Merge pull request #8 in ~VCHOI/my_third_fork from develop to bugfix/new_shutdown_fsm

* commit '35fd0ec8ceffe96cee352187154da15c967fb990':
  Updated H5Tcopy() to get the dataset's datatype through the VOL when that is passed in as the object ID.
  Fix fortran test and test library linking
  Update GCC 6 & 7 flags for CMake builds
  Move -Wnormalized down into GCC 6.x flags
  Put the memcpy overlap check back into H5MM.
  Fixed the heap overflow in t_filters_parallel
  Fixed some low-hanging fruit from -fsanitize in t_filters_parallel.
  Add lib dir for testing plugins
  Add support for GCC 7.x warnings, update warnhist script to account for them, clean up warnings.
  Add H5_HLDLL prefix for windows link
  HDFFV-10805 cleanup examples and test code
  Fix minor typo in H5S_select_iter_release
  Add missing fortran mods
  HDFFV-10805 Fix test of library libinfo
  Cleanup possible CMake target conflicts
  Correct CMake issues

3 files changed, 30 insertions, 28 deletions

diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt
index 1f4428f..92b61fc 100644
--- a/tools/test/h5repack/CMakeLists.txt
+++ b/tools/test/h5repack/CMakeLists.txt
@@ -43,24 +43,24 @@ set_target_properties (h5repacktest PROPERTIES FOLDER tools)
 # If plugin library tests can be tested
 #-----------------------------------------------------------------------------
 if (BUILD_SHARED_LIBS)
-  set (HDF5_TOOL_PLUGIN_LIB_CORENAME         "dynlibadd")
-  set (HDF5_TOOL_PLUGIN_LIB_NAME             "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TOOL_PLUGIN_LIB_CORENAME}")
-  set (HDF5_TOOL_PLUGIN_LIB_TARGET           ${HDF5_TOOL_PLUGIN_LIB_CORENAME})
-  set (HDF5_TOOL_PLUGIN_LIB_VCORENAME        "dynlibvers")
-  set (HDF5_TOOL_PLUGIN_LIB_VNAME            "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TOOL_PLUGIN_LIB_VCORENAME}")
-  set (HDF5_TOOL_PLUGIN_LIB_VTARGET          ${HDF5_TOOL_PLUGIN_LIB_VCORENAME})
+  set (H5REPACK_TOOL_PLUGIN_LIB_CORENAME         "dynlibadd")
+  set (H5REPACK_TOOL_PLUGIN_LIB_NAME             "${HDF5_EXTERNAL_LIB_PREFIX}${H5REPACK_TOOL_PLUGIN_LIB_CORENAME}")
+  set (H5REPACK_TOOL_PLUGIN_LIB_TARGET           ${H5REPACK_TOOL_PLUGIN_LIB_CORENAME})
+  set (H5REPACK_TOOL_PLUGIN_LIB_VCORENAME        "dynlibvers")
+  set (H5REPACK_TOOL_PLUGIN_LIB_VNAME            "${HDF5_EXTERNAL_LIB_PREFIX}${H5REPACK_TOOL_PLUGIN_LIB_VCORENAME}")
+  set (H5REPACK_TOOL_PLUGIN_LIB_VTARGET          ${H5REPACK_TOOL_PLUGIN_LIB_VCORENAME})
 
-  add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c)
-  target_include_directories (${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-  TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED)
-  target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET})
-  H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED "LIB")
+  add_library (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c)
+  target_include_directories (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  TARGET_C_PROPERTIES (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} SHARED)
+  target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET})
+  H5_SET_LIB_OPTIONS (${H5REPACK_TOOL_PLUGIN_LIB_TARGET} ${H5REPACK_TOOL_PLUGIN_LIB_NAME} SHARED "LIB")
 
-  add_library (${HDF5_TOOL_PLUGIN_LIB_VTARGET} SHARED dynlib_vrpk.c)
-  target_include_directories (${HDF5_TOOL_PLUGIN_LIB_VTARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-  TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_VTARGET} SHARED)
-  target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_VTARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET})
-  H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_VTARGET} ${HDF5_TOOL_PLUGIN_LIB_VNAME} SHARED "LIB")
+  add_library (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} SHARED dynlib_vrpk.c)
+  target_include_directories (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  TARGET_C_PROPERTIES (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} SHARED)
+  target_link_libraries (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} PRIVATE ${HDF5_TEST_LIBSH_TARGET})
+  H5_SET_LIB_OPTIONS (${H5REPACK_TOOL_PLUGIN_LIB_VTARGET} ${H5REPACK_TOOL_PLUGIN_LIB_VNAME} SHARED "LIB")
 
   # make plugins dir
   file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins")
@@ -68,20 +68,20 @@ if (BUILD_SHARED_LIBS)
   # Copy plugin library to a plugins folder
   #-----------------------------------------------------------------------------
   add_custom_command (
-      TARGET     ${HDF5_TOOL_PLUGIN_LIB_TARGET}
+      TARGET     ${H5REPACK_TOOL_PLUGIN_LIB_TARGET}
       POST_BUILD
       COMMAND    ${CMAKE_COMMAND}
       ARGS       -E copy_if_different
-            "$<TARGET_FILE:${HDF5_TOOL_PLUGIN_LIB_TARGET}>"
-            "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${HDF5_TOOL_PLUGIN_LIB_TARGET}>"
+            "$<TARGET_FILE:${H5REPACK_TOOL_PLUGIN_LIB_TARGET}>"
+            "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${H5REPACK_TOOL_PLUGIN_LIB_TARGET}>"
   )
   add_custom_command (
-      TARGET     ${HDF5_TOOL_PLUGIN_LIB_VTARGET}
+      TARGET     ${H5REPACK_TOOL_PLUGIN_LIB_VTARGET}
       POST_BUILD
       COMMAND    ${CMAKE_COMMAND}
       ARGS       -E copy_if_different
-            "$<TARGET_FILE:${HDF5_TOOL_PLUGIN_LIB_VTARGET}>"
-            "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${HDF5_TOOL_PLUGIN_LIB_VTARGET}>"
+            "$<TARGET_FILE:${H5REPACK_TOOL_PLUGIN_LIB_VTARGET}>"
+            "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${H5REPACK_TOOL_PLUGIN_LIB_VTARGET}>"
   )
 endif ()
 
diff --git a/tools/test/h5repack/CMakeTests.cmake b/tools/test/h5repack/CMakeTests.cmake
index 3a90b2c..50be28a 100644
--- a/tools/test/h5repack/CMakeTests.cmake
+++ b/tools/test/h5repack/CMakeTests.cmake
@@ -677,6 +677,7 @@
               -D "TEST_REFERENCE=${testname}.${resultfile}.tst"
               -D "TEST_ENV_VAR=HDF5_PLUGIN_PATH"
               -D "TEST_ENV_VALUE=${CMAKE_BINARY_DIR}/plugins"
+              -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_OUTPUT_DIRECTORY}"
               -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
       )
       set_tests_properties (H5REPACK_UD-${testname} PROPERTIES DEPENDS H5REPACK_UD-${testname}-clear-objects)
@@ -691,6 +692,7 @@
               -D "TEST_REFERENCE=${resultfile}-${testname}.ddl"
               -D "TEST_ENV_VAR=HDF5_PLUGIN_PATH"
               -D "TEST_ENV_VALUE=${CMAKE_BINARY_DIR}/plugins"
+              -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_OUTPUT_DIRECTORY}"
               -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
       )
       set_tests_properties (H5REPACK_UD-${testname}-h5dump PROPERTIES DEPENDS "H5REPACK_UD-${testname}")
diff --git a/tools/test/h5repack/h5repacktst.c b/tools/test/h5repack/h5repacktst.c
index 0ae570b..a89bf10 100644
--- a/tools/test/h5repack/h5repacktst.c
+++ b/tools/test/h5repack/h5repacktst.c
@@ -2907,10 +2907,10 @@ out:
 static
 int make_all_filters(hid_t loc_id)
 {
-    hid_t    dcpl; /* dataset creation property list */
-    hid_t    sid;  /* dataspace ID */
-    hid_t    dtid;
-    hid_t    dsid;
+    hid_t    dcpl = H5I_INVALID_HID; /* dataset creation property list */
+    hid_t    sid = H5I_INVALID_HID;  /* dataspace ID */
+    hid_t    dtid = H5I_INVALID_HID;
+    hid_t    dsid = H5I_INVALID_HID;
 #if defined (H5_HAVE_FILTER_SZIP)
     unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK;
     unsigned szip_pixels_per_block=8;
@@ -3083,7 +3083,7 @@ int make_early(void)
     hid_t   tid=-1;
     hid_t   dcpl=-1;
     int     i;
-    char    name[10];
+    char    name[16];
     int     iter=100;
 
     if ((fid = H5Fcreate(FNAME5, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
@@ -3178,7 +3178,7 @@ int make_layout(hid_t loc_id)
     hsize_t  chunk_dims[RANK]={CDIM1,CDIM2};
     int      buf[DIM1][DIM2];
     int      i, j, n;
-    char     name[6];
+    char     name[16];
 
 
     for (i=n=0; i<DIM1; i++)