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author | Quincey Koziol <koziol@hdfgroup.org> | 2018-11-07 21:20:28 (GMT) |
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committer | Quincey Koziol <koziol@hdfgroup.org> | 2018-11-07 21:20:28 (GMT) |
commit | 140f72b74847822e50bd10bb7051049b77f59abb (patch) | |
tree | d6f2af86ac3f1edd21414d97de1771fb382d742d /tools/test/h5stat | |
parent | ef9ffc630ab6449230bb3fec29583264a6c1fe18 (diff) | |
parent | 40338b9e40b980eb4bb709e4f36661d7620d9a1f (diff) | |
download | hdf5-140f72b74847822e50bd10bb7051049b77f59abb.zip hdf5-140f72b74847822e50bd10bb7051049b77f59abb.tar.gz hdf5-140f72b74847822e50bd10bb7051049b77f59abb.tar.bz2 |
Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol
Diffstat (limited to 'tools/test/h5stat')
-rw-r--r-- | tools/test/h5stat/h5stat_gentest.c | 312 |
1 files changed, 134 insertions, 178 deletions
diff --git a/tools/test/h5stat/h5stat_gentest.c b/tools/test/h5stat/h5stat_gentest.c index 2daf24b..ae11032 100644 --- a/tools/test/h5stat/h5stat_gentest.c +++ b/tools/test/h5stat/h5stat_gentest.c @@ -14,7 +14,7 @@ /* * Generate the binary hdf5 files for the h5stat tests. * Usage: just execute the program without any arguments will - * generate all the binary hdf5 files + * generate all the binary hdf5 files * * If you regenerate the test files (e.g., changing some code, * trying it on a new platform, ...), you need to verify the correctness @@ -24,25 +24,25 @@ #include "H5private.h" /* For gen_newgrat_file() */ -#define NEWGRAT_FILE "h5stat_newgrat.h5" -#define DATASET_NAME "DATASET_NAME" -#define GROUP_NAME "GROUP" -#define ATTR_NAME "ATTR" -#define NUM_GRPS 35000 -#define NUM_ATTRS 100 +#define NEWGRAT_FILE "h5stat_newgrat.h5" +#define DATASET_NAME "DATASET_NAME" +#define GROUP_NAME "GROUP" +#define ATTR_NAME "ATTR" +#define NUM_GRPS 35000 +#define NUM_ATTRS 100 /* Declarations for gen_idx_file() */ -#define IDX_FILE "h5stat_idx.h5" -#define DSET "dset" -#define DSET_FILTER "dset_filter" +#define IDX_FILE "h5stat_idx.h5" +#define DSET "dset" +#define DSET_FILTER "dset_filter" /* For gen_threshold_file() */ -#define THRESHOLD_FILE "h5stat_threshold.h5" -#define THRES_ATTR_NAME "attr" -#define THRES_ATTR_GRP_NAME "grp_attr" -#define THRES_DSET_NAME "dset" -#define THRES_NUM 10 -#define THRES_NUM_25 25 +#define THRESHOLD_FILE "h5stat_threshold.h5" +#define THRES_ATTR_NAME "attr" +#define THRES_ATTR_GRP_NAME "grp_attr" +#define THRES_DSET_NAME "dset" +#define THRES_NUM 10 +#define THRES_NUM_25 25 /* For gen_err_refcount() */ #define ERR_REFCOUNT_FILE "h5stat_err_refcount.h5" @@ -51,7 +51,7 @@ * Generate HDF5 file with latest format with * NUM_GRPS groups and NUM_ATTRS attributes for the dataset */ -static void +static void gen_newgrat_file(const char *fname) { hid_t fcpl = -1; /* File creation property */ @@ -62,79 +62,66 @@ gen_newgrat_file(const char *fname) hid_t sid = -1; /* Dataspace id */ hid_t attr_id = -1; /* Attribute id */ hid_t did = -1; /* Dataset id */ - char name[30]; /* Group name */ - char attrname[30]; /* Attribute name */ - int i; /* Local index variable */ + char name[30]; /* Group name */ + char attrname[30]; /* Attribute name */ + int i; /* Local index variable */ /* Get a copy file access property list */ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) - goto error; + goto error; /* Set to use latest library format */ if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) - goto error; + goto error; /* Get a copy of file creation property list */ if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) - goto error; + goto error; /* Set file space handling strategy */ if(H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, 1, (hsize_t)1) < 0) - goto error; + goto error; /* Create file */ if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, fcpl, fapl)) < 0) - goto error; + goto error; /* Create NUM_GRPS groups in the root group */ for(i = 1; i <= NUM_GRPS; i++) { sprintf(name, "%s%d", GROUP_NAME,i); if((gid = H5Gcreate2(fid, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; if(H5Gclose(gid) < 0) - goto error; + goto error; } /* end for */ /* Create a datatype to commit and use */ if((tid = H5Tcopy(H5T_NATIVE_INT)) < 0) - goto error; + goto error; /* Create dataspace for dataset */ if((sid = H5Screate(H5S_SCALAR)) < 0) - goto error; + goto error; /* Create dataset */ if((did = H5Dcreate2(fid, DATASET_NAME, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; /* Create NUM_ATTRS for the dataset */ for(i = 1; i <= NUM_ATTRS; i++) { sprintf(attrname, "%s%d", ATTR_NAME,i); if((attr_id = H5Acreate2(did, attrname, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; if(H5Aclose(attr_id) < 0) - goto error; + goto error; } /* end for */ /* Close dataset, dataspace, datatype, file */ - if(H5Pclose(fapl) < 0) - goto error; - if(H5Pclose(fcpl) < 0) - goto error; - if(H5Dclose(did) < 0) - goto error; - if(H5Sclose(sid) < 0) - goto error; - if(H5Tclose(tid) < 0) - goto error; - if(H5Fclose(fid) < 0) - goto error; - error: H5E_BEGIN_TRY { - H5Pclose(fapl); - H5Pclose(fcpl); - H5Aclose(attr_id); + H5Pclose(fapl); + H5Pclose(fcpl); + H5Aclose(attr_id); H5Dclose(did); H5Tclose(tid); H5Sclose(sid); @@ -145,192 +132,175 @@ error: /* * Generate an HDF5 file with groups, datasets, attributes for testing the options: - * -l N (--links=N): Set the threshold for # of links when printing information for small groups. - * -m N (--dims=N): Set the threshold for the # of dimension sizes when printing information for small datasets. - * -a N (--numattrs=N): Set the threshold for the # of attributes when printing information for small # of attributes. + * -l N (--links=N): Set the threshold for # of links when printing information for small groups. + * -m N (--dims=N): Set the threshold for the # of dimension sizes when printing information for small datasets. + * -a N (--numattrs=N): Set the threshold for the # of attributes when printing information for small # of attributes. */ static void gen_threshold_file(const char *fname) { - hid_t fid; /* File ID */ - hid_t sid0, sid1, sid2, sid3, sid4; /* Dataspace IDs */ - hid_t did; /* Dataset ID */ - hid_t attr_id; /* Attribute ID */ - hid_t gid; /* Group ID */ - hsize_t two_dims[] = {2, 5}; /* Dimension array */ - hsize_t one_dims[] = {6}; /* Dimension array */ - hsize_t zero_dims[] = {0}; /* Dimension array */ - char name[30]; /* Name */ - unsigned i; /* Local index variable */ + hid_t fid = -1; /* File ID */ + hid_t sid0 = -1; /* Dataspace IDs */ + hid_t sid1 = -1; /* Dataspace IDs */ + hid_t sid2 = -1; /* Dataspace IDs */ + hid_t sid3 = -1; /* Dataspace IDs */ + hid_t sid4 = -1; /* Dataspace IDs */ + hid_t did = -1; /* Dataset ID */ + hid_t attr_id = -1; /* Attribute ID */ + hid_t gid = -1; /* Group ID */ + hsize_t two_dims[] = {2, 5}; /* Dimension array */ + hsize_t one_dims[] = {6}; /* Dimension array */ + hsize_t zero_dims[] = {0}; /* Dimension array */ + char name[30]; /* Name */ + unsigned i; /* Local index variable */ /* Create file */ if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; /* Create 1-D dataspace with zero dimension size */ if((sid0 = H5Screate_simple(1, zero_dims, NULL)) < 0) - goto error; + goto error; /* Create 1-D dataspace with non-zero dimension size*/ if((sid1 = H5Screate_simple(1, one_dims, NULL)) < 0) - goto error; + goto error; /* Create 2-D dataspace */ if((sid2 = H5Screate_simple(2, two_dims, NULL)) < 0) - goto error; + goto error; /* Create scalar dataspace */ if((sid3 = H5Screate(H5S_SCALAR)) < 0) - goto error; + goto error; /* Create null dataspace */ if((sid4 = H5Screate(H5S_NULL)) < 0) - goto error; + goto error; /* Create an attribute for the root group */ if((attr_id = H5Acreate2(fid, "attr", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; if(H5Aclose(attr_id) < 0) - goto error; + goto error; /* Create 1-D dataset with zero dimension size for the root group */ if((did = H5Dcreate2(fid, "zero_dset", H5T_NATIVE_UCHAR, sid0, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; /* Create 11 attributes for the dataset */ for(i = 1; i <= (THRES_NUM+1); i++) { sprintf(name, "%s%d", THRES_ATTR_NAME,i); if((attr_id = H5Acreate2(did, name, H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; if(H5Aclose(attr_id) < 0) - goto error; + goto error; } if(H5Dclose(did) < 0) - goto error; + goto error; /* Create dataset with scalar dataspace for the root group */ if((did = H5Dcreate2(fid, "scalar_dset", H5T_NATIVE_UCHAR, sid3, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; if(H5Dclose(did) < 0) - goto error; + goto error; /* Create dataset with null dataspace for the root group */ if((did = H5Dcreate2(fid, "null_dset", H5T_NATIVE_UCHAR, sid4, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; if(H5Dclose(did) < 0) - goto error; + goto error; /* Create 2-D dataset for the root group */ if((did = H5Dcreate2(fid, "dset", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; /* Create 10 attributes for the 2-D dataset */ for(i = 1; i <= THRES_NUM; i++) { sprintf(name, "%s%d", THRES_ATTR_NAME,i); if((attr_id = H5Acreate2(did, name, H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; if(H5Aclose(attr_id) < 0) - goto error; + goto error; } if(H5Dclose(did) < 0) - goto error; + goto error; /* Create first group */ if((gid = H5Gcreate2(fid, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; /* Create an attribute for the group */ if((attr_id = H5Acreate2(gid, "ATTR", H5T_NATIVE_INT, sid3, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; /* Close attribute */ if(H5Aclose(attr_id) < 0) - goto error; + goto error; /* Create 10 1-D datasets with non-zero dimension size for the group */ for(i = 1; i <= THRES_NUM; i++) { - /* set up dataset name */ + /* set up dataset name */ sprintf(name, "%s%d", THRES_DSET_NAME,i); - /* Create the dataset */ - if((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + /* Create the dataset */ + if((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto error; - /* Close the dataset */ + /* Close the dataset */ if(H5Dclose(did) < 0) - goto error; + goto error; } /* Close the group */ if(H5Gclose(gid) < 0) - goto error; + goto error; /* Create second group */ if((gid = H5Gcreate2(fid, "group2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; /* Create 25 attributes for the group */ for(i = 1; i <= THRES_NUM_25; i++) { - /* Set up attribute name */ + /* Set up attribute name */ sprintf(name, "%s%d", THRES_ATTR_GRP_NAME,i); - /* Create the attribute */ + /* Create the attribute */ if((attr_id = H5Acreate2(gid, name, H5T_NATIVE_INT, sid2, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; - /* Close the attribute */ + /* Close the attribute */ if(H5Aclose(attr_id) < 0) - goto error; + goto error; } /* Close the group */ if(H5Gclose(gid) < 0) - goto error; + goto error; /* Create third group */ if((gid = H5Gcreate2(fid, "group3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + goto error; /* Create 9 1-D datasets with non-zero dimension size for the group */ for(i = 1; i < THRES_NUM; i++) { - /* set up dataset name */ + /* set up dataset name */ sprintf(name, "%s%d", THRES_DSET_NAME,i); - /* Create the dataset */ - if((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) - goto error; + /* Create the dataset */ + if((did = H5Dcreate2(gid, name, H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto error; - /* Close the dataset */ + /* Close the dataset */ if(H5Dclose(did) < 0) - goto error; + goto error; } - /* Close the group */ - if(H5Gclose(gid) < 0) - goto error; - - - /* Close dataspaces */ - if(H5Sclose(sid0) < 0) - goto error; - if(H5Sclose(sid1) < 0) - goto error; - if(H5Sclose(sid2) < 0) - goto error; - if(H5Sclose(sid3) < 0) - goto error; - if(H5Sclose(sid4) < 0) - goto error; - - /* Close file */ - if(H5Fclose(fid) < 0) - goto error; - error: H5E_BEGIN_TRY { H5Gclose(gid); - H5Aclose(attr_id); + H5Aclose(attr_id); H5Dclose(did); H5Sclose(sid0); H5Sclose(sid1); @@ -346,84 +316,73 @@ error: * Function: gen_idx_file * * Purpose: Create a file with datasets that use Fixed Array indexing: - * one dataset: fixed dimension, chunked layout, w/o filters - * one dataset: fixed dimension, chunked layout, w/ filters + * one dataset: fixed dimension, chunked layout, w/o filters + * one dataset: fixed dimension, chunked layout, w/ filters * */ -static void +static void gen_idx_file(const char *fname) { - hid_t fapl = -1; /* file access property id */ - hid_t fid = -1; /* file id */ - hid_t sid = -1; /* space id */ - hid_t dcpl = -1; /* dataset creation property id */ - hid_t did = -1, did2 = -1; /* dataset id */ - hsize_t dims[1] = {10}; /* dataset dimension */ - hsize_t c_dims[1] = {2}; /* chunk dimension */ - int i; /* local index variable */ - int buf[10]; /* data buffer */ + hid_t fapl = -1; /* file access property id */ + hid_t fid = -1; /* file id */ + hid_t sid = -1; /* space id */ + hid_t dcpl = -1; /* dataset creation property id */ + hid_t did = -1, did2 = -1; /* dataset id */ + hsize_t dims[1] = {10}; /* dataset dimension */ + hsize_t c_dims[1] = {2}; /* chunk dimension */ + int i; /* local index variable */ + int buf[10]; /* data buffer */ /* Get a copy of the file access property */ if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) - goto error; + goto error; /* Set the "use the latest format" bounds for creating objects in the file */ if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) - goto error; + goto error; /* Create file */ if((fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) - goto error; + goto error; /* Create data */ for(i = 0; i < 10; i++) - buf[i] = i; + buf[i] = i; /* Set chunk */ if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) - goto error; + goto error; if(H5Pset_chunk(dcpl, 1, c_dims) < 0) - goto error; + goto error; /* Create a 1D dataset */ if((sid = H5Screate_simple(1, dims, NULL)) < 0) - goto error; + goto error; if((did = H5Dcreate2(fid, DSET, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) - goto error; - + goto error; + /* Write to the dataset */ if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - goto error; + goto error; #if defined (H5_HAVE_FILTER_DEFLATE) /* set deflate data */ if(H5Pset_deflate(dcpl, 9) < 0) - goto error; + goto error; /* Create and write the dataset */ if((did2 = H5Dcreate2(fid, DSET_FILTER, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) - goto error; + goto error; if(H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) - goto error; + goto error; /* Close the dataset */ if(H5Dclose(did2) < 0) - goto error; + goto error; #endif /* closing: dataspace, dataset, file */ - if(H5Pclose(fapl) < 0) - goto error; - if(H5Pclose(dcpl) < 0) - goto error; - if(H5Sclose(sid) < 0) - goto error; - if(H5Dclose(did) < 0) - goto error; - if(H5Fclose(fid) < 0) - goto error; - error: H5E_BEGIN_TRY { H5Pclose(fapl); @@ -451,7 +410,7 @@ error: * H5O_refcount_decode in the jira issue. * */ -static void +static void gen_err_refcount(const char *fname) { hid_t fid = -1; /* File identifier */ @@ -525,16 +484,13 @@ gen_err_refcount(const char *fname) /* Offset of the message ID to modify is as follows: */ /* 4520: the offset of the object header containing the attribute message with the committed datatype */ - /* 24: the offset in the object header containing the version of the + /* 24: the offset in the object header containing the version of the attribute message */ - if((fd = HDopen(fname, O_RDWR, 0633)) < 0) - goto error; - if(HDlseek(fd, 4520+24, SEEK_SET) < 0) - goto error; - if(HDwrite(fd, &val, 2) < 0) - goto error; - if(HDclose(fd) < 0) - goto error; + if((fd = HDopen(fname, O_RDWR, 0633)) >= 0) { + HDlseek(fd, 4520+24, SEEK_SET); + HDwrite(fd, &val, 2); + HDclose(fd); + } error: H5E_BEGIN_TRY { @@ -548,8 +504,8 @@ error: } H5E_END_TRY; } /* gen_err_refcount() */ -/* - * The following two test files are generated with older versions +/* + * The following two test files are generated with older versions * of the library for HDFFV-10333. They are used for testing in * testh5stat.sh.in. * @@ -559,7 +515,7 @@ error: * Then a "0" is written to the "dimension" field in the layout * message to trigger the error. * This is to verify HDFFV-10333 that h5stat will exit gracefully - * when encountered error similar to H5O__layout_decode in the + * when encountered error similar to H5O__layout_decode in the * jira issue. * * (2) h5stat_err_old_fill.h5 @@ -568,7 +524,7 @@ error: * Then an illegal size is written to the "size" fild in the * fill value message to trigger the error. * This is to verify HDFFV-10333 that h5stat will exit gracefully - * when encountered error similar to H5O_fill_old_decode in the + * when encountered error similar to H5O_fill_old_decode in the * jira issue. */ |