HDFFV-9984 - add missing ref files

7 files changed, 541 insertions, 0 deletions

diff --git a/tools/test/h5repack/CMakeTests.cmake b/tools/test/h5repack/CMakeTests.cmake
index 2a34438..1bf3fa2 100644
--- a/tools/test/h5repack/CMakeTests.cmake
+++ b/tools/test/h5repack/CMakeTests.cmake
@@ -170,6 +170,12 @@
       ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/attrregion.tattrreg.h5
       ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/dataregion.tdatareg.h5
       # tools/testfiles for external links
+      ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-base.textlinkfar.h5
+      ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-base.textlinksrc.h5
+      ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-base.textlinktar.h5
+      ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlink-base.textlink.h5
+      ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/tsoftlinks-base.tsoftlinks.h5
+      ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src-base.h5copy_extlinks_src.h5
       ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-prune.textlinkfar.h5
       ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-prune.textlinksrc.h5
       ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-prune.textlinktar.h5
diff --git a/tools/test/h5repack/h5repack.sh.in b/tools/test/h5repack/h5repack.sh.in
index 3d4e0ea..e4ae008 100644
--- a/tools/test/h5repack/h5repack.sh.in
+++ b/tools/test/h5repack/h5repack.sh.in
@@ -213,6 +213,18 @@ $SRC_H5REPACK_TESTFILES/4_vds.h5-vds_conti-v.ddl
 $SRC_H5REPACK_TESTFILES/attrregion.tattrreg.h5.ddl
 $SRC_H5REPACK_TESTFILES/dataregion.tdatareg.h5.ddl
 ########external#links#files########
+$SRC_H5REPACK_TESTFILES/textlinkfar-base.textlinkfar.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlinksrc-base.textlinksrc.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlinktar-base.textlinktar.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlink-base.textlink.h5.ddl
+$SRC_H5REPACK_TESTFILES/tsoftlinks-base.tsoftlinks.h5.ddl
+$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-base.h5copy_extlinks_src.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlinkfar-merge.textlinkfar.h5.tst
+$SRC_H5REPACK_TESTFILES/textlinksrc-merge.textlinksrc.h5.tst
+$SRC_H5REPACK_TESTFILES/textlinktar-merge.textlinktar.h5.tst
+$SRC_H5REPACK_TESTFILES/textlink-merge.textlink.h5.tst
+$SRC_H5REPACK_TESTFILES/tsoftlinks-merge.tsoftlinks.h5.tst
+$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst
 $SRC_H5REPACK_TESTFILES/textlinkfar-prune.textlinkfar.h5.ddl
 $SRC_H5REPACK_TESTFILES/textlinksrc-prune.textlinksrc.h5.ddl
 $SRC_H5REPACK_TESTFILES/textlinktar-prune.textlinktar.h5.ddl
diff --git a/tools/test/h5repack/testfiles/textlink-base-textlink.h5.ddl b/tools/test/h5repack/testfiles/textlink-base-textlink.h5.ddl
new file mode 100644
index 0000000..b87a17d
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlink-base-textlink.h5.ddl
@@ -0,0 +1,12 @@
+HDF5 "out-textlink-base.textlink.h5" {
+GROUP "/" {
+   EXTERNAL_LINK "extlink1" {
+      TARGETFILE "filename"
+      TARGETPATH "objname"
+   }
+   EXTERNAL_LINK "extlink2" {
+      TARGETFILE "anotherfile"
+      TARGETPATH "anotherobj"
+   }
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinkfar-base-textlinkfar.h5.ddl b/tools/test/h5repack/testfiles/textlinkfar-base-textlinkfar.h5.ddl
new file mode 100644
index 0000000..a5eb497
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinkfar-base-textlinkfar.h5.ddl
@@ -0,0 +1,116 @@
+HDF5 "out-textlinkfar-base.textlinkfar.h5" {
+GROUP "/" {
+   EXTERNAL_LINK "src_file" {
+      TARGETFILE "textlinksrc.h5"
+      TARGETPATH "/"
+         GROUP "/" {
+            EXTERNAL_LINK "ext2soft_link1" {
+               TARGETFILE "tsoftlinks.h5"
+               TARGETPATH "/soft_dset1"
+                  DATASET "/soft_dset1" {
+                     DATATYPE  H5T_STD_I32BE
+                     DATASPACE  SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+                     STORAGE_LAYOUT {
+                        CONTIGUOUS
+                        SIZE 32
+                        OFFSET 2848
+                     }
+                     FILTERS {
+                        NONE
+                     }
+                     FILLVALUE {
+                        FILL_TIME H5D_FILL_TIME_IFSET
+                        VALUE  H5D_FILL_VALUE_DEFAULT
+                     }
+                     ALLOCATION_TIME {
+                        H5D_ALLOC_TIME_LATE
+                     }
+                  }
+            }
+            EXTERNAL_LINK "ext2softdangle_link1" {
+               TARGETFILE "tsoftlinks.h5"
+               TARGETPATH "/soft_dangle"
+            }
+            EXTERNAL_LINK "ext_link1" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "group"
+                  GROUP "group" {
+                     DATASET "dset" {
+                        DATATYPE  H5T_STD_I32LE
+                        DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+                        STORAGE_LAYOUT {
+                           CONTIGUOUS
+                           SIZE 24
+                           OFFSET 3136
+                        }
+                        FILTERS {
+                           NONE
+                        }
+                        FILLVALUE {
+                           FILL_TIME H5D_FILL_TIME_IFSET
+                           VALUE  H5D_FILL_VALUE_DEFAULT
+                        }
+                        ALLOCATION_TIME {
+                           H5D_ALLOC_TIME_LATE
+                        }
+                     }
+                     EXTERNAL_LINK "elink_t1" {
+                        TARGETFILE "textlinksrc.h5"
+                        TARGETPATH "/"
+                           GROUP "/" {
+                              HARDLINK "/"
+                           }
+                     }
+                     EXTERNAL_LINK "elink_t2" {
+                        TARGETFILE "textlinksrc.h5"
+                        TARGETPATH "/ext_link4"
+                     }
+                     GROUP "subgroup" {
+                        GROUP "link_to_group" {
+                           HARDLINK "/group"
+                        }
+                     }
+                  }
+            }
+            EXTERNAL_LINK "ext_link2" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "dset"
+                  DATASET "dset" {
+                     DATATYPE  H5T_STD_I32LE
+                     DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+                     STORAGE_LAYOUT {
+                        CONTIGUOUS
+                        SIZE 24
+                        OFFSET 3160
+                     }
+                     FILTERS {
+                        NONE
+                     }
+                     FILLVALUE {
+                        FILL_TIME H5D_FILL_TIME_IFSET
+                        VALUE  H5D_FILL_VALUE_DEFAULT
+                     }
+                     ALLOCATION_TIME {
+                        H5D_ALLOC_TIME_LATE
+                     }
+                  }
+            }
+            EXTERNAL_LINK "ext_link3" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "type"
+                  DATATYPE "type" H5T_STD_I32LE;
+            }
+            EXTERNAL_LINK "ext_link4" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "group/elink_t2"
+            }
+            EXTERNAL_LINK "ext_link5" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "empty_group"
+                  GROUP "empty_group" {
+                  }
+            }
+         }
+   }
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinksrc-base-textlinksrc.h5.ddl b/tools/test/h5repack/testfiles/textlinksrc-base-textlinksrc.h5.ddl
new file mode 100644
index 0000000..9a9a9aa
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinksrc-base-textlinksrc.h5.ddl
@@ -0,0 +1,150 @@
+HDF5 "out-textlinksrc-base.textlinksrc.h5" {
+GROUP "/" {
+   EXTERNAL_LINK "ext2soft_link1" {
+      TARGETFILE "tsoftlinks.h5"
+      TARGETPATH "/soft_dset1"
+         DATASET "/soft_dset1" {
+            DATATYPE  H5T_STD_I32BE
+            DATASPACE  SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+            STORAGE_LAYOUT {
+               CONTIGUOUS
+               SIZE 32
+               OFFSET 2848
+            }
+            FILTERS {
+               NONE
+            }
+            FILLVALUE {
+               FILL_TIME H5D_FILL_TIME_IFSET
+               VALUE  H5D_FILL_VALUE_DEFAULT
+            }
+            ALLOCATION_TIME {
+               H5D_ALLOC_TIME_LATE
+            }
+         }
+   }
+   EXTERNAL_LINK "ext2softdangle_link1" {
+      TARGETFILE "tsoftlinks.h5"
+      TARGETPATH "/soft_dangle"
+   }
+   EXTERNAL_LINK "ext_link1" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "group"
+         GROUP "group" {
+            DATASET "dset" {
+               DATATYPE  H5T_STD_I32LE
+               DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+               STORAGE_LAYOUT {
+                  CONTIGUOUS
+                  SIZE 24
+                  OFFSET 3136
+               }
+               FILTERS {
+                  NONE
+               }
+               FILLVALUE {
+                  FILL_TIME H5D_FILL_TIME_IFSET
+                  VALUE  H5D_FILL_VALUE_DEFAULT
+               }
+               ALLOCATION_TIME {
+                  H5D_ALLOC_TIME_LATE
+               }
+            }
+            EXTERNAL_LINK "elink_t1" {
+               TARGETFILE "textlinksrc.h5"
+               TARGETPATH "/"
+                  GROUP "/" {
+                     EXTERNAL_LINK "ext2soft_link1" {
+                        TARGETFILE "tsoftlinks.h5"
+                        TARGETPATH "/soft_dset1"
+                           DATASET "/soft_dset1" {
+                              HARDLINK "/dset1"
+                           }
+                     }
+                     EXTERNAL_LINK "ext2softdangle_link1" {
+                        TARGETFILE "tsoftlinks.h5"
+                        TARGETPATH "/soft_dangle"
+                     }
+                     EXTERNAL_LINK "ext_link1" {
+                        TARGETFILE "textlinktar.h5"
+                        TARGETPATH "group"
+                           GROUP "group" {
+                              HARDLINK "/group"
+                           }
+                     }
+                     EXTERNAL_LINK "ext_link2" {
+                        TARGETFILE "textlinktar.h5"
+                        TARGETPATH "dset"
+                           DATASET "dset" {
+                              DATATYPE  H5T_STD_I32LE
+                              DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+                              STORAGE_LAYOUT {
+                                 CONTIGUOUS
+                                 SIZE 24
+                                 OFFSET 3160
+                              }
+                              FILTERS {
+                                 NONE
+                              }
+                              FILLVALUE {
+                                 FILL_TIME H5D_FILL_TIME_IFSET
+                                 VALUE  H5D_FILL_VALUE_DEFAULT
+                              }
+                              ALLOCATION_TIME {
+                                 H5D_ALLOC_TIME_LATE
+                              }
+                           }
+                     }
+                     EXTERNAL_LINK "ext_link3" {
+                        TARGETFILE "textlinktar.h5"
+                        TARGETPATH "type"
+                           DATATYPE "type" H5T_STD_I32LE;
+                     }
+                     EXTERNAL_LINK "ext_link4" {
+                        TARGETFILE "textlinktar.h5"
+                        TARGETPATH "group/elink_t2"
+                     }
+                     EXTERNAL_LINK "ext_link5" {
+                        TARGETFILE "textlinktar.h5"
+                        TARGETPATH "empty_group"
+                           GROUP "empty_group" {
+                           }
+                     }
+                  }
+            }
+            EXTERNAL_LINK "elink_t2" {
+               TARGETFILE "textlinksrc.h5"
+               TARGETPATH "/ext_link4"
+            }
+            GROUP "subgroup" {
+               GROUP "link_to_group" {
+                  HARDLINK "/group"
+               }
+            }
+         }
+   }
+   EXTERNAL_LINK "ext_link2" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "dset"
+         DATASET "dset" {
+            HARDLINK "/dset"
+         }
+   }
+   EXTERNAL_LINK "ext_link3" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "type"
+         DATATYPE "type" HARDLINK "/type"
+   }
+   EXTERNAL_LINK "ext_link4" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "group/elink_t2"
+   }
+   EXTERNAL_LINK "ext_link5" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "empty_group"
+         GROUP "empty_group" {
+            HARDLINK "/empty_group"
+         }
+   }
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinktar-base-textlinktar.h5.ddl b/tools/test/h5repack/testfiles/textlinktar-base-textlinktar.h5.ddl
new file mode 100644
index 0000000..3f02ff2
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinktar-base-textlinktar.h5.ddl
@@ -0,0 +1,168 @@
+HDF5 "out-textlinktar-base.textlinktar.h5" {
+GROUP "/" {
+   DATASET "dset" {
+      DATATYPE  H5T_STD_I32LE
+      DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+      STORAGE_LAYOUT {
+         CONTIGUOUS
+         SIZE 24
+         OFFSET 2048
+      }
+      FILTERS {
+         NONE
+      }
+      FILLVALUE {
+         FILL_TIME H5D_FILL_TIME_IFSET
+         VALUE  H5D_FILL_VALUE_DEFAULT
+      }
+      ALLOCATION_TIME {
+         H5D_ALLOC_TIME_LATE
+      }
+   }
+   GROUP "empty_group" {
+   }
+   GROUP "group" {
+      DATASET "dset" {
+         DATATYPE  H5T_STD_I32LE
+         DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+         STORAGE_LAYOUT {
+            CONTIGUOUS
+            SIZE 24
+            OFFSET 2072
+         }
+         FILTERS {
+            NONE
+         }
+         FILLVALUE {
+            FILL_TIME H5D_FILL_TIME_IFSET
+            VALUE  H5D_FILL_VALUE_DEFAULT
+         }
+         ALLOCATION_TIME {
+            H5D_ALLOC_TIME_LATE
+         }
+      }
+      EXTERNAL_LINK "elink_t1" {
+         TARGETFILE "textlinksrc.h5"
+         TARGETPATH "/"
+            GROUP "/" {
+               EXTERNAL_LINK "ext2soft_link1" {
+                  TARGETFILE "tsoftlinks.h5"
+                  TARGETPATH "/soft_dset1"
+                     DATASET "/soft_dset1" {
+                        DATATYPE  H5T_STD_I32BE
+                        DATASPACE  SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+                        STORAGE_LAYOUT {
+                           CONTIGUOUS
+                           SIZE 32
+                           OFFSET 2848
+                        }
+                        FILTERS {
+                           NONE
+                        }
+                        FILLVALUE {
+                           FILL_TIME H5D_FILL_TIME_IFSET
+                           VALUE  H5D_FILL_VALUE_DEFAULT
+                        }
+                        ALLOCATION_TIME {
+                           H5D_ALLOC_TIME_LATE
+                        }
+                     }
+               }
+               EXTERNAL_LINK "ext2softdangle_link1" {
+                  TARGETFILE "tsoftlinks.h5"
+                  TARGETPATH "/soft_dangle"
+               }
+               EXTERNAL_LINK "ext_link1" {
+                  TARGETFILE "textlinktar.h5"
+                  TARGETPATH "group"
+                     GROUP "group" {
+                        DATASET "dset" {
+                           DATATYPE  H5T_STD_I32LE
+                           DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+                           STORAGE_LAYOUT {
+                              CONTIGUOUS
+                              SIZE 24
+                              OFFSET 3136
+                           }
+                           FILTERS {
+                              NONE
+                           }
+                           FILLVALUE {
+                              FILL_TIME H5D_FILL_TIME_IFSET
+                              VALUE  H5D_FILL_VALUE_DEFAULT
+                           }
+                           ALLOCATION_TIME {
+                              H5D_ALLOC_TIME_LATE
+                           }
+                        }
+                        EXTERNAL_LINK "elink_t1" {
+                           TARGETFILE "textlinksrc.h5"
+                           TARGETPATH "/"
+                              GROUP "/" {
+                                 HARDLINK "/"
+                              }
+                        }
+                        EXTERNAL_LINK "elink_t2" {
+                           TARGETFILE "textlinksrc.h5"
+                           TARGETPATH "/ext_link4"
+                        }
+                        GROUP "subgroup" {
+                           GROUP "link_to_group" {
+                              HARDLINK "/group"
+                           }
+                        }
+                     }
+               }
+               EXTERNAL_LINK "ext_link2" {
+                  TARGETFILE "textlinktar.h5"
+                  TARGETPATH "dset"
+                     DATASET "dset" {
+                        DATATYPE  H5T_STD_I32LE
+                        DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+                        STORAGE_LAYOUT {
+                           CONTIGUOUS
+                           SIZE 24
+                           OFFSET 3160
+                        }
+                        FILTERS {
+                           NONE
+                        }
+                        FILLVALUE {
+                           FILL_TIME H5D_FILL_TIME_IFSET
+                           VALUE  H5D_FILL_VALUE_DEFAULT
+                        }
+                        ALLOCATION_TIME {
+                           H5D_ALLOC_TIME_LATE
+                        }
+                     }
+               }
+               EXTERNAL_LINK "ext_link3" {
+                  TARGETFILE "textlinktar.h5"
+                  TARGETPATH "type"
+                     DATATYPE "type" H5T_STD_I32LE;
+               }
+               EXTERNAL_LINK "ext_link4" {
+                  TARGETFILE "textlinktar.h5"
+                  TARGETPATH "group/elink_t2"
+               }
+               EXTERNAL_LINK "ext_link5" {
+                  TARGETFILE "textlinktar.h5"
+                  TARGETPATH "empty_group"
+                     GROUP "empty_group" {
+                     }
+               }
+            }
+      }
+      EXTERNAL_LINK "elink_t2" {
+         TARGETFILE "textlinksrc.h5"
+         TARGETPATH "/ext_link4"
+      }
+      GROUP "subgroup" {
+         GROUP "link_to_group" {
+            HARDLINK "/group"
+         }
+      }
+   }
+   DATATYPE "type" H5T_STD_I32LE;
+}
+}
diff --git a/tools/test/h5repack/testfiles/tsoftlinks-base-tsoftlinks.h5.ddl b/tools/test/h5repack/testfiles/tsoftlinks-base-tsoftlinks.h5.ddl
new file mode 100644
index 0000000..b0cd32d
--- /dev/null
+++ b/tools/test/h5repack/testfiles/tsoftlinks-base-tsoftlinks.h5.ddl
@@ -0,0 +1,77 @@
+HDF5 "out-tsoftlinks-base.tsoftlinks.h5" {
+GROUP "/" {
+   DATASET "dset1" {
+      DATATYPE  H5T_STD_I32BE
+      DATASPACE  SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+      STORAGE_LAYOUT {
+         CONTIGUOUS
+         SIZE 32
+         OFFSET 2048
+      }
+      FILTERS {
+         NONE
+      }
+      FILLVALUE {
+         FILL_TIME H5D_FILL_TIME_IFSET
+         VALUE  H5D_FILL_VALUE_DEFAULT
+      }
+      ALLOCATION_TIME {
+         H5D_ALLOC_TIME_LATE
+      }
+   }
+   DATASET "dset2" {
+      DATATYPE  H5T_STD_I32BE
+      DATASPACE  SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+      STORAGE_LAYOUT {
+         CONTIGUOUS
+         SIZE 32
+         OFFSET 2080
+      }
+      FILTERS {
+         NONE
+      }
+      FILLVALUE {
+         FILL_TIME H5D_FILL_TIME_IFSET
+         VALUE  H5D_FILL_VALUE_DEFAULT
+      }
+      ALLOCATION_TIME {
+         H5D_ALLOC_TIME_LATE
+      }
+   }
+   DATATYPE "dtype" H5T_STD_I32BE;
+   GROUP "group1" {
+      SOFTLINK "soft_dangle" {
+         LINKTARGET "not_yet"
+      }
+      SOFTLINK "soft_dset1" {
+         LINKTARGET "/dset1"
+      }
+      SOFTLINK "soft_dset2" {
+         LINKTARGET "/dset2"
+      }
+      SOFTLINK "soft_dtype" {
+         LINKTARGET "/dtype"
+      }
+      SOFTLINK "soft_empty_grp" {
+         LINKTARGET "/group_empty"
+      }
+   }
+   GROUP "group_empty" {
+   }
+   SOFTLINK "soft_dangle" {
+      LINKTARGET "not_yet"
+   }
+   SOFTLINK "soft_dset1" {
+      LINKTARGET "/dset1"
+   }
+   SOFTLINK "soft_dtype" {
+      LINKTARGET "/dtype"
+   }
+   SOFTLINK "soft_empty_grp" {
+      LINKTARGET "/group_empty"
+   }
+   SOFTLINK "soft_group1" {
+      LINKTARGET "/group1"
+   }
+}
+}