ - if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) - goto out; - if (make_dset(loc_id,"dset_chunk",sid,dcpl,buf) < 0) - { - goto out; - } + * H5D_CHUNKED + *------------------------------------------------------------------------- + */ + if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto error; + if (make_dset(loc_id, "dset_chunk", sid, dcpl, buf) < 0) + goto error; /*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid) < 0) - goto out; - if(H5Pclose(dcpl) < 0) - goto out; + * close space and dcpl + *------------------------------------------------------------------------- + */ + if (H5Sclose(sid) < 0) + goto error; + if (H5Pclose(dcpl) < 0) + goto error; + + HDfree(buf); return 0; -out: +error: H5E_BEGIN_TRY { H5Pclose(dcpl); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; + + HDfree(buf); + return -1; } @@ -3277,202 +3319,197 @@ out: * *------------------------------------------------------------------------- */ -#define S_DIM1 4 -#define S_DIM2 10 -#define CONTIG_S "contig_small" -#define CHUNKED_S_FIX "chunked_small_fixed" +#define S_DIM1 4 +#define S_DIM2 10 +#define CONTIG_S "contig_small" +#define CHUNKED_S_FIX "chunked_small_fixed" -static -int make_layout2(hid_t loc_id) +static int +make_layout2(hid_t loc_id) { - hid_t contig_dcpl = -1; /* dataset creation property list */ - hid_t chunked_dcpl = -1; /* dataset creation property list */ + hid_t contig_dcpl = H5I_INVALID_HID; /* dataset creation property list */ + hid_t chunked_dcpl = H5I_INVALID_HID; /* dataset creation property list */ - int i, j, n; /* Local index variables */ - int ret_value = -1; /* Return value */ - hid_t s_sid = -1; /* dataspace ID */ + int ret_value = -1; /* Return value */ + hid_t s_sid = H5I_INVALID_HID; /* dataspace ID */ - hsize_t s_dims[RANK] = {S_DIM1,S_DIM2}; /* Dataspace (< 1 k) */ - hsize_t chunk_dims[RANK] = {S_DIM1/2, S_DIM2/2}; /* Dimension sizes for chunks */ + hsize_t s_dims[RANK] = {S_DIM1, S_DIM2}; /* Dataspace (< 1 k) */ + hsize_t chunk_dims[RANK] = {S_DIM1 / 2, S_DIM2 / 2}; /* Dimension sizes for chunks */ - int s_buf[S_DIM1][S_DIM2]; /* Temporary buffer */ - - for(i = n = 0; i < S_DIM1; i++) { - for (j = 0; j < S_DIM2; j++) { - s_buf[i][j] = n++; - } - } + /* Create and fill array */ + struct { + int arr[S_DIM1][S_DIM2]; + } *s_buf = malloc(sizeof(*s_buf)); + if (NULL == s_buf) + goto error; + H5TEST_FILL_2D_HEAP_ARRAY(s_buf, int); /* Create dataspaces */ - if((s_sid = H5Screate_simple(RANK, s_dims, NULL)) < 0) - goto out; + if ((s_sid = H5Screate_simple(RANK, s_dims, NULL)) < 0) + goto error; /* Create contiguous datasets */ - if((contig_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; - if(H5Pset_layout(contig_dcpl, H5D_CONTIGUOUS) < 0) - goto out; - if(make_dset(loc_id, CONTIG_S, s_sid, contig_dcpl, s_buf) < 0) - goto out; + if ((contig_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto error; + if (H5Pset_layout(contig_dcpl, H5D_CONTIGUOUS) < 0) + goto error; + if (make_dset(loc_id, CONTIG_S, s_sid, contig_dcpl, s_buf) < 0) + goto error; /* Create chunked datasets */ - if((chunked_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; - if(H5Pset_chunk(chunked_dcpl, RANK, chunk_dims) < 0) - goto out; - if(make_dset(loc_id, CHUNKED_S_FIX, s_sid, chunked_dcpl, s_buf) < 0) - goto out; + if ((chunked_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto error; + if (H5Pset_chunk(chunked_dcpl, RANK, chunk_dims) < 0) + goto error; + if (make_dset(loc_id, CHUNKED_S_FIX, s_sid, chunked_dcpl, s_buf) < 0) + goto error; ret_value = 0; -out: - H5E_BEGIN_TRY { +error: + H5E_BEGIN_TRY + { H5Pclose(contig_dcpl); H5Pclose(chunked_dcpl); H5Sclose(s_sid); + } + H5E_END_TRY; - } H5E_END_TRY; + HDfree(s_buf); - return(ret_value); + return (ret_value); } /* make_layout2() */ /*------------------------------------------------------------------------- -* Function: make_layout3 -* -* Purpose: make chunked datasets with unlimited max dim and chunk dim is -* bigger than current dim. (HDFFV-7933) -* Test for converting chunk to chunk , chunk to conti and chunk -* to compact. -* - The chunk to chunk changes layout bigger than any current dim -* again. -* - The chunk to compact test dataset bigger than 64K, should -* remain original layout.* -* -*------------------------------------------------------------------------- -*/ + * Function: make_layout3 + * + * Purpose: make chunked datasets with unlimited max dim and chunk dim is + * bigger than current dim. (HDFFV-7933) + * Test for converting chunk to chunk , chunk to conti and chunk + * to compact. + * - The chunk to chunk changes layout bigger than any current dim + * again. + * - The chunk to compact test dataset bigger than 64K, should + * remain original layout.* + * + *------------------------------------------------------------------------- + */ #define DIM1_L3 300 #define DIM2_L3 200 /* small size */ #define SDIM1_L3 4 #define SDIM2_L3 50 -static -int make_layout3(hid_t loc_id) +static int +make_layout3(hid_t loc_id) { - hid_t dcpl1=-1; /* dataset creation property list */ - hid_t dcpl2=-1; /* dataset creation property list */ - hid_t dcpl3=-1; /* dataset creation property list */ - hid_t sid1=-1; /* dataspace ID */ - hid_t sid2=-1; /* dataspace ID */ - hsize_t dims1[RANK]={DIM1_L3,DIM2_L3}; - hsize_t dims2[RANK]={SDIM1_L3,SDIM2_L3}; - hsize_t maxdims[RANK]={H5S_UNLIMITED, H5S_UNLIMITED}; - hsize_t chunk_dims1[RANK]={DIM1_L3*2,5}; - hsize_t chunk_dims2[RANK]={SDIM1_L3 + 2, SDIM2_L3/2}; - hsize_t chunk_dims3[RANK]={SDIM1_L3 - 2, SDIM2_L3/2}; - int buf1[DIM1_L3][DIM2_L3]; - int buf2[SDIM1_L3][SDIM2_L3]; - int i, j, n; - - /* init buf1 */ - for (i=n=0; i<DIM1_L3; i++) - { - for (j=0; j<DIM2_L3; j++) - { - buf1[i][j]=n++; - } - } - - /* init buf2 */ - for (i=n=0; i<SDIM1_L3; i++) - { - for (j=0; j<SDIM2_L3; j++) - { - buf2[i][j]=n++; - } - } - - /*------------------------------------------------------------------------- - * make chunked dataset with - * - dset maxdims are UNLIMIT - * - a chunk dim is bigger than dset dim - * - dset size bigger than compact max (64K) - *------------------------------------------------------------------------- - */ + hid_t dcpl1 = H5I_INVALID_HID; /* dataset creation property list */ + hid_t dcpl2 = H5I_INVALID_HID; /* dataset creation property list */ + hid_t dcpl3 = H5I_INVALID_HID; /* dataset creation property list */ + hid_t sid1 = H5I_INVALID_HID; /* dataspace ID */ + hid_t sid2 = H5I_INVALID_HID; /* dataspace ID */ + hsize_t dims1[RANK] = {DIM1_L3, DIM2_L3}; + hsize_t dims2[RANK] = {SDIM1_L3, SDIM2_L3}; + hsize_t maxdims[RANK] = {H5S_UNLIMITED, H5S_UNLIMITED}; + hsize_t chunk_dims1[RANK] = {DIM1_L3 * 2, 5}; + hsize_t chunk_dims2[RANK] = {SDIM1_L3 + 2, SDIM2_L3 / 2}; + hsize_t chunk_dims3[RANK] = {SDIM1_L3 - 2, SDIM2_L3 / 2}; + + /* Create arrays */ + struct { + int arr[DIM1_L3][DIM2_L3]; + } *buf1 = malloc(sizeof(*buf1)); + struct { + int arr[SDIM1_L3][SDIM2_L3]; + } *buf2 = malloc(sizeof(*buf2)); + + if (NULL == buf1 || NULL == buf2) + goto error; + + /* Fill arrays */ + H5TEST_FILL_2D_HEAP_ARRAY(buf1, int); + H5TEST_FILL_2D_HEAP_ARRAY(buf2, int); + + /*------------------------------------------------------------------------- + * make chunked dataset with + * - dset maxdims are UNLIMIT + * - a chunk dim is bigger than dset dim + * - dset size bigger than compact max (64K) + *------------------------------------------------------------------------- + */ /* create a space */ - if((sid1 = H5Screate_simple(RANK, dims1, maxdims)) < 0) - return -1; + if ((sid1 = H5Screate_simple(RANK, dims1, maxdims)) < 0) + goto error; /* create a dataset creation property list; the same DCPL is used for all dsets */ if ((dcpl1 = H5Pcreate(H5P_DATASET_CREATE)) < 0) - { - goto out; - } + goto error; - if(H5Pset_chunk(dcpl1, RANK, chunk_dims1) < 0) - goto out; - if (make_dset(loc_id,"chunk_unlimit1",sid1,dcpl1,buf1) < 0) - { - goto out; - } + if (H5Pset_chunk(dcpl1, RANK, chunk_dims1) < 0) + goto error; + if (make_dset(loc_id, "chunk_unlimit1", sid1, dcpl1, buf1) < 0) + goto error; /*------------------------------------------------------------------------- - * make chunked dataset with - * - dset maxdims are UNLIMIT - * - a chunk dim is bigger than dset dim - * - dset size smaller than compact (64K) - *------------------------------------------------------------------------- - */ + * make chunked dataset with + * - dset maxdims are UNLIMIT + * - a chunk dim is bigger than dset dim + * - dset size smaller than compact (64K) + *------------------------------------------------------------------------- + */ /* create a space */ - if((sid2 = H5Screate_simple(RANK, dims2, maxdims)) < 0) - return -1; + if ((sid2 = H5Screate_simple(RANK, dims2, maxdims)) < 0) + goto error; /* create a dataset creation property list; the same DCPL is used for all dsets */ if ((dcpl2 = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; - if(H5Pset_chunk(dcpl2, RANK, chunk_dims2) < 0) - goto out; + if (H5Pset_chunk(dcpl2, RANK, chunk_dims2) < 0) + goto error; - if (make_dset(loc_id,"chunk_unlimit2",sid2,dcpl2,buf2) < 0) - goto out; + if (make_dset(loc_id, "chunk_unlimit2", sid2, dcpl2, buf2) < 0) + goto error; /*------------------------------------------------------------------------- - * make chunked dataset with - * - dset maxdims are UNLIMIT - * - a chunk dims are smaller than dset dims - * - dset size smaller than compact (64K) - *------------------------------------------------------------------------- - */ + * make chunked dataset with + * - dset maxdims are UNLIMIT + * - a chunk dims are smaller than dset dims + * - dset size smaller than compact (64K) + *------------------------------------------------------------------------- + */ /* create a dataset creation property list; the same DCPL is used for all dsets */ if ((dcpl3 = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto out; + goto error; - if(H5Pset_chunk(dcpl3, RANK, chunk_dims3) < 0) - goto out; + if (H5Pset_chunk(dcpl3, RANK, chunk_dims3) < 0) + goto error; - if (make_dset(loc_id,"chunk_unlimit3",sid2,dcpl3,buf2) < 0) - goto out; + if (make_dset(loc_id, "chunk_unlimit3", sid2, dcpl3, buf2) < 0) + goto error; /*------------------------------------------------------------------------- - * close space and dcpl - *------------------------------------------------------------------------- - */ - if(H5Sclose(sid1) < 0) - goto out; - if(H5Sclose(sid2) < 0) - goto out; - if(H5Pclose(dcpl1) < 0) - goto out; - if(H5Pclose(dcpl2) < 0) - goto out; - if(H5Pclose(dcpl3) < 0) - goto out; + * close space and dcpl + *------------------------------------------------------------------------- + */ + if (H5Sclose(sid1) < 0) + goto error; + if (H5Sclose(sid2) < 0) + goto error; + if (H5Pclose(dcpl1) < 0) + goto error; + if (H5Pclose(dcpl2) < 0) + goto error; + if (H5Pclose(dcpl3) < 0) + goto error; + + HDfree(buf1); + HDfree(buf2); return 0; -out: +error: H5E_BEGIN_TRY { H5Sclose(sid1); @@ -3480,183 +3517,189 @@ out: H5Pclose(dcpl1); H5Pclose(dcpl2); H5Pclose(dcpl3); - } H5E_END_TRY; + } + H5E_END_TRY; + + HDfree(buf1); + HDfree(buf2); + return -1; } /*------------------------------------------------------------------------- -* Function: make a file with an integer dataset with a fill value -* -* Purpose: test copy of fill values -* -*------------------------------------------------------------------------- -*/ -static -int make_fill(hid_t loc_id) + * Function: make a file with an integer dataset with a fill value + * + * Purpose: test copy of fill values + * + *------------------------------------------------------------------------- + */ +static int +make_fill(hid_t loc_id) { - hid_t did=-1; - hid_t sid=-1; + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; hid_t dcpl; - hsize_t dims[2]={3,2}; - int buf[3][2]= {{1,1},{1,2},{2,2}}; + hsize_t dims[2] = {3, 2}; + int buf[3][2] = {{1, 1}, {1, 2}, {2, 2}}; int fillvalue = 2; /*------------------------------------------------------------------------- - * H5T_INTEGER, write a fill value - *------------------------------------------------------------------------- - */ - if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + * H5T_INTEGER, write a fill value + *------------------------------------------------------------------------- + */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto out; - if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue) < 0) + if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue) < 0) goto out; - if((sid = H5Screate_simple(2,dims,NULL)) < 0) + if ((sid = H5Screate_simple(2, dims, NULL)) < 0) goto out; - if((did = H5Dcreate2(loc_id, "dset_fill", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(loc_id, "dset_fill", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) goto out; - if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) goto out; /* close */ - if(H5Sclose(sid) < 0) + if (H5Sclose(sid) < 0) goto out; - if(H5Pclose(dcpl) < 0) + if (H5Pclose(dcpl) < 0) goto out; - if(H5Dclose(did) < 0) + if (H5Dclose(did) < 0) goto out; return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Pclose(dcpl); H5Sclose(sid); H5Dclose(did); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; - } /*------------------------------------------------------------------------- -* Function: make_big -* -* Purpose: used in test read by hyperslabs. Creates a 128MB dataset. -* Only 1 1024Kb hyperslab is written. -* -*------------------------------------------------------------------------- -*/ -static -int make_big(hid_t loc_id) + * Function: make_big + * + * Purpose: used in test read by hyperslabs. Creates a 128MB dataset. + * Only 1 1024Kb hyperslab is written. + * + *------------------------------------------------------------------------- + */ +static int +make_big(hid_t loc_id) { - hid_t did=-1; - hid_t f_sid=-1; - hid_t m_sid=-1; - hid_t tid; - hid_t dcpl; - hsize_t dims[1]={ H5TOOLS_MALLOCSIZE + 1}; /* dataset dimensions */ - hsize_t hs_size[1]; /* hyperslab dimensions */ - hsize_t hs_start[1]; /* hyperslab start */ - hsize_t chunk_dims[1]={1024}; /* chunk dimensions */ - size_t size; - size_t nelmts=(size_t)1024; - signed char fillvalue=-1; - signed char *buf=NULL; + hid_t did = H5I_INVALID_HID; + hid_t f_sid = H5I_INVALID_HID; + hid_t m_sid = H5I_INVALID_HID; + hid_t tid; + hid_t dcpl; + hsize_t dims[1] = {H5TOOLS_MALLOCSIZE + 1}; /* dataset dimensions */ + hsize_t hs_size[1]; /* hyperslab dimensions */ + hsize_t hs_start[1]; /* hyperslab start */ + hsize_t chunk_dims[1] = {1024}; /* chunk dimensions */ + size_t size; + size_t nelmts = (size_t)1024; + signed char fillvalue = -1; + signed char *buf = NULL; /* write one 1024 byte hyperslab */ hs_start[0] = 0; hs_size[0] = 1024; /* create */ - if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto out; - if(H5Pset_fill_value(dcpl, H5T_NATIVE_SCHAR, &fillvalue) < 0) + if (H5Pset_fill_value(dcpl, H5T_NATIVE_SCHAR, &fillvalue) < 0) goto out; - if(H5Pset_chunk(dcpl, 1, chunk_dims) < 0) + if (H5Pset_chunk(dcpl, 1, chunk_dims) < 0) goto out; - if((f_sid = H5Screate_simple(1,dims,NULL)) < 0) + if ((f_sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; - if((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_SCHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_SCHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) goto out; - if((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0) + if ((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0) goto out; - if((tid = H5Dget_type(did)) < 0) + if ((tid = H5Dget_type(did)) < 0) goto out; - if((size = H5Tget_size(tid))<=0) + if ((size = H5Tget_size(tid)) <= 0) goto out; /* initialize buffer to 0 */ - buf=(signed char *) HDcalloc( nelmts, size); + buf = (signed char *)HDcalloc(nelmts, size); - if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0) + if (H5Sselect_hyperslab(f_sid, H5S_SELECT_SET, hs_start, NULL, hs_size, NULL) < 0) goto out; - if (H5Dwrite (did,H5T_NATIVE_SCHAR,m_sid,f_sid,H5P_DEFAULT,buf) < 0) + if (H5Dwrite(did, H5T_NATIVE_SCHAR, m_sid, f_sid, H5P_DEFAULT, buf) < 0) goto out; HDfree(buf); - buf=NULL; + buf = NULL; /* close */ - if(H5Sclose(f_sid) < 0) + if (H5Sclose(f_sid) < 0) goto out; - if(H5Sclose(m_sid) < 0) + if (H5Sclose(m_sid) < 0) goto out; - if(H5Pclose(dcpl) < 0) + if (H5Pclose(dcpl) < 0) goto out; - if(H5Dclose(did) < 0) + if (H5Dclose(did) < 0) goto out; return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Pclose(dcpl); H5Sclose(f_sid); H5Sclose(m_sid); H5Dclose(did); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; - } - /*------------------------------------------------------------------------- -* Function: make_external -* -* Purpose: create a external dataset -* -*------------------------------------------------------------------------- -*/ -static -int make_external(hid_t loc_id) + * Function: make_external + * + * Purpose: create a external dataset + * + *------------------------------------------------------------------------- + */ +static int +make_external(hid_t loc_id) { - hid_t did=-1; - hid_t sid=-1; + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; hid_t dcpl; - int buf[2]={1,2}; - hsize_t cur_size[1]; /* data space current size */ - hsize_t max_size[1]; /* data space maximum size */ + int buf[2] = {1, 2}; + hsize_t cur_size[1]; /* data space current size */ + hsize_t max_size[1]; /* data space maximum size */ hsize_t size; cur_size[0] = max_size[0] = 2; - size = max_size[0] * sizeof(int); + size = max_size[0] * sizeof(int); /* create */ - if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto out; - if(H5Pset_external(dcpl, H5REPACK_EXTFILE, (off_t)0, size) < 0) + if (H5Pset_external(dcpl, H5REPACK_EXTFILE, (off_t)0, size) < 0) goto out; - if((sid = H5Screate_simple(1,cur_size, max_size)) < 0) + if ((sid = H5Screate_simple(1, cur_size, max_size)) < 0) goto out; - if((did = H5Dcreate2(loc_id, "external", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(loc_id, "external", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) goto out; - if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) goto out; /* close */ - if(H5Sclose(sid) < 0) + if (H5Sclose(sid) < 0) goto out; - if(H5Pclose(dcpl) < 0) + if (H5Pclose(dcpl) < 0) goto out; - if(H5Dclose(did) < 0) + if (H5Dclose(did) < 0) goto out; return 0; @@ -3667,51 +3710,50 @@ out: H5Pclose(dcpl); H5Sclose(sid); H5Dclose(did); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; - } /*------------------------------------------------------------------------- -* Function: make_userblock -* -* Purpose: create a file for the userblock copying test -* -*------------------------------------------------------------------------- -*/ + * Function: make_userblock + * + * Purpose: create a file for the userblock copying test + * + *------------------------------------------------------------------------- + */ static int make_userblock(void) { - hid_t fid = -1; - hid_t fcpl = -1; - int fd = -1; /* File descriptor for writing userblock */ - char ub[USERBLOCK_SIZE]; /* User block data */ - ssize_t nwritten; /* # of bytes written */ - size_t u; /* Local index variable */ + hid_t fid = H5I_INVALID_HID; + hid_t fcpl = H5I_INVALID_HID; + int fd = -1; /* File descriptor for writing userblock */ + char ub[USERBLOCK_SIZE]; /* User block data */ + ssize_t H5_ATTR_NDEBUG_UNUSED nwritten; /* # of bytes written */ + size_t u; /* Local index variable */ /* Create file creation property list with userblock set */ - if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + if ((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) goto out; - if(H5Pset_userblock(fcpl, (hsize_t)USERBLOCK_SIZE) < 0) + if (H5Pset_userblock(fcpl, (hsize_t)USERBLOCK_SIZE) < 0) goto out; /* Create file with userblock */ - if((fid = H5Fcreate(FNAME16, H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) + if ((fid = H5Fcreate(FNAME16, H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) goto out; /* Close file creation property list */ - if(H5Pclose(fcpl) < 0) + if (H5Pclose(fcpl) < 0) goto out; - /* Initialize userblock data */ - for(u = 0; u < USERBLOCK_SIZE; u++) + for (u = 0; u < USERBLOCK_SIZE; u++) ub[u] = (char)('a' + (char)(u % 26)); /* Re-open HDF5 file, as "plain" file */ - if((fd = HDopen(FNAME16, O_WRONLY)) < 0) + if ((fd = HDopen(FNAME16, O_WRONLY)) < 0) goto out; /* Write userblock data */ @@ -3724,58 +3766,59 @@ make_userblock(void) return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Pclose(fcpl); H5Fclose(fid); - } H5E_END_TRY; - if(fd >= 0) + } + H5E_END_TRY; + if (fd >= 0) HDclose(fd); return -1; } /* end make_userblock() */ /*------------------------------------------------------------------------- -* Function: verify_userblock -* -* Purpose: Verify that the userblock was copied correctly -* -*------------------------------------------------------------------------- -*/ + * Function: verify_userblock + * + * Purpose: Verify that the userblock was copied correctly + * + *------------------------------------------------------------------------- + */ static int -verify_userblock( const char* filename) +verify_userblock(const char *filename) { - hid_t fid = -1; - hid_t fcpl = -1; - int fd = -1; /* File descriptor for writing userblock */ - char ub[USERBLOCK_SIZE]; /* User block data */ - hsize_t ub_size = 0; /* User block size */ - ssize_t nread; /* # of bytes read */ - size_t u; /* Local index variable */ + hid_t fid = H5I_INVALID_HID; + hid_t fcpl = H5I_INVALID_HID; + int fd = -1; /* File descriptor for writing userblock */ + char ub[USERBLOCK_SIZE]; /* User block data */ + hsize_t ub_size = 0; /* User block size */ + ssize_t H5_ATTR_NDEBUG_UNUSED nread; /* # of bytes read */ + size_t u; /* Local index variable */ /* Open file with userblock */ - if((fid = H5Fopen(filename, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) + if ((fid = H5Fopen(filename, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) goto out; /* Retrieve file creation property list & userblock size */ - if((fcpl = H5Fget_create_plist(fid)) < 0) + if ((fcpl = H5Fget_create_plist(fid)) < 0) goto out; - if(H5Pget_userblock(fcpl, &ub_size) < 0) + if (H5Pget_userblock(fcpl, &ub_size) < 0) goto out; /* Verify userblock size is correct */ - if(ub_size != USERBLOCK_SIZE) + if (ub_size != USERBLOCK_SIZE) goto out; /* Close file creation property list */ - if(H5Pclose(fcpl) < 0) + if (H5Pclose(fcpl) < 0) goto out; - if(H5Fclose(fid) < 0) + if (H5Fclose(fid) < 0) goto out; - /* Re-open HDF5 file, as "plain" file */ - if((fd = HDopen(filename, O_RDONLY)) < 0) + if ((fd = HDopen(filename, O_RDONLY)) < 0) goto out; /* Read userblock data */ @@ -3783,8 +3826,8 @@ verify_userblock( const char* filename) HDassert(nread == USERBLOCK_SIZE); /* Verify userblock data */ - for(u = 0; u < USERBLOCK_SIZE; u++) - if(ub[u] != (char)('a' + (u % 26))) + for (u = 0; u < USERBLOCK_SIZE; u++) + if (ub[u] != (char)('a' + (u % 26))) goto out; /* Close file */ @@ -3793,38 +3836,39 @@ verify_userblock( const char* filename) return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Pclose(fcpl); H5Fclose(fid); - } H5E_END_TRY; - if(fd >= 0) + } + H5E_END_TRY; + if (fd >= 0) HDclose(fd); return -1; } /* end verify_userblock() */ - /*------------------------------------------------------------------------- -* Function: make_userblock_file -* -* Purpose: create a file for the userblock add test -* -*------------------------------------------------------------------------- -*/ + * Function: make_userblock_file + * + * Purpose: create a file for the userblock add test + * + *------------------------------------------------------------------------- + */ static int make_userblock_file(void) { - int fd = -1; /* File descriptor for writing userblock */ - char ub[USERBLOCK_SIZE]; /* User block data */ - ssize_t nwritten; /* # of bytes written */ - size_t u; /* Local index variable */ + int fd = -1; /* File descriptor for writing userblock */ + char ub[USERBLOCK_SIZE]; /* User block data */ + ssize_t H5_ATTR_NDEBUG_UNUSED nwritten; /* # of bytes written */ + size_t u; /* Local index variable */ /* initialize userblock data */ - for(u = 0; u < USERBLOCK_SIZE; u++) + for (u = 0; u < USERBLOCK_SIZE; u++) ub[u] = (char)('a' + (char)(u % 26)); /* open file */ - if((fd = HDopen(FNAME_UB, O_WRONLY|O_CREAT|O_TRUNC, H5_POSIX_CREATE_MODE_RW)) < 0) + if ((fd = HDopen(FNAME_UB, O_WRONLY | O_CREAT | O_TRUNC, H5_POSIX_CREATE_MODE_RW)) < 0) goto out; /* write userblock data */ @@ -3838,147 +3882,135 @@ make_userblock_file(void) out: - if(fd >= 0) + if (fd >= 0) HDclose(fd); return -1; } /*------------------------------------------------------------------------- -* Function: write_dset_in -* -* Purpose: write datasets in LOC_ID -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: November 12, 2003 -* -*------------------------------------------------------------------------- -*/ -static -int write_dset_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t file_id, - int make_diffs /* flag to modify data buffers */) + * Function: write_dset_in + * + * Purpose: write datasets in LOC_ID + * + * Programmer: Pedro Vicente + * + * Date: November 12, 2003 + * + *------------------------------------------------------------------------- + */ +static int +write_dset_in(hid_t loc_id, const char *dset_name, /* for saving reference to dataset*/ + hid_t file_id, int make_diffs /* flag to modify data buffers */) { /* compound datatype */ - typedef struct s_t - { + typedef struct s_t { char a; double b; } s_t; - typedef enum - { - RED, - GREEN - } e_t; - - hid_t did=-1; - hid_t sid=-1; - hid_t tid=-1; - hid_t pid=-1; + typedef enum { RED, GREEN } e_t; + + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + hid_t pid = H5I_INVALID_HID; unsigned i, j; - int val, k, n; - float f; + int val, k, n; + float f; /* create 1D attributes with dimension [2], 2 elements */ - hsize_t dims[1]={2}; - hsize_t dims1r[1]={2}; - char buf1[2][3]= {"ab","de"}; /* string */ - char buf2[2]= {1,2}; /* bitfield, opaque */ - s_t buf3[2]= {{1,2},{3,4}}; /* compound */ - hobj_ref_t buf4[2]; /* reference */ - e_t buf45[2]= {RED,GREEN}; /* enum */ - hvl_t buf5[2]; /* vlen */ - hsize_t dimarray[1]={3}; /* array dimension */ - int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int buf7[2]= {1,2}; /* integer */ - float buf8[2]= {1,2}; /* float */ + hsize_t dims[1] = {2}; + hsize_t dims1r[1] = {2}; + char buf1[2][3] = {"ab", "de"}; /* string */ + char buf2[2] = {1, 2}; /* bitfield, opaque */ + s_t buf3[2] = {{1, 2}, {3, 4}}; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2] = {RED, GREEN}; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1] = {3}; /* array dimension */ + int buf6[2][3] = {{1, 2, 3}, {4, 5, 6}}; /* array */ + int buf7[2] = {1, 2}; /* integer */ + float buf8[2] = {1, 2}; /* float */ /* create 2D attributes with dimension [3][2], 6 elements */ - hsize_t dims2[2]={3,2}; - hsize_t dims2r[2]={1,1}; - char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */ - char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ - s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ - hobj_ref_t buf42[1][1]; /* reference */ - hvl_t buf52[3][2]; /* vlen */ - int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ - int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ - float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ + hsize_t dims2[2] = {3, 2}; + hsize_t dims2r[2] = {1, 1}; + char buf12[6][3] = {"ab", "cd", "ef", "gh", "ij", "kl"}; /* string */ + char buf22[3][2] = {{1, 2}, {3, 4}, {5, 6}}; /* bitfield, opaque */ + s_t buf32[6] = {{1, 2}, {3, 4}, {5, 6}, {7, 8}, {9, 10}, {11, 12}}; /* compound */ + hobj_ref_t buf42[1][1]; /* reference */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3] = {{1, 2, 3}, {4, 5, 6}, {7, 8, 9}, {10, 11, 12}, {13, 14, 15}, {16, 17, 18}}; /* array */ + int buf72[3][2] = {{1, 2}, {3, 4}, {5, 6}}; /* integer */ + float buf82[3][2] = {{1, 2}, {3, 4}, {5, 6}}; /* float */ /* create 3D attributes with dimension [4][3][2], 24 elements */ - hsize_t dims3[3]={4,3,2}; - hsize_t dims3r[3]={1,1,1}; - char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ - char buf23[4][3][2]; /* bitfield, opaque */ - s_t buf33[4][3][2]; /* compound */ - hobj_ref_t buf43[1][1][1]; /* reference */ - hvl_t buf53[4][3][2]; /* vlen */ - int buf63[24][3]; /* array */ - int buf73[4][3][2]; /* integer */ - float buf83[4][3][2]; /* float */ - - - /*------------------------------------------------------------------------- - * 1D - *------------------------------------------------------------------------- - */ + hsize_t dims3[3] = {4, 3, 2}; + hsize_t dims3r[3] = {1, 1, 1}; + char buf13[24][3] = {"ab", "cd", "ef", "gh", "ij", "kl", "mn", "pq", "rs", "tu", "vw", "xz", + "AB", "CD", "EF", "GH", "IJ", "KL", "MN", "PQ", "RS", "TU", "VW", "XZ"}; /* string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[1][1][1]; /* reference */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ + + /*------------------------------------------------------------------------- + * 1D + *------------------------------------------------------------------------- + */ /*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - + * H5T_STRING + *------------------------------------------------------------------------- + */ - if(make_diffs) { - for(i = 0; i < 2; i++) - for(j = 0; j < 2; j++) + if (make_diffs) { + for (i = 0; i < 2; i++) + for (j = 0; j < 2; j++) buf1[i][j] = 'z'; } - if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; - if (write_dset(loc_id,1,dims,"string",tid,buf1) < 0) + if (write_dset(loc_id, 1, dims, "string", tid, buf1) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - /* create hard link */ if (H5Lcreate_hard(loc_id, "string", H5L_SAME_LOC, "string_link", H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ - if(make_diffs) { - for(i = 0; i < 2; i++) + if (make_diffs) { + for (i = 0; i < 2; i++) buf2[i] = buf2[1] = 0; } if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; - if (write_dset(loc_id,1,dims,"bitfield",tid,buf2) < 0) + if (write_dset(loc_id, 1, dims, "bitfield", tid, buf2) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ - if(make_diffs) { - for(i = 0; i < 2; i++) { + if (make_diffs) { + for (i = 0; i < 2; i++) { buf3[i].a = 0; buf3[i].b = 0; } @@ -3988,45 +4020,43 @@ int write_dset_in(hid_t loc_id, goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; - if (write_dset(loc_id,1,dims,"opaque",tid,buf2) < 0) + if (write_dset(loc_id, 1, dims, "opaque", tid, buf2) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ - if(make_diffs) { - for(i = 0; i < 2; i++) + if (make_diffs) { + for (i = 0; i < 2; i++) buf45[i] = GREEN; } - if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; - if (write_dset(loc_id,1,dims,"compound",tid,buf3) < 0) + if (write_dset(loc_id, 1, dims, "compound", tid, buf3) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ /* object references ( H5R_OBJECT ) */ - buf4[0]=0; - buf4[1]=0; - if (dset_name) - { - if (H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + buf4[0] = 0; + buf4[1] = 0; + if (dset_name) { + if (H5Rcreate(&buf4[0], file_id, dset_name, H5R_OBJECT, (hid_t)-1) < 0) goto out; - if (write_dset(loc_id,1,dims1r,"refobj",H5T_STD_REF_OBJ,buf4) < 0) + if (write_dset(loc_id, 1, dims1r, "refobj", H5T_STD_REF_OBJ, buf4) < 0) goto out; } @@ -4034,38 +4064,37 @@ int write_dset_in(hid_t loc_id, if (make_dset_reg_ref(loc_id) < 0) goto out; - /*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ + * H5T_ENUM + *------------------------------------------------------------------------- + */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; - if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; - if (write_dset(loc_id,1,dims,"enum",tid,buf45) < 0) + if (write_dset(loc_id, 1, dims, "enum", tid, buf45) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ + * H5T_VLEN + *------------------------------------------------------------------------- + */ /* Allocate and initialize VL dataset to write */ - buf5[0].len = 1; - buf5[0].p = HDmalloc( 1 * sizeof(int)); - ((int *)buf5[0].p)[0]=1; - buf5[1].len = 2; - buf5[1].p = HDmalloc( 2 * sizeof(int)); + buf5[0].len = 1; + buf5[0].p = HDmalloc(1 * sizeof(int)); + ((int *)buf5[0].p)[0] = 1; + buf5[1].len = 2; + buf5[1].p = HDmalloc(2 * sizeof(int)); ((int *)buf5[1].p)[0] = 2; ((int *)buf5[1].p)[1] = 3; - if(make_diffs) { + if (make_diffs) { ((int *)buf5[0].p)[0] = 0; ((int *)buf5[1].p)[0] = 0; ((int *)buf5[1].p)[1] = 0; @@ -4079,7 +4108,7 @@ int write_dset_in(hid_t loc_id, goto out; if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf5) < 0) goto out; - if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0) + if (H5Treclaim(tid, sid, H5P_DEFAULT, buf5) < 0) goto out; if (H5Dclose(did) < 0) goto out; @@ -4089,13 +4118,13 @@ int write_dset_in(hid_t loc_id, goto out; /*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ + * H5T_ARRAY + *------------------------------------------------------------------------- + */ - if(make_diffs) { - for(i = 0; i < 2; i++) - for(j = 0; j < 3; j++) + if (make_diffs) { + for (i = 0; i < 2; i++) + for (j = 0; j < 3; j++) buf6[i][j] = 0; } @@ -4108,27 +4137,26 @@ int write_dset_in(hid_t loc_id, { - hsize_t TEST_BUFSIZE = (128 * 1024 * 1024); /* 128MB */ - double *dbuf; /* information to write */ + hsize_t TEST_BUFSIZE = (128 * 1024 * 1024); /* 128MB */ + double * dbuf; /* information to write */ size_t size; hsize_t sdims[] = {1}; hsize_t tdims[] = {TEST_BUFSIZE / sizeof(double) + 1}; unsigned u; /* allocate and initialize array data to write */ - size = ( TEST_BUFSIZE / sizeof(double) + 1 ) * sizeof(double); - dbuf = (double*)HDmalloc( size ); - if (NULL == dbuf) - { - HDprintf ("\nError: Cannot allocate memory for \"arrayd\" data buffer size %dMB.\n", (int) size / 1000000 ); + size = (TEST_BUFSIZE / sizeof(double) + 1) * sizeof(double); + dbuf = (double *)HDmalloc(size); + if (NULL == dbuf) { + HDprintf("\nError: Cannot allocate memory for \"arrayd\" data buffer size %dMB.\n", + (int)size / 1000000); goto out; } - for( u = 0; u < TEST_BUFSIZE / sizeof(double) + 1; u++) + for (u = 0; u < TEST_BUFSIZE / sizeof(double) + 1; u++) dbuf[u] = u; - if (make_diffs) - { + if (make_diffs) { dbuf[5] = 0; dbuf[6] = 0; } @@ -4159,107 +4187,100 @@ int write_dset_in(hid_t loc_id, } /*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ - if(make_diffs) { - for(i = 0; i < 2; i++) { + if (make_diffs) { + for (i = 0; i < 2; i++) { buf7[i] = 0; buf8[i] = 0; } } - if (write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0) + if (write_dset(loc_id, 1, dims, "integer", H5T_NATIVE_INT, buf7) < 0) goto out; - if (write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0) + if (write_dset(loc_id, 1, dims, "float", H5T_NATIVE_FLOAT, buf8) < 0) goto out; - /*------------------------------------------------------------------------- - * 2D - *------------------------------------------------------------------------- - */ + * 2D + *------------------------------------------------------------------------- + */ /*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ + * H5T_STRING + *------------------------------------------------------------------------- + */ - if (make_diffs) - { + if (make_diffs) { HDmemset(buf12, 'z', sizeof buf12); } - if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; - if (write_dset(loc_id,2,dims2,"string2D",tid,buf12) < 0) + if (write_dset(loc_id, 2, dims2, "string2D", tid, buf12) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - HDmemset(buf22,0,sizeof buf22); + if (make_diffs) { + HDmemset(buf22, 0, sizeof buf22); } if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; - if (write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0) + if (write_dset(loc_id, 2, dims2, "bitfield2D", tid, buf22) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; - if (write_dset(loc_id,2,dims2,"opaque2D",tid,buf22) < 0) + if (write_dset(loc_id, 2, dims2, "opaque2D", tid, buf22) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - HDmemset(buf32,0,sizeof buf32); + if (make_diffs) { + HDmemset(buf32, 0, sizeof buf32); } - if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; - if (write_dset(loc_id,2,dims2,"compound2D",tid,buf32) < 0) + if (write_dset(loc_id, 2, dims2, "compound2D", tid, buf32) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ /* Create references to dataset */ - if (dset_name) - { + if (dset_name) { if (H5Rcreate(&buf42[0][0], file_id, dset_name, H5R_OBJECT, (hid_t)-1) < 0) goto out; if (write_dset(loc_id, 2, dims2r, "refobj2D", H5T_STD_REF_OBJ, buf42) < 0) @@ -4267,36 +4288,36 @@ int write_dset_in(hid_t loc_id, } /*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ + * H5T_ENUM + *------------------------------------------------------------------------- + */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; - if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; - if (write_dset(loc_id,2,dims2,"enum2D",tid,0) < 0) + if (write_dset(loc_id, 2, dims2, "enum2D", tid, 0) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ + * H5T_VLEN + *------------------------------------------------------------------------- + */ /* Allocate and initialize VL dataset to write */ n = 0; - for(i = 0; i < 3; i++) { - for(j = 0; j < 2; j++) { + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { unsigned l; - buf52[i][j].p = HDmalloc((i + 1) * sizeof(int)); + buf52[i][j].p = HDmalloc((i + 1) * sizeof(int)); buf52[i][j].len = (size_t)(i + 1); - for(l = 0; l < i + 1; l++) { - if(make_diffs) + for (l = 0; l < i + 1; l++) { + if (make_diffs) ((int *)buf52[i][j].p)[l] = 0; else ((int *)buf52[i][j].p)[l] = n++; @@ -4312,7 +4333,7 @@ int write_dset_in(hid_t loc_id, goto out; if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf52) < 0) goto out; - if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0) + if (H5Treclaim(tid, sid, H5P_DEFAULT, buf52) < 0) goto out; if (H5Dclose(did) < 0) goto out; @@ -4322,16 +4343,14 @@ int write_dset_in(hid_t loc_id, goto out; /*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ + * H5T_ARRAY + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - HDmemset(buf62,0,sizeof buf62); + if (make_diffs) { + HDmemset(buf62, 0, sizeof buf62); } - if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) goto out; if (write_dset(loc_id, 2, dims2, "array2D", tid, buf62) < 0) @@ -4340,17 +4359,15 @@ int write_dset_in(hid_t loc_id, goto out; /*------------------------------------------------------------------------- - * H5T_INTEGER, write a fill value - *------------------------------------------------------------------------- - */ - + * H5T_INTEGER, write a fill value + *------------------------------------------------------------------------- + */ - if(make_diffs) { + if (make_diffs) { HDmemset(buf72, 0, sizeof buf72); HDmemset(buf82, 0, sizeof buf82); } - if ((pid = H5Pcreate(H5P_DATASET_CREATE)) < 0) goto out; if ((sid = H5Screate_simple(2, dims2, NULL)) < 0) @@ -4367,49 +4384,46 @@ int write_dset_in(hid_t loc_id, goto out; /*------------------------------------------------------------------------- - * H5T_FLOAT - *------------------------------------------------------------------------- - */ + * H5T_FLOAT + *------------------------------------------------------------------------- + */ - if (write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0) + if (write_dset(loc_id, 2, dims2, "float2D", H5T_NATIVE_FLOAT, buf82) < 0) goto out; - /*------------------------------------------------------------------------- - * 3D - *------------------------------------------------------------------------- - */ + * 3D + *------------------------------------------------------------------------- + */ /*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ + * H5T_STRING + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - HDmemset(buf13,'z',sizeof buf13); + if (make_diffs) { + HDmemset(buf13, 'z', sizeof buf13); } if ((tid = H5Tcopy(H5T_C_S1)) < 0) goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; - if (write_dset(loc_id,3,dims3,"string3D",tid,buf13) < 0) + if (write_dset(loc_id, 3, dims3, "string3D", tid, buf13) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ - + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ - n=1; - for(i = 0; i < 4; i++) { - for(j = 0; j < 3; j++) { - for(k = 0; k < 2; k++) { - if(make_diffs) + n = 1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) buf23[i][j][k] = 0; else buf23[i][j][k] = (char)(n++); @@ -4417,37 +4431,36 @@ int write_dset_in(hid_t loc_id, } } - if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; - if (write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0) + if (write_dset(loc_id, 3, dims3, "bitfield3D", tid, buf23) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; - if (write_dset(loc_id,3,dims3,"opaque3D",tid,buf23) < 0) + if (write_dset(loc_id, 3, dims3, "opaque3D", tid, buf23) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ - n=1; - for(i = 0; i < 4; i++) { - for(j = 0; j < 3; j++) { - for(k = 0; k < 2; k++) { - if(make_diffs) { + n = 1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { buf33[i][j][k].a = 0; buf33[i][j][k].b = 0; } @@ -4459,25 +4472,23 @@ int write_dset_in(hid_t loc_id, } } - - if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; - if (write_dset(loc_id,3,dims3,"compound3D",tid,buf33) < 0) + if (write_dset(loc_id, 3, dims3, "compound3D", tid, buf33) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ /* Create references to dataset */ - if (dset_name) - { + if (dset_name) { if (H5Rcreate(&buf43[0][0][0], file_id, dset_name, H5R_OBJECT, (hid_t)-1) < 0) goto out; if (write_dset(loc_id, 3, dims3r, "refobj3D", H5T_STD_REF_OBJ, buf43) < 0) @@ -4485,37 +4496,37 @@ int write_dset_in(hid_t loc_id, } /*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ + * H5T_ENUM + *------------------------------------------------------------------------- + */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; - if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; - if (write_dset(loc_id,3,dims3,"enum3D",tid,0) < 0) + if (write_dset(loc_id, 3, dims3, "enum3D", tid, 0) < 0) goto out; if (H5Tclose(tid) < 0) goto out; /*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ + * H5T_VLEN + *------------------------------------------------------------------------- + */ /* Allocate and initialize VL dataset to write */ n = 0; - for(i = 0; i < 4; i++) { - for(j = 0; j < 3; j++) { - for(k = 0; k < 2; k++) { + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { unsigned l; - buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int)); + buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int)); buf53[i][j][k].len = (size_t)(i + 1); - for(l = 0; l < i + 1; l++) { - if(make_diffs) + for (l = 0; l < i + 1; l++) { + if (make_diffs) ((int *)buf53[i][j][k].p)[l] = 0; else ((int *)buf53[i][j][k].p)[l] = n++; @@ -4533,7 +4544,7 @@ int write_dset_in(hid_t loc_id, if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf53) < 0) goto out; - if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0) + if (H5Treclaim(tid, sid, H5P_DEFAULT, buf53) < 0) goto out; if (H5Dclose(did) < 0) @@ -4544,15 +4555,14 @@ int write_dset_in(hid_t loc_id, goto out; /*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - + * H5T_ARRAY + *------------------------------------------------------------------------- + */ n = 1; - for(i = 0; i < 24; i++) { - for(j = 0; j < dimarray[0]; j++) { - if(make_diffs) + for (i = 0; i < 24; i++) { + for (j = 0; j < dimarray[0]; j++) { + if (make_diffs) buf63[i][j] = 0; else buf63[i][j] = n++; @@ -4567,76 +4577,77 @@ int write_dset_in(hid_t loc_id, goto out; /*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - n=1; f=1; + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + n = 1; + f = 1; for (i = 0; i < 4; i++) { for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) { if (make_diffs) { - buf73[i][j][k]=0; - buf83[i][j][k]=0; + buf73[i][j][k] = 0; + buf83[i][j][k] = 0; } else { - buf73[i][j][k]=n++; - buf83[i][j][k]=f++; + buf73[i][j][k] = n++; + buf83[i][j][k] = f++; } } } } - if (write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0) + if (write_dset(loc_id, 3, dims3, "integer3D", H5T_NATIVE_INT, buf73) < 0) goto out; - if (write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0) + if (write_dset(loc_id, 3, dims3, "float3D", H5T_NATIVE_FLOAT, buf83) < 0) goto out; return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Pclose(pid); H5Sclose(sid); H5Dclose(did); H5Tclose(tid); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } - - /*------------------------------------------------------------------------- -* Function: make_dset_reg_ref -* -* Purpose: write dataset region references -* -*------------------------------------------------------------------------- -*/ + * Function: make_dset_reg_ref + * + * Purpose: write dataset region references + * + *------------------------------------------------------------------------- + */ #define SPACE1_RANK 1 #define SPACE1_DIM1 1 #define SPACE2_RANK 2 #define SPACE2_DIM1 10 #define SPACE2_DIM2 10 -static -int make_dset_reg_ref(hid_t loc_id) +static int +make_dset_reg_ref(hid_t loc_id) { - hid_t did1=-1; /* Dataset ID */ - hid_t did2=-1; /* Dereferenced dataset ID */ - hid_t sid1=-1; /* Dataspace ID #1 */ - hid_t sid2=-1; /* Dataspace ID #2 */ - hsize_t dims1[] = {SPACE1_DIM1}; - hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2}; - hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ - hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */ - hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ - hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */ - hdset_reg_ref_t *wbuf=NULL; /* buffer to write to disk */ - int *dwbuf=NULL; /* Buffer for writing numeric data to disk */ - int i; /* counting variables */ - int retval = -1; /* return value */ + hid_t did1 = H5I_INVALID_HID; /* Dataset ID */ + hid_t did2 = H5I_INVALID_HID; /* Dereferenced dataset ID */ + hid_t sid1 = H5I_INVALID_HID; /* Dataspace ID #1 */ + hid_t sid2 = H5I_INVALID_HID; /* Dataspace ID #2 */ + hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2}; + hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ + hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */ + hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ + hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */ + hdset_reg_ref_t *wbuf = NULL; /* buffer to write to disk */ + int * dwbuf = NULL; /* Buffer for writing numeric data to disk */ + int i; /* counting variables */ + int retval = -1; /* return value */ /* Allocate write & read buffers */ - wbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1); + wbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1); dwbuf = (int *)HDmalloc(sizeof(int) * SPACE2_DIM1 * SPACE2_DIM2); /* Create dataspace for datasets */ @@ -4644,7 +4655,8 @@ int make_dset_reg_ref(hid_t loc_id) goto out; /* Create a dataset */ - if ((did2 = H5Dcreate2(loc_id, "dsetreg", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((did2 = H5Dcreate2(loc_id, "dsetreg", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, + H5P_DEFAULT)) < 0) goto out; for (i = 0; i < SPACE2_DIM1 * SPACE2_DIM2; i++) @@ -4659,24 +4671,28 @@ int make_dset_reg_ref(hid_t loc_id) goto out; /* Create a dataset */ - if ((did1 = H5Dcreate2(loc_id, "refreg", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((did1 = H5Dcreate2(loc_id, "refreg", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, + H5P_DEFAULT)) < 0) goto out; /* Select 6x6 hyperslab for first reference */ - start[0] = 2; start[1] = 2; - stride[0] = 1; stride[1] = 1; - count[0] = 6; count[1] = 6; - block[0] = 1; block[1] = 1; + start[0] = 2; + start[1] = 2; + stride[0] = 1; + stride[1] = 1; + count[0] = 6; + count[1] = 6; + block[0] = 1; + block[1] = 1; if (H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block) < 0) goto out; - /* Store dataset region */ if (H5Rcreate(&wbuf[0], loc_id, "dsetreg", H5R_DATASET_REGION, sid2) < 0) goto out; /* Write selection to disk */ - if (H5Dwrite(did1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf) < 0) + if (H5Dwrite(did1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf) < 0) goto out; /* Close all objects */ @@ -4692,9 +4708,9 @@ int make_dset_reg_ref(hid_t loc_id) retval = 0; out: - if(wbuf) + if (wbuf) HDfree(wbuf); - if(dwbuf) + if (dwbuf) HDfree(dwbuf); H5E_BEGIN_TRY @@ -4703,105 +4719,96 @@ out: H5Sclose(sid2); H5Dclose(did1); H5Dclose(did2); - } H5E_END_TRY; + } + H5E_END_TRY; return retval; } /*------------------------------------------------------------------------- -* Function: write_attr_in -* -* Purpose: write attributes in LOC_ID (dataset, group, named datatype) -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: November 12, 2003 -* -*------------------------------------------------------------------------- -*/ - -static -int write_attr_in(hid_t loc_id, - const char* dset_name, /* for saving reference to dataset*/ - hid_t fid, /* for reference create */ - int make_diffs /* flag to modify data buffers */) + * Function: write_attr_in + * + * Purpose: write attributes in LOC_ID (dataset, group, named datatype) + * + * Programmer: Pedro Vicente + * + * Date: November 12, 2003 + * + *------------------------------------------------------------------------- + */ + +static int +write_attr_in(hid_t loc_id, const char *dset_name, /* for saving reference to dataset*/ + hid_t fid, /* for reference create */ + int make_diffs /* flag to modify data buffers */) { /* Compound datatype */ - typedef struct s_t - { + typedef struct s_t { char a; double b; } s_t; - typedef enum - { - RED, - GREEN - } e_t; - - hid_t aid = -1; - hid_t sid = -1; - hid_t tid = -1; - int val, j, k, n; + typedef enum { RED, GREEN } e_t; + + hid_t aid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + int val, j, k, n; unsigned i; - float f; + float f; /* create 1D attributes with dimension [2], 2 elements */ - hsize_t dims[1]={2}; - char buf1[2][3]= {"ab","de"}; /* string */ - char buf2[2]= {1,2}; /* bitfield, opaque */ - s_t buf3[2]= {{1,2},{3,4}}; /* compound */ - hobj_ref_t buf4[2]; /* reference */ - e_t buf45[2]= {RED,RED}; /* enum */ - hvl_t buf5[2]; /* vlen */ - hsize_t dimarray[1]={3}; /* array dimension */ - int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ - int buf7[2]= {1,2}; /* integer */ - float buf8[2]= {1,2}; /* float */ + hsize_t dims[1] = {2}; + char buf1[2][3] = {"ab", "de"}; /* string */ + char buf2[2] = {1, 2}; /* bitfield, opaque */ + s_t buf3[2] = {{1, 2}, {3, 4}}; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2] = {RED, RED}; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1] = {3}; /* array dimension */ + int buf6[2][3] = {{1, 2, 3}, {4, 5, 6}}; /* array */ + int buf7[2] = {1, 2}; /* integer */ + float buf8[2] = {1, 2}; /* float */ /* create 2D attributes with dimension [3][2], 6 elements */ - hsize_t dims2[2]={3,2}; - char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */ - char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ - s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ - hobj_ref_t buf42[3][2]; /* reference */ - e_t buf452[3][2]; /* enum */ - hvl_t buf52[3][2]; /* vlen */ - int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ - int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ - float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ + hsize_t dims2[2] = {3, 2}; + char buf12[6][3] = {"ab", "cd", "ef", "gh", "ij", "kl"}; /* string */ + char buf22[3][2] = {{1, 2}, {3, 4}, {5, 6}}; /* bitfield, opaque */ + s_t buf32[6] = {{1, 2}, {3, 4}, {5, 6}, {7, 8}, {9, 10}, {11, 12}}; /* compound */ + hobj_ref_t buf42[3][2]; /* reference */ + e_t buf452[3][2]; /* enum */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3] = {{1, 2, 3}, {4, 5, 6}, {7, 8, 9}, {10, 11, 12}, {13, 14, 15}, {16, 17, 18}}; /* array */ + int buf72[3][2] = {{1, 2}, {3, 4}, {5, 6}}; /* integer */ + float buf82[3][2] = {{1, 2}, {3, 4}, {5, 6}}; /* float */ /* create 3D attributes with dimension [4][3][2], 24 elements */ - hsize_t dims3[3]={4,3,2}; - char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq", - "rs","tu","vw","xz","AB","CD","EF","GH", - "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ - char buf23[4][3][2]; /* bitfield, opaque */ - s_t buf33[4][3][2]; /* compound */ - hobj_ref_t buf43[4][3][2]; /* reference */ - e_t buf453[4][3][2]; /* enum */ - hvl_t buf53[4][3][2]; /* vlen */ - int buf63[24][3]; /* array */ - int buf73[4][3][2]; /* integer */ - float buf83[4][3][2]; /* float */ - - - /*------------------------------------------------------------------------- - * 1D attributes - *------------------------------------------------------------------------- - */ + hsize_t dims3[3] = {4, 3, 2}; + char buf13[24][3] = {"ab", "cd", "ef", "gh", "ij", "kl", "mn", "pq", "rs", "tu", "vw", "xz", + "AB", "CD", "EF", "GH", "IJ", "KL", "MN", "PQ", "RS", "TU", "VW", "XZ"}; /* string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[4][3][2]; /* reference */ + e_t buf453[4][3][2]; /* enum */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ + + /*------------------------------------------------------------------------- + * 1D attributes + *------------------------------------------------------------------------- + */ /*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ + * H5T_STRING + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<2; j++) - { - buf1[i][j]='z'; + if (make_diffs) { + for (i = 0; i < 2; i++) + for (j = 0; j < 2; j++) { + buf1[i][j] = 'z'; } } /* @@ -4820,21 +4827,20 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; - if (make_attr(loc_id,1,dims,"string",tid,buf1) < 0) + if (make_attr(loc_id, 1, dims, "string", tid, buf1) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - for (i=0; i<2; i++) - buf2[i]=buf2[1]=0; + if (make_diffs) { + for (i = 0; i < 2; i++) + buf2[i] = buf2[1] = 0; } /* buf2[2]= {1,2}; @@ -4850,16 +4856,16 @@ int write_attr_in(hid_t loc_id, if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; - if (make_attr(loc_id,1,dims,"bitfield",tid,buf2) < 0) + if (make_attr(loc_id, 1, dims, "bitfield", tid, buf2) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ /* buf2[2]= {1,2}; @@ -4877,22 +4883,21 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; - if (make_attr(loc_id,1,dims,"opaque",tid,buf2) < 0) + if (make_attr(loc_id, 1, dims, "opaque", tid, buf2) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf3[i].a=0; buf3[i].b=0; + if (make_diffs) { + for (i = 0; i < 2; i++) { + buf3[i].a = 0; + buf3[i].b = 0; } } @@ -4909,43 +4914,39 @@ int write_attr_in(hid_t loc_id, [ 1 ] 4 5 1 */ - if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; - if (make_attr(loc_id,1,dims,"compound",tid,buf3) < 0) + if (make_attr(loc_id, 1, dims, "compound", tid, buf3) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ /* object references ( H5R_OBJECT */ - if (dset_name) - { - if (H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + if (dset_name) { + if (H5Rcreate(&buf4[0], fid, dset_name, H5R_OBJECT, (hid_t)-1) < 0) goto out; - if (H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + if (H5Rcreate(&buf4[1], fid, dset_name, H5R_OBJECT, (hid_t)-1) < 0) goto out; - if (make_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4) < 0) + if (make_attr(loc_id, 1, dims, "reference", H5T_STD_REF_OBJ, buf4) < 0) goto out; } - /*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - if (make_diffs) - { - for (i=0; i<2; i++) - { - buf45[i]=GREEN; + * H5T_ENUM + *------------------------------------------------------------------------- + */ + if (make_diffs) { + for (i = 0; i < 2; i++) { + buf45[i] = GREEN; } } /* @@ -4960,33 +4961,32 @@ int write_attr_in(hid_t loc_id, */ if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; - if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; - if (make_attr(loc_id,1,dims,"enum",tid,buf45) < 0) + if (make_attr(loc_id, 1, dims, "enum", tid, buf45) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ + * H5T_VLEN + *------------------------------------------------------------------------- + */ /* Allocate and initialize VL dataset to write */ - buf5[0].len = 1; - buf5[0].p = HDmalloc( 1 * sizeof(int)); - ((int *)buf5[0].p)[0]=1; - buf5[1].len = 2; - buf5[1].p = HDmalloc(2 * sizeof(int)); + buf5[0].len = 1; + buf5[0].p = HDmalloc(1 * sizeof(int)); + ((int *)buf5[0].p)[0] = 1; + buf5[1].len = 2; + buf5[1].p = HDmalloc(2 * sizeof(int)); ((int *)buf5[1].p)[0] = 2; ((int *)buf5[1].p)[1] = 3; - if(make_diffs) - { + if (make_diffs) { ((int *)buf5[0].p)[0] = 0; ((int *)buf5[1].p)[0] = 0; ((int *)buf5[1].p)[1] = 0; @@ -5009,29 +5009,27 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Awrite(aid, tid, buf5) < 0) goto out; - if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0) + if (H5Treclaim(tid, sid, H5P_DEFAULT, buf5) < 0) goto out; if (H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; if (H5Sclose(sid) < 0) goto out; - sid = -1; + sid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ + * H5T_ARRAY + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - for (i=0; i<2; i++) - for (j=0; j<3; j++) - { - buf6[i][j]=0; + if (make_diffs) { + for (i = 0; i < 2; i++) + for (j = 0; j < 3; j++) { + buf6[i][j] = 0; } } /* @@ -5054,19 +5052,17 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ - if(make_diffs) - { - for(i = 0; i < 2; i++) - { - buf7[i]=0; - buf8[i]=0; + if (make_diffs) { + for (i = 0; i < 2; i++) { + buf7[i] = 0; + buf8[i] = 0; } } @@ -5084,23 +5080,21 @@ int write_attr_in(hid_t loc_id, [ 0 ] 1 0 1 [ 1 ] 2 0 2 */ - if (make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0) + if (make_attr(loc_id, 1, dims, "integer", H5T_NATIVE_INT, buf7) < 0) goto out; - if (make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0) + if (make_attr(loc_id, 1, dims, "float", H5T_NATIVE_FLOAT, buf8) < 0) goto out; - /*------------------------------------------------------------------------- - * 2D attributes - *------------------------------------------------------------------------- - */ + * 2D attributes + *------------------------------------------------------------------------- + */ /*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ - if (make_diffs) - { + * H5T_STRING + *------------------------------------------------------------------------- + */ + if (make_diffs) { HDmemset(buf12, 'z', sizeof buf12); } @@ -5128,20 +5122,19 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; - if (make_attr(loc_id,2,dims2,"string2D",tid,buf12) < 0) + if (make_attr(loc_id, 2, dims2, "string2D", tid, buf12) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - HDmemset(buf22,0,sizeof buf22); + if (make_diffs) { + HDmemset(buf22, 0, sizeof buf22); } /* @@ -5158,19 +5151,18 @@ int write_attr_in(hid_t loc_id, [ 2 1 ] 6 0 6 */ - if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; - if (make_attr(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0) + if (make_attr(loc_id, 2, dims2, "bitfield2D", tid, buf22) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ /* buf22[3][2]= {{1,2},{3,4},{5,6}}; @@ -5189,19 +5181,18 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; - if (make_attr(loc_id,2,dims2,"opaque2D",tid,buf22) < 0) + if (make_attr(loc_id, 2, dims2, "opaque2D", tid, buf22) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ - if (make_diffs) - { - HDmemset(buf32,0,sizeof buf32); + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + if (make_diffs) { + HDmemset(buf32, 0, sizeof buf32); } /* @@ -5218,47 +5209,44 @@ int write_attr_in(hid_t loc_id, [ 2 1 ] 6 0 6 */ - - if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; - if (make_attr(loc_id,2,dims2,"compound2D",tid,buf32) < 0) + if (make_attr(loc_id, 2, dims2, "compound2D", tid, buf32) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 3; i++) - { - for (j = 0; j < 2; j++) - { - if (H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + if (dset_name) { + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { + if (H5Rcreate(&buf42[i][j], fid, dset_name, H5R_OBJECT, (hid_t)-1) < 0) goto out; } } - if (make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42) < 0) + if (make_attr(loc_id, 2, dims2, "reference2D", H5T_STD_REF_OBJ, buf42) < 0) goto out; } /*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ - for (i=0; i<3; i++) - { - for (j=0; j<2; j++) - { - if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED; + * H5T_ENUM + *------------------------------------------------------------------------- + */ + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { + if (make_diffs) + buf452[i][j] = GREEN; + else + buf452[i][j] = RED; } } @@ -5276,31 +5264,31 @@ int write_attr_in(hid_t loc_id, if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; - if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; - if (make_attr(loc_id,2,dims2,"enum2D",tid,buf452) < 0) + if (make_attr(loc_id, 2, dims2, "enum2D", tid, buf452) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ + * H5T_VLEN + *------------------------------------------------------------------------- + */ /* Allocate and initialize VL dataset to write */ - n=0; - for(i = 0; i < 3; i++) { - for(j = 0; j < 2; j++) { + n = 0; + for (i = 0; i < 3; i++) { + for (j = 0; j < 2; j++) { unsigned l; - buf52[i][j].p = HDmalloc((i + 1) * sizeof(int)); + buf52[i][j].p = HDmalloc((i + 1) * sizeof(int)); buf52[i][j].len = (size_t)(i + 1); - for(l = 0; l < i + 1; l++) - if(make_diffs) + for (l = 0; l < i + 1; l++) + if (make_diffs) ((int *)buf52[i][j].p)[l] = 0; else ((int *)buf52[i][j].p)[l] = n++; @@ -5331,26 +5319,25 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Awrite(aid, tid, buf52) < 0) goto out; - if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0) + if (H5Treclaim(tid, sid, H5P_DEFAULT, buf52) < 0) goto out; if (H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; if (H5Sclose(sid) < 0) goto out; - sid = -1; + sid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ + * H5T_ARRAY + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - HDmemset(buf62,0,sizeof buf62); + if (make_diffs) { + HDmemset(buf62, 0, sizeof buf62); } /* buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; @@ -5384,15 +5371,14 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ - if(make_diffs) - { + if (make_diffs) { HDmemset(buf72, 0, sizeof buf72); HDmemset(buf82, 0, sizeof buf82); } @@ -5418,25 +5404,23 @@ int write_attr_in(hid_t loc_id, [ 2 1 ] 6 0 6 */ - if (make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72) < 0) + if (make_attr(loc_id, 2, dims2, "integer2D", H5T_NATIVE_INT, buf72) < 0) goto out; - if (make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0) + if (make_attr(loc_id, 2, dims2, "float2D", H5T_NATIVE_FLOAT, buf82) < 0) goto out; - /*------------------------------------------------------------------------- - * 3D attributes - *------------------------------------------------------------------------- - */ + * 3D attributes + *------------------------------------------------------------------------- + */ /*------------------------------------------------------------------------- - * H5T_STRING - *------------------------------------------------------------------------- - */ + * H5T_STRING + *------------------------------------------------------------------------- + */ - if (make_diffs) - { - HDmemset(buf13,'z',sizeof buf13); + if (make_diffs) { + HDmemset(buf13, 'z', sizeof buf13); } /* @@ -5500,22 +5484,22 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tset_size(tid, (size_t)2) < 0) goto out; - if (make_attr(loc_id,3,dims3,"string3D",tid,buf13) < 0) + if (make_attr(loc_id, 3, dims3, "string3D", tid, buf13) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_BITFIELD - *------------------------------------------------------------------------- - */ + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ - n=1; - for(i = 0; i < 4; i++) { - for(j = 0; j < 3; j++) { - for(k = 0; k < 2; k++) { - if(make_diffs) + n = 1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) buf23[i][j][k] = 0; else buf23[i][j][k] = (char)(n++); @@ -5554,36 +5538,36 @@ int write_attr_in(hid_t loc_id, if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) goto out; - if (make_attr(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0) + if (make_attr(loc_id, 3, dims3, "bitfield3D", tid, buf23) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_OPAQUE - *------------------------------------------------------------------------- - */ + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) goto out; if (H5Tset_tag(tid, "1-byte opaque type") < 0) goto out; - if (make_attr(loc_id,3,dims3,"opaque3D",tid,buf23) < 0) + if (make_attr(loc_id, 3, dims3, "opaque3D", tid, buf23) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_COMPOUND - *------------------------------------------------------------------------- - */ + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ - n=1; - for(i = 0; i < 4; i++) { - for(j = 0; j < 3; j++) { - for(k = 0; k < 2; k++) { - if(make_diffs) { + n = 1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { buf33[i][j][k].a = 0; buf33[i][j][k].b = 0; } @@ -5646,58 +5630,48 @@ int write_attr_in(hid_t loc_id, [ 3 2 1 ] 48 0 48 */ - - - if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) goto out; if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) goto out; if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) goto out; - if (make_attr(loc_id,3,dims3,"compound3D",tid,buf33) < 0) + if (make_attr(loc_id, 3, dims3, "compound3D", tid, buf33) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_REFERENCE - *------------------------------------------------------------------------- - */ + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ /* Create references to dataset */ - if (dset_name) - { - for (i = 0; i < 4; i++) - { - for (j = 0; j < 3; j++) - { + if (dset_name) { + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { for (k = 0; k < 2; k++) - if (H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + if (H5Rcreate(&buf43[i][j][k], fid, dset_name, H5R_OBJECT, (hid_t)-1) < 0) goto out; } } - if (make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43) < 0) + if (make_attr(loc_id, 3, dims3, "reference3D", H5T_STD_REF_OBJ, buf43) < 0) goto out; } /*------------------------------------------------------------------------- - * H5T_ENUM - *------------------------------------------------------------------------- - */ + * H5T_ENUM + *------------------------------------------------------------------------- + */ - for (i = 0; i < 4; i++) - { - for (j = 0; j < 3; j++) - { - for (k = 0; k < 2; k++) - { - if (make_diffs) - { - buf453[i][j][k]=RED; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { + buf453[i][j][k] = RED; } - else - { - buf453[i][j][k]=GREEN; + else { + buf453[i][j][k] = GREEN; } } } @@ -5732,35 +5706,31 @@ int write_attr_in(hid_t loc_id, [ 3 2 1 ] GREEN RED */ - if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) goto out; - if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) goto out; if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) goto out; - if (make_attr(loc_id,3,dims3,"enum3D",tid,buf453) < 0) + if (make_attr(loc_id, 3, dims3, "enum3D", tid, buf453) < 0) goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_VLEN - *------------------------------------------------------------------------- - */ + * H5T_VLEN + *------------------------------------------------------------------------- + */ /* Allocate and initialize VL dataset to write */ - n=0; - for (i = 0; i < 4; i++) - { - for (j = 0; j < 3; j++) - { - for (k = 0; k < 2; k++) - { + n = 0; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { unsigned l; - buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int)); + buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int)); buf53[i][j][k].len = (size_t)i + 1; for (l = 0; l < i + 1; l++) if (make_diffs) @@ -5793,29 +5763,29 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Awrite(aid, tid, buf53) < 0) goto out; - if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0) + if (H5Treclaim(tid, sid, H5P_DEFAULT, buf53) < 0) goto out; if (H5Aclose(aid) < 0) goto out; - aid = -1; + aid = H5I_INVALID_HID; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; if (H5Sclose(sid) < 0) goto out; - sid = -1; + sid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_ARRAY - *------------------------------------------------------------------------- - */ - n=1; - for (i = 0; i < 24; i++) - { - for (j = 0; j < (int)dimarray[0]; j++) - { - if (make_diffs) buf63[i][j]=0; - else buf63[i][j]=n++; + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + n = 1; + for (i = 0; i < 24; i++) { + for (j = 0; j < (int)dimarray[0]; j++) { + if (make_diffs) + buf63[i][j] = 0; + else + buf63[i][j] = n++; } } /* @@ -5837,26 +5807,22 @@ int write_attr_in(hid_t loc_id, goto out; if (H5Tclose(tid) < 0) goto out; - tid = -1; + tid = H5I_INVALID_HID; /*------------------------------------------------------------------------- - * H5T_INTEGER and H5T_FLOAT - *------------------------------------------------------------------------- - */ - n = 1; f = 1; - for(i = 0; i < 4; i++) - { - for(j = 0; j < 3; j++) - { - for(k = 0; k < 2; k++) - { - if(make_diffs) - { + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + n = 1; + f = 1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { buf73[i][j][k] = 0; buf83[i][j][k] = 0; } - else - { + else { buf73[i][j][k] = n++; buf83[i][j][k] = f++; } @@ -5879,93 +5845,109 @@ int write_attr_in(hid_t loc_id, [ 1 1 1 ] 10 0 10 etc */ - if (make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0) + if (make_attr(loc_id, 3, dims3, "integer3D", H5T_NATIVE_INT, buf73) < 0) goto out; - if (make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0) + if (make_attr(loc_id, 3, dims3, "float3D", H5T_NATIVE_FLOAT, buf83) < 0) goto out; - return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Aclose(aid); H5Sclose(sid); H5Tclose(tid); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } - - - /*------------------------------------------------------------------------- -* Function: make_dset -* -* Purpose: utility function to create and write a dataset in LOC_ID -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: November 12, 2003 -* -*------------------------------------------------------------------------- -*/ -static -int make_dset(hid_t loc_id, - const char *name, - hid_t sid, - hid_t dcpl, - void *buf) + * Function: make_dset + * + * Purpose: utility function to create and write a dataset in LOC_ID + * + * Programmer: Pedro Vicente + * + * Date: November 12, 2003 + * + *------------------------------------------------------------------------- + */ +static int +make_dset(hid_t loc_id, const char *name, hid_t sid, hid_t dcpl, void *buf) { - hid_t did=-1; + hid_t did = H5I_INVALID_HID; + hid_t dxpl_id = H5P_DEFAULT; if ((did = H5Dcreate2(loc_id, name, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) return -1; - if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + +#ifdef H5_HAVE_PARALLEL + /* Set up collective writes for parallel driver */ + if (h5_using_parallel_driver(NULL)) { + if ((dxpl_id = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto out; + if (H5Pset_dxpl_mpio(dxpl_id, H5FD_MPIO_COLLECTIVE) < 0) + goto out; + } +#endif + + if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, dxpl_id, buf) < 0) + goto out; + if (dxpl_id != H5P_DEFAULT && H5Pclose(dxpl_id) < 0) goto out; if (H5Dclose(did) < 0) return -1; return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Dclose(did); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } - /*------------------------------------------------------------------------- -* Function: write_dset -* -* Purpose: utility function to create and write a dataset in LOC_ID -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: November 12, 2003 -* -*------------------------------------------------------------------------- -*/ -static -int write_dset( hid_t loc_id, - int rank, - hsize_t *dims, - const char *dset_name, - hid_t tid, - void *buf ) + * Function: write_dset + * + * Purpose: utility function to create and write a dataset in LOC_ID + * + * Programmer: Pedro Vicente + * + * Date: November 12, 2003 + * + *------------------------------------------------------------------------- + */ +static int +write_dset(hid_t loc_id, int rank, hsize_t *dims, const char *dset_name, hid_t tid, void *buf) { - hid_t did=-1; - hid_t sid=-1; + hid_t did = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t dxpl_id = H5P_DEFAULT; if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) return -1; if ((did = H5Dcreate2(loc_id, dset_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if (buf) - { - if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + if (buf) { +#ifdef H5_HAVE_PARALLEL + /* Set up collective writes for parallel driver */ + if (h5_using_parallel_driver(NULL)) { + if ((dxpl_id = H5Pcreate(H5P_DATASET_XFER)) < 0) + goto out; + if (H5Pset_dxpl_mpio(dxpl_id, H5FD_MPIO_COLLECTIVE) < 0) + goto out; + } +#endif + + if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, dxpl_id, buf) < 0) goto out; } + if (dxpl_id != H5P_DEFAULT && H5Pclose(dxpl_id) < 0) + goto out; if (H5Dclose(did) < 0) goto out; if (H5Sclose(sid) < 0) @@ -5974,44 +5956,39 @@ int write_dset( hid_t loc_id, return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { + H5Pclose(dxpl_id); H5Dclose(did); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } - - /*------------------------------------------------------------------------- -* Function: make_attr -* -* Purpose: utility function to write an attribute in LOC_ID -* -* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu -* -* Date: November 12, 2003 -* -*------------------------------------------------------------------------- -*/ -static -int make_attr(hid_t loc_id, - int rank, - hsize_t *dims, - const char *attr_name, - hid_t tid, - void *buf) + * Function: make_attr + * + * Purpose: utility function to write an attribute in LOC_ID + * + * Programmer: Pedro Vicente + * + * Date: November 12, 2003 + * + *------------------------------------------------------------------------- + */ +static int +make_attr(hid_t loc_id, int rank, hsize_t *dims, const char *attr_name, hid_t tid, void *buf) { - hid_t aid; - hid_t sid; + hid_t aid; + hid_t sid; if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) return -1; if ((aid = H5Acreate2(loc_id, attr_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(buf) - { - if(H5Awrite(aid, tid, buf) < 0) + if (buf) { + if (H5Awrite(aid, tid, buf) < 0) goto out; } if (H5Aclose(aid) < 0) @@ -6021,119 +5998,120 @@ int make_attr(hid_t loc_id, return 0; out: - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Aclose(aid); H5Sclose(sid); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } - /*------------------------------------------------------------------------- -* Function: make_named_dtype -* -* Purpose: create a file with named datatypes in various configurations -* -*------------------------------------------------------------------------- -*/ -static -int make_named_dtype(hid_t loc_id) + * Function: make_named_dtype + * + * Purpose: create a file with named datatypes in various configurations + * + *------------------------------------------------------------------------- + */ +static int +make_named_dtype(hid_t loc_id) { - hsize_t dims[1] ={3}; - hid_t did=-1; - hid_t aid=-1; - hid_t sid=-1; - hid_t tid=-1; - hid_t gid=-1; + hsize_t dims[1] = {3}; + hid_t did = H5I_INVALID_HID; + hid_t aid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + hid_t tid = H5I_INVALID_HID; + hid_t gid = H5I_INVALID_HID; if ((sid = H5Screate_simple(1, dims, NULL)) < 0) goto out; /* Create a dataset with an anonymous committed datatype as the first thing * h5repack sees */ - if((tid = H5Tcopy(H5T_STD_I16LE)) < 0) + if ((tid = H5Tcopy(H5T_STD_I16LE)) < 0) goto out; - if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; if ((did = H5Dcreate2(loc_id, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Tclose(tid) < 0) + if (H5Tclose(tid) < 0) goto out; /* Create an attribute on that dataset that uses a committed datatype in * a remote group */ - if((gid = H5Gcreate2(loc_id, "M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((gid = H5Gcreate2(loc_id, "M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Gclose(gid) < 0) + if (H5Gclose(gid) < 0) goto out; - if((gid = H5Gcreate2(loc_id, "M/M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((gid = H5Gcreate2(loc_id, "M/M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Gclose(gid) < 0) + if (H5Gclose(gid) < 0) goto out; - if((tid = H5Tcopy(H5T_STD_I16BE)) < 0) + if ((tid = H5Tcopy(H5T_STD_I16BE)) < 0) goto out; - if(H5Tcommit2(loc_id, "/M/M/A", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Tcommit2(loc_id, "/M/M/A", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; - if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Aclose(aid) < 0) + if (H5Aclose(aid) < 0) goto out; - if(H5Tclose(tid) < 0) + if (H5Tclose(tid) < 0) goto out; - if(H5Dclose(did) < 0) + if (H5Dclose(did) < 0) goto out; /* Create a dataset in the remote group that uses a committed datatype in * the root group */ - if((tid = H5Tcopy(H5T_STD_I32LE)) < 0) + if ((tid = H5Tcopy(H5T_STD_I32LE)) < 0) goto out; - if(H5Tcommit2(loc_id, "N", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Tcommit2(loc_id, "N", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; - if((did = H5Dcreate2(loc_id, "M/M/B", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(loc_id, "M/M/B", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Tclose(tid) < 0) + if (H5Tclose(tid) < 0) goto out; /* Create an attribute on the remote dataset that uses an anonymous * committed datatype */ - if((tid = H5Tcopy(H5T_STD_I32BE)) < 0) + if ((tid = H5Tcopy(H5T_STD_I32BE)) < 0) goto out; - if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0) + if (H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0) goto out; - if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Aclose(aid) < 0) + if (H5Aclose(aid) < 0) goto out; /* Create another attribute that uses the same anonymous datatype */ - if((aid = H5Acreate2(did, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((aid = H5Acreate2(did, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Aclose(aid) < 0) + if (H5Aclose(aid) < 0) goto out; - if(H5Tclose(tid) < 0) + if (H5Tclose(tid) < 0) goto out; - if(H5Dclose(did) < 0) + if (H5Dclose(did) < 0) goto out; /* Create a dataset in the root group that uses the committed datatype in * the root group */ - if((tid = H5Topen2(loc_id, "N", H5P_DEFAULT)) < 0) + if ((tid = H5Topen2(loc_id, "N", H5P_DEFAULT)) < 0) goto out; - if((did = H5Dcreate2(loc_id, "O", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((did = H5Dcreate2(loc_id, "O", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Dclose(did) < 0) + if (H5Dclose(did) < 0) goto out; /* Create 2 attributes on the committed datatype that use that datatype */ - if((aid = H5Acreate2(tid, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((aid = H5Acreate2(tid, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Aclose(aid) < 0) + if (H5Aclose(aid) < 0) goto out; - if((aid = H5Acreate2(tid, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((aid = H5Acreate2(tid, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) goto out; - if(H5Aclose(aid) < 0) + if (H5Aclose(aid) < 0) goto out; - if(H5Tclose(tid) < 0) + if (H5Tclose(tid) < 0) goto out; /* Close */ @@ -6150,7 +6128,8 @@ out: H5Sclose(sid); H5Dclose(did); H5Gclose(gid); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } /* end make_named_dtype() */ @@ -6167,49 +6146,46 @@ out: * * Programmer: Jonathan Kim (March 23, 2010) *------------------------------------------------------------------------*/ -static herr_t add_attr_with_objref(hid_t file_id, hid_t obj_id) +static herr_t +add_attr_with_objref(hid_t file_id, hid_t obj_id) { int ret = SUCCEED; int status; /* attr obj ref */ - hsize_t dim_attr_objref[1]={3}; + hsize_t dim_attr_objref[1] = {3}; hobj_ref_t data_attr_objref[3]; /* -------------------------------- * add attribute with obj ref type */ /* ref to dset */ - status = H5Rcreate(&data_attr_objref[0],file_id,NAME_OBJ_DS1,H5R_OBJECT,(hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&data_attr_objref[0], file_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* ref to group */ - status = H5Rcreate(&data_attr_objref[1],file_id,NAME_OBJ_GRP,H5R_OBJECT,(hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&data_attr_objref[1], file_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* ref to datatype */ - status = H5Rcreate(&data_attr_objref[2],file_id,NAME_OBJ_NDTYPE,H5R_OBJECT,(hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&data_attr_objref[2], file_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* create attr with obj ref type */ - status = make_attr(obj_id,1,dim_attr_objref,"Attr_OBJREF",H5T_STD_REF_OBJ,data_attr_objref); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__); + status = make_attr(obj_id, 1, dim_attr_objref, "Attr_OBJREF", H5T_STD_REF_OBJ, data_attr_objref); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> make_attr failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6217,7 +6193,6 @@ static herr_t add_attr_with_objref(hid_t file_id, hid_t obj_id) out: return ret; - } /*------------------------------------------------------------------------- @@ -6232,63 +6207,58 @@ out: * * Programmer: Jonathan Kim (March 23, 2010) *------------------------------------------------------------------------*/ -static herr_t add_attr_with_regref(hid_t file_id, hid_t obj_id) +static herr_t +add_attr_with_regref(hid_t file_id, hid_t obj_id) { int ret = SUCCEED; int status; /* attr region ref */ - hid_t sid_regrefed_dset=0; - hsize_t dim_regrefed_dset[2]={3,6}; - hsize_t coords_regrefed_dset[3][2] = {{0,1},{1,2},{2,3}}; - hsize_t dim_attr_regref[1]= {1}; /* dim of */ + hid_t sid_regrefed_dset = 0; + hsize_t dim_regrefed_dset[2] = {3, 6}; + hsize_t coords_regrefed_dset[3][2] = {{0, 1}, {1, 2}, {2, 3}}; + hsize_t dim_attr_regref[1] = {1}; /* dim of */ hdset_reg_ref_t data_attr_regref[1]; - /* ----------------------------------- * add attribute with region ref type */ - sid_regrefed_dset = H5Screate_simple (2, dim_regrefed_dset, NULL); - if (sid_regrefed_dset < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + sid_regrefed_dset = H5Screate_simple(2, dim_regrefed_dset, NULL); + if (sid_regrefed_dset < 0) { + HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* select elements space for reference */ - status = H5Sselect_elements (sid_regrefed_dset, H5S_SELECT_SET, (size_t)3, coords_regrefed_dset[0]); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); + status = H5Sselect_elements(sid_regrefed_dset, H5S_SELECT_SET, (size_t)3, coords_regrefed_dset[0]); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* create region reference from elements space */ - status = H5Rcreate (&data_attr_regref[0], file_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_regrefed_dset); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&data_attr_regref[0], file_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_regrefed_dset); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* create attr with region ref type */ - status = make_attr(obj_id,1,dim_attr_regref,"Attr_REGREF",H5T_STD_REF_DSETREG,data_attr_regref); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__); + status = make_attr(obj_id, 1, dim_attr_regref, "Attr_REGREF", H5T_STD_REF_DSETREG, data_attr_regref); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> make_attr failed.\n", __func__, __LINE__); ret = FAIL; goto out; } out: if (sid_regrefed_dset > 0) - H5Sclose (sid_regrefed_dset); + H5Sclose(sid_regrefed_dset); return ret; - } /*------------------------------------------------------------------------- @@ -6302,45 +6272,43 @@ out: * * Programmer: Jonathan Kim (March 23, 2010) *------------------------------------------------------------------------*/ -static herr_t gen_refered_objs(hid_t loc_id) +static herr_t +gen_refered_objs(hid_t loc_id) { - int status; + int status; herr_t ret = SUCCEED; /* objects (dset, group, datatype) */ - hid_t sid=0, did1=0, gid=0, tid=0; - hsize_t dims1[1]={3}; - int data[3] = {10,20,30}; + hid_t sid = 0, did1 = 0, gid = 0, tid = 0; + hsize_t dims1[1] = {3}; + int data[3] = {10, 20, 30}; /* Dset2 */ - hid_t sid2=0, did2=0; - hsize_t dims2[2] = {3,16}; - char data2[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"}; + hid_t sid2 = 0, did2 = 0; + hsize_t dims2[2] = {3, 16}; + char data2[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"}; /*----------------------- * add short dataset * (define NAME_OBJ_DS1) */ sid = H5Screate_simple(1, dims1, NULL); - if (sid < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + if (sid < 0) { + HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - did1 = H5Dcreate2 (loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (did1 < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); + did1 = H5Dcreate2(loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (did1 < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __func__, __LINE__); ret = FAIL; goto out; } status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6349,10 +6317,9 @@ static herr_t gen_refered_objs(hid_t loc_id) * add group * (define NAME_OBJ_GRP) */ - gid = H5Gcreate2 (loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (gid < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); + gid = H5Gcreate2(loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid < 0) { + HDfprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6361,62 +6328,56 @@ static herr_t gen_refered_objs(hid_t loc_id) * add named datatype * (define NAME_OBJ_NDTYPE) */ - tid = H5Tcopy(H5T_NATIVE_INT); - status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__); + tid = H5Tcopy(H5T_NATIVE_INT); + status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", __func__, __LINE__); ret = FAIL; goto out; - } - + } - /*-------------------------- - * create long dataset - * (define NAME_OBJ_DS2) - */ - sid2 = H5Screate_simple (2, dims2, NULL); - if (sid2 < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + /*-------------------------- + * create long dataset + * (define NAME_OBJ_DS2) + */ + sid2 = H5Screate_simple(2, dims2, NULL); + if (sid2 < 0) { + HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - /* create normal dataset which is refered */ - did2 = H5Dcreate2 (loc_id, NAME_OBJ_DS2, H5T_STD_I8LE, sid2, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); - if (did2 < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); + /* create normal dataset which is referred */ + did2 = H5Dcreate2(loc_id, NAME_OBJ_DS2, H5T_STD_I8LE, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (did2 < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* write values to dataset */ - status = H5Dwrite (did2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + status = H5Dwrite(did2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } out: - if(did1 > 0) + if (did1 > 0) H5Dclose(did1); - if(gid > 0) + if (gid > 0) H5Gclose(gid); - if(tid > 0) + if (tid > 0) H5Tclose(tid); - if(sid > 0) + if (sid > 0) H5Sclose(sid); - if(did2 > 0) + if (did2 > 0) H5Dclose(did2); - if(sid2 > 0) + if (sid2 > 0) H5Sclose(sid2); return ret; - } /*------------------------------------------------------------------------- @@ -6426,21 +6387,22 @@ out: * Generate object references to objects (dataset,group and named datatype) * * Note: - * copied from h5copygentest.c and upate to create named datatype + * copied from h5copygentest.c and update to create named datatype * * Programmer: Jonathan Kim (March 18, 2010) *------------------------------------------------------------------------*/ -static herr_t gen_obj_ref(hid_t loc_id) +static herr_t +gen_obj_ref(hid_t loc_id) { - int status; + int status; herr_t ret = SUCCEED; - hid_t sid=0, oid=0; - hsize_t dims_dset_objref[1]={3}; + hid_t sid = 0, oid = 0; + hsize_t dims_dset_objref[1] = {3}; /* attr with int type */ - hsize_t dim_attr_int[1]={2}; - int data_attr_int[2] = {10,20}; + hsize_t dim_attr_int[1] = {2}; + int data_attr_int[2] = {10, 20}; /* write buffer for obj reference */ hobj_ref_t objref_buf[3]; @@ -6450,28 +6412,25 @@ static herr_t gen_obj_ref(hid_t loc_id) * Passing -1 as reference is an object.*/ /* obj ref to dataset */ - status = H5Rcreate (&objref_buf[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&objref_buf[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* obj ref to group */ - status = H5Rcreate (&objref_buf[1], loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&objref_buf[1], loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* obj ref to named-datatype */ - status = H5Rcreate (&objref_buf[2], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&objref_buf[2], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6479,62 +6438,56 @@ static herr_t gen_obj_ref(hid_t loc_id) /*--------------------------------------------------------- * create dataset contain references */ - sid = H5Screate_simple (1, dims_dset_objref, NULL); - if (sid < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + sid = H5Screate_simple(1, dims_dset_objref, NULL); + if (sid < 0) { + HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); - if (oid < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); + oid = H5Dcreate2(loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (oid < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __func__, __LINE__); ret = FAIL; goto out; } status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, objref_buf); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* add attribute with int type */ - if (make_attr(oid,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0) + if (make_attr(oid, 1, dim_attr_int, "integer", H5T_NATIVE_INT, data_attr_int) < 0) goto out; /* add attribute with obj ref */ status = add_attr_with_objref(loc_id, oid); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* add attribute with region ref */ status = add_attr_with_regref(loc_id, oid); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", __func__, __LINE__); ret = FAIL; goto out; } out: - if(oid > 0) + if (oid > 0) H5Dclose(oid); - if(sid > 0) + if (sid > 0) H5Sclose(sid); return ret; } - /*------------------------------------------------------------------------- * Function: gen_region_ref * @@ -6545,168 +6498,158 @@ out: * * Programmer: Jonathan Kim (March 18, 2010) *------------------------------------------------------------------------*/ -static herr_t gen_region_ref(hid_t loc_id) +static herr_t +gen_region_ref(hid_t loc_id) { - int status; + int status; herr_t ret = SUCCEED; /* target dataset */ - hid_t sid_trg=0; - hsize_t dims_trg[2] = {3,16}; + hid_t sid_trg = 0; + hsize_t dims_trg[2] = {3, 16}; /* dset with region ref type */ - hid_t sid_ref=0, oid_ref=0; + hid_t sid_ref = 0, oid_ref = 0; /* region ref to target dataset */ - hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} }; - hdset_reg_ref_t rr_data[2]; - hsize_t start[2] = {0,0}; - hsize_t stride[2] = {2,11}; - hsize_t count[2] = {2,2}; - hsize_t block[2] = {1,3}; - hsize_t dims1[1] = {2}; + hsize_t coords[4][2] = {{0, 1}, {2, 11}, {1, 0}, {2, 4}}; + hdset_reg_ref_t rr_data[2]; + hsize_t start[2] = {0, 0}; + hsize_t stride[2] = {2, 11}; + hsize_t count[2] = {2, 2}; + hsize_t block[2] = {1, 3}; + hsize_t dims1[1] = {2}; /* attr with int type */ - hsize_t dim_attr_int[1]={2}; - int data_attr_int[2] = {10,20}; + hsize_t dim_attr_int[1] = {2}; + int data_attr_int[2] = {10, 20}; - sid_trg = H5Screate_simple (2, dims_trg, NULL); - if (sid_trg < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + sid_trg = H5Screate_simple(2, dims_trg, NULL); + if (sid_trg < 0) { + HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* select elements space for reference */ - status = H5Sselect_elements (sid_trg, H5S_SELECT_SET, (size_t)4, coords[0]); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); + status = H5Sselect_elements(sid_trg, H5S_SELECT_SET, (size_t)4, coords[0]); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* create region reference from elements space */ - status = H5Rcreate (&rr_data[0], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&rr_data[0], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* select hyperslab space for reference */ - status = H5Sselect_hyperslab (sid_trg, H5S_SELECT_SET, start, stride, count, block); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", FUNC, __LINE__); + status = H5Sselect_hyperslab(sid_trg, H5S_SELECT_SET, start, stride, count, block); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* create region reference from hyperslab space */ - status = H5Rcreate (&rr_data[1], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&rr_data[1], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* Create dataspace. */ - sid_ref = H5Screate_simple (1, dims1, NULL); - if (sid_ref < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + sid_ref = H5Screate_simple(1, dims1, NULL); + if (sid_ref < 0) { + HDfprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* create region reference dataset */ - oid_ref = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid_ref, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); - if (oid_ref < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); + oid_ref = + H5Dcreate2(loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid_ref, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (oid_ref < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* write data as region references */ - status = H5Dwrite (oid_ref, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + status = H5Dwrite(oid_ref, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* add attribute with int type */ - if (make_attr(oid_ref,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0) + if (make_attr(oid_ref, 1, dim_attr_int, "integer", H5T_NATIVE_INT, data_attr_int) < 0) goto out; /* add attribute with obj ref */ status = add_attr_with_objref(loc_id, oid_ref); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* add attribute with region ref */ status = add_attr_with_regref(loc_id, oid_ref); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", __func__, __LINE__); ret = FAIL; goto out; } out: if (oid_ref > 0) - H5Dclose (oid_ref); + H5Dclose(oid_ref); if (sid_ref > 0) - H5Sclose (sid_ref); + H5Sclose(sid_ref); if (sid_trg > 0) - H5Sclose (sid_trg); + H5Sclose(sid_trg); return ret; } /*------------------------------------------------------------------------- -* Function: make_references -* -* Purpose: create a file with obj and region references -* -* Programmer: Jonathan Kim (March 18, 2010) -*------------------------------------------------------------------------- -*/ -static herr_t make_references(hid_t loc_id) + * Function: make_references + * + * Purpose: create a file with obj and region references + * + * Programmer: Jonathan Kim (March 18, 2010) + *------------------------------------------------------------------------- + */ +static herr_t +make_references(hid_t loc_id) { herr_t ret = SUCCEED; herr_t status; /* add target objects */ status = gen_refered_objs(loc_id); - if (status == FAIL) - { + if (status == FAIL) { HDfprintf(stderr, "Failed to generate referenced object.\n"); ret = FAIL; } /* add object reference */ status = gen_obj_ref(loc_id); - if (status == FAIL) - { + if (status == FAIL) { HDfprintf(stderr, "Failed to generate object reference.\n"); ret = FAIL; } /* add region reference */ status = gen_region_ref(loc_id); - if (status == FAIL) - { + if (status == FAIL) { HDfprintf(stderr, "Failed to generate region reference.\n"); ret = FAIL; } @@ -6715,110 +6658,107 @@ static herr_t make_references(hid_t loc_id) } /*------------------------------------------------------------------------- -* Function: make_complex_attr_references -* -* Purpose: -* create a file with : -* 1. obj ref in attribute of compound type -* 2. region ref in attribute of compound type -* 3. obj ref in attribute of vlen type -* 4. region ref in attribute of vlen type -* -* Programmer: Jonathan (March 25, 2010) -*------------------------------------------------------------------------- -*/ + * Function: make_complex_attr_references + * + * Purpose: + * create a file with : + * 1. obj ref in attribute of compound type + * 2. region ref in attribute of compound type + * 3. obj ref in attribute of vlen type + * 4. region ref in attribute of vlen type + * + * Programmer: Jonathan (March 25, 2010) + *------------------------------------------------------------------------- + */ /* obj dset */ #define RANK_OBJ 2 #define DIM0_OBJ 6 #define DIM1_OBJ 10 /* container dset */ #define RANK_DSET 1 -#define DIM_DSET 4 +#define DIM_DSET 4 /* 1. obj references in compound attr */ #define RANK_COMP_OBJREF 1 -#define DIM_COMP_OBJREF 3 /* for dataset, group, datatype */ +#define DIM_COMP_OBJREF 3 /* for dataset, group, datatype */ /* 2. region references in compound attr */ #define RANK_COMP_REGREF 1 -#define DIM_COMP_REGREF 1 /* for element region */ +#define DIM_COMP_REGREF 1 /* for element region */ /* 3. obj references in vlen attr */ #define RANK_VLEN_OBJREF 1 -#define DIM_VLEN_OBJREF 3 /* for dataset, group, datatype */ -#define LEN0_VLEN_OBJREF 1 /* dataset */ -#define LEN1_VLEN_OBJREF 1 /* group */ -#define LEN2_VLEN_OBJREF 1 /* datatype */ +#define DIM_VLEN_OBJREF 3 /* for dataset, group, datatype */ +#define LEN0_VLEN_OBJREF 1 /* dataset */ +#define LEN1_VLEN_OBJREF 1 /* group */ +#define LEN2_VLEN_OBJREF 1 /* datatype */ /* 4. region references in vlen attr */ #define RANK_VLEN_REGREF 1 -#define DIM_VLEN_REGREF 1 /* for element region */ -#define LEN0_VLEN_REGREF 1 /* element region */ +#define DIM_VLEN_REGREF 1 /* for element region */ +#define LEN0_VLEN_REGREF 1 /* element region */ -static herr_t make_complex_attr_references(hid_t loc_id) +static herr_t +make_complex_attr_references(hid_t loc_id) { herr_t ret = SUCCEED; herr_t status; /* * for objects */ - hid_t objgid=0, objdid=0, objtid=0, objsid=0; - hsize_t obj_dims[RANK_OBJ] = {DIM0_OBJ, DIM1_OBJ}; - int obj_data[DIM0_OBJ][DIM1_OBJ]= - {{ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9}, - {10,11,12,13,14,15,16,17,18,19}, - {20,21,22,23,24,25,26,27,28,29}, - {30,31,32,33,34,35,36,37,38,39}, - {40,41,42,43,44,45,46,47,48,49}, - {50,51,52,53,54,55,56,57,58,59}}; + hid_t objgid = 0, objdid = 0, objtid = 0, objsid = 0; + hsize_t obj_dims[RANK_OBJ] = {DIM0_OBJ, DIM1_OBJ}; + int obj_data[DIM0_OBJ][DIM1_OBJ] = { + {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}, {10, 11, 12, 13, 14, 15, 16, 17, 18, 19}, + {20, 21, 22, 23, 24, 25, 26, 27, 28, 29}, {30, 31, 32, 33, 34, 35, 36, 37, 38, 39}, + {40, 41, 42, 43, 44, 45, 46, 47, 48, 49}, {50, 51, 52, 53, 54, 55, 56, 57, 58, 59}}; /* * group main */ - hid_t main_gid=0; + hid_t main_gid = 0; /* * dataset which the attribute will be attached to */ hsize_t main_dset_dims[RANK_DSET] = {DIM_DSET}; - hid_t main_sid=0, main_did=0; + hid_t main_sid = 0, main_did = 0; /* * 1. obj references in compound attr */ - hid_t comp_objref_tid=0, comp_objref_aid=0; + hid_t comp_objref_tid = 0, comp_objref_aid = 0; typedef struct comp_objref_t { hobj_ref_t val_objref; - int val_int; + int val_int; } comp_objref_t; comp_objref_t comp_objref_data[DIM_COMP_OBJREF]; - hid_t comp_objref_attr_sid=0; - hsize_t comp_objref_dim[RANK_COMP_OBJREF] = {DIM_COMP_OBJREF}; + hid_t comp_objref_attr_sid = 0; + hsize_t comp_objref_dim[RANK_COMP_OBJREF] = {DIM_COMP_OBJREF}; /* * 2. region references in compound attr */ - hid_t comp_regref_tid=0, comp_regref_aid=0; + hid_t comp_regref_tid = 0, comp_regref_aid = 0; typedef struct comp_regref_t { hdset_reg_ref_t val_regref; - int val_int; + int val_int; } comp_regref_t; comp_regref_t comp_regref_data[DIM_COMP_REGREF]; - hid_t comp_regref_attr_sid=0; - hsize_t comp_regref_dim[RANK_COMP_REGREF] = {DIM_COMP_REGREF}; - hsize_t coords[4][2] = { {0,1}, {2,3}, {3,4}, {4,5} }; + hid_t comp_regref_attr_sid = 0; + hsize_t comp_regref_dim[RANK_COMP_REGREF] = {DIM_COMP_REGREF}; + hsize_t coords[4][2] = {{0, 1}, {2, 3}, {3, 4}, {4, 5}}; /* * 3. obj references in vlen attr */ - hid_t vlen_objref_attr_tid=0, vlen_objref_attr_sid=0; - hid_t vlen_objref_attr_id=0; - hvl_t vlen_objref_data[DIM_VLEN_OBJREF]; + hid_t vlen_objref_attr_tid = 0, vlen_objref_attr_sid = 0; + hid_t vlen_objref_attr_id = 0; + hvl_t vlen_objref_data[DIM_VLEN_OBJREF]; hsize_t vlen_objref_dims[RANK_VLEN_OBJREF] = {DIM_VLEN_OBJREF}; /* * 4. region references in vlen attr */ - hid_t vlen_regref_attr_tid=0, vlen_regref_attr_sid=0; - hid_t vlen_regref_attr_id=0; - hvl_t vlen_regref_data[DIM_VLEN_REGREF]; + hid_t vlen_regref_attr_tid = 0, vlen_regref_attr_sid = 0; + hid_t vlen_regref_attr_id = 0; + hvl_t vlen_regref_data[DIM_VLEN_REGREF]; hsize_t vlen_regref_dim[RANK_VLEN_REGREF] = {DIM_VLEN_REGREF}; - /* --------------------------------------- * create objects which to be referenced */ @@ -6829,9 +6769,8 @@ static herr_t make_complex_attr_references(hid_t loc_id) objsid = H5Screate_simple(RANK_OBJ, obj_dims, NULL); objdid = H5Dcreate2(loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, objsid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(objdid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6839,22 +6778,19 @@ static herr_t make_complex_attr_references(hid_t loc_id) /* object3 named datatype */ objtid = H5Tcopy(H5T_NATIVE_INT); status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, objtid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - /* --------------------------------------------- * Put testing objs in this group * create group contain dataset with attribute and the attribute has * compound type which contain obj and region reference */ main_gid = H5Gcreate2(loc_id, "group_main", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (main_gid < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); + if (main_gid < 0) { + HDfprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6864,12 +6800,12 @@ static herr_t make_complex_attr_references(hid_t loc_id) */ main_sid = H5Screate_simple(RANK_DSET, main_dset_dims, NULL); - main_did = H5Dcreate2(main_gid, "dset_main", H5T_NATIVE_INT, main_sid, H5P_DEFAULT,H5P_DEFAULT, H5P_DEFAULT); + main_did = + H5Dcreate2(main_gid, "dset_main", H5T_NATIVE_INT, main_sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); status = H5Dwrite(main_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6881,7 +6817,7 @@ static herr_t make_complex_attr_references(hid_t loc_id) /* * create compound type for attribute */ - comp_objref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_objref_t)); + comp_objref_tid = H5Tcreate(H5T_COMPOUND, sizeof(comp_objref_t)); H5Tinsert(comp_objref_tid, "value_objref", HOFFSET(comp_objref_t, val_objref), H5T_STD_REF_OBJ); H5Tinsert(comp_objref_tid, "value_int", HOFFSET(comp_objref_t, val_int), H5T_NATIVE_INT); @@ -6889,31 +6825,28 @@ static herr_t make_complex_attr_references(hid_t loc_id) /* * Create the object references into compound type */ - /* references to dataset */ - status = H5Rcreate (&(comp_objref_data[0].val_objref), loc_id, NAME_OBJ_DS1, H5R_OBJECT,(hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + /* references to dataset */ + status = H5Rcreate(&(comp_objref_data[0].val_objref), loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } comp_objref_data[0].val_int = 0; - /* references to group */ - status = H5Rcreate (&(comp_objref_data[1].val_objref), loc_id, NAME_OBJ_GRP, H5R_OBJECT,(hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + /* references to group */ + status = H5Rcreate(&(comp_objref_data[1].val_objref), loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } comp_objref_data[1].val_int = 10; - /* references to datatype */ - status = H5Rcreate (&(comp_objref_data[2].val_objref), loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT,(hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + /* references to datatype */ + status = H5Rcreate(&(comp_objref_data[2].val_objref), loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6922,12 +6855,12 @@ static herr_t make_complex_attr_references(hid_t loc_id) /* * create attribute and write the object ref */ - comp_objref_attr_sid = H5Screate_simple (RANK_COMP_OBJREF, comp_objref_dim, NULL); - comp_objref_aid = H5Acreate2 (main_did, "Comp_OBJREF", comp_objref_tid, comp_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); - status = H5Awrite (comp_objref_aid, comp_objref_tid, comp_objref_data); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); + comp_objref_attr_sid = H5Screate_simple(RANK_COMP_OBJREF, comp_objref_dim, NULL); + comp_objref_aid = + H5Acreate2(main_did, "Comp_OBJREF", comp_objref_tid, comp_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite(comp_objref_aid, comp_objref_tid, comp_objref_data); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Awrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6938,7 +6871,7 @@ static herr_t make_complex_attr_references(hid_t loc_id) /* * create compound type for attribute */ - comp_regref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_regref_t)); + comp_regref_tid = H5Tcreate(H5T_COMPOUND, sizeof(comp_regref_t)); H5Tinsert(comp_regref_tid, "value_regref", HOFFSET(comp_regref_t, val_regref), H5T_STD_REF_DSETREG); H5Tinsert(comp_regref_tid, "value_int", HOFFSET(comp_regref_t, val_int), H5T_NATIVE_INT); @@ -6946,17 +6879,15 @@ static herr_t make_complex_attr_references(hid_t loc_id) /* * create the region reference */ - status = H5Sselect_elements (objsid, H5S_SELECT_SET, (size_t)4, coords[0]); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); + status = H5Sselect_elements(objsid, H5S_SELECT_SET, (size_t)4, coords[0]); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - status = H5Rcreate (&(comp_regref_data[0].val_regref), loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&(comp_regref_data[0].val_regref), loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -6965,81 +6896,79 @@ static herr_t make_complex_attr_references(hid_t loc_id) /* * create attribute and write the region ref */ - comp_regref_attr_sid = H5Screate_simple (RANK_COMP_REGREF, comp_regref_dim, NULL); - comp_regref_aid = H5Acreate2 (main_did, "Comp_REGREF", comp_regref_tid, comp_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); - status = H5Awrite (comp_regref_aid, comp_regref_tid, comp_regref_data); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); + comp_regref_attr_sid = H5Screate_simple(RANK_COMP_REGREF, comp_regref_dim, NULL); + comp_regref_aid = + H5Acreate2(main_did, "Comp_REGREF", comp_regref_tid, comp_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite(comp_regref_aid, comp_regref_tid, comp_regref_data); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Awrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - /*------------------------------------------------------------------- * 3. create obj references in attribute of vlen type */ /* * prepare vlen data */ - vlen_objref_data[0].len = LEN0_VLEN_OBJREF; - vlen_objref_data[0].p = HDmalloc (vlen_objref_data[0].len * sizeof(hobj_ref_t)); - vlen_objref_data[1].len = LEN1_VLEN_OBJREF; - vlen_objref_data[1].p = HDmalloc (vlen_objref_data[1].len * sizeof(hobj_ref_t)); - vlen_objref_data[2].len = LEN2_VLEN_OBJREF; - vlen_objref_data[2].p = HDmalloc (vlen_objref_data[2].len * sizeof(hobj_ref_t)); - - /* - * create obj references - */ - /* reference to dataset */ - status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + vlen_objref_data[0].len = LEN0_VLEN_OBJREF; + vlen_objref_data[0].p = HDmalloc(vlen_objref_data[0].len * sizeof(hobj_ref_t)); + vlen_objref_data[1].len = LEN1_VLEN_OBJREF; + vlen_objref_data[1].p = HDmalloc(vlen_objref_data[1].len * sizeof(hobj_ref_t)); + vlen_objref_data[2].len = LEN2_VLEN_OBJREF; + vlen_objref_data[2].p = HDmalloc(vlen_objref_data[2].len * sizeof(hobj_ref_t)); + + /* + * create obj references + */ + /* reference to dataset */ + status = + H5Rcreate(&((hobj_ref_t *)vlen_objref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - /* reference to group */ - status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[1].p)[0], loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + /* reference to group */ + status = + H5Rcreate(&((hobj_ref_t *)vlen_objref_data[1].p)[0], loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - /* reference to datatype */ - status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[2].p)[0], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + /* reference to datatype */ + status = + H5Rcreate(&((hobj_ref_t *)vlen_objref_data[2].p)[0], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - /* - * create vlen type with obj reference - */ - vlen_objref_attr_tid = H5Tvlen_create (H5T_STD_REF_OBJ); - vlen_objref_attr_sid = H5Screate_simple (RANK_VLEN_OBJREF, vlen_objref_dims, NULL); + /* + * create vlen type with obj reference + */ + vlen_objref_attr_tid = H5Tvlen_create(H5T_STD_REF_OBJ); + vlen_objref_attr_sid = H5Screate_simple(RANK_VLEN_OBJREF, vlen_objref_dims, NULL); - /* + /* * create attribute and write the object reference */ - vlen_objref_attr_id = H5Acreate2(main_did, "Vlen_OBJREF", vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); - status = H5Awrite (vlen_objref_attr_id, vlen_objref_attr_tid, vlen_objref_data); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); + vlen_objref_attr_id = H5Acreate2(main_did, "Vlen_OBJREF", vlen_objref_attr_tid, vlen_objref_attr_sid, + H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite(vlen_objref_attr_id, vlen_objref_attr_tid, vlen_objref_data); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Awrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* close resource for vlen data */ - status = H5Dvlen_reclaim (vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, vlen_objref_data); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__); + status = H5Treclaim(vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, vlen_objref_data); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Treclaim failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -7052,22 +6981,21 @@ static herr_t make_complex_attr_references(hid_t loc_id) * prepare vlen data */ vlen_regref_data[0].len = LEN0_VLEN_REGREF; - vlen_regref_data[0].p = HDmalloc (vlen_regref_data[0].len * sizeof(hdset_reg_ref_t)); + vlen_regref_data[0].p = HDmalloc(vlen_regref_data[0].len * sizeof(hdset_reg_ref_t)); /* * create region reference */ status = H5Sselect_elements(objsid, H5S_SELECT_SET, (size_t)4, coords[0]); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", __func__, __LINE__); ret = FAIL; goto out; } - status = H5Rcreate (&((hdset_reg_ref_t*)vlen_regref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + status = H5Rcreate(&((hdset_reg_ref_t *)vlen_regref_data[0].p)[0], loc_id, NAME_OBJ_DS1, + H5R_DATASET_REGION, objsid); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", __func__, __LINE__); ret = FAIL; goto out; } @@ -7081,20 +7009,19 @@ static herr_t make_complex_attr_references(hid_t loc_id) /* * create attribute and write the region reference */ - vlen_regref_attr_id = H5Acreate2(main_did, "Vlen_REGREF", vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); - status = H5Awrite(vlen_regref_attr_id, vlen_regref_attr_tid, vlen_regref_data); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); + vlen_regref_attr_id = H5Acreate2(main_did, "Vlen_REGREF", vlen_regref_attr_tid, vlen_regref_attr_sid, + H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite(vlen_regref_attr_id, vlen_regref_attr_tid, vlen_regref_data); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Awrite failed.\n", __func__, __LINE__); ret = FAIL; goto out; } /* close resource for vlen data */ - status = H5Dvlen_reclaim (vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, vlen_regref_data); - if (status < 0) - { - HDfprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__); + status = H5Treclaim(vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, vlen_regref_data); + if (status < 0) { + HDfprintf(stderr, "Error: %s %d> H5Treclaim failed.\n", __func__, __LINE__); ret = FAIL; goto out; } diff --git a/tools/test/h5repack/testfiles/README b/tools/test/h5repack/testfiles/README index 4096dee..4cb66f4 100644 --- a/tools/test/h5repack/testfiles/README +++ b/tools/test/h5repack/testfiles/README @@ -1,5 +1,5 @@ h5repack_nested_8bit_enum_deflated.h5: h5repack_nested_8bit_enum.h5: - enuberated 8bit type nested in compount type. Original file provided + enuberated 8bit type nested in compound type. Original file provided by a user (HDFFV-8667) as a test file. Used h5copy to extract only the Compound type dataset. The non-deflated version is produced by h5repack. diff --git a/tools/test/h5repack/testfiles/attrregion.tattrreg.h5.ddl b/tools/test/h5repack/testfiles/attrregion.tattrreg.h5.ddl new file mode 100644 index 0000000..7cab02b --- /dev/null +++ b/tools/test/h5repack/testfiles/attrregion.tattrreg.h5.ddl @@ -0,0 +1,46 @@ +HDF5 "out-attrregion.tattrreg.h5" { +GROUP "/" { + DATASET "Dataset1" { + DATATYPE H5T_STD_I32LE + DATASPACE NULL + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 0 + OFFSET HADDR_UNDEF + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + ATTRIBUTE "Attribute1" { + DATATYPE H5T_REFERENCE { H5T_STD_REF_DSETREG } + DATASPACE SIMPLE { ( 4 ) / ( 4 ) } + } + } + DATASET "Dataset2" { + DATATYPE H5T_STD_U8BE + DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 100 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } +} +} diff --git a/tools/test/h5repack/testfiles/dataregion.tdatareg.h5.ddl b/tools/test/h5repack/testfiles/dataregion.tdatareg.h5.ddl new file mode 100644 index 0000000..bd31118 --- /dev/null +++ b/tools/test/h5repack/testfiles/dataregion.tdatareg.h5.ddl @@ -0,0 +1,42 @@ +HDF5 "out-dataregion.tdatareg.h5" { +GROUP "/" { + DATASET "Dataset1" { + DATATYPE H5T_REFERENCE { H5T_STD_REF_DSETREG } + DATASPACE SIMPLE { ( 4 ) / ( 4 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 48 + OFFSET 6244 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_UNDEFINED + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATASET "Dataset2" { + DATATYPE H5T_STD_U8BE + DATASPACE SIMPLE { ( 10, 10 ) / ( 10, 10 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 100 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_UNDEFINED + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } +} +} diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src-base.h5copy_extlinks_src.h5.ddl b/tools/test/h5repack/testfiles/h5copy_extlinks_src-base.h5copy_extlinks_src.h5.ddl new file mode 100644 index 0000000..ad8a320 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src-base.h5copy_extlinks_src.h5.ddl @@ -0,0 +1,28 @@ +HDF5 "out-h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5" { +GROUP "/" { + GROUP "group_ext" { + DATATYPE "extlink_datatype" H5T_STD_I32LE; + DATASET "extlink_dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + GROUP "extlink_grp" { + } + } +} +} diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst b/tools/test/h5repack/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst new file mode 100644 index 0000000..52f215d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst @@ -0,0 +1,26 @@ + +file1 file2 +--------------------------------------- + x x / + x x /group_ext + x x /group_ext/extlink_datatype + x x /group_ext/extlink_dset + x x /group_ext/extlink_grp + x x /group_ext/extlink_notyet1 + x x /group_ext/extlink_notyet2 + +group : </> and </> +0 differences found +group : </group_ext> and </group_ext> +0 differences found +Not comparable: </group_ext/extlink_datatype> is of type H5G_UDLINK and </group_ext/extlink_datatype> is of type H5G_TYPE +Not comparable: </group_ext/extlink_dset> is of type H5G_UDLINK and </group_ext/extlink_dset> is of type H5G_DATASET +Not comparable: </group_ext/extlink_grp> is of type H5G_UDLINK and </group_ext/extlink_grp> is of type H5G_GROUP +external link: </group_ext/extlink_notyet1> and </group_ext/extlink_notyet1> +0 differences found +external link: </group_ext/extlink_notyet2> and </group_ext/extlink_notyet2> +0 differences found +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects without details of differences. diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl b/tools/test/h5repack/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl new file mode 100644 index 0000000..ad8a320 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl @@ -0,0 +1,28 @@ +HDF5 "out-h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5" { +GROUP "/" { + GROUP "group_ext" { + DATATYPE "extlink_datatype" H5T_STD_I32LE; + DATASET "extlink_dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + GROUP "extlink_grp" { + } + } +} +} diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl b/tools/test/h5repack/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl new file mode 100644 index 0000000..b7d7bca --- /dev/null +++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl @@ -0,0 +1,6 @@ +HDF5 "out-h5copy_extlinks_src-prune.h5copy_extlinks_src.h5" { +GROUP "/" { + GROUP "group_ext" { + } +} +} diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src.h5 b/tools/test/h5repack/testfiles/h5copy_extlinks_src.h5 Binary files differnew file mode 100644 index 0000000..7b8621e --- /dev/null +++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src.h5 diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_trg.h5 b/tools/test/h5repack/testfiles/h5copy_extlinks_trg.h5 Binary files differnew file mode 100644 index 0000000..3a0242d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5copy_extlinks_trg.h5 diff --git a/tools/test/h5repack/testfiles/h5repack-help.txt b/tools/test/h5repack/testfiles/h5repack-help.txt index 2381865..bff70af 100644 --- a/tools/test/h5repack/testfiles/h5repack-help.txt +++ b/tools/test/h5repack/testfiles/h5repack-help.txt @@ -1,18 +1,51 @@ usage: h5repack [OPTIONS] file1 file2 file1 Input HDF5 File file2 Output HDF5 File + ERROR + --enable-error-stack Prints messages from the HDF5 error stack as they occur. + Optional value 2 also prints file open errors. OPTIONS -h, --help Print a usage message and exit - -v, --verbose Verbose mode, print object information + -v N, --verbose=N Verbose mode, print object information. + N - is an integer greater than 1, 2 displays read/write timing -V, --version Print version number and exit -n, --native Use a native HDF5 type when repacking - --enable-error-stack Prints messages from the HDF5 error stack as they occur + --src-vol-value Value (ID) of the VOL connector to use for opening the + input HDF5 file specified + --src-vol-name Name of the VOL connector to use for opening the input + HDF5 file specified + --src-vol-info VOL-specific info to pass to the VOL connector used for + opening the input HDF5 file specified + --dst-vol-value Value (ID) of the VOL connector to use for opening the + output HDF5 file specified + --dst-vol-name Name of the VOL connector to use for opening the output + HDF5 file specified + --dst-vol-info VOL-specific info to pass to the VOL connector used for + opening the output HDF5 file specified + --src-vfd-value Value (ID) of the VFL driver to use for opening the + input HDF5 file specified + --src-vfd-name Name of the VFL driver to use for opening the input + HDF5 file specified + --src-vfd-info VFD-specific info to pass to the VFL driver used for + opening the input HDF5 file specified + --dst-vfd-value Value (ID) of the VFL driver to use for opening the + output HDF5 file specified + --dst-vfd-name Name of the VFL driver to use for opening the output + HDF5 file specified + --dst-vfd-info VFD-specific info to pass to the VFL driver used for + opening the output HDF5 file specified -L, --latest Use latest version of file format - This option will take precedence over the -j and -k options - --low=BOUND The low bound for library release versions to use when creating - objects in the file (default is H5F_LIBVER_EARLIEST) - --high=BOUND The high bound for library release versions to use when creating - objects in the file (default is H5F_LIBVER_LATEST) + This option will take precedence over the options + --low and --high + --low=BOUND The low bound for library release versions to use + when creating objects in the file + (default is H5F_LIBVER_EARLIEST) + --high=BOUND The high bound for library release versions to use + when creating objects in the file + (default is H5F_LIBVER_LATEST) + --merge Follow external soft link recursively and merge data + --prune Do not follow external soft links and remove link + --merge --prune Follow external link, merge data and remove dangling link -c L1, --compact=L1 Maximum number of links in header messages -d L2, --indexed=L2 Minimum number of links in the indexed format -s S[:F], --ssize=S[:F] Shared object header message minimum size @@ -27,10 +60,14 @@ usage: h5repack [OPTIONS] file1 file2 -z Z, --sort_order=Z Sort groups and attributes by order Z -f FILT, --filter=FILT Filter type -l LAYT, --layout=LAYT Layout type - -S FS_STRATEGY, --fs_strategy=FS_STRATEGY File space management strategy for H5Pset_file_space_strategy - -P FS_PERSIST, --fs_persist=FS_PERSIST Persisting or not persisting free-space for H5Pset_file_space_strategy - -T FS_THRESHOLD, --fs_threshold=FS_THRESHOLD Free-space section threshold for H5Pset_file_space_strategy - -G FS_PAGESIZE, --fs_pagesize=FS_PAGESIZE File space page size for H5Pset_file_space_page_size + -S FS_STRATEGY, --fs_strategy=FS_STRATEGY File space management strategy for + H5Pset_file_space_strategy + -P FS_PERSIST, --fs_persist=FS_PERSIST Persisting or not persisting free- + space for H5Pset_file_space_strategy + -T FS_THRESHOLD, --fs_threshold=FS_THRESHOLD Free-space section threshold + for H5Pset_file_space_strategy + -G FS_PAGESIZE, --fs_pagesize=FS_PAGESIZE File space page size for + H5Pset_file_space_page_size M - is an integer greater than 1, size of dataset in bytes (default is 0) E - is a filename. @@ -38,41 +75,51 @@ usage: h5repack [OPTIONS] file1 file2 U - is a filename. T - is an integer A - is an integer greater than zero - Q - is the sort index type for the input file. It can be "name" or "creation_order" (default) - Z - is the sort order type for the input file. It can be "descending" or "ascending" (default) + Q - is the sort index type for the input file. It can be "name" or + "creation_order" (default) + Z - is the sort order type for the input file. It can be "descending" or + "ascending" (default) B - is the user block size, any value that is 512 or greater and is a power of 2 (1024 default) F - is the shared object header message type, any of <dspace|dtype|fill| pline|attr>. If F is not specified, S applies to all messages - BOUND is an integer indicating the library release versions to use when creating - objects in the file (see H5Pset_libver_bounds()): + BOUND is an integer indicating the library release versions to use when + creating objects in the file (see H5Pset_libver_bounds()): 0: This is H5F_LIBVER_EARLIEST in H5F_libver_t struct 1: This is H5F_LIBVER_V18 in H5F_libver_t struct 2: This is H5F_LIBVER_V110 in H5F_libver_t struct 3: This is H5F_LIBVER_V112 in H5F_libver_t struct - (H5F_LIBVER_LATEST is aliased to H5F_LIBVER_V112 for this release + 4: This is H5F_LIBVER_V114 in H5F_libver_t struct + (H5F_LIBVER_LATEST is aliased to H5F_LIBVER_V114 for this release FS_STRATEGY is a string indicating the file space strategy used: FSM_AGGR: - The mechanisms used in managing file space are free-space managers, aggregators and virtual file driver. + The mechanisms used in managing file space are free-space + managers, aggregators and virtual file driver. PAGE: - The mechanisms used in managing file space are free-space managers with embedded paged aggregation and virtual file driver. + The mechanisms used in managing file space are free-space + managers with embedded paged aggregation and virtual file driver. AGGR: - The mechanisms used in managing file space are aggregators and virtual file driver. + The mechanisms used in managing file space are aggregators and + virtual file driver. NONE: - The mechanisms used in managing file space are virtual file driver. - The default strategy when not set is FSM_AGGR without persisting free-space. + The mechanisms used in managing file space are virtual file + driver. + The default strategy when not set is FSM_AGGR without persisting free- + space. FS_PERSIST is 1 to persisting free-space or 0 to not persisting free-space. The default when not set is not persisting free-space. The value is ignored for AGGR and NONE strategies. - FS_THRESHOLD is the minimum size (in bytes) of free-space sections to be tracked by the library. + FS_THRESHOLD is the minimum size (in bytes) of free-space sections to be + tracked by the library. The default when not set is 1. The value is ignored for AGGR and NONE strategies. - FS_PAGESIZE is the size (in bytes) >=512 that is used by the library when the file space strategy PAGE is used. + FS_PAGESIZE is the size (in bytes) >=512 that is used by the library when + the file space strategy PAGE is used. The default when not set is 4096. FILT - is a string with the format: @@ -100,9 +147,10 @@ usage: h5repack [OPTIONS] file1 file2 NBIT (no parameter) SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type is either IN or DS - UD=<filter_number,filter_flag,cd_value_count,value_1[,value_2,...,value_N]> - required values for filter_number,filter_flag,cd_value_count,value_1 - optional values for value_2 to value_N + UD=<filter_number,filter_flag,cd_value_count,value1[,value2,...,valueN]> + Required values: filter_number, filter_flag, cd_value_count, value1 + Optional values: value2 to valueN + filter_flag: 1 is OPTIONAL or 0 is MANDATORY NONE (no parameter) LAYT - is a string with the format: @@ -139,12 +187,7 @@ Examples of use: 4) h5repack -L -c 10 -s 20:dtype file1 file2 Using latest file format with maximum compact group size of 10 and - and minimum shared datatype size of 20 - -5) h5repack --low=0 --high=1 file1 file2 - - Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via H5Pset_libver_bounds() when - creating the repacked file: file2 + minimum shared datatype size of 20 5) h5repack -f SHUF -f GZIP=1 file1 file2 @@ -154,3 +197,8 @@ Examples of use: Add bzip2 filter to all datasets +7) h5repack --low=0 --high=1 file1 file2 + + Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via + H5Pset_libver_bounds() when creating the repacked file, file2 + diff --git a/tools/test/h5repack/testfiles/h5repack_CVE-2018-14460.h5 b/tools/test/h5repack/testfiles/h5repack_CVE-2018-14460.h5 Binary files differnew file mode 100644 index 0000000..f4093b5 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_CVE-2018-14460.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_CVE-2018-17432.h5 b/tools/test/h5repack/testfiles/h5repack_CVE-2018-17432.h5 Binary files differnew file mode 100644 index 0000000..7a815ba --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_CVE-2018-17432.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_f32le.h5 b/tools/test/h5repack/testfiles/h5repack_f32le.h5 Binary files differnew file mode 100644 index 0000000..03a9b57 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat Binary files differnew file mode 100644 index 0000000..8378fc2 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 b/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 Binary files differnew file mode 100644 index 0000000..ca6c49d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 Binary files differnew file mode 100644 index 0000000..7d60566 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat new file mode 100644 index 0000000..f75ada5 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat @@ -0,0 +1 @@ +úÿÿÿûÿÿÿüÿÿÿýÿÿÿþÿÿÿÿÿÿÿ
\ No newline at end of file diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat Binary files differnew file mode 100644 index 0000000..1f8f3b6 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 Binary files differnew file mode 100644 index 0000000..ba4b534 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 Binary files differnew file mode 100644 index 0000000..2f32bd1 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat Binary files differnew file mode 100644 index 0000000..c6bfc64 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 Binary files differnew file mode 100644 index 0000000..f6cce59 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 Binary files differnew file mode 100644 index 0000000..7a61ef5 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat Binary files differnew file mode 100644 index 0000000..b505eb4 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 b/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 Binary files differnew file mode 100644 index 0000000..7c4b750 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst b/tools/test/h5repack/testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst index 4e69148..3d9f0c2 100644 --- a/tools/test/h5repack/testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst +++ b/tools/test/h5repack/testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst @@ -1,47 +1,50 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Dcreate2(): unable to create dataset + #000: (file name) line (number) in H5Dcreate2(): unable to synchronously create dataset major: Dataset - minor: Unable to initialize object - #001: (file name) line (number) in H5VL_dataset_create(): dataset create failed + minor: Unable to create file + #001: (file name) line (number) in H5D__create_api_common(): unable to create dataset + major: Dataset + minor: Unable to create file + #002: (file name) line (number) in H5VL_dataset_create(): dataset create failed major: Virtual Object Layer minor: Unable to create file - #002: (file name) line (number) in H5VL__dataset_create(): dataset create failed + #003: (file name) line (number) in H5VL__dataset_create(): dataset create failed major: Virtual Object Layer minor: Unable to create file - #003: (file name) line (number) in H5VL__native_dataset_create(): unable to create dataset + #004: (file name) line (number) in H5VL__native_dataset_create(): unable to create dataset major: Dataset minor: Unable to initialize object - #004: (file name) line (number) in H5D__create_named(): unable to create and link to dataset + #005: (file name) line (number) in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object - #005: (file name) line (number) in H5L_link_object(): unable to create new link to object + #006: (file name) line (number) in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object - #006: (file name) line (number) in H5L__create_real(): can't insert link + #007: (file name) line (number) in H5L__create_real(): can't insert link major: Links minor: Unable to insert object - #007: (file name) line (number) in H5G_traverse(): internal path traversal failed + #008: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #008: (file name) line (number) in H5G__traverse_real(): traversal operator failed + #009: (file name) line (number) in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #009: (file name) line (number) in H5L__link_cb(): unable to create object + #010: (file name) line (number) in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object - #010: (file name) line (number) in H5O_obj_create(): unable to open object + #011: (file name) line (number) in H5O_obj_create(): unable to open object major: Object header minor: Can't open object - #011: (file name) line (number) in H5O__dset_create(): unable to create dataset + #012: (file name) line (number) in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object - #012: (file name) line (number) in H5D__create(): unable to construct layout information + #013: (file name) line (number) in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object - #013: (file name) line (number) in H5D__chunk_construct(): dimensionality of chunks doesn't match the dataspace + #014: (file name) line (number) in H5D__chunk_construct(): dimensionality of chunks doesn't match the dataspace major: Dataset minor: Bad value H5tools-DIAG: Error detected in HDF5:tools (version (number)) thread (IDs): #000: (file name) line (number) in do_copy_objects(): H5Dcreate2 failed major: Failure in tools library - minor: error in function + minor: function info diff --git a/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl b/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl index 3ff2170..0992a0c 100644 --- a/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl +++ b/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl @@ -11,7 +11,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 11 6 } + PARAMS { 9 1 13 2 } } } FILLVALUE { @@ -33,7 +33,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 11 6 } + PARAMS { 9 1 13 2 } } } FILLVALUE { @@ -55,7 +55,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 11 6 } + PARAMS { 9 1 13 2 } } } FILLVALUE { @@ -77,7 +77,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 11 6 } + PARAMS { 9 1 13 2 } } } FILLVALUE { @@ -99,7 +99,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 11 6 } + PARAMS { 9 1 13 2 } } } FILLVALUE { @@ -121,7 +121,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 11 6 } + PARAMS { 9 1 13 2 } } } FILLVALUE { @@ -143,7 +143,7 @@ GROUP "/" { USER_DEFINED_FILTER { FILTER_ID 260 COMMENT dynlib4 - PARAMS { 9 1 11 6 } + PARAMS { 9 1 13 2 } } } FILLVALUE { diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be.h5 b/tools/test/h5repack/testfiles/h5repack_uint8be.h5 Binary files differnew file mode 100644 index 0000000..0e25211 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat Binary files differnew file mode 100644 index 0000000..f95b90a --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat new file mode 100644 index 0000000..011ab48 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat @@ -0,0 +1 @@ +@¿B½D»F¹H·JµL³N±P¯RT«V©X§Z¥\£^¡`Ÿbd›f™h—j•l“n‘prt‹v‰x‡z…|ƒ~
\ No newline at end of file diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat new file mode 100644 index 0000000..069b96d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat @@ -0,0 +1 @@ +€‚}„{†yˆwŠuŒsŽqo’m”k–i˜gšeœcža _¢]¤[¦Y¨WªU¬S®Q°O²M´K¶I¸GºE¼C¾A
\ No newline at end of file diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat new file mode 100644 index 0000000..240d8ca --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat @@ -0,0 +1 @@ +À?Â=Ä;Æ9È7Ê5Ì3Î1Ð/Ò-Ô+Ö)Ø'Ú%Ü#Þ!àâäæèêìîðò
ôö øúüþ
\ No newline at end of file diff --git a/tools/test/h5repack/testfiles/h5repack_uint8be_ex.h5 b/tools/test/h5repack/testfiles/h5repack_uint8be_ex.h5 Binary files differnew file mode 100644 index 0000000..8787188 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_uint8be_ex.h5 diff --git a/tools/test/h5repack/testfiles/textlink-base.textlink.h5.ddl b/tools/test/h5repack/testfiles/textlink-base.textlink.h5.ddl new file mode 100644 index 0000000..b87a17d --- /dev/null +++ b/tools/test/h5repack/testfiles/textlink-base.textlink.h5.ddl @@ -0,0 +1,12 @@ +HDF5 "out-textlink-base.textlink.h5" { +GROUP "/" { + EXTERNAL_LINK "extlink1" { + TARGETFILE "filename" + TARGETPATH "objname" + } + EXTERNAL_LINK "extlink2" { + TARGETFILE "anotherfile" + TARGETPATH "anotherobj" + } +} +} diff --git a/tools/test/h5repack/testfiles/textlink-merge.textlink.h5.tst b/tools/test/h5repack/testfiles/textlink-merge.textlink.h5.tst new file mode 100644 index 0000000..a7ff71d --- /dev/null +++ b/tools/test/h5repack/testfiles/textlink-merge.textlink.h5.tst @@ -0,0 +1,13 @@ + +file1 file2 +--------------------------------------- + x x / + x x /extlink1 + x x /extlink2 + +group : </> and </> +0 differences found +external link: </extlink1> and </extlink1> +0 differences found +external link: </extlink2> and </extlink2> +0 differences found diff --git a/tools/test/h5repack/testfiles/textlink-mergeprune.textlink.h5.ddl b/tools/test/h5repack/testfiles/textlink-mergeprune.textlink.h5.ddl new file mode 100644 index 0000000..7206ae9 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlink-mergeprune.textlink.h5.ddl @@ -0,0 +1,4 @@ +HDF5 "out-textlink-mergeprune.textlink.h5" { +GROUP "/" { +} +} diff --git a/tools/test/h5repack/testfiles/textlink-prune.textlink.h5.ddl b/tools/test/h5repack/testfiles/textlink-prune.textlink.h5.ddl new file mode 100644 index 0000000..83db344 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlink-prune.textlink.h5.ddl @@ -0,0 +1,4 @@ +HDF5 "out-textlink-prune.textlink.h5" { +GROUP "/" { +} +} diff --git a/tools/test/h5repack/testfiles/textlinkfar-base.textlinkfar.h5.ddl b/tools/test/h5repack/testfiles/textlinkfar-base.textlinkfar.h5.ddl new file mode 100644 index 0000000..a5eb497 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinkfar-base.textlinkfar.h5.ddl @@ -0,0 +1,116 @@ +HDF5 "out-textlinkfar-base.textlinkfar.h5" { +GROUP "/" { + EXTERNAL_LINK "src_file" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2848 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3136 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + EXTERNAL_LINK "elink_t1" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + HARDLINK "/" + } + } + EXTERNAL_LINK "elink_t2" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/ext_link4" + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3160 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" H5T_STD_I32LE; + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + } + } + } + } +} +} diff --git a/tools/test/h5repack/testfiles/textlinkfar-merge.textlinkfar.h5.tst b/tools/test/h5repack/testfiles/textlinkfar-merge.textlinkfar.h5.tst new file mode 100644 index 0000000..6673d39 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinkfar-merge.textlinkfar.h5.tst @@ -0,0 +1,20 @@ + +file1 file2 +--------------------------------------- + x x / + x x /src_file + x /src_file/ext2soft_link1 + x /src_file/ext2softdangle_link1 + x /src_file/ext_link1 + x /src_file/ext_link2 + x /src_file/ext_link3 + x /src_file/ext_link4 + x /src_file/ext_link5 + +group : </> and </> +0 differences found +Not comparable: </src_file> is of type H5G_UDLINK and </src_file> is of type H5G_GROUP +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects without details of differences. diff --git a/tools/test/h5repack/testfiles/textlinkfar-mergeprune.textlinkfar.h5.ddl b/tools/test/h5repack/testfiles/textlinkfar-mergeprune.textlinkfar.h5.ddl new file mode 100644 index 0000000..7ba3308 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinkfar-mergeprune.textlinkfar.h5.ddl @@ -0,0 +1,152 @@ +HDF5 "out-textlinkfar-mergeprune.textlinkfar.h5" { +GROUP "/" { + GROUP "src_file" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2848 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3136 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + EXTERNAL_LINK "elink_t1" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + HARDLINK "/dset1" + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + HARDLINK "/group" + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3160 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" H5T_STD_I32LE; + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + } + } + } + } + EXTERNAL_LINK "elink_t2" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/ext_link4" + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + HARDLINK "/dset" + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" HARDLINK "/type" + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + HARDLINK "/empty_group" + } + } + } +} +} diff --git a/tools/test/h5repack/testfiles/textlinkfar-prune.textlinkfar.h5.ddl b/tools/test/h5repack/testfiles/textlinkfar-prune.textlinkfar.h5.ddl new file mode 100644 index 0000000..30f8f1b --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinkfar-prune.textlinkfar.h5.ddl @@ -0,0 +1,4 @@ +HDF5 "out-textlinkfar-prune.textlinkfar.h5" { +GROUP "/" { +} +} diff --git a/tools/test/h5repack/testfiles/textlinksrc-base.textlinksrc.h5.ddl b/tools/test/h5repack/testfiles/textlinksrc-base.textlinksrc.h5.ddl new file mode 100644 index 0000000..9a9a9aa --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinksrc-base.textlinksrc.h5.ddl @@ -0,0 +1,150 @@ +HDF5 "out-textlinksrc-base.textlinksrc.h5" { +GROUP "/" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2848 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3136 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + EXTERNAL_LINK "elink_t1" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + HARDLINK "/dset1" + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + HARDLINK "/group" + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3160 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" H5T_STD_I32LE; + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + } + } + } + } + EXTERNAL_LINK "elink_t2" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/ext_link4" + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + HARDLINK "/dset" + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" HARDLINK "/type" + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + HARDLINK "/empty_group" + } + } +} +} diff --git a/tools/test/h5repack/testfiles/textlinksrc-merge.textlinksrc.h5.tst b/tools/test/h5repack/testfiles/textlinksrc-merge.textlinksrc.h5.tst new file mode 100644 index 0000000..d5a5902 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinksrc-merge.textlinksrc.h5.tst @@ -0,0 +1,32 @@ + +file1 file2 +--------------------------------------- + x x / + x x /ext2soft_link1 + x x /ext2softdangle_link1 + x x /ext_link1 + x /ext_link1/dset + x /ext_link1/elink_t1 + x /ext_link1/elink_t2 + x /ext_link1/subgroup + x /ext_link1/subgroup/link_to_group + x x /ext_link2 + x x /ext_link3 + x x /ext_link4 + x x /ext_link5 + +group : </> and </> +0 differences found +Not comparable: </ext2soft_link1> is of type H5G_UDLINK and </ext2soft_link1> is of type H5G_DATASET +external link: </ext2softdangle_link1> and </ext2softdangle_link1> +0 differences found +Not comparable: </ext_link1> is of type H5G_UDLINK and </ext_link1> is of type H5G_GROUP +Not comparable: </ext_link2> is of type H5G_UDLINK and </ext_link2> is of type H5G_DATASET +Not comparable: </ext_link3> is of type H5G_UDLINK and </ext_link3> is of type H5G_TYPE +external link: </ext_link4> and </ext_link4> +0 differences found +Not comparable: </ext_link5> is of type H5G_UDLINK and </ext_link5> is of type H5G_GROUP +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects without details of differences. diff --git a/tools/test/h5repack/testfiles/textlinksrc-mergeprune.textlinksrc.h5.ddl b/tools/test/h5repack/testfiles/textlinksrc-mergeprune.textlinksrc.h5.ddl new file mode 100644 index 0000000..5b3c740 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinksrc-mergeprune.textlinksrc.h5.ddl @@ -0,0 +1,187 @@ +HDF5 "out-textlinksrc-mergeprune.textlinksrc.h5" { +GROUP "/" { + DATASET "ext2soft_link1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + GROUP "ext_link1" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2080 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + EXTERNAL_LINK "elink_t1" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2848 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3136 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + EXTERNAL_LINK "elink_t1" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + HARDLINK "/" + } + } + EXTERNAL_LINK "elink_t2" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/ext_link4" + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3160 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" H5T_STD_I32LE; + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + } + } + } + } + EXTERNAL_LINK "elink_t2" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/ext_link4" + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/ext_link1" + } + } + } + DATASET "ext_link2" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2104 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATATYPE "ext_link3" H5T_STD_I32LE; + GROUP "ext_link5" { + } +} +} diff --git a/tools/test/h5repack/testfiles/textlinksrc-prune.textlinksrc.h5.ddl b/tools/test/h5repack/testfiles/textlinksrc-prune.textlinksrc.h5.ddl new file mode 100644 index 0000000..65d35ef --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinksrc-prune.textlinksrc.h5.ddl @@ -0,0 +1,4 @@ +HDF5 "out-textlinksrc-prune.textlinksrc.h5" { +GROUP "/" { +} +} diff --git a/tools/test/h5repack/testfiles/textlinktar-base.textlinktar.h5.ddl b/tools/test/h5repack/testfiles/textlinktar-base.textlinktar.h5.ddl new file mode 100644 index 0000000..3f02ff2 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinktar-base.textlinktar.h5.ddl @@ -0,0 +1,168 @@ +HDF5 "out-textlinktar-base.textlinktar.h5" { +GROUP "/" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + GROUP "empty_group" { + } + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2072 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + EXTERNAL_LINK "elink_t1" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2848 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3136 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + EXTERNAL_LINK "elink_t1" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + HARDLINK "/" + } + } + EXTERNAL_LINK "elink_t2" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/ext_link4" + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3160 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" H5T_STD_I32LE; + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + } + } + } + } + EXTERNAL_LINK "elink_t2" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/ext_link4" + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + DATATYPE "type" H5T_STD_I32LE; +} +} diff --git a/tools/test/h5repack/testfiles/textlinktar-merge.textlinktar.h5.tst b/tools/test/h5repack/testfiles/textlinktar-merge.textlinktar.h5.tst new file mode 100644 index 0000000..ccf4f7b --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinktar-merge.textlinktar.h5.tst @@ -0,0 +1,44 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset + x x /empty_group + x x /group + x x /group/dset + x x /group/elink_t1 + x /group/elink_t1/ext2soft_link1 + x /group/elink_t1/ext2softdangle_link1 + x /group/elink_t1/ext_link1 + x /group/elink_t1/ext_link2 + x /group/elink_t1/ext_link3 + x /group/elink_t1/ext_link4 + x /group/elink_t1/ext_link5 + x x /group/elink_t2 + x x /group/subgroup + x x /group/subgroup/link_to_group + x x /type + +group : </> and </> +0 differences found +dataset: </dset> and </dset> +0 differences found +group : </empty_group> and </empty_group> +0 differences found +group : </group> and </group> +0 differences found +dataset: </group/dset> and </group/dset> +0 differences found +Not comparable: </group/elink_t1> is of type H5G_UDLINK and </group/elink_t1> is of type H5G_GROUP +external link: </group/elink_t2> and </group/elink_t2> +0 differences found +group : </group/subgroup> and </group/subgroup> +0 differences found +group : </group/subgroup/link_to_group> and </group/subgroup/link_to_group> +0 differences found +datatype: </type> and </type> +0 differences found +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects without details of differences. diff --git a/tools/test/h5repack/testfiles/textlinktar-mergeprune.textlinktar.h5.ddl b/tools/test/h5repack/testfiles/textlinktar-mergeprune.textlinktar.h5.ddl new file mode 100644 index 0000000..c52e34d --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinktar-mergeprune.textlinktar.h5.ddl @@ -0,0 +1,200 @@ +HDF5 "out-textlinktar-mergeprune.textlinktar.h5" { +GROUP "/" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + GROUP "empty_group" { + } + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2072 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + GROUP "elink_t1" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2848 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3136 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + EXTERNAL_LINK "elink_t1" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/" + GROUP "/" { + EXTERNAL_LINK "ext2soft_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dset1" + DATASET "/soft_dset1" { + HARDLINK "/dset1" + } + } + EXTERNAL_LINK "ext2softdangle_link1" { + TARGETFILE "tsoftlinks.h5" + TARGETPATH "/soft_dangle" + } + EXTERNAL_LINK "ext_link1" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group" + GROUP "group" { + HARDLINK "/group" + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 3160 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" H5T_STD_I32LE; + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + } + } + } + } + EXTERNAL_LINK "elink_t2" { + TARGETFILE "textlinksrc.h5" + TARGETPATH "/ext_link4" + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + } + EXTERNAL_LINK "ext_link2" { + TARGETFILE "textlinktar.h5" + TARGETPATH "dset" + DATASET "dset" { + HARDLINK "/dset" + } + } + EXTERNAL_LINK "ext_link3" { + TARGETFILE "textlinktar.h5" + TARGETPATH "type" + DATATYPE "type" HARDLINK "/type" + } + EXTERNAL_LINK "ext_link4" { + TARGETFILE "textlinktar.h5" + TARGETPATH "group/elink_t2" + } + EXTERNAL_LINK "ext_link5" { + TARGETFILE "textlinktar.h5" + TARGETPATH "empty_group" + GROUP "empty_group" { + HARDLINK "/empty_group" + } + } + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + DATATYPE "type" H5T_STD_I32LE; +} +} diff --git a/tools/test/h5repack/testfiles/textlinktar-prune.textlinktar.h5.ddl b/tools/test/h5repack/testfiles/textlinktar-prune.textlinktar.h5.ddl new file mode 100644 index 0000000..6787784 --- /dev/null +++ b/tools/test/h5repack/testfiles/textlinktar-prune.textlinktar.h5.ddl @@ -0,0 +1,52 @@ +HDF5 "out-textlinktar-prune.textlinktar.h5" { +GROUP "/" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + GROUP "empty_group" { + } + GROUP "group" { + DATASET "dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6 ) / ( 6 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 24 + OFFSET 2072 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + GROUP "subgroup" { + GROUP "link_to_group" { + HARDLINK "/group" + } + } + } + DATATYPE "type" H5T_STD_I32LE; +} +} diff --git a/tools/test/h5repack/testfiles/tsoftlinks-base.tsoftlinks.h5.ddl b/tools/test/h5repack/testfiles/tsoftlinks-base.tsoftlinks.h5.ddl new file mode 100644 index 0000000..b0cd32d --- /dev/null +++ b/tools/test/h5repack/testfiles/tsoftlinks-base.tsoftlinks.h5.ddl @@ -0,0 +1,77 @@ +HDF5 "out-tsoftlinks-base.tsoftlinks.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2080 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATATYPE "dtype" H5T_STD_I32BE; + GROUP "group1" { + SOFTLINK "soft_dangle" { + LINKTARGET "not_yet" + } + SOFTLINK "soft_dset1" { + LINKTARGET "/dset1" + } + SOFTLINK "soft_dset2" { + LINKTARGET "/dset2" + } + SOFTLINK "soft_dtype" { + LINKTARGET "/dtype" + } + SOFTLINK "soft_empty_grp" { + LINKTARGET "/group_empty" + } + } + GROUP "group_empty" { + } + SOFTLINK "soft_dangle" { + LINKTARGET "not_yet" + } + SOFTLINK "soft_dset1" { + LINKTARGET "/dset1" + } + SOFTLINK "soft_dtype" { + LINKTARGET "/dtype" + } + SOFTLINK "soft_empty_grp" { + LINKTARGET "/group_empty" + } + SOFTLINK "soft_group1" { + LINKTARGET "/group1" + } +} +} diff --git a/tools/test/h5repack/testfiles/tsoftlinks-merge.tsoftlinks.h5.tst b/tools/test/h5repack/testfiles/tsoftlinks-merge.tsoftlinks.h5.tst new file mode 100644 index 0000000..27c33d7 --- /dev/null +++ b/tools/test/h5repack/testfiles/tsoftlinks-merge.tsoftlinks.h5.tst @@ -0,0 +1,53 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset1 + x x /dset2 + x x /dtype + x x /group1 + x x /group1/soft_dangle + x x /group1/soft_dset1 + x x /group1/soft_dset2 + x x /group1/soft_dtype + x x /group1/soft_empty_grp + x x /group_empty + x x /soft_dangle + x x /soft_dset1 + x x /soft_dtype + x x /soft_empty_grp + x x /soft_group1 + x /soft_group1/soft_dangle + x /soft_group1/soft_dset1 + x /soft_group1/soft_dset2 + x /soft_group1/soft_dtype + x /soft_group1/soft_empty_grp + +group : </> and </> +0 differences found +dataset: </dset1> and </dset1> +0 differences found +dataset: </dset2> and </dset2> +0 differences found +datatype: </dtype> and </dtype> +0 differences found +group : </group1> and </group1> +0 differences found +link : </group1/soft_dangle> and </group1/soft_dangle> +0 differences found +Not comparable: </group1/soft_dset1> is of type H5G_LINK and </group1/soft_dset1> is of type H5G_DATASET +Not comparable: </group1/soft_dset2> is of type H5G_LINK and </group1/soft_dset2> is of type H5G_DATASET +Not comparable: </group1/soft_dtype> is of type H5G_LINK and </group1/soft_dtype> is of type H5G_TYPE +Not comparable: </group1/soft_empty_grp> is of type H5G_LINK and </group1/soft_empty_grp> is of type H5G_GROUP +group : </group_empty> and </group_empty> +0 differences found +link : </soft_dangle> and </soft_dangle> +0 differences found +Not comparable: </soft_dset1> is of type H5G_LINK and </soft_dset1> is of type H5G_DATASET +Not comparable: </soft_dtype> is of type H5G_LINK and </soft_dtype> is of type H5G_TYPE +Not comparable: </soft_empty_grp> is of type H5G_LINK and </soft_empty_grp> is of type H5G_GROUP +Not comparable: </soft_group1> is of type H5G_LINK and </soft_group1> is of type H5G_GROUP +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects without details of differences. diff --git a/tools/test/h5repack/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5.ddl b/tools/test/h5repack/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5.ddl new file mode 100644 index 0000000..fa4e12d --- /dev/null +++ b/tools/test/h5repack/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5.ddl @@ -0,0 +1,127 @@ +HDF5 "out-tsoftlinks-mergeprune.tsoftlinks.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2080 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATATYPE "dtype" H5T_STD_I32BE; + GROUP "group1" { + DATASET "soft_dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2112 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATASET "soft_dset2" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2144 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATATYPE "soft_dtype" H5T_STD_I32BE; + GROUP "soft_empty_grp" { + } + } + GROUP "group_empty" { + } + DATASET "soft_dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2176 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATATYPE "soft_dtype" H5T_STD_I32BE; + GROUP "soft_empty_grp" { + } + GROUP "soft_group1" { + SOFTLINK "soft_dangle" { + LINKTARGET "not_yet" + } + SOFTLINK "soft_dset1" { + LINKTARGET "/dset1" + } + SOFTLINK "soft_dset2" { + LINKTARGET "/dset2" + } + SOFTLINK "soft_dtype" { + LINKTARGET "/dtype" + } + SOFTLINK "soft_empty_grp" { + LINKTARGET "/group_empty" + } + } +} +} diff --git a/tools/test/h5repack/testfiles/tsoftlinks-prune.tsoftlinks.h5.ddl b/tools/test/h5repack/testfiles/tsoftlinks-prune.tsoftlinks.h5.ddl new file mode 100644 index 0000000..de58ef2 --- /dev/null +++ b/tools/test/h5repack/testfiles/tsoftlinks-prune.tsoftlinks.h5.ddl @@ -0,0 +1,47 @@ +HDF5 "out-tsoftlinks-prune.tsoftlinks.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2048 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32BE + DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 32 + OFFSET 2080 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + } + DATATYPE "dtype" H5T_STD_I32BE; + GROUP "group1" { + } + GROUP "group_empty" { + } +} +} diff --git a/tools/test/h5repack/testh5repack_detect_szip.c b/tools/test/h5repack/testh5repack_detect_szip.c index 6b86dd5..29414b4 100644 --- a/tools/test/h5repack/testh5repack_detect_szip.c +++ b/tools/test/h5repack/testh5repack_detect_szip.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -16,7 +16,6 @@ #include "h5tools_utils.h" #include "h5test.h" - /* Name of tool */ #define PROGRAMNAME "h5repack_detect_szip" @@ -39,8 +38,8 @@ *------------------------------------------------------------------------- */ - -int main(void) +int +main(void) { h5tools_setprogname(PROGRAMNAME); h5tools_setstatus(EXIT_SUCCESS); @@ -51,9 +50,9 @@ int main(void) #ifdef H5_HAVE_FILTER_SZIP if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) { HDprintf("yes\n"); - return(1); + return (1); } #endif /* H5_HAVE_FILTER_SZIP */ HDprintf("no\n"); - return(0); + return (0); } |