[svn-r15887] Purpose: Close bug 1332

Description: Improved external link traversal of h5dump.  h5dump will now
    properly avoid all cycles, even those spanning multiple files.  Improvement
    to the output of committed datatypes.  Committed datatypes are now checked
    for uniqueness (like other objects).  Tests added for these cases.

Tested: kagiso, linew, smirom (h5committest)

16 files changed, 158 insertions, 20 deletions

diff --git a/tools/testfiles/textlinkfar.ddl b/tools/testfiles/textlinkfar.ddl
new file mode 100644
index 0000000..4151710
--- /dev/null
+++ b/tools/testfiles/textlinkfar.ddl
@@ -0,0 +1,69 @@
+#############################
+Expected output for 'h5dump textlinkfar.h5'
+#############################
+HDF5 "textlinkfar.h5" {
+GROUP "/" {
+   EXTERNAL_LINK "src_file" {
+      TARGETFILE "textlinksrc.h5"
+      TARGETPATH "/"
+         GROUP "/" {
+            EXTERNAL_LINK "ext_link1" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "group"
+                  GROUP "group" {
+                     DATASET "dset" {
+                        DATATYPE  H5T_STD_I32LE
+                        DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+                        DATA {
+                        (0): 1, 2, 3, 4, 5, 6
+                        }
+                     }
+                     EXTERNAL_LINK "elink_t1" {
+                        TARGETFILE "textlinksrc.h5"
+                        TARGETPATH "/"
+                           GROUP "/" {
+                              HARDLINK "/"
+                           }
+                     }
+                     EXTERNAL_LINK "elink_t2" {
+                        TARGETFILE "textlinksrc.h5"
+                        TARGETPATH "/ext_link4"
+                     }
+                     GROUP "subgroup" {
+                        GROUP "link_to_group" {
+                           HARDLINK "/group"
+                        }
+                     }
+                  }
+            }
+            EXTERNAL_LINK "ext_link2" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "dset"
+                  DATASET "dset" {
+                     DATATYPE  H5T_STD_I32LE
+                     DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+                     DATA {
+                     (0): 1, 2, 3, 4, 5, 6
+                     }
+                  }
+            }
+            EXTERNAL_LINK "ext_link3" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "type"
+                  DATATYPE "type" H5T_STD_I32LE;
+
+            }
+            EXTERNAL_LINK "ext_link4" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "group/elink_t2"
+            }
+            EXTERNAL_LINK "ext_link5" {
+               TARGETFILE "textlinktar.h5"
+               TARGETPATH "empty_group"
+                  GROUP "empty_group" {
+                  }
+            }
+         }
+   }
+}
+}
diff --git a/tools/testfiles/textlinkfar.h5 b/tools/testfiles/textlinkfar.h5
new file mode 100644
index 0000000..6fb3130
--- /dev/null
+++ b/tools/testfiles/textlinkfar.h5
diff --git a/tools/testfiles/textlinksrc-1.ls b/tools/testfiles/textlinksrc-1.ls
index 3b0da0b..5e81dec 100644
--- a/tools/testfiles/textlinksrc-1.ls
+++ b/tools/testfiles/textlinksrc-1.ls
@@ -11,6 +11,8 @@
 /ext_link1/elink_t1/ext_link4 External Link {textlinktar.h5//group/elink_t2} {**NOT FOUND**}
 /ext_link1/elink_t1/ext_link5 External Link {textlinktar.h5//empty_group} {Group}
 /ext_link1/elink_t2      External Link {textlinksrc.h5//ext_link4} {**NOT FOUND**}
+/ext_link1/subgroup      Group
+/ext_link1/subgroup/link_to_group Group, same as /ext_link1
 /ext_link2               External Link {textlinktar.h5//dset} {Already Visited}
 /ext_link3               External Link {textlinktar.h5//type} {Already Visited}
 /ext_link4               External Link {textlinktar.h5//group/elink_t2} {Already Visited}
diff --git a/tools/testfiles/textlinksrc-3.ls b/tools/testfiles/textlinksrc-3.ls
index dd9d1b1..a86ca32 100644
--- a/tools/testfiles/textlinksrc-3.ls
+++ b/tools/testfiles/textlinksrc-3.ls
@@ -10,3 +10,5 @@ ext_link1                External Link {textlinktar.h5//group} {Group}
 /elink_t1/ext_link4      External Link {textlinktar.h5//group/elink_t2} {**NOT FOUND**}
 /elink_t1/ext_link5      External Link {textlinktar.h5//empty_group} {Group}
 /elink_t2                External Link {textlinksrc.h5//ext_link4} {**NOT FOUND**}
+/subgroup                Group
+/subgroup/link_to_group  Group, same as /ext_link1
diff --git a/tools/testfiles/textlinksrc.ddl b/tools/testfiles/textlinksrc.ddl
new file mode 100644
index 0000000..b806c56
--- /dev/null
+++ b/tools/testfiles/textlinksrc.ddl
@@ -0,0 +1,60 @@
+#############################
+Expected output for 'h5dump textlinksrc.h5'
+#############################
+HDF5 "textlinksrc.h5" {
+GROUP "/" {
+   EXTERNAL_LINK "ext_link1" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "group"
+         GROUP "group" {
+            DATASET "dset" {
+               DATATYPE  H5T_STD_I32LE
+               DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+               DATA {
+               (0): 1, 2, 3, 4, 5, 6
+               }
+            }
+            EXTERNAL_LINK "elink_t1" {
+               TARGETFILE "textlinksrc.h5"
+               TARGETPATH "/"
+            }
+            EXTERNAL_LINK "elink_t2" {
+               TARGETFILE "textlinksrc.h5"
+               TARGETPATH "/ext_link4"
+            }
+            GROUP "subgroup" {
+               GROUP "link_to_group" {
+                  HARDLINK "/group"
+               }
+            }
+         }
+   }
+   EXTERNAL_LINK "ext_link2" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "dset"
+         DATASET "dset" {
+            DATATYPE  H5T_STD_I32LE
+            DATASPACE  SIMPLE { ( 6 ) / ( 6 ) }
+            DATA {
+            (0): 1, 2, 3, 4, 5, 6
+            }
+         }
+   }
+   EXTERNAL_LINK "ext_link3" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "type"
+         DATATYPE "type" H5T_STD_I32LE;
+
+   }
+   EXTERNAL_LINK "ext_link4" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "group/elink_t2"
+   }
+   EXTERNAL_LINK "ext_link5" {
+      TARGETFILE "textlinktar.h5"
+      TARGETPATH "empty_group"
+         GROUP "empty_group" {
+         }
+   }
+}
+}
diff --git a/tools/testfiles/textlinktar.h5 b/tools/testfiles/textlinktar.h5
index bf009eb..fe33e10 100644
--- a/tools/testfiles/textlinktar.h5
+++ b/tools/testfiles/textlinktar.h5
diff --git a/tools/testfiles/thlink.h5.xml b/tools/testfiles/thlink.h5.xml
index 72b7b31..c2737b9 100644
--- a/tools/testfiles/thlink.h5.xml
+++ b/tools/testfiles/thlink.h5.xml
@@ -31,11 +31,11 @@ Expected output for 'h5dump --xml thlink.h5'
    </hdf5:Dataset>
    <hdf5:Group Name="g1" OBJ-XID="xid_1408" H5Path="/g1" Parents="xid_96" H5ParentPaths="/" >
       <hdf5:Dataset Name="dset2" OBJ-XID="xid_808-1" H5Path="/g1/dset2" Parents="xid_1408" H5ParentPaths="/g1">
-         <hdf5:DatasetPtr OBJ-XID="xid_808" H5Path="/g1/dset2"/>
+         <hdf5:DatasetPtr OBJ-XID="xid_808" H5Path="/dset1"/>
       </hdf5:Dataset>
       <hdf5:Group Name="g1.1" OBJ-XID="xid_2000" H5Path="/g1/g1.1" Parents="xid_1408" H5ParentPaths="/g1" >
          <hdf5:Dataset Name="dset3" OBJ-XID="xid_808-2" H5Path="/g1/g1.1/dset3" Parents="xid_2000" H5ParentPaths="/g1/g1.1">
-            <hdf5:DatasetPtr OBJ-XID="xid_808" H5Path="/g1/g1.1/dset3"/>
+            <hdf5:DatasetPtr OBJ-XID="xid_808" H5Path="/dset1"/>
          </hdf5:Dataset>
       </hdf5:Group>
    </hdf5:Group>
diff --git a/tools/testfiles/tmany.h5.xml b/tools/testfiles/tmany.h5.xml
index 49efc51..93a0610 100644
--- a/tools/testfiles/tmany.h5.xml
+++ b/tools/testfiles/tmany.h5.xml
@@ -267,7 +267,7 @@ Expected output for 'h5dump --xml tmany.h5'
       </hdf5:Group>
       <hdf5:Group Name="g1.2" OBJ-XID="xid_5968" H5Path="/g1/g1.2" Parents="xid_800" H5ParentPaths="/g1" >
          <hdf5:Dataset Name="link1" OBJ-XID="xid_2864-1" H5Path="/g1/g1.2/link1" Parents="xid_5968" H5ParentPaths="/g1/g1.2">
-            <hdf5:DatasetPtr OBJ-XID="xid_2864" H5Path="/g1/g1.2/link1"/>
+            <hdf5:DatasetPtr OBJ-XID="xid_2864" H5Path="/g1/g1.1/dset1"/>
          </hdf5:Dataset>
       </hdf5:Group>
    </hdf5:Group>
@@ -313,7 +313,7 @@ Expected output for 'h5dump --xml tmany.h5'
    </hdf5:Group>
    <hdf5:Group Name="g4" OBJ-XID="xid_10784" H5Path="/g4" Parents="xid_96" H5ParentPaths="/" >
       <hdf5:Dataset Name="dset2" OBJ-XID="xid_11488-2" H5Path="/g4/dset2" Parents="xid_10784" H5ParentPaths="/g4">
-         <hdf5:DatasetPtr OBJ-XID="xid_11488" H5Path="/g4/dset2"/>
+         <hdf5:DatasetPtr OBJ-XID="xid_11488" H5Path="/g3/link3"/>
       </hdf5:Dataset>
    </hdf5:Group>
    <hdf5:Group Name="g5" OBJ-XID="xid_8416" H5Path="/g5" Parents="xid_96" H5ParentPaths="/" >
diff --git a/tools/testfiles/tnamed_dtype_attr.ddl b/tools/testfiles/tnamed_dtype_attr.ddl
index 391abf8..4ef3158 100644
--- a/tools/testfiles/tnamed_dtype_attr.ddl
+++ b/tools/testfiles/tnamed_dtype_attr.ddl
@@ -17,7 +17,7 @@ GROUP "/" {
          }
       }
    }
-   DATATYPE "Datatype"       H5T_STD_I32LE;
+   DATATYPE "Datatype" H5T_STD_I32LE;
       ATTRIBUTE "Attribute" {
          DATATYPE  H5T_STD_I32LE
          DATASPACE  SCALAR
@@ -26,6 +26,8 @@ GROUP "/" {
          }
       }
 
+   DATATYPE "Link_to_Datatype" HARDLINK "/Datatype"
+
    GROUP "g1" {
       ATTRIBUTE "Attribute" {
          DATATYPE  "/Datatype"
diff --git a/tools/testfiles/tnamed_dtype_attr.h5 b/tools/testfiles/tnamed_dtype_attr.h5
index 9be537c..e7bf23d 100644
--- a/tools/testfiles/tnamed_dtype_attr.h5
+++ b/tools/testfiles/tnamed_dtype_attr.h5
diff --git a/tools/testfiles/tnamed_dtype_attr.h5.xml b/tools/testfiles/tnamed_dtype_attr.h5.xml
index 0b9ceae..2e3cfa3 100644
--- a/tools/testfiles/tnamed_dtype_attr.h5.xml
+++ b/tools/testfiles/tnamed_dtype_attr.h5.xml
@@ -4,7 +4,7 @@ Expected output for 'h5dump --xml tnamed_dtype_attr.h5'
 <?xml version="1.0" encoding="UTF-8"?>
 <hdf5:HDF5-File xmlns:hdf5="http://hdfgroup.org/DTDs/HDF5-File" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hdfgroup.org/DTDs/HDF5File http://hdfgroup.org/DTDs/HDF5-File.xsd">
 <hdf5:RootGroup OBJ-XID="xid_96" H5Path="/">
-   <hdf5:Dataset Name="Dataset" OBJ-XID="xid_1264" H5Path= "/Dataset" Parents="xid_96" H5ParentPaths="/">
+   <hdf5:Dataset Name="Dataset" OBJ-XID="xid_1256" H5Path= "/Dataset" Parents="xid_96" H5ParentPaths="/">
       <hdf5:StorageLayout>
          <hdf5:ContiguousLayout/>
       </hdf5:StorageLayout>
@@ -16,12 +16,12 @@ Expected output for 'h5dump --xml tnamed_dtype_attr.h5'
       <hdf5:Dataspace>
          <hdf5:ScalarDataspace />
       </hdf5:Dataspace>
-      <hdf5:NamedDataTypePtr OBJ-XID="xid_792" H5Path="/Datatype" />
+      <hdf5:NamedDataTypePtr OBJ-XID="xid_800" H5Path="/Datatype" />
       <hdf5:Attribute Name="Attribute">
          <hdf5:Dataspace>
             <hdf5:ScalarDataspace />
          </hdf5:Dataspace>
-         <hdf5:NamedDataTypePtr OBJ-XID="xid_792" H5Path="/Datatype" />
+         <hdf5:NamedDataTypePtr OBJ-XID="xid_800" H5Path="/Datatype" />
          <hdf5:Data>
             <hdf5:DataFromFile>
             8
@@ -32,19 +32,22 @@ Expected output for 'h5dump --xml tnamed_dtype_attr.h5'
          <hdf5:NoData/>
       </hdf5:Data>
    </hdf5:Dataset>
-   <hdf5:NamedDataType Name="Datatype" OBJ-XID="xid_792" H5Path="/Datatype" Parents="xid_96" H5ParentPaths="/">
+   <hdf5:NamedDataType Name="Datatype" OBJ-XID="xid_800" H5Path="/Datatype" Parents="xid_96" H5ParentPaths="/">
       <hdf5:DataType>
          <hdf5:AtomicType>
             <hdf5:IntegerType ByteOrder="LE" Sign="true" Size="4" />
          </hdf5:AtomicType>
       </hdf5:DataType>
    </hdf5:NamedDataType>
-   <hdf5:Group Name="g1" OBJ-XID="xid_1536" H5Path="/g1" Parents="xid_96" H5ParentPaths="/" >
+   <hdf5:NamedDataType Name="Link_to_Datatype" OBJ-XID="xid_800" H5Path="/Link_to_Datatype" Parents="xid_96" H5ParentPaths="/">
+      <hdf5:NamedDatatypePtr OBJ-XID="xid_800" H5Path="/Datatype"/>
+   </hdf5:NamedDataType>
+   <hdf5:Group Name="g1" OBJ-XID="xid_1528" H5Path="/g1" Parents="xid_96" H5ParentPaths="/" >
       <hdf5:Attribute Name="Attribute">
          <hdf5:Dataspace>
             <hdf5:ScalarDataspace />
          </hdf5:Dataspace>
-         <hdf5:NamedDataTypePtr OBJ-XID="xid_792" H5Path="/Datatype" />
+         <hdf5:NamedDataTypePtr OBJ-XID="xid_800" H5Path="/Datatype" />
          <hdf5:Data>
             <hdf5:DataFromFile>
             8
diff --git a/tools/testfiles/torderattr1.ddl b/tools/testfiles/torderattr1.ddl
index 3c4bd6b..de3b72b 100644
--- a/tools/testfiles/torderattr1.ddl
+++ b/tools/testfiles/torderattr1.ddl
@@ -75,7 +75,7 @@ GROUP "/" {
          DATASPACE  SCALAR
       }
    }
-   DATATYPE "t"       H5T_STD_I32LE;
+   DATATYPE "t" H5T_STD_I32LE;
       ATTRIBUTE "a" {
          DATATYPE  H5T_STD_U8LE
          DATASPACE  SCALAR
@@ -89,7 +89,7 @@ GROUP "/" {
          DATASPACE  SCALAR
       }
 
-   DATATYPE "tt"       H5T_STD_I32LE;
+   DATATYPE "tt" H5T_STD_I32LE;
       ATTRIBUTE "a" {
          DATATYPE  H5T_STD_U8LE
          DATASPACE  SCALAR
diff --git a/tools/testfiles/torderattr2.ddl b/tools/testfiles/torderattr2.ddl
index 89799d3..3686984 100644
--- a/tools/testfiles/torderattr2.ddl
+++ b/tools/testfiles/torderattr2.ddl
@@ -15,7 +15,7 @@ GROUP "/" {
       DATATYPE  H5T_STD_U8LE
       DATASPACE  SCALAR
    }
-   DATATYPE "tt"       H5T_STD_I32LE;
+   DATATYPE "tt" H5T_STD_I32LE;
       ATTRIBUTE "c" {
          DATATYPE  H5T_STD_U8LE
          DATASPACE  SCALAR
@@ -29,7 +29,7 @@ GROUP "/" {
          DATASPACE  SCALAR
       }
 
-   DATATYPE "t"       H5T_STD_I32LE;
+   DATATYPE "t" H5T_STD_I32LE;
       ATTRIBUTE "c" {
          DATATYPE  H5T_STD_U8LE
          DATASPACE  SCALAR
diff --git a/tools/testfiles/torderattr3.ddl b/tools/testfiles/torderattr3.ddl
index 5dba83e..9dc027a 100644
--- a/tools/testfiles/torderattr3.ddl
+++ b/tools/testfiles/torderattr3.ddl
@@ -75,7 +75,7 @@ GROUP "/" {
          DATASPACE  SCALAR
       }
    }
-   DATATYPE "t"       H5T_STD_I32LE;
+   DATATYPE "t" H5T_STD_I32LE;
       ATTRIBUTE "a" {
          DATATYPE  H5T_STD_U8LE
          DATASPACE  SCALAR
@@ -89,7 +89,7 @@ GROUP "/" {
          DATASPACE  SCALAR
       }
 
-   DATATYPE "tt"       H5T_STD_I32LE;
+   DATATYPE "tt" H5T_STD_I32LE;
       ATTRIBUTE "c" {
          DATATYPE  H5T_STD_U8LE
          DATASPACE  SCALAR
diff --git a/tools/testfiles/torderattr4.ddl b/tools/testfiles/torderattr4.ddl
index fc59f6a..38af25d 100644
--- a/tools/testfiles/torderattr4.ddl
+++ b/tools/testfiles/torderattr4.ddl
@@ -15,7 +15,7 @@ GROUP "/" {
       DATATYPE  H5T_STD_U8LE
       DATASPACE  SCALAR
    }
-   DATATYPE "tt"       H5T_STD_I32LE;
+   DATATYPE "tt" H5T_STD_I32LE;
       ATTRIBUTE "a" {
          DATATYPE  H5T_STD_U8LE
          DATASPACE  SCALAR
@@ -29,7 +29,7 @@ GROUP "/" {
          DATASPACE  SCALAR
       }
 
-   DATATYPE "t"       H5T_STD_I32LE;
+   DATATYPE "t" H5T_STD_I32LE;
       ATTRIBUTE "c" {
          DATATYPE  H5T_STD_U8LE
          DATASPACE  SCALAR
diff --git a/tools/testfiles/tvlstr.ddl b/tools/testfiles/tvlstr.ddl
index 3b67af6..eda8e000 100644
--- a/tools/testfiles/tvlstr.ddl
+++ b/tools/testfiles/tvlstr.ddl
@@ -24,7 +24,7 @@ GROUP "/" {
       (2): "", NULL
       }
    }
-   DATATYPE "vl_string_type"       H5T_STRING {
+   DATATYPE "vl_string_type" H5T_STRING {
          STRSIZE H5T_VARIABLE;
          STRPAD H5T_STR_NULLPAD;
          CSET H5T_CSET_ASCII;