[svn-r27835] Description:

    Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)

41 files changed, 321 insertions, 13466 deletions

diff --git a/tools/Makefile.in b/tools/Makefile.in
deleted file mode 100644
index 50153ae..0000000
--- a/tools/Makefile.in
+++ /dev/null
@@ -1,1374 +0,0 @@
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-	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
-	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
-	    fi; \
-	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
-	  else \
-	    test -f "$(distdir)/$$file" \
-	    || cp -p $$d/$$file "$(distdir)/$$file" \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-	$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS) $(check_SCRIPTS)
-	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
-check: check-am
-all-am: Makefile $(PROGRAMS) all-local
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	if test -z '$(STRIP)'; then \
-	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	      install; \
-	else \
-	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
-	fi
-mostlyclean-generic:
-	-test -z "$(TEST_LOGS)" || rm -f $(TEST_LOGS)
-	-test -z "$(TEST_LOGS:.log=.trs)" || rm -f $(TEST_LOGS:.log=.trs)
-	-test -z "$(TEST_SUITE_LOG)" || rm -f $(TEST_SUITE_LOG)
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
-	clean-libtool mostlyclean-am
-
-distclean: distclean-am
-	-rm -rf ./$(DEPDIR)
-	-rm -f Makefile
-distclean-am: clean-am distclean-compile distclean-generic \
-	distclean-tags
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-html-am:
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-dvi-am:
-
-install-exec-am: install-binPROGRAMS
-
-install-html: install-html-am
-
-install-html-am:
-
-install-info: install-info-am
-
-install-info-am:
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-pdf-am:
-
-install-ps: install-ps-am
-
-install-ps-am:
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -rf ./$(DEPDIR)
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-compile mostlyclean-generic \
-	mostlyclean-libtool mostlyclean-local
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binPROGRAMS
-
-.MAKE: check-am install-am install-strip
-
-.PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \
-	check-am clean clean-binPROGRAMS clean-checkPROGRAMS \
-	clean-generic clean-libtool cscopelist-am ctags ctags-am \
-	distclean distclean-compile distclean-generic \
-	distclean-libtool distclean-tags distdir dvi dvi-am html \
-	html-am info info-am install install-am install-binPROGRAMS \
-	install-data install-data-am install-dvi install-dvi-am \
-	install-exec install-exec-am install-html install-html-am \
-	install-info install-info-am install-man install-pdf \
-	install-pdf-am install-ps install-ps-am install-strip \
-	installcheck installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-compile \
-	mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \
-	pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am \
-	uninstall-binPROGRAMS
-
-
-# List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
-# This tells the Makefiles that these targets are not files to be built but
-# commands that should be executed even if a file with the same name already
-# exists.
-.PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
-        build-tests check-clean check-install check-p check-s check-vfd \
-        install-doc lib progs tests uninstall-doc _exec_check-s _test help
-
-help:
-	@$(top_srcdir)/bin/makehelp
-
-# lib/progs/tests targets recurse into subdirectories. build-* targets
-# build files in this directory.
-build-lib: $(LIB)
-build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(chk_TESTS)
-
-# General rule for recursive building targets.
-# BUILT_SOURCES contain targets that need to be built before anything else
-# in the directory (e.g., for Fortran type detection)
-lib progs tests check-s check-p :: $(BUILT_SOURCES)
-	@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
-	@for d in X $(SUBDIRS); do                                             \
-	    if test $$d != X && test $$d != .; then                           \
-	        (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;     \
-	    fi;                                                               \
-	done
-
-# General rule for recursive cleaning targets.  Like the rule above,
-# but doesn't require building BUILT_SOURCES.
-check-clean ::
-	@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
-	@for d in X $(SUBDIRS); do                                             \
-	    if test $$d != X && test $$d != .; then                           \
-	        (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;     \
-	    fi;                                                               \
-	done
-
-# Tell Automake to build tests when the user types `make all' (this is
-# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
-# Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
-
-# make install-doc doesn't do anything outside of doc directory, but
-# Makefiles should recognize it.
-# UPDATE: docs no longer reside in this build tree, so this target
-# is depreciated.
-install-doc uninstall-doc:
-	@echo "Nothing to be done."
-
-# clean up files generated by tests so they can be re-run.
-build-check-clean:
-	$(RM) -rf $(CHECK_CLEANFILES)
-
-# run check-clean whenever mostlyclean is run
-mostlyclean-local: build-check-clean
-
-# check-install is just a synonym for installcheck
-check-install: installcheck
-
-# Run each test in order, passing $(TEST_FLAGS) to the program.
-# Since tests are done in a shell loop, "make -i" does apply inside it.
-# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
-# The timestamps give a rough idea how much time the tests use.
-#
-# Note that targets in chk_TESTS (defined above) will be built when the user
-# types 'make tests' or 'make check', but only programs in TEST_PROG,
-# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
-check-TESTS: test
-
-test _test:
-	@$(MAKE) build-check-s
-	@$(MAKE) build-check-p
-
-# Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
-	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
-	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@$(MAKE) $(AM_MAKEFLAGS) _exec_check-s
-	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
-	    echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH)
-
-# The dummy.chkexe here prevents the target from being
-# empty if there are no tests in the current directory.
-# $${log} is the log file.
-# $${tname} is the name of test.
-$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_:
-	@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \
-	   tname=$(@:.chkexe_=)$(EXEEXT);\
-	   log=$(@:.chkexe_=.chklog); \
-	   echo "============================"; \
-	   if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
-	      echo "No need to test $${tname} again."; \
-	   else \
-	      echo "============================" > $${log}; \
-	      if test "X$(FORTRAN_API)" = "Xyes"; then \
-	         echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
-	      else \
-	         echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
-	      echo "============================" >> $${log}; \
-	      srcdir="$(srcdir)" \
-	         $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \
-	         && touch $(@:.chkexe_=.chkexe) || \
-	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	fi
-
-# The dummysh.chkexe here prevents the target from being
-# empty if there are no tests in the current directory.
-# $${log} is the log file.
-# $${tname} is the name of test.
-$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
-	@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \
-	   cmd=$(@:.chkexe_=);\
-	   tname=`basename $$cmd`;\
-	   chkname=`basename $(@:.chkexe_=.chkexe)`;\
-	   log=`basename $(@:.chkexe_=.chklog)`; \
-	   echo "============================"; \
-	   if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
-	      echo "No need to test $${tname} again."; \
-	   else \
-	      echo "============================" > $${log}; \
-	      if test "X$(FORTRAN_API)" = "Xyes"; then \
-	         echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      else \
-	         echo "Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
-	      echo "============================" >> $${log}; \
-	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
-	      srcdir="$(srcdir)" \
-	         $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
-	         && touch $${chkname} || \
-	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	   echo "============================"; \
-	fi
-
-# Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@if test -n "$(TEST_PROG_PARA)"; then                                \
-	    echo "**** Hint ****";                                            \
-	    echo "Parallel test files reside in the current directory"        \
-	         "by default.";                                               \
-	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
-	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
-	    echo "    export HDF5_PARAPREFIX";                                \
-	    echo "    make check";                                            \
-	    echo "**** end of Hint ****";                                     \
-	fi
-	@for test in $(TEST_PROG_PARA) dummy; do                             \
-	   if test $$test != dummy; then                                      \
-	      $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
-	      RUNEXEC="$(RUNPARALLEL)" || exit 1; \
-	   fi;                                                                \
-	done
-	@for test in $(TEST_SCRIPT_PARA) dummy; do                           \
-	  if test $$test != dummy; then                                      \
-	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
-	  fi;                                                                 \
-	done
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	    echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-# Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
-	@for vfd in $(VFD_LIST) dummy; do                                     \
-	    if test $$vfd != dummy; then                                      \
-	        echo "============================";                          \
-	        echo "Testing Virtual File Driver $$vfd";                     \
-	        echo "============================";                          \
-	        $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1;                \
-	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
-	    fi;                                                               \
-	done
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c
index a871709..8f92660 100644
--- a/tools/h5diff/h5diffgentest.c
+++ b/tools/h5diff/h5diffgentest.c
@@ -1014,14 +1014,14 @@ int test_attributes(const char *file,
 static int test_attributes_verbose_level(const char *fname1, const char *fname2)
 {
     herr_t  status = SUCCEED;
-    hid_t   fid1, fid2;
-    hid_t   f1_gid, f2_gid;
-    hid_t   f1_gid2, f2_gid2;
-    hid_t   f1_gid3, f2_gid3;
-    hid_t   f1_gid4, f2_gid4;
-    hid_t   f1_did, f2_did;
-    hid_t   f1_sid, f2_sid;
-    hid_t   f1_tid, f2_tid;
+    hid_t   fid1    = -1,   fid2 = -1;
+    hid_t   f1_gid  = -1,   f2_gid = -1;
+    hid_t   f1_gid2 = -1,   f2_gid2 = -1;
+    hid_t   f1_gid3 = -1,   f2_gid3 = -1;
+    hid_t   f1_gid4 = -1,   f2_gid4 = -1;
+    hid_t   f1_did  = -1,   f2_did = -1;
+    hid_t   f1_sid  = -1,   f2_sid = -1;
+    hid_t   f1_tid  = -1,   f2_tid = -1;
     /* dset */
     hsize_t dset_dims[1]={3};
     int dset_data[3] = {0,1,2};
@@ -1252,9 +1252,9 @@ out:
     /*-----------------------------------------------------------------------
     * Close
     *-----------------------------------------------------------------------*/
-    if(fid1)
+    if(fid1 > 0)
         H5Fclose(fid1);
-    if(fid2)
+    if(fid2 > 0)
         H5Fclose(fid2);
     if(f1_gid > 0)
         H5Gclose(f1_gid);
@@ -1276,13 +1276,13 @@ out:
         H5Dclose(f1_did);
     if(f2_did > 0)
         H5Dclose(f2_did);
-    if(f1_sid >0)
+    if(f1_sid > 0)
         H5Sclose(f1_sid);
-    if(f2_sid >0)
+    if(f2_sid > 0)
         H5Sclose(f2_sid);
-    if(f1_tid >0)
+    if(f1_tid > 0)
         H5Tclose(f1_tid);
-    if(f2_tid >0)
+    if(f2_tid > 0)
         H5Tclose(f2_tid);
 
     return status;
@@ -2797,15 +2797,18 @@ out:
 #define GRP_R_DSETNAME2 "dset2"
 static int test_group_recurse2(void)
 {
-    hid_t       fileid1;
-    hid_t       grp1=0, grp2;
-    hid_t       grp3=0;
-    hid_t       grp4=0;
-    hid_t       dset1, dset2;
-    hid_t       datatype, dataspace;   /* handles */
-    hid_t       fileid2;
-    hid_t       fileid3;
-    hid_t       fileid4;
+    hid_t       fileid1     = -1;
+    hid_t       grp1        = -1;
+    hid_t       grp2        = -1;
+    hid_t       grp3        = -1;
+    hid_t       grp4        = -1;
+    hid_t       dset1       = -1;
+    hid_t       dset2       = -1;
+    hid_t       datatype    = -1;
+    hid_t       dataspace   = -1;
+    hid_t       fileid2     = -1;
+    hid_t       fileid3     = -1;
+    hid_t       fileid4     = -1;
     hsize_t     dimsf[2];              /* dataset dimensions */
     herr_t      status=0;
     int data1[4][2] = {{0,0},{1,1},{2,2},{3,3}};
@@ -3098,12 +3101,18 @@ out:
     /*
      * Close/release resources.
      */
-    H5Sclose(dataspace);
-    H5Tclose(datatype);
-    H5Fclose(fileid1);
-    H5Fclose(fileid2);
-    H5Fclose(fileid3);
-    H5Fclose(fileid4);
+    if(dataspace > 0)
+        H5Sclose(dataspace);
+    if(datatype > 0)
+        H5Tclose(datatype);
+    if(fileid1 > 0)
+        H5Fclose(fileid1);
+    if(fileid2 > 0)
+        H5Fclose(fileid2);
+    if(fileid3 > 0)
+        H5Fclose(fileid3);
+    if(fileid4 > 0)
+        H5Fclose(fileid4);
 
     return status;
 }
@@ -3506,8 +3515,8 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int
 {
     int i;
 
-    hid_t    fid1;      /* file id */
-    hid_t    gid;
+    hid_t    fid1   = -1;      /* file id */
+    hid_t    gid    = -1;
 
     /* compound1 datatype */
     typedef struct comp1_t
@@ -4153,60 +4162,60 @@ out:
    /*-----------------------------------------------------------------------
     * Close
     *-----------------------------------------------------------------------*/
-    if(fid1)
+    if(fid1 > 0)
         H5Fclose(fid1);
-    if(gid)
+    if(gid > 0)
         H5Gclose(gid);
     /* vlen string */
-    if(tid_vlen_str)
+    if(tid_vlen_str > 0)
         H5Tclose(tid_vlen_str);
-    if(sid_vlen_str)
+    if(sid_vlen_str > 0)
         H5Sclose(sid_vlen_str);
     /* fixed len string */
-    if(tid_fixlen_str)
+    if(tid_fixlen_str > 0)
         H5Tclose(tid_fixlen_str);
-    if(sid_fixlen_str)
+    if(sid_fixlen_str > 0)
         H5Sclose(sid_fixlen_str);
     /* vlen string array */
-    if(tid_vlen_str_array_pre)
+    if(tid_vlen_str_array_pre > 0)
         H5Tclose(tid_vlen_str_array_pre);
-    if(tid_vlen_str_array)
+    if(tid_vlen_str_array > 0)
         H5Tclose(tid_vlen_str_array);
-    if(sid_vlen_str_array)
+    if(sid_vlen_str_array > 0)
         H5Sclose(sid_vlen_str_array);
     /* fixed len string array */
-    if(tid_fixlen_str_array_pre)
+    if(tid_fixlen_str_array_pre > 0)
         H5Tclose(tid_fixlen_str_array_pre);
-    if(tid_fixlen_str_array)
+    if(tid_fixlen_str_array > 0)
         H5Tclose(tid_fixlen_str_array);
-    if(sid_fixlen_str_array)
+    if(sid_fixlen_str_array > 0)
         H5Sclose(sid_fixlen_str_array);
     /* compound */
-    if(tid1_comp)
+    if(tid1_comp > 0)
         H5Tclose(tid1_comp);
-    if(tid2_comp)
+    if(tid2_comp > 0)
         H5Tclose(tid2_comp);
-    if(tid3_comp)
+    if(tid3_comp > 0)
         H5Tclose(tid3_comp);
-    if(tid4_comp)
+    if(tid4_comp > 0)
         H5Tclose(tid4_comp);
-    if(tid5_comp)
+    if(tid5_comp > 0)
         H5Tclose(tid5_comp);
-    if(tid6_comp)
+    if(tid6_comp > 0)
         H5Tclose(tid6_comp);
-    if(tid7_comp)
+    if(tid7_comp > 0)
         H5Tclose(tid7_comp);
-    if(tid8_comp)
+    if(tid8_comp > 0)
         H5Tclose(tid8_comp);
-    if(tid9_comp)
+    if(tid9_comp > 0)
         H5Tclose(tid9_comp);
-    if(did_comp)
+    if(did_comp > 0)
         H5Dclose(did_comp);
-    if(sid_comp)
+    if(sid_comp > 0)
         H5Sclose(sid_comp);
 
     return status;
-}
+} /* end test_comp_vlen_strings() */
 
 
 /*-------------------------------------------------------------------------
diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in
index 8c54492..540af74 100644
--- a/tools/h5dump/Makefile.in
+++ b/tools/h5dump/Makefile.in
@@ -1,7 +1,7 @@
-# Makefile.in generated by automake 1.14.1 from Makefile.am.
+# Makefile.in generated by automake 1.15 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
+# Copyright (C) 1994-2014 Free Software Foundation, Inc.
 
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -32,7 +32,17 @@
 #
 
 VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
+am__is_gnu_make = { \
+  if test -z '$(MAKELEVEL)'; then \
+    false; \
+  elif test -n '$(MAKE_HOST)'; then \
+    true; \
+  elif test -n '$(MAKE_VERSION)' && test -n '$(CURDIR)'; then \
+    true; \
+  else \
+    false; \
+  fi; \
+}
 am__make_running_with_option = \
   case $${target_option-} in \
       ?) ;; \
@@ -95,22 +105,20 @@ PRE_UNINSTALL = :
 POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
-DIST_COMMON = $(top_srcdir)/config/commence.am \
-	$(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
-	$(srcdir)/Makefile.am $(top_srcdir)/bin/mkinstalldirs \
-	$(srcdir)/testh5dump.sh.in $(srcdir)/testh5dumppbits.sh.in \
-	$(srcdir)/testh5dumpvds.sh.in $(srcdir)/testh5dumpxml.sh.in \
-	$(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver
 check_PROGRAMS = $(am__EXEEXT_1) binread$(EXEEXT)
 bin_PROGRAMS = h5dump$(EXEEXT)
 TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT)
 subdir = tools/h5dump
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \
-	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac
+	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/m4/libtool.m4 \
+	$(top_srcdir)/m4/ltoptions.m4 $(top_srcdir)/m4/ltsugar.m4 \
+	$(top_srcdir)/m4/ltversion.m4 $(top_srcdir)/m4/lt~obsolete.m4 \
+	$(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
-mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
+mkinstalldirs = $(install_sh) -d
 CONFIG_HEADER = $(top_builddir)/src/H5config.h \
 	$(top_builddir)/fortran/src/H5config_f.inc
 CONFIG_CLEAN_FILES = testh5dump.sh testh5dumppbits.sh testh5dumpvds.sh \
@@ -401,6 +409,11 @@ am__test_logs2 = $(am__test_logs1:@EXEEXT@.log=.log)
 TEST_LOGS = $(am__test_logs2:.sh.log=.log)
 SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/bin/test-driver
 SH_LOG_COMPILE = $(SH_LOG_COMPILER) $(AM_SH_LOG_FLAGS) $(SH_LOG_FLAGS)
+am__DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/testh5dump.sh.in \
+	$(srcdir)/testh5dumppbits.sh.in $(srcdir)/testh5dumpvds.sh.in \
+	$(srcdir)/testh5dumpxml.sh.in $(top_srcdir)/bin/depcomp \
+	$(top_srcdir)/bin/test-driver $(top_srcdir)/config/commence.am \
+	$(top_srcdir)/config/conclude.am
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
@@ -420,7 +433,6 @@ AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
 AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
 AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
 AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
-AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AUTOCONF = @AUTOCONF@
 AUTOHEADER = @AUTOHEADER@
@@ -518,6 +530,7 @@ LL_PATH = @LL_PATH@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
+LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
 MAINT = @MAINT@
 MAKEINFO = @MAKEINFO@
 MANIFEST_TOOL = @MANIFEST_TOOL@
@@ -743,7 +756,6 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir
 	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5dump/Makefile'; \
 	$(am__cd) $(top_srcdir) && \
 	  $(AUTOMAKE) --foreign tools/h5dump/Makefile
-.PRECIOUS: Makefile
 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	@case '$?' in \
 	  *config.status*) \
@@ -752,7 +764,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
 	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
 	esac;
-$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am:
+$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__empty):
 
 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
@@ -962,7 +974,7 @@ $(TEST_SUITE_LOG): $(TEST_LOGS)
 	if test -n "$$am__remaking_logs"; then \
 	  echo "fatal: making $(TEST_SUITE_LOG): possible infinite" \
 	       "recursion detected" >&2; \
-	else \
+	elif test -n "$$redo_logs"; then \
 	  am__remaking_logs=yes $(MAKE) $(AM_MAKEFLAGS) $$redo_logs; \
 	fi; \
 	if $(am__make_dryrun); then :; else \
@@ -1246,6 +1258,8 @@ uninstall-am: uninstall-binPROGRAMS
 	pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am \
 	uninstall-binPROGRAMS
 
+.PRECIOUS: Makefile
+
 
 # List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
 # This tells the Makefiles that these targets are not files to be built but
diff --git a/tools/h5dump/errfiles/tall-1.err b/tools/h5dump/errfiles/tall-1.err
index ba691d0..ab9dbe3 100644
--- a/tools/h5dump/errfiles/tall-1.err
+++ b/tools/h5dump/errfiles/tall-1.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/errfiles/tall-2A.err b/tools/h5dump/errfiles/tall-2A.err
index ba691d0..ab9dbe3 100644
--- a/tools/h5dump/errfiles/tall-2A.err
+++ b/tools/h5dump/errfiles/tall-2A.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/errfiles/tall-2A0.err b/tools/h5dump/errfiles/tall-2A0.err
index ba691d0..ab9dbe3 100644
--- a/tools/h5dump/errfiles/tall-2A0.err
+++ b/tools/h5dump/errfiles/tall-2A0.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/errfiles/tall-2B.err b/tools/h5dump/errfiles/tall-2B.err
index ba691d0..ab9dbe3 100644
--- a/tools/h5dump/errfiles/tall-2B.err
+++ b/tools/h5dump/errfiles/tall-2B.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/errfiles/textlink.err b/tools/h5dump/errfiles/textlink.err
index 03c0550..95556db 100644
--- a/tools/h5dump/errfiles/textlink.err
+++ b/tools/h5dump/errfiles/textlink.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -25,10 +25,10 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     minor: Unable to open file
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/errfiles/textlinkfar.err b/tools/h5dump/errfiles/textlinkfar.err
index 969e17c..5aa7f87 100644
--- a/tools/h5dump/errfiles/textlinkfar.err
+++ b/tools/h5dump/errfiles/textlinkfar.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -24,7 +24,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #008: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #009: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -67,7 +67,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #006: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #007: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -88,7 +88,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #013: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #014: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -109,7 +109,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #020: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #021: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -130,7 +130,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #027: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #028: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -164,7 +164,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #006: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #007: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -185,7 +185,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #013: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #014: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -206,7 +206,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #020: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #021: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -227,7 +227,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #027: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #028: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/errfiles/textlinksrc.err b/tools/h5dump/errfiles/textlinksrc.err
index 969e17c..5aa7f87 100644
--- a/tools/h5dump/errfiles/textlinksrc.err
+++ b/tools/h5dump/errfiles/textlinksrc.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -24,7 +24,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #008: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #009: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -67,7 +67,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #006: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #007: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -88,7 +88,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #013: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #014: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -109,7 +109,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #020: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #021: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -130,7 +130,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #027: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #028: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -164,7 +164,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #006: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #007: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -185,7 +185,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #013: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #014: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -206,7 +206,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #020: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #021: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
@@ -227,7 +227,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
     major: Symbol table
     minor: Can't open object
   #027: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #028: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/errfiles/torderlinks1.err b/tools/h5dump/errfiles/torderlinks1.err
index 780c7e6..e665f03 100644
--- a/tools/h5dump/errfiles/torderlinks1.err
+++ b/tools/h5dump/errfiles/torderlinks1.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/errfiles/torderlinks2.err b/tools/h5dump/errfiles/torderlinks2.err
index 780c7e6..e665f03 100644
--- a/tools/h5dump/errfiles/torderlinks2.err
+++ b/tools/h5dump/errfiles/torderlinks2.err
@@ -1,9 +1,9 @@
 HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs):
   #000: (file name) line (number) in H5Oopen(): unable to open object
-    major: Symbol table
+    major: Object header
     minor: Can't open object
   #001: (file name) line (number) in H5O_open_name(): object not found
-    major: Symbol table
+    major: Object header
     minor: Object not found
   #002: (file name) line (number) in H5G_loc_find(): can't find object
     major: Symbol table
diff --git a/tools/h5dump/h5dump_ddl.c b/tools/h5dump/h5dump_ddl.c
index 0cd0847..fd50710 100644
--- a/tools/h5dump/h5dump_ddl.c
+++ b/tools/h5dump/h5dump_ddl.c
@@ -1518,10 +1518,10 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H
 void
 handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name)
 {
-    hid_t  oid = -1;
-    hid_t  attr_id = -1;
-    char *obj_name;
-    char *attr_name;
+    hid_t  oid          = -1;
+    hid_t  attr_id      = -1;
+    char *obj_name      = NULL;
+    char *attr_name     = NULL;
     int j;
     h5tools_str_t buffer;          /* string into which to render   */
     h5tools_context_t ctx;            /* print context  */
@@ -1898,8 +1898,9 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT
             begin_obj(h5tools_dump_header_format->softlinkbegin, links, h5tools_dump_header_format->softlinkblockbegin);
             PRINTVALSTREAM(rawoutstream, "\n");
             indentation(COL);
-            if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0)
+            if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) {
                 PRINTSTREAM(rawoutstream, "LINKTARGET \"%s\"\n", buf);
+            }
             else {
                 error_msg("h5dump error: unable to get link value for \"%s\"\n", links);
                 h5tools_setstatus(EXIT_FAILURE);
@@ -1941,7 +1942,7 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT
         case H5L_TYPE_MAX:
             HDassert(0);
             /* fall through */
-        H5L_TYPE_HARD:
+        case H5L_TYPE_HARD:
         default:
             begin_obj(h5tools_dump_header_format->udlinkbegin, links, h5tools_dump_header_format->udlinkblockbegin);
             PRINTVALSTREAM(rawoutstream, "\n");
diff --git a/tools/h5dump/h5dump_ddl.h b/tools/h5dump/h5dump_ddl.h
index 6cd9181..2b3f61e 100644
--- a/tools/h5dump/h5dump_ddl.h
+++ b/tools/h5dump/h5dump_ddl.h
@@ -34,6 +34,10 @@ void      dump_fcontents(hid_t fid);
 /* callback function used by H5Aiterate2() */
 herr_t    dump_attr_cb(hid_t loc_id, const char *attr_name, const H5A_info_t *info, void *_op_data);
 
+/* other iteration functions */
+void link_iteration(hid_t gid, unsigned crt_order_flags);
+void attr_iteration(hid_t gid, unsigned attr_crt_order_flags);
+
 void handle_paths(hid_t fid, const char *path_name, void *data, int pe, const char *display_name);
 void handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *display_name);
 void handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name);
diff --git a/tools/h5dump/h5dump_defines.h b/tools/h5dump/h5dump_defines.h
index 5f2df43..2be2dcc 100644
--- a/tools/h5dump/h5dump_defines.h
+++ b/tools/h5dump/h5dump_defines.h
@@ -23,23 +23,25 @@
 #define COL             3
 
 /* Macros for displaying objects */
-#define begin_obj(obj,name,begin)                               \
-    do {              \
-        if ((name))                                             \
+#define begin_obj(obj,name,begin)                                           \
+    do {                                                                    \
+        if ((name)) {                                                       \
             PRINTSTREAM(rawoutstream, "%s \"%s\" %s", (obj), (name), (begin));   \
-        else                                                    \
-            PRINTSTREAM(rawoutstream, "%s %s", (obj), (begin));      \
+        }                                                                   \
+        else {                                                              \
+            PRINTSTREAM(rawoutstream, "%s %s", (obj), (begin));             \
+        }                                                                   \
     } while(0);
 
-#define end_obj(obj,end)                                        \
-    do {              \
-        if(HDstrlen(end)) {                                     \
-            PRINTSTREAM(rawoutstream, "%s", end);                                  \
-            if(HDstrlen(obj))                                   \
-                PRINTVALSTREAM(rawoutstream, " ");                                    \
-        }                                                       \
-        if(HDstrlen(obj))                                       \
-            PRINTSTREAM(rawoutstream, "%s", obj);                                  \
+#define end_obj(obj,end)                                                    \
+    do {                                                                    \
+        if(HDstrlen(end)) {                                                 \
+            PRINTSTREAM(rawoutstream, "%s", end);                           \
+            if(HDstrlen(obj))                                               \
+                PRINTVALSTREAM(rawoutstream, " ");                          \
+        }                                                                   \
+        if(HDstrlen(obj))                                                   \
+            PRINTSTREAM(rawoutstream, "%s", obj);                           \
     } while(0);
 
 
diff --git a/tools/h5dump/h5dump_xml.c b/tools/h5dump/h5dump_xml.c
index e872114..5bc43eb 100644
--- a/tools/h5dump/h5dump_xml.c
+++ b/tools/h5dump/h5dump_xml.c
@@ -2968,9 +2968,9 @@ static int
 xml_print_refs(hid_t did, int source)
 {
     herr_t      e;
-    hid_t       type;
-    hid_t       space;
-    hssize_t    ssiz;
+    hid_t       type    = -1;
+    hid_t       space   = -1;
+    hssize_t    ssiz    = -1;
     hsize_t     i;
     size_t      tsiz;
     hobj_ref_t *refbuf = NULL;
@@ -3125,11 +3125,11 @@ static int
 xml_print_strs(hid_t did, int source)
 {
     herr_t      e;
-    hid_t       type;
-    hid_t       space;
-    hssize_t    ssiz;
+    hid_t       type    = -1;
+    hid_t       space   = -1;
+    hssize_t    ssiz    = -1;
     htri_t      is_vlstr = FALSE;
-    size_t      tsiz;
+    size_t      tsiz    = 0;
     size_t      i;
     size_t      str_size = 0;
     char       *bp = NULL;
diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in
deleted file mode 100644
index 938f3d9..0000000
--- a/tools/h5import/Makefile.in
+++ /dev/null
@@ -1,1432 +0,0 @@
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-	@if test -n "$(TEST_PROG_PARA)"; then                                \
-	    echo "**** Hint ****";                                            \
-	    echo "Parallel test files reside in the current directory"        \
-	         "by default.";                                               \
-	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
-	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
-	    echo "    export HDF5_PARAPREFIX";                                \
-	    echo "    make check";                                            \
-	    echo "**** end of Hint ****";                                     \
-	fi
-	@for test in $(TEST_PROG_PARA) dummy; do                             \
-	   if test $$test != dummy; then                                      \
-	      $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
-	      RUNEXEC="$(RUNPARALLEL)" || exit 1; \
-	   fi;                                                                \
-	done
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-	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
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-	    echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-# Run test with different Virtual File Driver
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-	@for vfd in $(VFD_LIST) dummy; do                                     \
-	    if test $$vfd != dummy; then                                      \
-	        echo "============================";                          \
-	        echo "Testing Virtual File Driver $$vfd";                     \
-	        echo "============================";                          \
-	        $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1;                \
-	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
-	    fi;                                                               \
-	done
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
diff --git a/tools/h5import/h5import.c b/tools/h5import/h5import.c
index 96fb6f9..9617df3 100644
--- a/tools/h5import/h5import.c
+++ b/tools/h5import/h5import.c
@@ -265,7 +265,7 @@ err:
 static int gtoken(char *s)
 {
     size_t      len;
-    int         token;
+    int         token = ERR;
 
     const char *err1 = "Illegal argument: %s.\n";
 
@@ -995,16 +995,16 @@ out:
  */
 static int processStrHDFData(FILE *strm, struct Input *in, hid_t file_id)
 {
-    hid_t   group_id;
-    hid_t   dset_id;
-    hid_t   space_id;
-    hid_t   mspace_id;
-    hid_t   type_id;
-    hid_t   handle;
-    char   *str1 = NULL;
-    char   *str2 = NULL;
-    char   *str3 = NULL;
-    char    str[1024] = "";
+    hid_t   group_id    = -1;
+    hid_t   dset_id     = -1;
+    hid_t   space_id    = -1;
+    hid_t   mspace_id   = -1;
+    hid_t   type_id     = -1;
+    hid_t   handle      = -1;
+    char   *str1        = NULL;
+    char   *str2        = NULL;
+    char   *str3        = NULL;
+    char    str[1024]   = "";
     int     j;
     hsize_t     line;
 
diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in
deleted file mode 100644
index 9452a9b..0000000
--- a/tools/h5jam/Makefile.in
+++ /dev/null
@@ -1,1454 +0,0 @@
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-
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-
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-	         echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      else \
-	         echo "Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
-	      echo "============================" >> $${log}; \
-	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
-	      srcdir="$(srcdir)" \
-	         $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
-	         && touch $${chkname} || \
-	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	   echo "============================"; \
-	fi
-
-# Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@if test -n "$(TEST_PROG_PARA)"; then                                \
-	    echo "**** Hint ****";                                            \
-	    echo "Parallel test files reside in the current directory"        \
-	         "by default.";                                               \
-	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
-	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
-	    echo "    export HDF5_PARAPREFIX";                                \
-	    echo "    make check";                                            \
-	    echo "**** end of Hint ****";                                     \
-	fi
-	@for test in $(TEST_PROG_PARA) dummy; do                             \
-	   if test $$test != dummy; then                                      \
-	      $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
-	      RUNEXEC="$(RUNPARALLEL)" || exit 1; \
-	   fi;                                                                \
-	done
-	@for test in $(TEST_SCRIPT_PARA) dummy; do                           \
-	  if test $$test != dummy; then                                      \
-	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
-	  fi;                                                                 \
-	done
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	    echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-# Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
-	@for vfd in $(VFD_LIST) dummy; do                                     \
-	    if test $$vfd != dummy; then                                      \
-	        echo "============================";                          \
-	        echo "Testing Virtual File Driver $$vfd";                     \
-	        echo "============================";                          \
-	        $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1;                \
-	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
-	    fi;                                                               \
-	done
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
diff --git a/tools/h5jam/h5jamgentest.c b/tools/h5jam/h5jamgentest.c
index ef45372..d3166b5 100644
--- a/tools/h5jam/h5jamgentest.c
+++ b/tools/h5jam/h5jamgentest.c
@@ -89,12 +89,6 @@ typedef struct s1_t {
 } s1_t;
 
 
-/* 1-D array datatype */
-#define ARRAY1_RANK 1
-
-/* 2-D array datatype */
-#define ARRAY3_DIM2 3
-
 /* A UD link traversal function.  Shouldn't actually be called. */
 static hid_t UD_traverse(const char H5_ATTR_UNUSED * link_name, hid_t H5_ATTR_UNUSED cur_group,
     const void H5_ATTR_UNUSED * udata, size_t H5_ATTR_UNUSED udata_size, hid_t H5_ATTR_UNUSED lapl_id)
diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in
index 68c87b5..cfb169c 100644
--- a/tools/h5ls/Makefile.in
+++ b/tools/h5ls/Makefile.in
@@ -1,7 +1,7 @@
-# Makefile.in generated by automake 1.14.1 from Makefile.am.
+# Makefile.in generated by automake 1.15 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
+# Copyright (C) 1994-2014 Free Software Foundation, Inc.
 
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -32,7 +32,17 @@
 #
 
 VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
+am__is_gnu_make = { \
+  if test -z '$(MAKELEVEL)'; then \
+    false; \
+  elif test -n '$(MAKE_HOST)'; then \
+    true; \
+  elif test -n '$(MAKE_VERSION)' && test -n '$(CURDIR)'; then \
+    true; \
+  else \
+    false; \
+  fi; \
+}
 am__make_running_with_option = \
   case $${target_option-} in \
       ?) ;; \
@@ -95,20 +105,19 @@ PRE_UNINSTALL = :
 POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
-DIST_COMMON = $(top_srcdir)/config/commence.am \
-	$(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
-	$(srcdir)/Makefile.am $(top_srcdir)/bin/mkinstalldirs \
-	$(srcdir)/testh5ls.sh.in $(srcdir)/testh5lsvds.sh.in \
-	$(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver
 bin_PROGRAMS = h5ls$(EXEEXT)
 TESTS = $(TEST_SCRIPT)
 subdir = tools/h5ls
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \
-	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac
+	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/m4/libtool.m4 \
+	$(top_srcdir)/m4/ltoptions.m4 $(top_srcdir)/m4/ltsugar.m4 \
+	$(top_srcdir)/m4/ltversion.m4 $(top_srcdir)/m4/lt~obsolete.m4 \
+	$(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
-mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
+mkinstalldirs = $(install_sh) -d
 CONFIG_HEADER = $(top_builddir)/src/H5config.h \
 	$(top_builddir)/fortran/src/H5config_f.inc
 CONFIG_CLEAN_FILES = testh5ls.sh testh5lsvds.sh
@@ -386,6 +395,10 @@ am__set_b = \
     *) \
       b='$*';; \
   esac
+am__DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/testh5ls.sh.in \
+	$(srcdir)/testh5lsvds.sh.in $(top_srcdir)/bin/depcomp \
+	$(top_srcdir)/bin/test-driver $(top_srcdir)/config/commence.am \
+	$(top_srcdir)/config/conclude.am
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
@@ -405,7 +418,6 @@ AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
 AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
 AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
 AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
-AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AUTOCONF = @AUTOCONF@
 AUTOHEADER = @AUTOHEADER@
@@ -503,6 +515,7 @@ LL_PATH = @LL_PATH@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
+LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
 MAINT = @MAINT@
 MAKEINFO = @MAKEINFO@
 MANIFEST_TOOL = @MANIFEST_TOOL@
@@ -720,7 +733,6 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir
 	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5ls/Makefile'; \
 	$(am__cd) $(top_srcdir) && \
 	  $(AUTOMAKE) --foreign tools/h5ls/Makefile
-.PRECIOUS: Makefile
 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	@case '$?' in \
 	  *config.status*) \
@@ -729,7 +741,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
 	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
 	esac;
-$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am:
+$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__empty):
 
 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
@@ -914,7 +926,7 @@ $(TEST_SUITE_LOG): $(TEST_LOGS)
 	if test -n "$$am__remaking_logs"; then \
 	  echo "fatal: making $(TEST_SUITE_LOG): possible infinite" \
 	       "recursion detected" >&2; \
-	else \
+	elif test -n "$$redo_logs"; then \
 	  am__remaking_logs=yes $(MAKE) $(AM_MAKEFLAGS) $$redo_logs; \
 	fi; \
 	if $(am__make_dryrun); then :; else \
@@ -1188,6 +1200,8 @@ uninstall-am: uninstall-binPROGRAMS
 	mostlyclean-local pdf pdf-am ps ps-am recheck tags tags-am \
 	uninstall uninstall-am uninstall-binPROGRAMS
 
+.PRECIOUS: Makefile
+
 
 # List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
 # This tells the Makefiles that these targets are not files to be built but
diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in
deleted file mode 100644
index 02be99d..0000000
--- a/tools/h5repack/Makefile.in
+++ /dev/null
@@ -1,1548 +0,0 @@
-# Makefile.in generated by automake 1.14.1 from Makefile.am.
-# @configure_input@
-
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
-
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-@SET_MAKE@
-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html.  COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page.  It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-#
-# HDF5 Library Makefile(.in)
-#
-
-
-VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
-am__make_running_with_option = \
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-      ?) ;; \
-      *) echo "am__make_running_with_option: internal error: invalid" \
-              "target option '$${target_option-}' specified" >&2; \
-         exit 1;; \
-  esac; \
-  has_opt=no; \
-  sane_makeflags=$$MAKEFLAGS; \
-  if $(am__is_gnu_make); then \
-    sane_makeflags=$$MFLAGS; \
-  else \
-    case $$MAKEFLAGS in \
-      *\\[\ \	]*) \
-        bs=\\; \
-        sane_makeflags=`printf '%s\n' "$$MAKEFLAGS" \
-          | sed "s/$$bs$$bs[$$bs $$bs	]*//g"`;; \
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-  fi; \
-  skip_next=no; \
-  strip_trailopt () \
-  { \
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-        -*I) strip_trailopt 'I'; skip_next=yes;; \
-      -*I?*) strip_trailopt 'I';; \
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-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
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-	$(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver
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-	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
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-CONFIG_HEADER = $(top_builddir)/src/H5config.h \
-	$(top_builddir)/fortran/src/H5config_f.inc
-CONFIG_CLEAN_FILES = h5repack.sh h5repack_plugin.sh
-CONFIG_CLEAN_VPATH_FILES =
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-am__v_CCLD_1 = 
-SOURCES = $(libdynlibadd_la_SOURCES) $(h5repack_SOURCES) \
-	$(h5repacktst_SOURCES) $(testh5repack_detect_szip_SOURCES)
-DIST_SOURCES = $(am__libdynlibadd_la_SOURCES_DIST) $(h5repack_SOURCES) \
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-am__can_run_installinfo = \
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-# Shell commands used in Makefiles
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-CP = cp
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-# Some machines need a command to run executables; this is that command
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-# in some directories, for instance.
-RUNEXEC = $(RUNSERIAL)
-
-# Libraries to link to while building
-LIBHDF5 = $(top_builddir)/src/libhdf5.la
-LIBH5TEST = $(top_builddir)/test/libh5test.la
-LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
-LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
-LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
-LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
-LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
-LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
-LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
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-# Note that in svn revision 19400 the '/' after DESTDIR in H5* variables below  
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-H5CC_PP = ${DESTDIR}$(bindir)/h5pcc
-H5FC = ${DESTDIR}$(bindir)/h5fc
-H5FC_PP = ${DESTDIR}$(bindir)/h5pfc
-H5CPP = ${DESTDIR}$(bindir)/h5c++
-ACLOCAL_AMFLAGS = "-I m4"
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-# The trace script; this is used on source files from the C library to
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-TRACE = perl $(top_srcdir)/bin/trace
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-# .chkexe files are used to mark tests that have run successfully.
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-# Test programs and scripts
-TEST_SCRIPT = h5repack.sh $(am__append_1)
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-h5repack_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
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-# Source files
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-h5repack_SOURCES = $(COMMON_SOURCES) h5repack_main.c
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-
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-	done
-
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-
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-# Makefiles should recognize it.
-# UPDATE: docs no longer reside in this build tree, so this target
-# is depreciated.
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-
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-
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-
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-
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-	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
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-	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
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-	done
-
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diff --git a/tools/h5repack/h5repack_verify.c b/tools/h5repack/h5repack_verify.c
index 42799f9..52423f1 100644
--- a/tools/h5repack/h5repack_verify.c
+++ b/tools/h5repack/h5repack_verify.c
@@ -51,17 +51,17 @@ static int verify_filters(hid_t pid, hid_t tid, int nfilters, filter_info_t *fil
 int
 h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options)
 {
-    hid_t        fidin;	 /* file ID for input file*/
-    hid_t        fidout; /* file ID for output file*/
-    hid_t        did;    /* dataset ID */
-    hid_t        pid;    /* dataset creation property list ID */
-    hid_t        sid;    /* space ID */
-    hid_t        tid;    /* type ID */
+    hid_t        fidin      = -1;	/* file ID for input file*/
+    hid_t        fidout     = -1;   /* file ID for output file*/
+    hid_t        did        = -1;   /* dataset ID */
+    hid_t        pid        = -1;   /* dataset creation property list ID */
+    hid_t        sid        = -1;   /* space ID */
+    hid_t        tid        = -1;   /* type ID */
     unsigned int i;
     trav_table_t *travt = NULL;
     int          ok = 1;
-    hid_t       fcpl_in;  /* file creation property for input file */
-    hid_t   	fcpl_out; /* file creation property for output file */
+    hid_t       fcpl_in     = -1;   /* file creation property for input file */
+    hid_t   	fcpl_out    = -1;   /* file creation property for output file */
     H5F_file_space_type_t in_strat, out_strat;	/* file space handling strategy for in/output file */
     hsize_t	in_thresh, out_thresh;		/* free space section threshold for in/output file */
 
diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c
index 46d895c..3959300 100644
--- a/tools/h5repack/h5repacktst.c
+++ b/tools/h5repack/h5repacktst.c
@@ -1547,10 +1547,8 @@ int main (void)
     {
         hid_t       fapl;
 
-        /* setup */
-        h5_reset();
         fapl = h5_fileaccess();
-        h5_cleanup(H5REPACK_FILENAMES, fapl);
+        h5_clean_files(H5REPACK_FILENAMES, fapl);
 
     }
 
diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in
deleted file mode 100644
index e0d095d..0000000
--- a/tools/h5stat/Makefile.in
+++ /dev/null
@@ -1,1482 +0,0 @@
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-# @configure_input@
-
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-
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-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
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-# Copyright by the Board of Trustees of the University of Illinois.
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-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html.  COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
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-# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
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-
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-	    if test $$d != X && test $$d != .; then                           \
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-	done
-
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-# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
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-
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-# Makefiles should recognize it.
-# UPDATE: docs no longer reside in this build tree, so this target
-# is depreciated.
-install-doc uninstall-doc:
-	@echo "Nothing to be done."
-
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-build-check-clean:
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-check-install: installcheck
-
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-# Since tests are done in a shell loop, "make -i" does apply inside it.
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-# The timestamps give a rough idea how much time the tests use.
-#
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-
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-	fi
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-	fi
-
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-# $${log} is the log file.
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-	   tname=$(@:.chkexe_=)$(EXEEXT);\
-	   log=$(@:.chkexe_=.chklog); \
-	   echo "============================"; \
-	   if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
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-	   else \
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-	         echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
-	      else \
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-	         echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
-	      echo "============================" >> $${log}; \
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-	         && touch $(@:.chkexe_=.chkexe) || \
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-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	fi
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-	   cmd=$(@:.chkexe_=);\
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-	   chkname=`basename $(@:.chkexe_=.chkexe)`;\
-	   log=`basename $(@:.chkexe_=.chklog)`; \
-	   echo "============================"; \
-	   if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
-	      echo "No need to test $${tname} again."; \
-	   else \
-	      echo "============================" > $${log}; \
-	      if test "X$(FORTRAN_API)" = "Xyes"; then \
-	         echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      else \
-	         echo "Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
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-	      srcdir="$(srcdir)" \
-	         $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
-	         && touch $${chkname} || \
-	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	   echo "============================"; \
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-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@if test -n "$(TEST_PROG_PARA)"; then                                \
-	    echo "**** Hint ****";                                            \
-	    echo "Parallel test files reside in the current directory"        \
-	         "by default.";                                               \
-	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
-	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
-	    echo "    export HDF5_PARAPREFIX";                                \
-	    echo "    make check";                                            \
-	    echo "**** end of Hint ****";                                     \
-	fi
-	@for test in $(TEST_PROG_PARA) dummy; do                             \
-	   if test $$test != dummy; then                                      \
-	      $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
-	      RUNEXEC="$(RUNPARALLEL)" || exit 1; \
-	   fi;                                                                \
-	done
-	@for test in $(TEST_SCRIPT_PARA) dummy; do                           \
-	  if test $$test != dummy; then                                      \
-	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
-	  fi;                                                                 \
-	done
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	    echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
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-check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
-	@for vfd in $(VFD_LIST) dummy; do                                     \
-	    if test $$vfd != dummy; then                                      \
-	        echo "============================";                          \
-	        echo "Testing Virtual File Driver $$vfd";                     \
-	        echo "============================";                          \
-	        $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1;                \
-	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
-	    fi;                                                               \
-	done
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
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diff --git a/tools/h5stat/h5stat_gentest.c b/tools/h5stat/h5stat_gentest.c
index 5ad73f7..100f5b2 100644
--- a/tools/h5stat/h5stat_gentest.c
+++ b/tools/h5stat/h5stat_gentest.c
@@ -48,14 +48,14 @@
 static void 
 gen_newgrat_file(const char *fname)
 {
-    hid_t fcpl; 	/* File creation property */
-    hid_t fapl; 	/* File access property */
-    hid_t fid;		/* File id */
-    hid_t gid;		/* Group id */
-    hid_t tid;		/* Datatype id */
-    hid_t sid; 		/* Dataspace id */
-    hid_t attr_id; 	/* Attribute id */
-    hid_t did;		/* Dataset id */
+    hid_t fcpl          = -1;   /* File creation property */
+    hid_t fapl          = -1;   /* File access property */
+    hid_t fid           = -1;   /* File id */
+    hid_t gid           = -1;   /* Group id */
+    hid_t tid           = -1;   /* Datatype id */
+    hid_t sid           = -1;   /* Dataspace id */
+    hid_t attr_id       = -1;   /* Attribute id */
+    hid_t did           = -1;   /* Dataset id */
     char name[30];	/* Group name */
     char attrname[30];	/* Attribute name */
     int  i;		/* Local index variable */
diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in
deleted file mode 100644
index ba26950..0000000
--- a/tools/lib/Makefile.in
+++ /dev/null
@@ -1,1377 +0,0 @@
-# Makefile.in generated by automake 1.14.1 from Makefile.am.
-# @configure_input@
-
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
-
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-@SET_MAKE@
-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html.  COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page.  It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
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-# HDF5 Library Makefile(.in)
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-VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
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-	        am__force_recheck=am--force-recheck \
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-	exit $$?
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-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
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-	    test -f "$(distdir)/$$file" \
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-	done
-check-am: all-am
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-	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
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-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
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-	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	      install; \
-	else \
-	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
-	fi
-mostlyclean-generic:
-	-test -z "$(TEST_LOGS)" || rm -f $(TEST_LOGS)
-	-test -z "$(TEST_LOGS:.log=.trs)" || rm -f $(TEST_LOGS:.log=.trs)
-	-test -z "$(TEST_SUITE_LOG)" || rm -f $(TEST_SUITE_LOG)
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-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
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-
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-	clean-noinstLTLIBRARIES mostlyclean-am
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-distclean: distclean-am
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-	-rm -f Makefile
-distclean-am: clean-am distclean-compile distclean-generic \
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-dvi: dvi-am
-
-dvi-am:
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-html: html-am
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-info-am:
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-install-dvi-am:
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-	-rm -rf ./$(DEPDIR)
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-compile mostlyclean-generic \
-	mostlyclean-libtool mostlyclean-local
-
-pdf: pdf-am
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-pdf-am:
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-ps: ps-am
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-ps-am:
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-.MAKE: check-am install-am install-strip
-
-.PHONY: CTAGS GTAGS TAGS all all-am all-local check check-TESTS \
-	check-am clean clean-checkPROGRAMS clean-generic clean-libtool \
-	clean-noinstLTLIBRARIES cscopelist-am ctags ctags-am distclean \
-	distclean-compile distclean-generic distclean-libtool \
-	distclean-tags distdir dvi dvi-am html html-am info info-am \
-	install install-am install-data install-data-am install-dvi \
-	install-dvi-am install-exec install-exec-am install-html \
-	install-html-am install-info install-info-am install-man \
-	install-pdf install-pdf-am install-ps install-ps-am \
-	install-strip installcheck installcheck-am installdirs \
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-	mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
-	mostlyclean-local pdf pdf-am ps ps-am recheck tags tags-am \
-	uninstall uninstall-am
-
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-# List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
-# This tells the Makefiles that these targets are not files to be built but
-# commands that should be executed even if a file with the same name already
-# exists.
-.PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
-        build-tests check-clean check-install check-p check-s check-vfd \
-        install-doc lib progs tests uninstall-doc _exec_check-s _test help
-
-help:
-	@$(top_srcdir)/bin/makehelp
-
-# lib/progs/tests targets recurse into subdirectories. build-* targets
-# build files in this directory.
-build-lib: $(LIB)
-build-progs: $(LIB) $(PROGS)
-build-tests: $(LIB) $(PROGS) $(chk_TESTS)
-
-# General rule for recursive building targets.
-# BUILT_SOURCES contain targets that need to be built before anything else
-# in the directory (e.g., for Fortran type detection)
-lib progs tests check-s check-p :: $(BUILT_SOURCES)
-	@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
-	@for d in X $(SUBDIRS); do                                             \
-	    if test $$d != X && test $$d != .; then                           \
-	        (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;     \
-	    fi;                                                               \
-	done
-
-# General rule for recursive cleaning targets.  Like the rule above,
-# but doesn't require building BUILT_SOURCES.
-check-clean ::
-	@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
-	@for d in X $(SUBDIRS); do                                             \
-	    if test $$d != X && test $$d != .; then                           \
-	        (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;     \
-	    fi;                                                               \
-	done
-
-# Tell Automake to build tests when the user types `make all' (this is
-# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
-# Automake won't build them automatically, either.
-all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS)
-
-# make install-doc doesn't do anything outside of doc directory, but
-# Makefiles should recognize it.
-# UPDATE: docs no longer reside in this build tree, so this target
-# is depreciated.
-install-doc uninstall-doc:
-	@echo "Nothing to be done."
-
-# clean up files generated by tests so they can be re-run.
-build-check-clean:
-	$(RM) -rf $(CHECK_CLEANFILES)
-
-# run check-clean whenever mostlyclean is run
-mostlyclean-local: build-check-clean
-
-# check-install is just a synonym for installcheck
-check-install: installcheck
-
-# Run each test in order, passing $(TEST_FLAGS) to the program.
-# Since tests are done in a shell loop, "make -i" does apply inside it.
-# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
-# The timestamps give a rough idea how much time the tests use.
-#
-# Note that targets in chk_TESTS (defined above) will be built when the user
-# types 'make tests' or 'make check', but only programs in TEST_PROG,
-# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
-check-TESTS: test
-
-test _test:
-	@$(MAKE) build-check-s
-	@$(MAKE) build-check-p
-
-# Actual execution of check-s.
-build-check-s: $(LIB) $(PROGS) $(chk_TESTS)
-	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
-	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@$(MAKE) $(AM_MAKEFLAGS) _exec_check-s
-	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
-	    echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH)
-
-# The dummy.chkexe here prevents the target from being
-# empty if there are no tests in the current directory.
-# $${log} is the log file.
-# $${tname} is the name of test.
-$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_:
-	@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \
-	   tname=$(@:.chkexe_=)$(EXEEXT);\
-	   log=$(@:.chkexe_=.chklog); \
-	   echo "============================"; \
-	   if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
-	      echo "No need to test $${tname} again."; \
-	   else \
-	      echo "============================" > $${log}; \
-	      if test "X$(FORTRAN_API)" = "Xyes"; then \
-	         echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
-	      else \
-	         echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \
-	         echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
-	      echo "============================" >> $${log}; \
-	      srcdir="$(srcdir)" \
-	         $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \
-	         && touch $(@:.chkexe_=.chkexe) || \
-	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	fi
-
-# The dummysh.chkexe here prevents the target from being
-# empty if there are no tests in the current directory.
-# $${log} is the log file.
-# $${tname} is the name of test.
-$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
-	@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \
-	   cmd=$(@:.chkexe_=);\
-	   tname=`basename $$cmd`;\
-	   chkname=`basename $(@:.chkexe_=.chkexe)`;\
-	   log=`basename $(@:.chkexe_=.chklog)`; \
-	   echo "============================"; \
-	   if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
-	      echo "No need to test $${tname} again."; \
-	   else \
-	      echo "============================" > $${log}; \
-	      if test "X$(FORTRAN_API)" = "Xyes"; then \
-	         echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      elif test "X$(CXX_API)" = "Xyes"; then \
-	         echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      else \
-	         echo "Testing $${tname} $(TEST_FLAGS)"; \
-	         echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
-	      fi; \
-	      echo "============================" >> $${log}; \
-	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
-	      srcdir="$(srcdir)" \
-	         $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
-	         && touch $${chkname} || \
-	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	   echo "============================"; \
-	fi
-
-# Actual execution of check-p.
-build-check-p: $(LIB) $(PROGS) $(chk_TESTS)
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@if test -n "$(TEST_PROG_PARA)"; then                                \
-	    echo "**** Hint ****";                                            \
-	    echo "Parallel test files reside in the current directory"        \
-	         "by default.";                                               \
-	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
-	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
-	    echo "    export HDF5_PARAPREFIX";                                \
-	    echo "    make check";                                            \
-	    echo "**** end of Hint ****";                                     \
-	fi
-	@for test in $(TEST_PROG_PARA) dummy; do                             \
-	   if test $$test != dummy; then                                      \
-	      $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
-	      RUNEXEC="$(RUNPARALLEL)" || exit 1; \
-	   fi;                                                                \
-	done
-	@for test in $(TEST_SCRIPT_PARA) dummy; do                           \
-	  if test $$test != dummy; then                                      \
-	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
-	  fi;                                                                 \
-	done
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	    echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-# Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
-	@for vfd in $(VFD_LIST) dummy; do                                     \
-	    if test $$vfd != dummy; then                                      \
-	        echo "============================";                          \
-	        echo "Testing Virtual File Driver $$vfd";                     \
-	        echo "============================";                          \
-	        $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1;                \
-	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
-	    fi;                                                               \
-	done
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c
index badaf3c..46dcf6f 100644
--- a/tools/lib/h5diff.c
+++ b/tools/lib/h5diff.c
@@ -594,8 +594,8 @@ hsize_t h5diff(const char *fname1,
     trav_info_t  *info1_grp = NULL;
     trav_info_t  *info2_grp = NULL;
     /* local pointer */
-    trav_info_t  *info1_lp;
-    trav_info_t  *info2_lp;
+    trav_info_t  *info1_lp = NULL;
+    trav_info_t  *info2_lp = NULL;
     /* link info from specified object */
     H5L_info_t src_linfo1;
     H5L_info_t src_linfo2;
diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c
index 274b398..19d71bb 100644
--- a/tools/lib/h5tools.c
+++ b/tools/lib/h5tools.c
@@ -1641,8 +1641,8 @@ render_bin_output_region_blocks(hid_t region_space, hid_t region_id,
     hsize_t      alloc_size;
     hsize_t     *ptdata;
     int          ndims;
-    hid_t        dtype;
-    hid_t        type_id;
+    hid_t        dtype = -1;
+    hid_t        type_id = -1;
 
     if((snblocks = H5Sget_select_hyper_nblocks(region_space)) <= 0)
         H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_hyper_nblocks failed");
@@ -1672,10 +1672,10 @@ render_bin_output_region_blocks(hid_t region_space, hid_t region_id,
  done:
     HDfree(ptdata);
 
-    if(H5Tclose(type_id) < 0)
+    if(type_id > 0 && H5Tclose(type_id) < 0)
         HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
 
-    if(H5Tclose(dtype) < 0)
+    if(dtype > 0 && H5Tclose(dtype) < 0)
         HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
 
     H5_LEAVE(TRUE)
@@ -1765,8 +1765,8 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id,
     HERR_INIT(hbool_t, TRUE)
     hssize_t npoints;
     int      ndims;
-    hid_t    dtype;
-    hid_t    type_id;
+    hid_t    dtype = -1;
+    hid_t    type_id = -1;
 
     if((npoints = H5Sget_select_elem_npoints(region_space)) <= 0)
         H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_elem_npoints failed");
@@ -1785,10 +1785,10 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id,
             stream, container, ndims, type_id, npoints);
 
  done:
-    if(H5Tclose(type_id) < 0)
+    if(type_id > 0 && H5Tclose(type_id) < 0)
         HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
 
-    if(H5Tclose(dtype) < 0)
+    if(dtype > 0 && H5Tclose(dtype) < 0)
         HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
 
     H5_LEAVE(ret_value)
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index 6512f9b..d2e3ea6 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -593,8 +593,12 @@ H5TOOLS_DLL void    h5tools_region_simple_prefix(FILE *stream, const h5tool_form
                             h5tools_context_t *ctx, hsize_t elmtno, hsize_t *ptdata, int secnum);
 
 H5TOOLS_DLL int     render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t nelmts);
+H5TOOLS_DLL int     render_bin_output_region_data_blocks(hid_t region_id, FILE *stream,
+                            hid_t container, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata);
 H5TOOLS_DLL hbool_t render_bin_output_region_blocks(hid_t region_space, hid_t region_id,
                              FILE *stream, hid_t container);
+H5TOOLS_DLL int     render_bin_output_region_data_points(hid_t region_space, hid_t region_id,
+                            FILE* stream, hid_t container, int ndims, hid_t type_id, hssize_t npoints);
 H5TOOLS_DLL hbool_t render_bin_output_region_points(hid_t region_space, hid_t region_id,
                              FILE *stream, hid_t container);
 
diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c
index 2afe3e4..7928dfb 100644
--- a/tools/lib/h5tools_dump.c
+++ b/tools/lib/h5tools_dump.c
@@ -943,8 +943,8 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id,
     hsize_t *ptdata;
     int      ndims;
     hssize_t indx;
-    hid_t    dtype;
-    hid_t    type_id;
+    hid_t    dtype = -1;
+    hid_t    type_id = -1;
 
     HDassert(info);
     HDassert(ctx);
@@ -1065,10 +1065,10 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id,
  done:
     HDfree(ptdata);
 
-    if(H5Tclose(type_id) < 0)
+    if(type_id > 0 && H5Tclose(type_id) < 0)
         HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
 
-    if(H5Tclose(dtype) < 0)
+    if(dtype > 0 && H5Tclose(dtype) < 0)
         HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
 
     ctx->need_prefix = TRUE;
diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in
index 2dac1d4..4db831a 100644
--- a/tools/misc/Makefile.in
+++ b/tools/misc/Makefile.in
@@ -1,7 +1,7 @@
-# Makefile.in generated by automake 1.14.1 from Makefile.am.
+# Makefile.in generated by automake 1.15 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
+# Copyright (C) 1994-2014 Free Software Foundation, Inc.
 
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -33,7 +33,17 @@
 
 
 VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
+am__is_gnu_make = { \
+  if test -z '$(MAKELEVEL)'; then \
+    false; \
+  elif test -n '$(MAKE_HOST)'; then \
+    true; \
+  elif test -n '$(MAKE_VERSION)' && test -n '$(CURDIR)'; then \
+    true; \
+  else \
+    false; \
+  fi; \
+}
 am__make_running_with_option = \
   case $${target_option-} in \
       ?) ;; \
@@ -96,22 +106,20 @@ PRE_UNINSTALL = :
 POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
-DIST_COMMON = $(top_srcdir)/config/commence.am \
-	$(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
-	$(srcdir)/Makefile.am $(top_srcdir)/bin/mkinstalldirs \
-	$(srcdir)/h5cc.in $(srcdir)/testh5mkgrp.sh.in \
-	$(srcdir)/testh5repart.sh.in $(top_srcdir)/bin/depcomp \
-	$(top_srcdir)/bin/test-driver
 check_PROGRAMS = $(am__EXEEXT_1) repart_test$(EXEEXT)
 bin_PROGRAMS = h5debug$(EXEEXT) h5repart$(EXEEXT) h5mkgrp$(EXEEXT)
 TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT)
 subdir = tools/misc
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \
-	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac
+	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/m4/libtool.m4 \
+	$(top_srcdir)/m4/ltoptions.m4 $(top_srcdir)/m4/ltsugar.m4 \
+	$(top_srcdir)/m4/ltversion.m4 $(top_srcdir)/m4/lt~obsolete.m4 \
+	$(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
-mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
+mkinstalldirs = $(install_sh) -d
 CONFIG_HEADER = $(top_builddir)/src/H5config.h \
 	$(top_builddir)/fortran/src/H5config_f.inc
 CONFIG_CLEAN_FILES = h5cc testh5mkgrp.sh testh5repart.sh
@@ -437,6 +445,11 @@ TEST_LOGS = $(am__test_logs2:.sh.log=.log)
 SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/bin/test-driver
 SH_LOG_COMPILE = $(SH_LOG_COMPILER) $(AM_SH_LOG_FLAGS) $(SH_LOG_FLAGS)
 DIST_SUBDIRS = $(SUBDIRS)
+am__DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/h5cc.in \
+	$(srcdir)/testh5mkgrp.sh.in $(srcdir)/testh5repart.sh.in \
+	$(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver \
+	$(top_srcdir)/config/commence.am \
+	$(top_srcdir)/config/conclude.am
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 am__relativize = \
   dir0=`pwd`; \
@@ -481,7 +494,6 @@ AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
 AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
 AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
 AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
-AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AUTOCONF = @AUTOCONF@
 AUTOHEADER = @AUTOHEADER@
@@ -579,6 +591,7 @@ LL_PATH = @LL_PATH@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
+LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
 MAINT = @MAINT@
 MAKEINFO = @MAKEINFO@
 MANIFEST_TOOL = @MANIFEST_TOOL@
@@ -817,7 +830,6 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir
 	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/misc/Makefile'; \
 	$(am__cd) $(top_srcdir) && \
 	  $(AUTOMAKE) --foreign tools/misc/Makefile
-.PRECIOUS: Makefile
 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	@case '$?' in \
 	  *config.status*) \
@@ -826,7 +838,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
 	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
 	esac;
-$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am:
+$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__empty):
 
 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
@@ -1129,7 +1141,7 @@ $(TEST_SUITE_LOG): $(TEST_LOGS)
 	if test -n "$$am__remaking_logs"; then \
 	  echo "fatal: making $(TEST_SUITE_LOG): possible infinite" \
 	       "recursion detected" >&2; \
-	else \
+	elif test -n "$$redo_logs"; then \
 	  am__remaking_logs=yes $(MAKE) $(AM_MAKEFLAGS) $$redo_logs; \
 	fi; \
 	if $(am__make_dryrun); then :; else \
@@ -1450,6 +1462,8 @@ uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS \
 	pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am \
 	uninstall-binPROGRAMS uninstall-binSCRIPTS uninstall-local
 
+.PRECIOUS: Makefile
+
 
 # List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
 # This tells the Makefiles that these targets are not files to be built but
diff --git a/tools/misc/h5debug.c b/tools/misc/h5debug.c
index 3789723..480450d 100644
--- a/tools/misc/h5debug.c
+++ b/tools/misc/h5debug.c
@@ -23,19 +23,19 @@
  *
  *-------------------------------------------------------------------------
  */
-#define H5A_PACKAGE     /*suppress error about including H5Apkg  */
-#define H5B2_PACKAGE    /*suppress error about including H5B2pkg */
-#define H5B2_TESTING    /*suppress warning about H5B2 testing funcs*/
-#define H5D_PACKAGE     /*suppress error about including H5Dpkg  */
-#define H5EA_PACKAGE    /*suppress error about including H5EApkg */
-#define H5EA_TESTING    /*suppress warning about H5EA testing funcs*/
-#define H5FA_PACKAGE    /*suppress error about including H5FApkg */
-#define H5FA_TESTING    /*suppress warning about H5FA testing funcs*/
-#define H5F_PACKAGE     /*suppress error about including H5Fpkg  */
-#define H5G_PACKAGE     /*suppress error about including H5Gpkg  */
-#define H5HF_PACKAGE    /*suppress error about including H5HFpkg */
-#define H5O_PACKAGE     /*suppress error about including H5Opkg  */
-#define H5SM_PACKAGE    /*suppress error about including H5SMpkg */
+#define H5A_FRIEND		/*suppress error about including H5Apkg  */
+#define H5B2_FRIEND		/*suppress error about including H5B2pkg */
+#define H5B2_TESTING		/*suppress warning about H5B2 testing funcs*/
+#define H5D_FRIEND		/*suppress error about including H5Dpkg  */
+#define H5EA_FRIEND		/*suppress error about including H5EApkg */
+#define H5EA_TESTING		/*suppress warning about H5EA testing funcs*/
+#define H5FA_FRIEND		/*suppress error about including H5FApkg */
+#define H5FA_TESTING		/*suppress warning about H5FA testing funcs*/
+#define H5F_FRIEND		/*suppress error about including H5Fpkg  */
+#define H5G_FRIEND		/*suppress error about including H5Gpkg  */
+#define H5HF_FRIEND		/*suppress error about including H5HFpkg */
+#define H5O_FRIEND		/*suppress error about including H5Opkg  */
+#define H5SM_FRIEND		/*suppress error about including H5SMpkg */
 
 #include "H5private.h"  /* Generic Functions    */
 #include "H5Apkg.h"     /* Attributes           */
diff --git a/tools/misc/talign.c b/tools/misc/talign.c
index 2d0a9d1..7eb4c50 100644
--- a/tools/misc/talign.c
+++ b/tools/misc/talign.c
@@ -37,11 +37,11 @@ const char *setname = "align";
 
 int main(void)
 {
-    hid_t fil,spc,set;
-    hid_t cs6, cmp, fix;
-    hid_t cmp1, cmp2, cmp3;
-    hid_t plist;
-    hid_t array_dt;
+    hid_t fil=-1, spc=-1, set=-1;
+    hid_t cs6=-1, cmp=-1, fix=-1;
+    hid_t cmp1=-1, cmp2=-1, cmp3=-1;
+    hid_t plist=-1;
+    hid_t array_dt=-1;
 
     hsize_t dim[2];
     hsize_t cdim[4];
@@ -137,6 +137,7 @@ int main(void)
 
     H5Dread(set, fix, spc, H5S_ALL, H5P_DEFAULT, data);
     fptr = (float *)(data + H5Tget_member_offset(fix, 1));
+    H5Dclose(set);
 
 out:
     if(error < 0) {
@@ -194,7 +195,9 @@ out:
     if(data)
         HDfree(data);
     H5Sclose(spc);
+    H5Tclose(cs6);
     H5Tclose(cmp);
+    H5Tclose(fix);
     H5Tclose(cmp1);
     H5Tclose(cmp2);
     H5Tclose(cmp3);
diff --git a/tools/misc/vds/Makefile.in b/tools/misc/vds/Makefile.in
index 8977925..e44f611 100644
--- a/tools/misc/vds/Makefile.in
+++ b/tools/misc/vds/Makefile.in
@@ -1,7 +1,7 @@
-# Makefile.in generated by automake 1.14.1 from Makefile.am.
+# Makefile.in generated by automake 1.15 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
+# Copyright (C) 1994-2014 Free Software Foundation, Inc.
 
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -31,7 +31,17 @@
 # HDF5 Library Makefile(.in)
 #
 VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
+am__is_gnu_make = { \
+  if test -z '$(MAKELEVEL)'; then \
+    false; \
+  elif test -n '$(MAKE_HOST)'; then \
+    true; \
+  elif test -n '$(MAKE_VERSION)' && test -n '$(CURDIR)'; then \
+    true; \
+  else \
+    false; \
+  fi; \
+}
 am__make_running_with_option = \
   case $${target_option-} in \
       ?) ;; \
@@ -94,19 +104,19 @@ PRE_UNINSTALL = :
 POST_UNINSTALL = :
 build_triplet = @build@
 host_triplet = @host@
-DIST_COMMON = $(top_srcdir)/config/commence.am \
-	$(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
-	$(srcdir)/Makefile.am $(top_srcdir)/bin/mkinstalldirs \
-	$(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver
 check_PROGRAMS = $(am__EXEEXT_1)
 TESTS = $(am__EXEEXT_1)
 subdir = tools/misc/vds
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \
-	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac
+	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/m4/libtool.m4 \
+	$(top_srcdir)/m4/ltoptions.m4 $(top_srcdir)/m4/ltsugar.m4 \
+	$(top_srcdir)/m4/ltversion.m4 $(top_srcdir)/m4/lt~obsolete.m4 \
+	$(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
-mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
+mkinstalldirs = $(install_sh) -d
 CONFIG_HEADER = $(top_builddir)/src/H5config.h \
 	$(top_builddir)/fortran/src/H5config_f.inc
 CONFIG_CLEAN_FILES =
@@ -402,6 +412,9 @@ am__test_logs2 = $(am__test_logs1:@EXEEXT@.log=.log)
 TEST_LOGS = $(am__test_logs2:.sh.log=.log)
 SH_LOG_DRIVER = $(SHELL) $(top_srcdir)/bin/test-driver
 SH_LOG_COMPILE = $(SH_LOG_COMPILER) $(AM_SH_LOG_FLAGS) $(SH_LOG_FLAGS)
+am__DIST_COMMON = $(srcdir)/Makefile.in $(top_srcdir)/bin/depcomp \
+	$(top_srcdir)/bin/test-driver $(top_srcdir)/config/commence.am \
+	$(top_srcdir)/config/conclude.am
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 ACLOCAL = @ACLOCAL@
 ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
@@ -421,7 +434,6 @@ AM_CXXFLAGS = @AM_CXXFLAGS@ @H5_CXXFLAGS@
 AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
 AM_FCFLAGS = @AM_FCFLAGS@ @H5_FCFLAGS@
 AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@
-AM_MAKEFLAGS = @AM_MAKEFLAGS@
 AR = @AR@
 AUTOCONF = @AUTOCONF@
 AUTOHEADER = @AUTOHEADER@
@@ -519,6 +531,7 @@ LL_PATH = @LL_PATH@
 LN_S = @LN_S@
 LTLIBOBJS = @LTLIBOBJS@
 LT_STATIC_EXEC = @LT_STATIC_EXEC@
+LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
 MAINT = @MAINT@
 MAKEINFO = @MAKEINFO@
 MANIFEST_TOOL = @MANIFEST_TOOL@
@@ -735,7 +748,6 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir
 	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/misc/vds/Makefile'; \
 	$(am__cd) $(top_srcdir) && \
 	  $(AUTOMAKE) --foreign tools/misc/vds/Makefile
-.PRECIOUS: Makefile
 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	@case '$?' in \
 	  *config.status*) \
@@ -744,7 +756,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
 	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
 	esac;
-$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am:
+$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__empty):
 
 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
 	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
@@ -905,7 +917,7 @@ $(TEST_SUITE_LOG): $(TEST_LOGS)
 	if test -n "$$am__remaking_logs"; then \
 	  echo "fatal: making $(TEST_SUITE_LOG): possible infinite" \
 	       "recursion detected" >&2; \
-	else \
+	elif test -n "$$redo_logs"; then \
 	  am__remaking_logs=yes $(MAKE) $(AM_MAKEFLAGS) $$redo_logs; \
 	fi; \
 	if $(am__make_dryrun); then :; else \
@@ -1211,6 +1223,8 @@ uninstall-am:
 	mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \
 	pdf-am ps ps-am recheck tags tags-am uninstall uninstall-am
 
+.PRECIOUS: Makefile
+
 
 # List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
 # This tells the Makefiles that these targets are not files to be built but
diff --git a/tools/perform/Makefile.in b/tools/perform/Makefile.in
deleted file mode 100644
index dbac43e..0000000
--- a/tools/perform/Makefile.in
+++ /dev/null
@@ -1,1549 +0,0 @@
-# Makefile.in generated by automake 1.14.1 from Makefile.am.
-# @configure_input@
-
-# Copyright (C) 1994-2013 Free Software Foundation, Inc.
-
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-@SET_MAKE@
-
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html.  COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page.  It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
-# access to either file, you may request a copy from help@hdfgroup.org.
-#
-# HDF5 Library Performance Makefile(.in)
-#
-
-VPATH = @srcdir@
-am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
-am__make_running_with_option = \
-  case $${target_option-} in \
-      ?) ;; \
-      *) echo "am__make_running_with_option: internal error: invalid" \
-              "target option '$${target_option-}' specified" >&2; \
-         exit 1;; \
-  esac; \
-  has_opt=no; \
-  sane_makeflags=$$MAKEFLAGS; \
-  if $(am__is_gnu_make); then \
-    sane_makeflags=$$MFLAGS; \
-  else \
-    case $$MAKEFLAGS in \
-      *\\[\ \	]*) \
-        bs=\\; \
-        sane_makeflags=`printf '%s\n' "$$MAKEFLAGS" \
-          | sed "s/$$bs$$bs[$$bs $$bs	]*//g"`;; \
-    esac; \
-  fi; \
-  skip_next=no; \
-  strip_trailopt () \
-  { \
-    flg=`printf '%s\n' "$$flg" | sed "s/$$1.*$$//"`; \
-  }; \
-  for flg in $$sane_makeflags; do \
-    test $$skip_next = yes && { skip_next=no; continue; }; \
-    case $$flg in \
-      *=*|--*) continue;; \
-        -*I) strip_trailopt 'I'; skip_next=yes;; \
-      -*I?*) strip_trailopt 'I';; \
-        -*O) strip_trailopt 'O'; skip_next=yes;; \
-      -*O?*) strip_trailopt 'O';; \
-        -*l) strip_trailopt 'l'; skip_next=yes;; \
-      -*l?*) strip_trailopt 'l';; \
-      -[dEDm]) skip_next=yes;; \
-      -[JT]) skip_next=yes;; \
-    esac; \
-    case $$flg in \
-      *$$target_option*) has_opt=yes; break;; \
-    esac; \
-  done; \
-  test $$has_opt = yes
-am__make_dryrun = (target_option=n; $(am__make_running_with_option))
-am__make_keepgoing = (target_option=k; $(am__make_running_with_option))
-pkgdatadir = $(datadir)/@PACKAGE@
-pkgincludedir = $(includedir)/@PACKAGE@
-pkglibdir = $(libdir)/@PACKAGE@
-pkglibexecdir = $(libexecdir)/@PACKAGE@
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = @build@
-host_triplet = @host@
-DIST_COMMON = $(top_srcdir)/config/commence.am \
-	$(top_srcdir)/config/conclude.am $(srcdir)/Makefile.in \
-	$(srcdir)/Makefile.am $(top_srcdir)/bin/mkinstalldirs \
-	$(top_srcdir)/bin/depcomp $(top_srcdir)/bin/test-driver \
-	COPYING
-@BUILD_PARALLEL_CONDITIONAL_FALSE@bin_PROGRAMS =  \
-@BUILD_PARALLEL_CONDITIONAL_FALSE@	h5perf_serial$(EXEEXT)
-@BUILD_PARALLEL_CONDITIONAL_TRUE@bin_PROGRAMS =  \
-@BUILD_PARALLEL_CONDITIONAL_TRUE@	h5perf_serial$(EXEEXT) \
-@BUILD_PARALLEL_CONDITIONAL_TRUE@	h5perf$(EXEEXT)
-check_PROGRAMS = iopipe$(EXEEXT) chunk$(EXEEXT) overhead$(EXEEXT) \
-	zip_perf$(EXEEXT) perf_meta$(EXEEXT) $(am__EXEEXT_2) \
-	perf$(EXEEXT)
-TESTS = $(am__EXEEXT_3)
-subdir = tools/perform
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/aclocal_cxx.m4 \
-	$(top_srcdir)/m4/aclocal_fc.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
-CONFIG_HEADER = $(top_builddir)/src/H5config.h \
-	$(top_builddir)/fortran/src/H5config_f.inc
-CONFIG_CLEAN_FILES =
-CONFIG_CLEAN_VPATH_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-am__EXEEXT_1 =
-@BUILD_ALL_CONDITIONAL_TRUE@am__EXEEXT_2 = $(am__EXEEXT_1)
-PROGRAMS = $(bin_PROGRAMS)
-chunk_SOURCES = chunk.c
-chunk_OBJECTS = chunk.$(OBJEXT)
-chunk_LDADD = $(LDADD)
-chunk_DEPENDENCIES = $(LIBHDF5)
-AM_V_lt = $(am__v_lt_@AM_V@)
-am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
-am__v_lt_0 = --silent
-am__v_lt_1 = 
-am_h5perf_OBJECTS = pio_perf.$(OBJEXT) pio_engine.$(OBJEXT)
-h5perf_OBJECTS = $(am_h5perf_OBJECTS)
-h5perf_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5)
-h5perf_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
-	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
-	$(h5perf_LDFLAGS) $(LDFLAGS) -o $@
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-	      elif test "X$(CXX_API)" = "Xyes"; then \
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-	         && touch $${chkname} || \
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-	         (cat $${log} && false) || exit 1; \
-	      echo "" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
-	      echo "============================" >> $${log}; \
-	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
-	      cat $${log}; \
-	   fi; \
-	   echo "============================"; \
-	fi
-
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-	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
-	fi
-	@if test -n "$(TEST_PROG_PARA)"; then                                \
-	    echo "**** Hint ****";                                            \
-	    echo "Parallel test files reside in the current directory"        \
-	         "by default.";                                               \
-	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
-	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
-	    echo "    export HDF5_PARAPREFIX";                                \
-	    echo "    make check";                                            \
-	    echo "**** end of Hint ****";                                     \
-	fi
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-	   if test $$test != dummy; then                                      \
-	      $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
-	      RUNEXEC="$(RUNPARALLEL)" || exit 1; \
-	   fi;                                                                \
-	done
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-	  if test $$test != dummy; then                                      \
-	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
-	  fi;                                                                 \
-	done
-	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
-	    echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
-	fi
-
-# Run test with different Virtual File Driver
-check-vfd: $(LIB) $(PROGS) $(chk_TESTS)
-	@for vfd in $(VFD_LIST) dummy; do                                     \
-	    if test $$vfd != dummy; then                                      \
-	        echo "============================";                          \
-	        echo "Testing Virtual File Driver $$vfd";                     \
-	        echo "============================";                          \
-	        $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1;                \
-	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1;    \
-	    fi;                                                               \
-	done
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
diff --git a/tools/perform/perf_meta.c b/tools/perform/perf_meta.c
index b52871e..2c3a19c 100644
--- a/tools/perform/perf_meta.c
+++ b/tools/perform/perf_meta.c
@@ -821,7 +821,7 @@ main(int argc, char **argv)
     if (H5Sclose(space) < 0) goto error;
     if (H5Sclose(small_space) < 0) goto error;
 
-    h5_cleanup(FILENAME, fapl);
+    h5_clean_files(FILENAME, fapl);
 
 #ifdef H5_HAVE_PARALLEL
     if(facc_type == FACC_MPIO)
diff --git a/tools/perform/pio_perf.c b/tools/perform/pio_perf.c
index 4db2249..509513b 100644
--- a/tools/perform/pio_perf.c
+++ b/tools/perform/pio_perf.c
@@ -1673,60 +1673,8 @@ usage(const char *prog)
         printf("  HDF5_MPI_INFO    MPI INFO object key=value separated by ;\n");
         printf("  HDF5_PARAPREFIX  Paralllel data files prefix\n");
         fflush(stdout);
-    }
-}
-
-void debug_start_stop_time(io_time_t *pt, timer_type t, int start_stop)
-{
-#if 1
-        if (pio_debug_level >= 4) {
-            const char *msg;
-            int myrank;
-
-            MPI_Comm_rank(pio_comm_g, &myrank);
-
-            switch (t) {
-            case HDF5_FILE_OPENCLOSE:
-                msg = "File Open/Close";
-                break;
-            case HDF5_DATASET_CREATE:
-                msg = "Dataset Create";
-                break;
-            case HDF5_MPI_WRITE:
-                msg = "MPI Write";
-                break;
-            case HDF5_MPI_READ:
-                msg = "MPI Read";
-                break;
-            case HDF5_FINE_WRITE_FIXED_DIMS:
-                msg = "Fine Write";
-                break;
-            case HDF5_FINE_READ_FIXED_DIMS:
-                msg = "Fine Read";
-                break;
-            case HDF5_GROSS_WRITE_FIXED_DIMS:
-                msg = "Gross Write";
-                break;
-            case HDF5_GROSS_READ_FIXED_DIMS:
-                msg = "Gross Read";
-                break;
-            case HDF5_RAW_WRITE_FIXED_DIMS:
-                msg = "Raw Write";
-                break;
-            case HDF5_RAW_READ_FIXED_DIMS:
-                msg = "Raw Read";
-                break;
-            default:
-                msg = "Unknown Timer";
-                break;
-            }
-
-            fprintf(output, "    Proc %d: %s %s: %.2f\n", myrank, msg,
-                    (start_stop == TSTART ? "Start" : "Stop"),
-                    pt->total_time[t]);
-        }
-#endif
-} /* debug_start_stop_time */
+    } /* end if */
+} /* end usage() */
 
 #else /* H5_HAVE_PARALLEL */
 
@@ -1736,13 +1684,12 @@ void debug_start_stop_time(io_time_t *pt, timer_type t, int start_stop)
  *              parallel stuff.
  * Return:      EXIT_SUCCESS
  * Programmer:  Bill Wendling, 14. November 2001
- * Modifications:
  */
 int
 main(void)
 {
     printf("No parallel IO performance because parallel is not configured\n");
     return EXIT_SUCCESS;
-}
+} /* end main */
 
 #endif /* !H5_HAVE_PARALLEL */
diff --git a/tools/perform/sio_perf.c b/tools/perform/sio_perf.c
index 34d8552..a69e929 100644
--- a/tools/perform/sio_perf.c
+++ b/tools/perform/sio_perf.c
@@ -1405,56 +1405,5 @@ usage(const char *prog)
         printf("      HDF5_PREFIX      Data file prefix\n");
         printf("\n");
         fflush(stdout);
-}
-
-void debug_start_stop_time(io_time_t *pt, timer_type t, int start_stop)
-{
-        if (sio_debug_level >= 4) {
-            const char *msg;
-
-            switch (t) {
-            case HDF5_FILE_OPENCLOSE:
-                msg = "File Open/Close";
-                break;
-            case HDF5_DATASET_CREATE:
-                msg = "Dataset Create";
-                break;
-            case HDF5_MPI_WRITE:
-                msg = "MPI Write";
-                break;
-            case HDF5_MPI_READ:
-                msg = "MPI Read";
-                break;
-            case HDF5_FINE_WRITE_FIXED_DIMS:
-                msg = "Fine Write";
-                break;
-            case HDF5_FINE_READ_FIXED_DIMS:
-                msg = "Fine Read";
-                break;
-            case HDF5_GROSS_WRITE_FIXED_DIMS:
-                msg = "Gross Write";
-                break;
-            case HDF5_GROSS_READ_FIXED_DIMS:
-                msg = "Gross Read";
-                break;
-            case HDF5_RAW_WRITE_FIXED_DIMS:
-                msg = "Raw Write";
-                break;
-            case HDF5_RAW_READ_FIXED_DIMS:
-                msg = "Raw Read";
-                break;
-            case HDF5_FILE_READ_OPEN:
-            case HDF5_FILE_READ_CLOSE:
-            case HDF5_FILE_WRITE_OPEN:
-            case HDF5_FILE_WRITE_CLOSE:
-            default:
-                msg = "Unknown Timer";
-                break;
-            }
-
-            fprintf(output, "    %s %s: %.2f\n", msg,
-                    (start_stop == TSTART ? "Start" : "Stop"),
-                    pt->total_time[t]);
-        }
-} /* debug_start_stop_time */
+} /* end usage() */