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authorAllen Byrne <byrn@hdfgroup.org>2020-08-14 17:16:58 (GMT)
committerAllen Byrne <byrn@hdfgroup.org>2020-08-14 17:16:58 (GMT)
commit500d87fd1f5d6068feeb71119bc5d22843203fef (patch)
treed98efc114fc684fd835aa31168457e72c833af99 /tools
parent044ee6f88c78a70eb3694d8c73fa74c77fde9689 (diff)
downloadhdf5-500d87fd1f5d6068feeb71119bc5d22843203fef.zip
hdf5-500d87fd1f5d6068feeb71119bc5d22843203fef.tar.gz
hdf5-500d87fd1f5d6068feeb71119bc5d22843203fef.tar.bz2
HDFFV-9984 Add options to merge/prune external links during repack
Diffstat (limited to 'tools')
-rw-r--r--tools/lib/h5tools_utils.c2
-rw-r--r--tools/src/h5copy/h5copy.c4
-rw-r--r--tools/src/h5repack/h5repack.h38
-rw-r--r--tools/src/h5repack/h5repack_copy.c84
-rw-r--r--tools/src/h5repack/h5repack_main.c53
-rw-r--r--tools/test/h5diff/h5diffgentest.c1
-rw-r--r--tools/test/h5repack/CMakeTests.cmake113
-rw-r--r--tools/test/h5repack/h5repack.sh.in300
-rw-r--r--tools/test/h5repack/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst26
-rw-r--r--tools/test/h5repack/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl28
-rw-r--r--tools/test/h5repack/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl6
-rw-r--r--tools/test/h5repack/testfiles/h5copy_extlinks_src.h5bin0 -> 2184 bytes
-rw-r--r--tools/test/h5repack/testfiles/h5copy_extlinks_trg.h5bin0 -> 2168 bytes
-rw-r--r--tools/test/h5repack/testfiles/h5repack-help.txt3
-rw-r--r--tools/test/h5repack/testfiles/textlink-merge.textlink.h5.tst13
-rw-r--r--tools/test/h5repack/testfiles/textlink-mergeprune.textlink.h5.ddl4
-rw-r--r--tools/test/h5repack/testfiles/textlink-prune.textlink.h5.ddl4
-rw-r--r--tools/test/h5repack/testfiles/textlinkfar-merge.textlinkfar.h5.tst20
-rw-r--r--tools/test/h5repack/testfiles/textlinkfar-mergeprune.textlinkfar.h5.ddl152
-rw-r--r--tools/test/h5repack/testfiles/textlinkfar-prune.textlinkfar.h5.ddl4
-rw-r--r--tools/test/h5repack/testfiles/textlinksrc-merge.textlinksrc.h5.tst32
-rw-r--r--tools/test/h5repack/testfiles/textlinksrc-mergeprune.textlinksrc.h5.ddl187
-rw-r--r--tools/test/h5repack/testfiles/textlinksrc-prune.textlinksrc.h5.ddl4
-rw-r--r--tools/test/h5repack/testfiles/textlinktar-merge.textlinktar.h5.tst44
-rw-r--r--tools/test/h5repack/testfiles/textlinktar-mergeprune.textlinktar.h5.ddl200
-rw-r--r--tools/test/h5repack/testfiles/textlinktar-prune.textlinktar.h5.ddl52
-rw-r--r--tools/test/h5repack/testfiles/tsoftlinks-merge.tsoftlinks.h5.tst53
-rw-r--r--tools/test/h5repack/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5.ddl127
-rw-r--r--tools/test/h5repack/testfiles/tsoftlinks-prune.tsoftlinks.h5.ddl47
29 files changed, 1481 insertions, 120 deletions
diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c
index 1a1c2db..6167dd9 100644
--- a/tools/lib/h5tools_utils.c
+++ b/tools/lib/h5tools_utils.c
@@ -901,7 +901,7 @@ tmpfile(void)
* link_info->trg_path must be freed out of this function
*-------------------------------------------------------------------------*/
int
-H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_t *link_info, hbool_t get_obj_type)
+H5tools_get_symlink_info(hid_t file_id, const char *linkpath, h5tool_link_info_t *link_info, hbool_t get_obj_type)
{
htri_t l_ret;
H5O_info2_t trg_oinfo;
diff --git a/tools/src/h5copy/h5copy.c b/tools/src/h5copy/h5copy.c
index 5b19ae7..a6e4d4e 100644
--- a/tools/src/h5copy/h5copy.c
+++ b/tools/src/h5copy/h5copy.c
@@ -212,8 +212,8 @@ main (int argc, const char *argv[])
unsigned flag = 0;
unsigned verbose = 0;
unsigned parents = 0;
- hid_t ocpl_id = (-1); /* Object copy property list */
- hid_t lcpl_id = (-1); /* Link creation property list */
+ hid_t ocpl_id = H5I_INVALID_HID; /* Object copy property list */
+ hid_t lcpl_id = H5I_INVALID_HID; /* Link creation property list */
int opt;
int li_ret;
h5tool_link_info_t linkinfo;
diff --git a/tools/src/h5repack/h5repack.h b/tools/src/h5repack/h5repack.h
index caa1166..b124fdb 100644
--- a/tools/src/h5repack/h5repack.h
+++ b/tools/src/h5repack/h5repack.h
@@ -101,25 +101,27 @@ typedef struct {
/* all the above, ready to go to the hrepack call */
typedef struct {
- pack_opttbl_t *op_tbl; /*table with all -c and -f options */
- int all_layout; /*apply the layout to all objects */
- int all_filter; /*apply the filter to all objects */
+ pack_opttbl_t *op_tbl; /* table with all -c and -f options */
+ int all_layout; /* apply the layout to all objects */
+ int all_filter; /* apply the filter to all objects */
filter_info_t filter_g[H5_REPACK_MAX_NFILTERS]; /*global filter array for the ALL case */
- int n_filter_g; /*number of global filters */
- chunk_info_t chunk_g; /*global chunk INFO for the ALL case */
- H5D_layout_t layout_g; /*global layout information for the ALL case */
- int verbose; /*verbose mode */
- hsize_t min_comp; /*minimum size to compress, in bytes */
- int use_native; /*use a native type in write */
- hbool_t latest; /*pack file with the latest file format */
- H5F_libver_t low_bound; /* The file's low bound as in H5Fset_libver_bounds() */
- H5F_libver_t high_bound; /* The file's high bound as in H5Fset_libver_bounds() */
- hid_t fin_fapl; /* FAPL to use for opening the input file */
- hid_t fout_fapl; /* FAPL to use for opening/creating the output file */
- int grp_compact; /* Set the maximum number of links to store as header messages in the group */
- int grp_indexed; /* Set the minimum number of links to store in the indexed format */
- int msg_size[8]; /* Minimum size of shared messages: dataspace,
- datatype, fill value, filter pipleline, attribute */
+ int n_filter_g; /* number of global filters */
+ chunk_info_t chunk_g; /* global chunk INFO for the ALL case */
+ H5D_layout_t layout_g; /* global layout information for the ALL case */
+ int verbose; /* verbose mode */
+ hbool_t merge; /* Merge external file. */
+ hbool_t prune; /* Don't follow external file. */
+ hsize_t min_comp; /* minimum size to compress, in bytes */
+ int use_native; /* use a native type in write */
+ hbool_t latest; /* pack file with the latest file format */
+ H5F_libver_t low_bound; /* The file's low bound as in H5Fset_libver_bounds() */
+ H5F_libver_t high_bound; /* The file's high bound as in H5Fset_libver_bounds() */
+ hid_t fin_fapl; /* FAPL to use for opening the input file */
+ hid_t fout_fapl; /* FAPL to use for opening/creating the output file */
+ int grp_compact; /* Set the maximum number of links to store as header messages in the group */
+ int grp_indexed; /* Set the minimum number of links to store in the indexed format */
+ int msg_size[8]; /* Minimum size of shared messages: dataspace,
+ datatype, fill value, filter pipleline, attribute */
const char *ublock_filename; /* user block file name */
hsize_t ublock_size; /* user block size */
hsize_t meta_block_size; /* metadata aggregation block size (for H5Pset_meta_block_size) */
diff --git a/tools/src/h5repack/h5repack_copy.c b/tools/src/h5repack/h5repack_copy.c
index b1d6ab4..8f3496f 100644
--- a/tools/src/h5repack/h5repack_copy.c
+++ b/tools/src/h5repack/h5repack_copy.c
@@ -594,6 +594,8 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt,
hid_t f_space_id = H5I_INVALID_HID; /* file space ID */
hid_t ftype_id = H5I_INVALID_HID; /* file type ID */
hid_t wtype_id = H5I_INVALID_HID; /* read/write type ID */
+ hid_t ocpl_id = H5I_INVALID_HID; /* property to pass copy options */
+ hid_t lcpl_id = H5I_INVALID_HID; /* link creation property list */
named_dt_t *named_dt_head = NULL; /* Pointer to the stack of named datatypes copied */
size_t msize; /* size of type */
hsize_t nelmts; /* number of elements in dataset */
@@ -610,6 +612,7 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt,
int req_filter; /* there was a request for a filter */
int req_obj_layout = 0; /* request layout to current object */
unsigned crt_order_flags; /* group creation order flag */
+ h5tool_link_info_t linkinfo;
unsigned i;
unsigned u;
int ifil;
@@ -619,6 +622,9 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt,
hsize_t size_dset;
int ret_value = 0;
+ /* init linkinfo struct */
+ HDmemset(&linkinfo, 0, sizeof(h5tool_link_info_t));
+
/*-------------------------------------------------------------------------
* copy the supplied object list
*-------------------------------------------------------------------------
@@ -1137,26 +1143,25 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt,
*-------------------------------------------------------------------------
*/
else {
- hid_t pid = H5I_INVALID_HID;
-
/* create property to pass copy options */
- if ((pid = H5Pcreate(H5P_OBJECT_COPY)) < 0)
+ if ((ocpl_id = H5Pcreate(H5P_OBJECT_COPY)) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Pcreate failed");
/* set options for object copy */
- if (H5Pset_copy_object(pid, H5O_COPY_WITHOUT_ATTR_FLAG) < 0)
+ if (H5Pset_copy_object(ocpl_id, H5O_COPY_WITHOUT_ATTR_FLAG) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Pset_copy_object failed");
if (H5Ocopy(fidin, /* Source file or group identifier */
travt->objs[i].name, /* Name of the source object to be copied */
fidout, /* Destination file or group identifier */
travt->objs[i].name, /* Name of the destination object */
- pid, /* Properties which apply to the copy */
+ ocpl_id, /* Properties which apply to the copy */
H5P_DEFAULT) < 0) /* Properties which apply to the new hard link */
H5TOOLS_GOTO_ERROR((-1), "H5Ocopy failed");
- if (H5Pclose(pid) < 0)
+ if (H5Pclose(ocpl_id) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Pclose failed");
+ ocpl_id = H5I_INVALID_HID;
/*-------------------------------------------------------------------------
* Copy attrs manually
@@ -1228,11 +1233,61 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt,
if (options->verbose)
HDprintf(FORMAT_OBJ, "link", travt->objs[i].name);
- if (H5Lcopy(fidin, travt->objs[i].name, fidout, travt->objs[i].name, H5P_DEFAULT, H5P_DEFAULT) < 0)
- H5TOOLS_GOTO_ERROR((-1), "H5Lcopy failed");
+ /* Check -X option. */
+ if (options->merge) {
+ if (H5tools_get_symlink_info(fidin, travt->objs[i].name, &linkinfo, 1) == 0) {
+ /* dangling link */
+ if (options->prune) {
+ HDprintf("Pruned %s.\n", travt->objs[i].name);
+ }
+ else {
+ if (H5Lcopy(fidin, travt->objs[i].name, fidout, travt->objs[i].name, H5P_DEFAULT, H5P_DEFAULT) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Lcopy failed");
+ }
+ }
+ else {
+ /* valid link */
+ /* create property to pass copy options */
+ if ((ocpl_id = H5Pcreate(H5P_OBJECT_COPY)) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pcreate create property failed");
- if (options->verbose)
- HDprintf(FORMAT_OBJ, "link", travt->objs[i].name);
+ /* set options for object copy */
+ if (H5Pset_copy_object(ocpl_id, H5O_COPY_EXPAND_EXT_LINK_FLAG) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pset_copy_object failed");
+
+ /* Create link creation property list */
+ if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) {
+ H5TOOLS_GOTO_ERROR((-1), "H5Pcreate link creation property failed");
+ }
+
+ /* Set flag for intermediate group creation */
+ if (H5Pset_create_intermediate_group(lcpl_id, TRUE) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pset_create_intermediate_group failed");
+
+ if (H5Ocopy(fidin, travt->objs[i].name, fidout, travt->objs[i].name, ocpl_id, lcpl_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Ocopy failed");
+
+ if (H5Pclose(lcpl_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pclose failed");
+
+ if (H5Pclose(ocpl_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pclose failed");
+ }
+
+ /* free link info path */
+ if (linkinfo.trg_path)
+ HDfree(linkinfo.trg_path);
+ linkinfo.trg_path = NULL;
+ } /* options->merge */
+ else {
+ if (options->prune) {
+ HDprintf("Pruned %s.\n", travt->objs[i].name);
+ }
+ else {
+ if (H5Lcopy(fidin, travt->objs[i].name, fidout, travt->objs[i].name, H5P_DEFAULT, H5P_DEFAULT) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Lcopy failed");
+ }
+ }
break;
default:
@@ -1249,15 +1304,22 @@ done:
if (named_datatype_free(&named_dt_head, 0) < 0)
H5TOOLS_ERROR((-1), "named_datatype_free failed");
}
- else
+ else {
H5E_BEGIN_TRY {
named_datatype_free(&named_dt_head, 1);
} H5E_END_TRY;
+ }
+
+ /* free link info path */
+ if (linkinfo.trg_path)
+ HDfree(linkinfo.trg_path);
H5E_BEGIN_TRY
{
H5Gclose(grp_in);
H5Gclose(grp_out);
+ H5Pclose(lcpl_id);
+ H5Pclose(ocpl_id);
H5Pclose(dcpl_in);
H5Pclose(gcpl_in);
H5Pclose(gcpl_out);
diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c
index 0ad61c0..cf0c611 100644
--- a/tools/src/h5repack/h5repack_main.c
+++ b/tools/src/h5repack/h5repack_main.c
@@ -32,36 +32,38 @@ const char *outfile = NULL;
* Command-line options: The user can specify short or long-named
* parameters.
*/
-static const char *s_opts = "hVvf:l:m:e:nLj:k:c:d:s:u:b:M:t:a:i:o:S:P:T:G:q:z:E";
+static const char *s_opts = "a:b:c:d:e:f:hi:j:k:l:m:no:q:s:t:u:vz:EG:LM:P:S:T:VXW1:2:3:4:5:6:";
static struct long_options l_opts[] = {
- { "help", no_arg, 'h' },
- { "version", no_arg, 'V' },
- { "verbose", no_arg, 'v' },
+ { "alignment", require_arg, 'a' },
+ { "block", require_arg, 'b' },
+ { "compact", require_arg, 'c' },
+ { "indexed", require_arg, 'd' },
+ { "file", require_arg, 'e' },
{ "filter", require_arg, 'f' },
+ { "help", no_arg, 'h' },
+ { "infile", require_arg, 'i' }, /* for backward compability */
+ { "low", require_arg, 'j' },
+ { "high", require_arg, 'k' },
{ "layout", require_arg, 'l' },
{ "minimum", require_arg, 'm' },
- { "file", require_arg, 'e' },
{ "native", no_arg, 'n' },
- { "latest", no_arg, 'L' },
- { "low", require_arg, 'j' },
- { "high", require_arg, 'k' },
- { "compact", require_arg, 'c' },
- { "indexed", require_arg, 'd' },
+ { "outfile", require_arg, 'o' }, /* for backward compability */
+ { "sort_by", require_arg, 'q' },
{ "ssize", require_arg, 's' },
+ { "threshold", require_arg, 't' },
{ "ublock", require_arg, 'u' },
- { "block", require_arg, 'b' },
+ { "verbose", no_arg, 'v' },
+ { "sort_order", require_arg, 'z' },
+ { "enable-error-stack", no_arg, 'E' },
+ { "fs_pagesize", require_arg, 'G' },
+ { "latest", no_arg, 'L' },
{ "metadata_block_size", require_arg, 'M' },
- { "threshold", require_arg, 't' },
- { "alignment", require_arg, 'a' },
- { "infile", require_arg, 'i' }, /* for backward compability */
- { "outfile", require_arg, 'o' }, /* for backward compability */
- { "fs_strategy", require_arg, 'S' },
{ "fs_persist", require_arg, 'P' },
+ { "fs_strategy", require_arg, 'S' },
{ "fs_threshold", require_arg, 'T' },
- { "fs_pagesize", require_arg, 'G' },
- { "sort_by", require_arg, 'q' },
- { "sort_order", require_arg, 'z' },
- { "enable-error-stack", no_arg, 'E' },
+ { "version", no_arg, 'V' },
+ { "merge", no_arg, 'X' },
+ { "prune", no_arg, 'W' },
{ "src-vol-value", require_arg, '1' },
{ "src-vol-name", require_arg, '2' },
{ "src-vol-info", require_arg, '3' },
@@ -113,6 +115,9 @@ static void usage(const char *prog) {
PRINTVALSTREAM(rawoutstream, " --high=BOUND The high bound for library release versions to use\n");
PRINTVALSTREAM(rawoutstream, " when creating objects in the file\n");
PRINTVALSTREAM(rawoutstream, " (default is H5F_LIBVER_LATEST)\n");
+ PRINTVALSTREAM(rawoutstream, " --merge Follow external soft link recursively and merge data\n");
+ PRINTVALSTREAM(rawoutstream, " --prune Do not follow external soft links and remove link\n");
+ PRINTVALSTREAM(rawoutstream, " --merge --prune Follow external link, merge data and remove dangling link\n");
PRINTVALSTREAM(rawoutstream, " -c L1, --compact=L1 Maximum number of links in header messages\n");
PRINTVALSTREAM(rawoutstream, " -d L2, --indexed=L2 Minimum number of links in the indexed format\n");
PRINTVALSTREAM(rawoutstream, " -s S[:F], --ssize=S[:F] Shared object header message minimum size\n");
@@ -545,6 +550,14 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
options->high_bound = bound;
break;
+ case 'X':
+ options->merge = TRUE;
+ break;
+
+ case 'W':
+ options->prune = TRUE;
+ break;
+
case 'c':
options->grp_compact = HDatoi( opt_arg );
if (options->grp_compact > 0)
diff --git a/tools/test/h5diff/h5diffgentest.c b/tools/test/h5diff/h5diffgentest.c
index afdf46c..173a5ce 100644
--- a/tools/test/h5diff/h5diffgentest.c
+++ b/tools/test/h5diff/h5diffgentest.c
@@ -8035,7 +8035,6 @@ void test_double_epsilon(const char *fname1, const char *fname2)
{
hid_t fid1 = H5I_INVALID_HID, fid2 = H5I_INVALID_HID;
hsize_t dims1[2] = { 4, 7 };
- hsize_t dims2[2] = { 4, 7 };
double wdata[4][7];
int i, j;
diff --git a/tools/test/h5repack/CMakeTests.cmake b/tools/test/h5repack/CMakeTests.cmake
index 4823d07..2a34438 100644
--- a/tools/test/h5repack/CMakeTests.cmake
+++ b/tools/test/h5repack/CMakeTests.cmake
@@ -72,6 +72,14 @@
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_paged_persist.h5
# h5diff/testfile
${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_attr1.h5
+ # tools/testfiles for external links
+ ${HDF5_TOOLS_DIR}/testfiles/tsoftlinks.h5
+ ${HDF5_TOOLS_DIR}/testfiles/textlinkfar.h5
+ ${HDF5_TOOLS_DIR}/testfiles/textlinksrc.h5
+ ${HDF5_TOOLS_DIR}/testfiles/textlinktar.h5
+ ${HDF5_TOOLS_DIR}/testfiles/textlink.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_trg.h5
# tools/testfiles
${HDF5_TOOLS_DIR}/testfiles/tfamily00000.h5
${HDF5_TOOLS_DIR}/testfiles/tfamily00001.h5
@@ -128,6 +136,13 @@
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_version_test.h5repack_layout.h5
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_zero.h5repack_layout.h5
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_none.h5repack_layout.UD.h5
+ # tools/testfiles for external links
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/tsoftlinks-merge.tsoftlinks.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-merge.textlinkfar.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-merge.textlinksrc.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-merge.textlinktar.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlink-merge.textlink.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5
)
set (LIST_DDL_TEST_FILES
@@ -154,6 +169,19 @@
# refs
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/attrregion.tattrreg.h5
${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/dataregion.tdatareg.h5
+ # tools/testfiles for external links
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-prune.textlinkfar.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-prune.textlinksrc.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-prune.textlinktar.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlink-prune.textlink.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/tsoftlinks-prune.tsoftlinks.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinkfar-mergeprune.textlinkfar.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinksrc-mergeprune.textlinksrc.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlinktar-mergeprune.textlinktar.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/textlink-mergeprune.textlink.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5
+ ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5
)
foreach (h5_file ${LIST_HDF5_TEST_FILES})
@@ -276,7 +304,7 @@
endif ()
endmacro ()
- macro (ADD_H5_CMP_TEST testname testfilter testtype resultcode resultfile)
+ macro (ADD_H5_FILTER_TEST testname testfilter testtype resultcode resultfile)
if ("${testtype}" STREQUAL "SKIP")
if (NOT HDF5_ENABLE_USING_MEMCHECKER)
add_test (
@@ -410,6 +438,48 @@
endif ()
endmacro ()
+ macro (ADD_H5_DIFF_TEST testname testtype resultcode testfile)
+ if ("${testtype}" STREQUAL "SKIP")
+ if (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (
+ NAME H5REPACK_DIFF-${testname}
+ COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}"
+ )
+ set_property(TEST H5REPACK_DIFF-${testname} PROPERTY DISABLED)
+ endif ()
+ else ()
+ add_test (
+ NAME H5REPACK_DIFF-${testname}-clear-objects
+ COMMAND ${CMAKE_COMMAND} -E remove testfiles/out-${testname}.${testfile}
+ )
+ set_tests_properties (H5REPACK_DIFF-${testname}-clear-objects PROPERTIES
+ FIXTURES_REQUIRED clear_h5repack
+ )
+ add_test (
+ NAME H5REPACK_DIFF-${testname}
+ COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:h5repack${tgt_file_ext}> --enable-error-stack ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}
+ )
+ set_tests_properties (H5REPACK_DIFF-${testname} PROPERTIES
+ DEPENDS H5REPACK_DIFF-${testname}-clear-objects
+ )
+ add_test (
+ NAME H5REPACK_DIFF-${testname}_DFF
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5diff${tgt_file_ext}>"
+ -D "TEST_ARGS:STRING=-v;--enable-error-stack;${testfile};out-${testname}.${testfile}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles"
+ -D "TEST_OUTPUT=out-${testname}.${testfile}.out"
+ -D "TEST_EXPECT=${resultcode}"
+ -D "TEST_REFERENCE=${testname}.${testfile}.tst"
+ -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
+ )
+ set_tests_properties (H5REPACK_DIFF-${testname}_DFF PROPERTIES
+ DEPENDS H5REPACK_DIFF-${testname}
+ )
+ endif ()
+ endmacro ()
+
macro (ADD_H5_STAT_TEST testname testtype resultcode statarg resultfile)
if ("${testtype}" STREQUAL "SKIP")
if (NOT HDF5_ENABLE_USING_MEMCHECKER)
@@ -1148,7 +1218,7 @@
if (NOT USE_FILTER_DEFLATE)
set (TESTTYPE "SKIP")
endif ()
- ADD_H5_CMP_TEST (gzip_verbose_filters "O?...ing file[^\n]+\n" ${TESTTYPE} 0 ${arg})
+ ADD_H5_FILTER_TEST (gzip_verbose_filters "O?...ing file[^\n]+\n" ${TESTTYPE} 0 ${arg})
###########################################################
# the following tests assume the input files have filters
@@ -1540,6 +1610,45 @@ ADD_H5_EXTERNAL_TEST (ext_int32le_3d "TEST" int32le_3d -l CONTI)
ADD_H5_EXTERNAL_TEST (ext_uint8be "TEST" uint8be -l CONTI)
##############################################################################
+### E X T E R N A L L I N K T E S T S
+##############################################################################
+### HDFFV-11128 needs fixed to enable the following test
+#ADD_H5_DMP_TEST (h5copy_extlinks_src-base "TEST" 0 h5copy_extlinks_src.h5 --enable-error-stack)
+ADD_H5_DMP_TEST (tsoftlinks-base "TEST" 0 tsoftlinks.h5 --enable-error-stack)
+ADD_H5_DMP_TEST (textlink-base "TEST" 0 textlink.h5 --enable-error-stack)
+ADD_H5_DMP_TEST (textlinkfar-base "TEST" 0 textlinkfar.h5 --enable-error-stack)
+ADD_H5_DMP_TEST (textlinksrc-base "TEST" 0 textlinksrc.h5 --enable-error-stack)
+ADD_H5_DMP_TEST (textlinktar-base "TEST" 0 textlinktar.h5 --enable-error-stack)
+
+### HDFFV-11128 needs fixed to enable the following test
+#ADD_H5_DIFF_TEST (textlinksrc-merge "TEST" 1 textlinksrc.h5 --merge)
+ADD_H5_DIFF_TEST (tsoftlinks-merge "TEST" 1 tsoftlinks.h5 --merge)
+ADD_H5_DIFF_TEST (textlink-merge "TEST" 0 textlink.h5 --merge)
+### HDFFV-11128 needs fixed to enable the following test
+#ADD_H5_DIFF_TEST (textlinkfar-merge "TEST" 1 textlinkfar.h5 --merge)
+### HDFFV-11128 needs fixed to enable the following test
+#ADD_H5_DIFF_TEST (textlinktar-merge "TEST" 1 textlinktar.h5 --merge)
+### HDFFV-11128 needs fixed to enable the following test
+#ADD_H5_DIFF_TEST (h5copy_extlinks_src-merge "TEST" 0 h5copy_extlinks_src.h5 --merge)
+
+ADD_H5_DMP_TEST (h5copy_extlinks_src-prune "TEST" 0 h5copy_extlinks_src.h5 --prune --enable-error-stack)
+ADD_H5_DMP_TEST (tsoftlinks-prune "TEST" 0 tsoftlinks.h5 --prune --enable-error-stack)
+ADD_H5_DMP_TEST (textlink-prune "TEST" 0 textlink.h5 --prune --enable-error-stack)
+ADD_H5_DMP_TEST (textlinkfar-prune "TEST" 0 textlinkfar.h5 --prune --enable-error-stack)
+ADD_H5_DMP_TEST (textlinksrc-prune "TEST" 0 textlinksrc.h5 --prune --enable-error-stack)
+ADD_H5_DMP_TEST (textlinktar-prune "TEST" 0 textlinktar.h5 --prune --enable-error-stack)
+
+ADD_H5_DMP_TEST (h5copy_extlinks_src-mergeprune "TEST" 0 h5copy_extlinks_src.h5 --merge --prune --enable-error-stack)
+ADD_H5_DMP_TEST (tsoftlinks-mergeprune "TEST" 0 tsoftlinks.h5 --merge --prune --enable-error-stack)
+ADD_H5_DMP_TEST (textlink-mergeprune "TEST" 0 textlink.h5 --merge --prune --enable-error-stack)
+### HDFFV-11128 needs fixed to enable the following test
+#ADD_H5_DMP_TEST (textlinkfar-mergeprune "TEST" 0 textlinkfar.h5 --merge --prune --enable-error-stack)
+### HDFFV-11128 needs fixed to enable the following test
+#ADD_H5_DMP_TEST (textlinksrc-mergeprune "TEST" 0 textlinksrc.h5 --merge --prune --enable-error-stack)
+### HDFFV-11128 needs fixed to enable the following test
+#ADD_H5_DMP_TEST (textlinktar-mergeprune "TEST" 0 textlinktar.h5 --merge --prune --enable-error-stack)
+
+##############################################################################
### P L U G I N T E S T S
##############################################################################
if (BUILD_SHARED_LIBS)
diff --git a/tools/test/h5repack/h5repack.sh.in b/tools/test/h5repack/h5repack.sh.in
index ad6fef8..3d4e0ea 100644
--- a/tools/test/h5repack/h5repack.sh.in
+++ b/tools/test/h5repack/h5repack.sh.in
@@ -92,10 +92,18 @@ $SRC_H5REPACK_TESTFILES/h5repack_attr_refs.h5
$SRC_H5REPACK_TESTFILES/h5repack_deflate.h5
$SRC_H5REPACK_TESTFILES/h5repack_early.h5
$SRC_H5REPACK_TESTFILES/h5repack_ext.h5
+$SRC_H5REPACK_TESTFILES/h5repack_f32le.h5
+$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex.h5
$SRC_H5REPACK_TESTFILES/h5repack_fill.h5
$SRC_H5REPACK_TESTFILES/h5repack_filters.h5
$SRC_H5REPACK_TESTFILES/h5repack_fletcher.h5
$SRC_H5REPACK_TESTFILES/h5repack_hlink.h5
+$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d.h5
+$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex.h5
+$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d.h5
+$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex.h5
+$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d.h5
+$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex.h5
$SRC_H5REPACK_TESTFILES/h5repack_layout.h5
$SRC_H5REPACK_TESTFILES/h5repack_layouto.h5
$SRC_H5REPACK_TESTFILES/h5repack_layout2.h5
@@ -109,23 +117,26 @@ $SRC_H5REPACK_TESTFILES/h5repack_refs.h5
$SRC_H5REPACK_TESTFILES/h5repack_shuffle.h5
$SRC_H5REPACK_TESTFILES/h5repack_soffset.h5
$SRC_H5REPACK_TESTFILES/h5repack_szip.h5
+$SRC_H5REPACK_TESTFILES/h5repack_uint8be.h5
+$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex.h5
+########fsm#files########
$SRC_H5REPACK_TESTFILES/h5repack_aggr.h5
$SRC_H5REPACK_TESTFILES/h5repack_fsm_aggr_nopersist.h5
$SRC_H5REPACK_TESTFILES/h5repack_fsm_aggr_persist.h5
$SRC_H5REPACK_TESTFILES/h5repack_none.h5
$SRC_H5REPACK_TESTFILES/h5repack_paged_nopersist.h5
$SRC_H5REPACK_TESTFILES/h5repack_paged_persist.h5
-$SRC_H5REPACK_TESTFILES/h5repack_f32le.h5
-$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex.h5
-$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d.h5
-$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex.h5
-$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d.h5
-$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex.h5
-$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d.h5
-$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex.h5
-$SRC_H5REPACK_TESTFILES/h5repack_uint8be.h5
-$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex.h5
+########h5diff/testfile########
$SRC_H5DIFF_TESTFILES/h5diff_attr1.h5
+########tools/testfiles#for#external#links########
+$SRC_TOOLS_TESTFILES/tsoftlinks.h5
+$SRC_TOOLS_TESTFILES/textlinkfar.h5
+$SRC_TOOLS_TESTFILES/textlinksrc.h5
+$SRC_TOOLS_TESTFILES/textlinktar.h5
+$SRC_TOOLS_TESTFILES/textlink.h5
+$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src.h5
+$SRC_H5REPACK_TESTFILES/h5copy_extlinks_trg.h5
+########tools/testfiles########
$SRC_TOOLS_TESTFILES/tfamily00000.h5
$SRC_TOOLS_TESTFILES/tfamily00001.h5
$SRC_TOOLS_TESTFILES/tfamily00002.h5
@@ -138,6 +149,8 @@ $SRC_TOOLS_TESTFILES/tfamily00008.h5
$SRC_TOOLS_TESTFILES/tfamily00009.h5
$SRC_TOOLS_TESTFILES/tfamily00010.h5
$SRC_TOOLS_TESTFILES/tordergr.h5
+########reference#conversion#files########
+########tools/testfiles/vds########
$SRC_TOOLS_TESTFILES/vds/1_a.h5
$SRC_TOOLS_TESTFILES/vds/1_b.h5
$SRC_TOOLS_TESTFILES/vds/1_c.h5
@@ -168,33 +181,61 @@ $SRC_H5REPACK_TESTFILES/h5repack-help.txt
$SRC_H5REPACK_TESTFILES/h5repack_ext.bin
$SRC_H5REPACK_TESTFILES/ublock.bin
$SRC_H5REPACK_TESTFILES/h5repack.info
-$SRC_H5REPACK_TESTFILES/crtorder.tordergr.h5.ddl
-$SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl
+########dat#files########
$SRC_H5REPACK_TESTFILES/h5repack_f32le_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_int32le_1d_ex-1.dat
$SRC_H5REPACK_TESTFILES/h5repack_int32le_2d_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_int32le_3d_ex-0.dat
-$SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl
-$SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst
-$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst
-$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-0.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-1.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-2.dat
$SRC_H5REPACK_TESTFILES/h5repack_uint8be_ex-3.dat
-$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst
-$SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl
-$SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl
-$SRC_H5REPACK_TESTFILES/3_1_vds.h5-vds_chunk2x5x8-v.ddl
-$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_compa-v.ddl
-$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_conti-v.ddl
+###############
+$SRC_H5REPACK_TESTFILES/crtorder.tordergr.h5.ddl
+$SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl
+$SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl
+$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl
+########fsm#files########
$SRC_H5REPACK_TESTFILES/SP.h5repack_fsm_aggr_nopersist.h5.ddl
$SRC_H5REPACK_TESTFILES/S.h5repack_fsm_aggr_persist.h5.ddl
$SRC_H5REPACK_TESTFILES/STG.h5repack_none.h5.ddl
$SRC_H5REPACK_TESTFILES/GS.h5repack_paged_nopersist.h5.ddl
$SRC_H5REPACK_TESTFILES/SP.h5repack_paged_persist.h5.ddl
$SRC_H5REPACK_TESTFILES/SPT.h5repack_aggr.h5.ddl
+########vds#files########
+$SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl
+$SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl
+$SRC_H5REPACK_TESTFILES/3_1_vds.h5-vds_chunk2x5x8-v.ddl
+$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_compa-v.ddl
+$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_conti-v.ddl
+########refs#files########
+$SRC_H5REPACK_TESTFILES/attrregion.tattrreg.h5.ddl
+$SRC_H5REPACK_TESTFILES/dataregion.tdatareg.h5.ddl
+########external#links#files########
+$SRC_H5REPACK_TESTFILES/textlinkfar-prune.textlinkfar.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlinksrc-prune.textlinksrc.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlinktar-prune.textlinktar.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlink-prune.textlink.h5.ddl
+$SRC_H5REPACK_TESTFILES/tsoftlinks-prune.tsoftlinks.h5.ddl
+$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlinkfar-mergeprune.textlinkfar.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlinksrc-mergeprune.textlinksrc.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlinktar-mergeprune.textlinktar.h5.ddl
+$SRC_H5REPACK_TESTFILES/textlink-mergeprune.textlink.h5.ddl
+$SRC_H5REPACK_TESTFILES/tsoftlinks-mergeprune.tsoftlinks.h5.ddl
+$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl
+########tst#files########
+$SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst
+$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst
+$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst
+########external#links#tst#files########
+$SRC_H5REPACK_TESTFILES/tsoftlinks-merge.tsoftlinks.h5.tst
+$SRC_H5REPACK_TESTFILES/textlinkfar-merge.textlinkfar.h5.tst
+$SRC_H5REPACK_TESTFILES/textlinksrc-merge.textlinksrc.h5.tst
+$SRC_H5REPACK_TESTFILES/textlinktar-merge.textlinktar.h5.tst
+$SRC_H5REPACK_TESTFILES/textlink-merge.textlink.h5.tst
+$SRC_H5REPACK_TESTFILES/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst
"
#
@@ -271,6 +312,12 @@ SKIP() {
echo " -SKIP-"
}
+##############################################################################
+##############################################################################
+### T H E T E S T S M A C R O S ###
+##############################################################################
+##############################################################################
+
# Call the h5diff tool
#
DIFFTEST()
@@ -619,25 +666,6 @@ VERIFY_INVALIDBOUNDS()
} # end of VERIFY_INVALIDBOUNDS
# -----------------------------------------------------------------------------
-# Expect h5diff to fail
-# -----------------------------------------------------------------------------
-DIFFFAIL()
-{
- VERIFY h5diff unequal $@
- (
- cd $TESTDIR
- $RUNSERIAL $H5DIFF_BIN -q "$@"
- )
- RET=$?
- if [ $RET == 0 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
- else
- echo " PASSED"
- fi
-}
-
-# -----------------------------------------------------------------------------
# Catchall test for repacking with external files
# Loops over all (internally-listed) cases and applies the given arguments
# to h5repack.
@@ -805,6 +833,121 @@ TOOLTESTV()
rm -f $outfile
}
+# This is same as TOOLTESTV() with comparing display output
+# with actual filename swapped
+#
+TOOLTESTSV()
+{
+ expect="$TESTDIR/$1.$2.tst"
+ actual="$TESTDIR/`basename $2 .ddl`.out"
+ actual_err="$TESTDIR/`basename $2 .ddl`.err"
+
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ ) >$actual 2>$actual_err
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ VERIFY h5diff unequal $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5DIFF_BIN -v $infile $outfile
+ ) >$actual 2>$actual_err
+ RET=$?
+ if [ $RET == 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+ fi
+
+ # display output compare
+ STDOUT_FILTER $actual
+ cat $actual_err >> $actual
+
+ VERIFY output from $H5REPACK $@
+ if cmp -s $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.tst) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
+ fi
+
+ rm -f $actual $actual_err
+ rm -f $outfile
+}
+
+# This is same as TOOLTESTSV() but expects a diff fail
+#
+TOOLFAILSV()
+{
+ expect="$TESTDIR/$1.$2.tst"
+ actual="$TESTDIR/`basename $2 .ddl`.out"
+ actual_err="$TESTDIR/`basename $2 .ddl`.err"
+
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ ) >$actual 2>$actual_err
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ VERIFY h5diff unequal $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5DIFF_BIN -v $infile $outfile
+ ) >$actual 2>$actual_err
+ RET=$?
+ if [ $RET == 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+ fi
+
+ # display output compare
+ STDOUT_FILTER $actual
+ cat $actual_err >> $actual
+
+ VERIFY output from $H5REPACK $@
+ if cmp -s $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.tst) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
+ fi
+
+ rm -f $actual $actual_err
+ rm -f $outfile
+}
+
# same as TOOLTESTV but filters error stack output and compares to an error file
# Extract file name, line number, version and thread IDs because they may be different
# ADD_H5ERR_MASK_TEST
@@ -1356,44 +1499,28 @@ TOOLTEST_STAT SPT $arg
# layout options (these files have no filters)
#########################################################
VERIFY_LAYOUT_DSET dset2_chunk_20x10 h5repack_layout.h5 dset2 CHUNKED --layout dset2:CHUNK=20x10
-
VERIFY_LAYOUT_ALL chunk_20x10 h5repack_layout.h5 CHUNKED -l CHUNK=20x10
-
VERIFY_LAYOUT_DSET dset2_conti h5repack_layout.h5 dset2 CONTIGUOUS -l dset2:CONTI
-
VERIFY_LAYOUT_ALL conti h5repack_layout.h5 CONTIGUOUS -l CONTI
-
VERIFY_LAYOUT_DSET dset2_compa h5repack_layout.h5 dset2 COMPACT -l dset2:COMPA
-
VERIFY_LAYOUT_ALL compa h5repack_layout.h5 COMPACT -l COMPA
-
TOOLTESTM dset2_chunk_20x10-errstk h5repack_layout.h5 --layout=dset2:CHUNK=20x10x5 --enable-error-stack
################################################################
# layout conversions (file has no filters)
###############################################################
-
VERIFY_LAYOUT_DSET dset_compa_conti h5repack_layout.h5 dset_compact CONTIGUOUS -l dset_compact:CONTI
-
VERIFY_LAYOUT_DSET dset_compa_chunk h5repack_layout.h5 dset_compact CHUNKED -l dset_compact:CHUNK=2x5
-
VERIFY_LAYOUT_DSET dset_compa_compa h5repack_layout.h5 dset_compact COMPACT -l dset_compact:COMPA
-
VERIFY_LAYOUT_DSET dset_conti_compa h5repack_layout.h5 dset_contiguous COMPACT -l dset_contiguous:COMPA
-
VERIFY_LAYOUT_DSET dset_conti_chunk h5repack_layout.h5 dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6
-
VERIFY_LAYOUT_DSET dset_conti_conti h5repack_layout.h5 dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI
-
VERIFY_LAYOUT_DSET chunk_compa h5repack_layout.h5 dset_chunk COMPACT -l dset_chunk:COMPA
-
VERIFY_LAYOUT_DSET chunk_conti h5repack_layout.h5 dset_chunk CONTIGUOUS -l dset_chunk:CONTI
-
VERIFY_LAYOUT_DSET chunk_18x13 h5repack_layout.h5 dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13
# test convert small size dataset ( < 1k) to compact layout without -m
VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -l contig_small:COMPA
-
VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA
#---------------------------------------------------------------------------
@@ -1421,6 +1548,7 @@ VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk
# chunk dim is bigger than dataset dim. ( dset size < 64k )
VERIFY_LAYOUT_DSET error1 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE
# chunk dim is bigger than dataset dim. ( dset size > 64k )
+
VERIFY_LAYOUT_DSET error2 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE
# chunk dims are smaller than dataset dims. ( dset size < 64k )
@@ -1435,7 +1563,6 @@ TOOLTEST error4 h5repack_layout3.h5 -f NONE
# (dset size < 64K) and with unlimited max dims on a condition as follow.
# (HDFFV-8214)
#--------------------------------------------------------------------------
-
# chunk dim is bigger than dataset dim. should succeed.
VERIFY_LAYOUT_DSET ckdim_biger h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI
# chunk dim is smaller than dataset dim. should succeed.
@@ -1466,7 +1593,6 @@ else
fi
# several global filters
-
arg="h5repack_layout.h5 --filter GZIP=1 --filter SHUF"
if test $USE_FILTER_DEFLATE != "yes" ; then
SKIP $arg
@@ -1562,9 +1688,15 @@ else
VERIFY_LAYOUT_VDS vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
fi
-#########################################################
-# Testing version bounds
-#########################################################
+################################################################
+# reference new api conversions
+###############################################################
+#TOOLTEST_DUMP attrregion tattrreg.h5
+#TOOLTEST_DUMP dataregion tdatareg.h5
+
+##############################################################################
+### V E R S I O N B O U N D S T E S T S
+##############################################################################
# -j 0 -k 2, superblock will be 0
VERIFY_SUPERBLOCK 0 2 0 h5repack_layout.h5 -j 0 -k 2 h5repack_layout.h5
# -j 1 -k 2, superblock will be 2
@@ -1574,11 +1706,49 @@ VERIFY_SUPERBLOCK 2 2 3 h5repack_layout.h5 -j 2 -k 2 h5repack_layout.h5
# -j 0 -k 1, file cannot be opened
VERIFY_INVALIDBOUNDS 0 1 bounds_latest_latest.h5
-########################################
-# Testing external storage
-########################################
+##############################################################################
+### E X T E R N A L S T O R A G E T E S T S
+##############################################################################
VERIFY_EXTERNAL_CONSOLIDATION -l CONTI
+##############################################################################
+### E X T E R N A L L I N K T E S T S
+##############################################################################
+### HDFFV-11128 needs fixed to enable the following test
+#TOOLTEST_DUMP h5copy_extlinks_src-base h5copy_extlinks_src.h5 --enable-error-stack
+TOOLTEST_DUMP tsoftlinks-base tsoftlinks.h5 --enable-error-stack
+TOOLTEST_DUMP textlink-base textlink.h5 --enable-error-stack
+TOOLTEST_DUMP textlinkfar-base textlinkfar.h5 --enable-error-stack
+TOOLTEST_DUMP textlinksrc-base textlinksrc.h5 --enable-error-stack
+TOOLTEST_DUMP textlinktar-base textlinktar.h5 --enable-error-stack
+
+TOOLTESTSV h5copy_extlinks_src-merge h5copy_extlinks_src.h5 --merge
+TOOLFAILSV tsoftlinks-merge tsoftlinks.h5 --merge
+TOOLTESTSV textlink-merge textlink.h5 --merge
+### HDFFV-11128 needs fixed to enable the following test
+#TOOLFAILSV textlinkfar-merge textlinkfar.h5 --merge
+### HDFFV-11128 needs fixed to enable the following test
+#TOOLFAILSV textlinksrc-merge textlinksrc.h5 --merge
+### HDFFV-11128 needs fixed to enable the following test
+#TOOLFAILSV textlinktar-merge textlinktar.h5 --merge
+
+TOOLTEST_DUMP h5copy_extlinks_src-prune h5copy_extlinks_src.h5 --prune --enable-error-stack
+TOOLTEST_DUMP tsoftlinks-prune tsoftlinks.h5 --prune --enable-error-stack
+TOOLTEST_DUMP textlink-prune textlink.h5 --prune --enable-error-stack
+TOOLTEST_DUMP textlinkfar-prune textlinkfar.h5 --prune --enable-error-stack
+TOOLTEST_DUMP textlinksrc-prune textlinksrc.h5 --prune --enable-error-stack
+TOOLTEST_DUMP textlinktar-prune textlinktar.h5 --prune --enable-error-stack
+
+TOOLTEST_DUMP h5copy_extlinks_src-mergeprune h5copy_extlinks_src.h5 --merge --prune --enable-error-stack
+TOOLTEST_DUMP tsoftlinks-mergeprune tsoftlinks.h5 --merge --prune --enable-error-stack
+TOOLTEST_DUMP textlink-mergeprune textlink.h5 --merge --prune --enable-error-stack
+### HDFFV-11128 needs fixed to enable the following test
+#TOOLTEST_DUMP textlinkfar-mergeprune textlinkfar.h5 --merge --prune --enable-error-stack
+### HDFFV-11128 needs fixed to enable the following test
+#TOOLTEST_DUMP textlinksrc-mergeprune textlinksrc.h5 --merge --prune --enable-error-stack
+### HDFFV-11128 needs fixed to enable the following test
+#TOOLTEST_DUMP textlinktar-mergeprune textlinktar.h5 --merge --prune --enable-error-stack
+
# Clean up temporary files/directories
CLEAN_TESTFILES_AND_TESTDIR
diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst b/tools/test/h5repack/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst
new file mode 100644
index 0000000..52f215d
--- /dev/null
+++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst
@@ -0,0 +1,26 @@
+
+file1 file2
+---------------------------------------
+ x x /
+ x x /group_ext
+ x x /group_ext/extlink_datatype
+ x x /group_ext/extlink_dset
+ x x /group_ext/extlink_grp
+ x x /group_ext/extlink_notyet1
+ x x /group_ext/extlink_notyet2
+
+group : </> and </>
+0 differences found
+group : </group_ext> and </group_ext>
+0 differences found
+Not comparable: </group_ext/extlink_datatype> is of type H5G_UDLINK and </group_ext/extlink_datatype> is of type H5G_TYPE
+Not comparable: </group_ext/extlink_dset> is of type H5G_UDLINK and </group_ext/extlink_dset> is of type H5G_DATASET
+Not comparable: </group_ext/extlink_grp> is of type H5G_UDLINK and </group_ext/extlink_grp> is of type H5G_GROUP
+external link: </group_ext/extlink_notyet1> and </group_ext/extlink_notyet1>
+0 differences found
+external link: </group_ext/extlink_notyet2> and </group_ext/extlink_notyet2>
+0 differences found
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects without details of differences.
diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl b/tools/test/h5repack/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl
new file mode 100644
index 0000000..ad8a320
--- /dev/null
+++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl
@@ -0,0 +1,28 @@
+HDF5 "out-h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5" {
+GROUP "/" {
+ GROUP "group_ext" {
+ DATATYPE "extlink_datatype" H5T_STD_I32LE;
+ DATASET "extlink_dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 2200
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ GROUP "extlink_grp" {
+ }
+ }
+}
+}
diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl b/tools/test/h5repack/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl
new file mode 100644
index 0000000..b7d7bca
--- /dev/null
+++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl
@@ -0,0 +1,6 @@
+HDF5 "out-h5copy_extlinks_src-prune.h5copy_extlinks_src.h5" {
+GROUP "/" {
+ GROUP "group_ext" {
+ }
+}
+}
diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_src.h5 b/tools/test/h5repack/testfiles/h5copy_extlinks_src.h5
new file mode 100644
index 0000000..7b8621e
--- /dev/null
+++ b/tools/test/h5repack/testfiles/h5copy_extlinks_src.h5
Binary files differ
diff --git a/tools/test/h5repack/testfiles/h5copy_extlinks_trg.h5 b/tools/test/h5repack/testfiles/h5copy_extlinks_trg.h5
new file mode 100644
index 0000000..3a0242d
--- /dev/null
+++ b/tools/test/h5repack/testfiles/h5copy_extlinks_trg.h5
Binary files differ
diff --git a/tools/test/h5repack/testfiles/h5repack-help.txt b/tools/test/h5repack/testfiles/h5repack-help.txt
index 00fae24..e12838d 100644
--- a/tools/test/h5repack/testfiles/h5repack-help.txt
+++ b/tools/test/h5repack/testfiles/h5repack-help.txt
@@ -29,6 +29,9 @@ usage: h5repack [OPTIONS] file1 file2
--high=BOUND The high bound for library release versions to use
when creating objects in the file
(default is H5F_LIBVER_LATEST)
+ --merge Follow external soft link recursively and merge data
+ --prune Do not follow external soft links and remove link
+ --merge --prune Follow external link, merge data and remove dangling link
-c L1, --compact=L1 Maximum number of links in header messages
-d L2, --indexed=L2 Minimum number of links in the indexed format
-s S[:F], --ssize=S[:F] Shared object header message minimum size
diff --git a/tools/test/h5repack/testfiles/textlink-merge.textlink.h5.tst b/tools/test/h5repack/testfiles/textlink-merge.textlink.h5.tst
new file mode 100644
index 0000000..a7ff71d
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlink-merge.textlink.h5.tst
@@ -0,0 +1,13 @@
+
+file1 file2
+---------------------------------------
+ x x /
+ x x /extlink1
+ x x /extlink2
+
+group : </> and </>
+0 differences found
+external link: </extlink1> and </extlink1>
+0 differences found
+external link: </extlink2> and </extlink2>
+0 differences found
diff --git a/tools/test/h5repack/testfiles/textlink-mergeprune.textlink.h5.ddl b/tools/test/h5repack/testfiles/textlink-mergeprune.textlink.h5.ddl
new file mode 100644
index 0000000..7206ae9
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlink-mergeprune.textlink.h5.ddl
@@ -0,0 +1,4 @@
+HDF5 "out-textlink-mergeprune.textlink.h5" {
+GROUP "/" {
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlink-prune.textlink.h5.ddl b/tools/test/h5repack/testfiles/textlink-prune.textlink.h5.ddl
new file mode 100644
index 0000000..83db344
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlink-prune.textlink.h5.ddl
@@ -0,0 +1,4 @@
+HDF5 "out-textlink-prune.textlink.h5" {
+GROUP "/" {
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinkfar-merge.textlinkfar.h5.tst b/tools/test/h5repack/testfiles/textlinkfar-merge.textlinkfar.h5.tst
new file mode 100644
index 0000000..6673d39
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinkfar-merge.textlinkfar.h5.tst
@@ -0,0 +1,20 @@
+
+file1 file2
+---------------------------------------
+ x x /
+ x x /src_file
+ x /src_file/ext2soft_link1
+ x /src_file/ext2softdangle_link1
+ x /src_file/ext_link1
+ x /src_file/ext_link2
+ x /src_file/ext_link3
+ x /src_file/ext_link4
+ x /src_file/ext_link5
+
+group : </> and </>
+0 differences found
+Not comparable: </src_file> is of type H5G_UDLINK and </src_file> is of type H5G_GROUP
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects without details of differences.
diff --git a/tools/test/h5repack/testfiles/textlinkfar-mergeprune.textlinkfar.h5.ddl b/tools/test/h5repack/testfiles/textlinkfar-mergeprune.textlinkfar.h5.ddl
new file mode 100644
index 0000000..7ba3308
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinkfar-mergeprune.textlinkfar.h5.ddl
@@ -0,0 +1,152 @@
+HDF5 "out-textlinkfar-mergeprune.textlinkfar.h5" {
+GROUP "/" {
+ GROUP "src_file" {
+ EXTERNAL_LINK "ext2soft_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dset1"
+ DATASET "/soft_dset1" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2848
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ }
+ EXTERNAL_LINK "ext2softdangle_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dangle"
+ }
+ EXTERNAL_LINK "ext_link1" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group"
+ GROUP "group" {
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 3136
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ EXTERNAL_LINK "elink_t1" {
+ TARGETFILE "textlinksrc.h5"
+ TARGETPATH "/"
+ GROUP "/" {
+ EXTERNAL_LINK "ext2soft_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dset1"
+ DATASET "/soft_dset1" {
+ HARDLINK "/dset1"
+ }
+ }
+ EXTERNAL_LINK "ext2softdangle_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dangle"
+ }
+ EXTERNAL_LINK "ext_link1" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group"
+ GROUP "group" {
+ HARDLINK "/group"
+ }
+ }
+ EXTERNAL_LINK "ext_link2" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "dset"
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 3160
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ }
+ EXTERNAL_LINK "ext_link3" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "type"
+ DATATYPE "type" H5T_STD_I32LE;
+ }
+ EXTERNAL_LINK "ext_link4" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group/elink_t2"
+ }
+ EXTERNAL_LINK "ext_link5" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "empty_group"
+ GROUP "empty_group" {
+ }
+ }
+ }
+ }
+ EXTERNAL_LINK "elink_t2" {
+ TARGETFILE "textlinksrc.h5"
+ TARGETPATH "/ext_link4"
+ }
+ GROUP "subgroup" {
+ GROUP "link_to_group" {
+ HARDLINK "/group"
+ }
+ }
+ }
+ }
+ EXTERNAL_LINK "ext_link2" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "dset"
+ DATASET "dset" {
+ HARDLINK "/dset"
+ }
+ }
+ EXTERNAL_LINK "ext_link3" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "type"
+ DATATYPE "type" HARDLINK "/type"
+ }
+ EXTERNAL_LINK "ext_link4" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group/elink_t2"
+ }
+ EXTERNAL_LINK "ext_link5" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "empty_group"
+ GROUP "empty_group" {
+ HARDLINK "/empty_group"
+ }
+ }
+ }
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinkfar-prune.textlinkfar.h5.ddl b/tools/test/h5repack/testfiles/textlinkfar-prune.textlinkfar.h5.ddl
new file mode 100644
index 0000000..30f8f1b
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinkfar-prune.textlinkfar.h5.ddl
@@ -0,0 +1,4 @@
+HDF5 "out-textlinkfar-prune.textlinkfar.h5" {
+GROUP "/" {
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinksrc-merge.textlinksrc.h5.tst b/tools/test/h5repack/testfiles/textlinksrc-merge.textlinksrc.h5.tst
new file mode 100644
index 0000000..d5a5902
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinksrc-merge.textlinksrc.h5.tst
@@ -0,0 +1,32 @@
+
+file1 file2
+---------------------------------------
+ x x /
+ x x /ext2soft_link1
+ x x /ext2softdangle_link1
+ x x /ext_link1
+ x /ext_link1/dset
+ x /ext_link1/elink_t1
+ x /ext_link1/elink_t2
+ x /ext_link1/subgroup
+ x /ext_link1/subgroup/link_to_group
+ x x /ext_link2
+ x x /ext_link3
+ x x /ext_link4
+ x x /ext_link5
+
+group : </> and </>
+0 differences found
+Not comparable: </ext2soft_link1> is of type H5G_UDLINK and </ext2soft_link1> is of type H5G_DATASET
+external link: </ext2softdangle_link1> and </ext2softdangle_link1>
+0 differences found
+Not comparable: </ext_link1> is of type H5G_UDLINK and </ext_link1> is of type H5G_GROUP
+Not comparable: </ext_link2> is of type H5G_UDLINK and </ext_link2> is of type H5G_DATASET
+Not comparable: </ext_link3> is of type H5G_UDLINK and </ext_link3> is of type H5G_TYPE
+external link: </ext_link4> and </ext_link4>
+0 differences found
+Not comparable: </ext_link5> is of type H5G_UDLINK and </ext_link5> is of type H5G_GROUP
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects without details of differences.
diff --git a/tools/test/h5repack/testfiles/textlinksrc-mergeprune.textlinksrc.h5.ddl b/tools/test/h5repack/testfiles/textlinksrc-mergeprune.textlinksrc.h5.ddl
new file mode 100644
index 0000000..5b3c740
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinksrc-mergeprune.textlinksrc.h5.ddl
@@ -0,0 +1,187 @@
+HDF5 "out-textlinksrc-mergeprune.textlinksrc.h5" {
+GROUP "/" {
+ DATASET "ext2soft_link1" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2048
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ GROUP "ext_link1" {
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 2080
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ EXTERNAL_LINK "elink_t1" {
+ TARGETFILE "textlinksrc.h5"
+ TARGETPATH "/"
+ GROUP "/" {
+ EXTERNAL_LINK "ext2soft_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dset1"
+ DATASET "/soft_dset1" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2848
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ }
+ EXTERNAL_LINK "ext2softdangle_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dangle"
+ }
+ EXTERNAL_LINK "ext_link1" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group"
+ GROUP "group" {
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 3136
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ EXTERNAL_LINK "elink_t1" {
+ TARGETFILE "textlinksrc.h5"
+ TARGETPATH "/"
+ GROUP "/" {
+ HARDLINK "/"
+ }
+ }
+ EXTERNAL_LINK "elink_t2" {
+ TARGETFILE "textlinksrc.h5"
+ TARGETPATH "/ext_link4"
+ }
+ GROUP "subgroup" {
+ GROUP "link_to_group" {
+ HARDLINK "/group"
+ }
+ }
+ }
+ }
+ EXTERNAL_LINK "ext_link2" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "dset"
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 3160
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ }
+ EXTERNAL_LINK "ext_link3" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "type"
+ DATATYPE "type" H5T_STD_I32LE;
+ }
+ EXTERNAL_LINK "ext_link4" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group/elink_t2"
+ }
+ EXTERNAL_LINK "ext_link5" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "empty_group"
+ GROUP "empty_group" {
+ }
+ }
+ }
+ }
+ EXTERNAL_LINK "elink_t2" {
+ TARGETFILE "textlinksrc.h5"
+ TARGETPATH "/ext_link4"
+ }
+ GROUP "subgroup" {
+ GROUP "link_to_group" {
+ HARDLINK "/ext_link1"
+ }
+ }
+ }
+ DATASET "ext_link2" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 2104
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ DATATYPE "ext_link3" H5T_STD_I32LE;
+ GROUP "ext_link5" {
+ }
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinksrc-prune.textlinksrc.h5.ddl b/tools/test/h5repack/testfiles/textlinksrc-prune.textlinksrc.h5.ddl
new file mode 100644
index 0000000..65d35ef
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinksrc-prune.textlinksrc.h5.ddl
@@ -0,0 +1,4 @@
+HDF5 "out-textlinksrc-prune.textlinksrc.h5" {
+GROUP "/" {
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinktar-merge.textlinktar.h5.tst b/tools/test/h5repack/testfiles/textlinktar-merge.textlinktar.h5.tst
new file mode 100644
index 0000000..ccf4f7b
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinktar-merge.textlinktar.h5.tst
@@ -0,0 +1,44 @@
+
+file1 file2
+---------------------------------------
+ x x /
+ x x /dset
+ x x /empty_group
+ x x /group
+ x x /group/dset
+ x x /group/elink_t1
+ x /group/elink_t1/ext2soft_link1
+ x /group/elink_t1/ext2softdangle_link1
+ x /group/elink_t1/ext_link1
+ x /group/elink_t1/ext_link2
+ x /group/elink_t1/ext_link3
+ x /group/elink_t1/ext_link4
+ x /group/elink_t1/ext_link5
+ x x /group/elink_t2
+ x x /group/subgroup
+ x x /group/subgroup/link_to_group
+ x x /type
+
+group : </> and </>
+0 differences found
+dataset: </dset> and </dset>
+0 differences found
+group : </empty_group> and </empty_group>
+0 differences found
+group : </group> and </group>
+0 differences found
+dataset: </group/dset> and </group/dset>
+0 differences found
+Not comparable: </group/elink_t1> is of type H5G_UDLINK and </group/elink_t1> is of type H5G_GROUP
+external link: </group/elink_t2> and </group/elink_t2>
+0 differences found
+group : </group/subgroup> and </group/subgroup>
+0 differences found
+group : </group/subgroup/link_to_group> and </group/subgroup/link_to_group>
+0 differences found
+datatype: </type> and </type>
+0 differences found
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects without details of differences.
diff --git a/tools/test/h5repack/testfiles/textlinktar-mergeprune.textlinktar.h5.ddl b/tools/test/h5repack/testfiles/textlinktar-mergeprune.textlinktar.h5.ddl
new file mode 100644
index 0000000..c52e34d
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinktar-mergeprune.textlinktar.h5.ddl
@@ -0,0 +1,200 @@
+HDF5 "out-textlinktar-mergeprune.textlinktar.h5" {
+GROUP "/" {
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 2048
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ GROUP "empty_group" {
+ }
+ GROUP "group" {
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 2072
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ GROUP "elink_t1" {
+ EXTERNAL_LINK "ext2soft_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dset1"
+ DATASET "/soft_dset1" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2848
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ }
+ EXTERNAL_LINK "ext2softdangle_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dangle"
+ }
+ EXTERNAL_LINK "ext_link1" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group"
+ GROUP "group" {
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 3136
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ EXTERNAL_LINK "elink_t1" {
+ TARGETFILE "textlinksrc.h5"
+ TARGETPATH "/"
+ GROUP "/" {
+ EXTERNAL_LINK "ext2soft_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dset1"
+ DATASET "/soft_dset1" {
+ HARDLINK "/dset1"
+ }
+ }
+ EXTERNAL_LINK "ext2softdangle_link1" {
+ TARGETFILE "tsoftlinks.h5"
+ TARGETPATH "/soft_dangle"
+ }
+ EXTERNAL_LINK "ext_link1" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group"
+ GROUP "group" {
+ HARDLINK "/group"
+ }
+ }
+ EXTERNAL_LINK "ext_link2" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "dset"
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 3160
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ }
+ EXTERNAL_LINK "ext_link3" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "type"
+ DATATYPE "type" H5T_STD_I32LE;
+ }
+ EXTERNAL_LINK "ext_link4" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group/elink_t2"
+ }
+ EXTERNAL_LINK "ext_link5" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "empty_group"
+ GROUP "empty_group" {
+ }
+ }
+ }
+ }
+ EXTERNAL_LINK "elink_t2" {
+ TARGETFILE "textlinksrc.h5"
+ TARGETPATH "/ext_link4"
+ }
+ GROUP "subgroup" {
+ GROUP "link_to_group" {
+ HARDLINK "/group"
+ }
+ }
+ }
+ }
+ EXTERNAL_LINK "ext_link2" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "dset"
+ DATASET "dset" {
+ HARDLINK "/dset"
+ }
+ }
+ EXTERNAL_LINK "ext_link3" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "type"
+ DATATYPE "type" HARDLINK "/type"
+ }
+ EXTERNAL_LINK "ext_link4" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "group/elink_t2"
+ }
+ EXTERNAL_LINK "ext_link5" {
+ TARGETFILE "textlinktar.h5"
+ TARGETPATH "empty_group"
+ GROUP "empty_group" {
+ HARDLINK "/empty_group"
+ }
+ }
+ }
+ GROUP "subgroup" {
+ GROUP "link_to_group" {
+ HARDLINK "/group"
+ }
+ }
+ }
+ DATATYPE "type" H5T_STD_I32LE;
+}
+}
diff --git a/tools/test/h5repack/testfiles/textlinktar-prune.textlinktar.h5.ddl b/tools/test/h5repack/testfiles/textlinktar-prune.textlinktar.h5.ddl
new file mode 100644
index 0000000..6787784
--- /dev/null
+++ b/tools/test/h5repack/testfiles/textlinktar-prune.textlinktar.h5.ddl
@@ -0,0 +1,52 @@
+HDF5 "out-textlinktar-prune.textlinktar.h5" {
+GROUP "/" {
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 2048
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ GROUP "empty_group" {
+ }
+ GROUP "group" {
+ DATASET "dset" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 6 ) / ( 6 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 24
+ OFFSET 2072
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ GROUP "subgroup" {
+ GROUP "link_to_group" {
+ HARDLINK "/group"
+ }
+ }
+ }
+ DATATYPE "type" H5T_STD_I32LE;
+}
+}
diff --git a/tools/test/h5repack/testfiles/tsoftlinks-merge.tsoftlinks.h5.tst b/tools/test/h5repack/testfiles/tsoftlinks-merge.tsoftlinks.h5.tst
new file mode 100644
index 0000000..27c33d7
--- /dev/null
+++ b/tools/test/h5repack/testfiles/tsoftlinks-merge.tsoftlinks.h5.tst
@@ -0,0 +1,53 @@
+
+file1 file2
+---------------------------------------
+ x x /
+ x x /dset1
+ x x /dset2
+ x x /dtype
+ x x /group1
+ x x /group1/soft_dangle
+ x x /group1/soft_dset1
+ x x /group1/soft_dset2
+ x x /group1/soft_dtype
+ x x /group1/soft_empty_grp
+ x x /group_empty
+ x x /soft_dangle
+ x x /soft_dset1
+ x x /soft_dtype
+ x x /soft_empty_grp
+ x x /soft_group1
+ x /soft_group1/soft_dangle
+ x /soft_group1/soft_dset1
+ x /soft_group1/soft_dset2
+ x /soft_group1/soft_dtype
+ x /soft_group1/soft_empty_grp
+
+group : </> and </>
+0 differences found
+dataset: </dset1> and </dset1>
+0 differences found
+dataset: </dset2> and </dset2>
+0 differences found
+datatype: </dtype> and </dtype>
+0 differences found
+group : </group1> and </group1>
+0 differences found
+link : </group1/soft_dangle> and </group1/soft_dangle>
+0 differences found
+Not comparable: </group1/soft_dset1> is of type H5G_LINK and </group1/soft_dset1> is of type H5G_DATASET
+Not comparable: </group1/soft_dset2> is of type H5G_LINK and </group1/soft_dset2> is of type H5G_DATASET
+Not comparable: </group1/soft_dtype> is of type H5G_LINK and </group1/soft_dtype> is of type H5G_TYPE
+Not comparable: </group1/soft_empty_grp> is of type H5G_LINK and </group1/soft_empty_grp> is of type H5G_GROUP
+group : </group_empty> and </group_empty>
+0 differences found
+link : </soft_dangle> and </soft_dangle>
+0 differences found
+Not comparable: </soft_dset1> is of type H5G_LINK and </soft_dset1> is of type H5G_DATASET
+Not comparable: </soft_dtype> is of type H5G_LINK and </soft_dtype> is of type H5G_TYPE
+Not comparable: </soft_empty_grp> is of type H5G_LINK and </soft_empty_grp> is of type H5G_GROUP
+Not comparable: </soft_group1> is of type H5G_LINK and </soft_group1> is of type H5G_GROUP
+--------------------------------
+Some objects are not comparable
+--------------------------------
+Use -c for a list of objects without details of differences.
diff --git a/tools/test/h5repack/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5.ddl b/tools/test/h5repack/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5.ddl
new file mode 100644
index 0000000..fa4e12d
--- /dev/null
+++ b/tools/test/h5repack/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5.ddl
@@ -0,0 +1,127 @@
+HDF5 "out-tsoftlinks-mergeprune.tsoftlinks.h5" {
+GROUP "/" {
+ DATASET "dset1" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2048
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ DATASET "dset2" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2080
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ DATATYPE "dtype" H5T_STD_I32BE;
+ GROUP "group1" {
+ DATASET "soft_dset1" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2112
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ DATASET "soft_dset2" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2144
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ DATATYPE "soft_dtype" H5T_STD_I32BE;
+ GROUP "soft_empty_grp" {
+ }
+ }
+ GROUP "group_empty" {
+ }
+ DATASET "soft_dset1" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2176
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ DATATYPE "soft_dtype" H5T_STD_I32BE;
+ GROUP "soft_empty_grp" {
+ }
+ GROUP "soft_group1" {
+ SOFTLINK "soft_dangle" {
+ LINKTARGET "not_yet"
+ }
+ SOFTLINK "soft_dset1" {
+ LINKTARGET "/dset1"
+ }
+ SOFTLINK "soft_dset2" {
+ LINKTARGET "/dset2"
+ }
+ SOFTLINK "soft_dtype" {
+ LINKTARGET "/dtype"
+ }
+ SOFTLINK "soft_empty_grp" {
+ LINKTARGET "/group_empty"
+ }
+ }
+}
+}
diff --git a/tools/test/h5repack/testfiles/tsoftlinks-prune.tsoftlinks.h5.ddl b/tools/test/h5repack/testfiles/tsoftlinks-prune.tsoftlinks.h5.ddl
new file mode 100644
index 0000000..de58ef2
--- /dev/null
+++ b/tools/test/h5repack/testfiles/tsoftlinks-prune.tsoftlinks.h5.ddl
@@ -0,0 +1,47 @@
+HDF5 "out-tsoftlinks-prune.tsoftlinks.h5" {
+GROUP "/" {
+ DATASET "dset1" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2048
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ DATASET "dset2" {
+ DATATYPE H5T_STD_I32BE
+ DATASPACE SIMPLE { ( 4, 2 ) / ( 4, 2 ) }
+ STORAGE_LAYOUT {
+ CONTIGUOUS
+ SIZE 32
+ OFFSET 2080
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE H5D_FILL_VALUE_DEFAULT
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ }
+ DATATYPE "dtype" H5T_STD_I32BE;
+ GROUP "group1" {
+ }
+ GROUP "group_empty" {
+ }
+}
+}