[svn-r12482] new tool h5copy

it uses the API function H5Gcopy to copy groups and datasets from file
to file, read from a command line

note: the test script is not finished yet
tested on heping, copper, shanti

6 files changed, 1290 insertions, 2 deletions

diff --git a/tools/Makefile.am b/tools/Makefile.am
index ab89309..17e0bd8 100644
--- a/tools/Makefile.am
+++ b/tools/Makefile.am
@@ -21,6 +21,6 @@
 include $(top_srcdir)/config/commence.am
 
 # All subdirectories
-SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam
+SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy
 
 include $(top_srcdir)/config/conclude.am
diff --git a/tools/Makefile.in b/tools/Makefile.in
index 6f8a7dd..94ec5e3 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -306,7 +306,7 @@ TRACE = perl $(top_srcdir)/bin/trace
 CHECK_CLEANFILES = *.chkexe *.chklog *.clog
 
 # All subdirectories
-SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam
+SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy
 
 # Automake needs to be taught how to build lib, progs, and tests targets.
 # These will be filled in automatically for the most part (e.g.,
diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am
new file mode 100644
index 0000000..9632c1b
--- /dev/null
+++ b/tools/h5copy/Makefile.am
@@ -0,0 +1,36 @@
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src and tools/lib directories
+INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_SCRIPT=$(srcdir)/testh5copy.sh
+check_SCRIPTS=$(TEST_SCRIPT)
+SCRIPT_DEPEND=h5copy$(EXEEXT)
+
+# This is our main target, the h5copy tool
+bin_PROGRAMS=h5copy
+
+# All programs depend on the hdf5 and h5tools libraries
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in
new file mode 100644
index 0000000..8860b86
--- /dev/null
+++ b/tools/h5copy/Makefile.in
@@ -0,0 +1,833 @@
+# Makefile.in generated by automake 1.9.5 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+@SET_MAKE@
+
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# HDF5 Library Makefile(.in)
+#
+
+SOURCES = h5copy.c
+
+srcdir = @srcdir@
+top_srcdir = @top_srcdir@
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+top_builddir = ../..
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+INSTALL = @INSTALL@
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
+	$(top_srcdir)/config/commence.am \
+	$(top_srcdir)/config/conclude.am
+bin_PROGRAMS = h5copy$(EXEEXT)
+subdir = tools/h5copy
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/configure.in
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs
+CONFIG_HEADER = $(top_builddir)/src/H5config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binPROGRAMS_INSTALL = $(INSTALL_PROGRAM)
+PROGRAMS = $(bin_PROGRAMS)
+h5copy_SOURCES = h5copy.c
+h5copy_OBJECTS = h5copy.$(OBJEXT)
+h5copy_LDADD = $(LDADD)
+am__DEPENDENCIES_1 = $(top_builddir)/tools/lib/libh5tools.la
+am__DEPENDENCIES_2 = $(top_builddir)/src/libhdf5.la
+h5copy_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2)
+DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir)/src
+depcomp = $(SHELL) $(top_srcdir)/bin/depcomp
+am__depfiles_maybe = depfiles
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \
+	$(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
+	$(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+SOURCES = h5copy.c
+DIST_SOURCES = h5copy.c
+ETAGS = etags
+CTAGS = ctags
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+
+# Set the paths for AFS installs of autotools for Linux machines
+# Ideally, these tools should never be needed during the build.
+ACLOCAL = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/aclocal -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal
+ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@
+AMDEP_FALSE = @AMDEP_FALSE@
+AMDEP_TRUE = @AMDEP_TRUE@
+AMTAR = @AMTAR@
+AM_MAKEFLAGS = @AM_MAKEFLAGS@
+AR = @AR@
+AUTOCONF = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoconf
+AUTOHEADER = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoheader
+AUTOMAKE = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/automake
+AWK = @AWK@
+BUILD_ALL_CONDITIONAL_FALSE = @BUILD_ALL_CONDITIONAL_FALSE@
+BUILD_ALL_CONDITIONAL_TRUE = @BUILD_ALL_CONDITIONAL_TRUE@
+BUILD_CXX_CONDITIONAL_FALSE = @BUILD_CXX_CONDITIONAL_FALSE@
+BUILD_CXX_CONDITIONAL_TRUE = @BUILD_CXX_CONDITIONAL_TRUE@
+BUILD_FORTRAN_CONDITIONAL_FALSE = @BUILD_FORTRAN_CONDITIONAL_FALSE@
+BUILD_FORTRAN_CONDITIONAL_TRUE = @BUILD_FORTRAN_CONDITIONAL_TRUE@
+BUILD_HDF5_HL_CONDITIONAL_FALSE = @BUILD_HDF5_HL_CONDITIONAL_FALSE@
+BUILD_HDF5_HL_CONDITIONAL_TRUE = @BUILD_HDF5_HL_CONDITIONAL_TRUE@
+BUILD_PABLO_CONDITIONAL_FALSE = @BUILD_PABLO_CONDITIONAL_FALSE@
+BUILD_PABLO_CONDITIONAL_TRUE = @BUILD_PABLO_CONDITIONAL_TRUE@
+BUILD_PARALLEL_CONDITIONAL_FALSE = @BUILD_PARALLEL_CONDITIONAL_FALSE@
+BUILD_PARALLEL_CONDITIONAL_TRUE = @BUILD_PARALLEL_CONDITIONAL_TRUE@
+BYTESEX = @BYTESEX@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CC_VERSION = @CC_VERSION@
+
+# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5,
+# but which shouldn't be exported to h5cc for building other programs.
+CFLAGS = @CFLAGS@ @H5_CFLAGS@
+CONFIG_DATE = @CONFIG_DATE@
+CONFIG_MODE = @CONFIG_MODE@
+CONFIG_USER = @CONFIG_USER@
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@
+CXX_SHARED_CONDITIONAL_FALSE = @CXX_SHARED_CONDITIONAL_FALSE@
+CXX_SHARED_CONDITIONAL_TRUE = @CXX_SHARED_CONDITIONAL_TRUE@
+CYGPATH_W = @CYGPATH_W@
+DEBUG_PKG = @DEBUG_PKG@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+DYNAMIC_DIRS = @DYNAMIC_DIRS@
+ECHO = @ECHO@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
+ECHO_T = @ECHO_T@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+F77 = @F77@
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT = @F9XMODEXT@
+F9XMODFLAG = @F9XMODFLAG@
+F9XSUFFIXFLAG = @F9XSUFFIXFLAG@
+FC = @FC@
+FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@
+FCLIBS = @FCLIBS@
+FFLAGS = @FFLAGS@
+FILTERS = @FILTERS@
+FORTRAN_SHARED_CONDITIONAL_FALSE = @FORTRAN_SHARED_CONDITIONAL_FALSE@
+FORTRAN_SHARED_CONDITIONAL_TRUE = @FORTRAN_SHARED_CONDITIONAL_TRUE@
+FSEARCH_DIRS = @FSEARCH_DIRS@
+H5_CFLAGS = @H5_CFLAGS@
+H5_CPPFLAGS = @H5_CPPFLAGS@
+H5_CXXFLAGS = @H5_CXXFLAGS@
+H5_FCFLAGS = @H5_FCFLAGS@
+H5_LONE_COLON = @H5_LONE_COLON@
+H5_VERSION = @H5_VERSION@
+HADDR_T = @HADDR_T@
+HDF5_INTERFACES = @HDF5_INTERFACES@
+HID_T = @HID_T@
+HL = @HL@
+HL_FOR = @HL_FOR@
+HSIZET = @HSIZET@
+HSIZE_T = @HSIZE_T@
+HSSIZE_T = @HSSIZE_T@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@
+LDFLAGS = @LDFLAGS@
+LIBOBJS = @LIBOBJS@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
+LT_STATIC_EXEC = @LT_STATIC_EXEC@
+MAINT = @MAINT@
+MAINTAINER_MODE_FALSE = @MAINTAINER_MODE_FALSE@
+MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@
+MAKEINFO = @MAKEINFO@
+MPE = @MPE@
+OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@
+OBJEXT = @OBJEXT@
+PACKAGE = @PACKAGE@
+PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
+PACKAGE_NAME = @PACKAGE_NAME@
+PACKAGE_STRING = @PACKAGE_STRING@
+PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_VERSION = @PACKAGE_VERSION@
+PARALLEL = @PARALLEL@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+PERL = @PERL@
+PTHREAD = @PTHREAD@
+RANLIB = @RANLIB@
+ROOT = @ROOT@
+RUNPARALLEL = @RUNPARALLEL@
+RUNSERIAL = @RUNSERIAL@
+R_INTEGER = @R_INTEGER@
+R_LARGE = @R_LARGE@
+SEARCH = @SEARCH@
+SETX = @SETX@
+SET_MAKE = @SET_MAKE@
+
+# Hardcode SHELL to be /bin/sh.  Most machines have this shell, and
+# on at least one machine configure fails to detect its existence (janus).
+# Also, when HDF5 is configured on one machine but run on another,
+# configure's automatic SHELL detection may not work on the build machine.
+SHELL = /bin/sh
+SIZE_T = @SIZE_T@
+STATIC_SHARED = @STATIC_SHARED@
+STRIP = @STRIP@
+TESTPARALLEL = @TESTPARALLEL@
+TRACE_API = @TRACE_API@
+USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@
+USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@
+USE_FILTER_NBIT = @USE_FILTER_NBIT@
+USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@
+USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@
+USE_FILTER_SZIP = @USE_FILTER_SZIP@
+VERSION = @VERSION@
+ac_ct_AR = @ac_ct_AR@
+ac_ct_CC = @ac_ct_CC@
+ac_ct_CXX = @ac_ct_CXX@
+ac_ct_F77 = @ac_ct_F77@
+ac_ct_FC = @ac_ct_FC@
+ac_ct_RANLIB = @ac_ct_RANLIB@
+ac_ct_STRIP = @ac_ct_STRIP@
+am__fastdepCC_FALSE = @am__fastdepCC_FALSE@
+am__fastdepCC_TRUE = @am__fastdepCC_TRUE@
+am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@
+am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@
+am__include = @am__include@
+am__leading_dot = @am__leading_dot@
+am__quote = @am__quote@
+am__tar = @am__tar@
+am__untar = @am__untar@
+bindir = @bindir@
+build = @build@
+build_alias = @build_alias@
+build_cpu = @build_cpu@
+build_os = @build_os@
+build_vendor = @build_vendor@
+datadir = @datadir@
+exec_prefix = @exec_prefix@
+host = @host@
+host_alias = @host_alias@
+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+infodir = @infodir@
+install_sh = @install_sh@
+libdir = @libdir@
+libexecdir = @libexecdir@
+localstatedir = @localstatedir@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
+sysconfdir = @sysconfdir@
+target_alias = @target_alias@
+
+# Shell commands used in Makefiles
+RM = rm -f
+CP = cp
+TIME = time
+
+# Some machines need a command to run executables; this is that command
+# so that our tests will run.
+# We use RUNTESTS instead of RUNSERIAL directly because it may be that
+# some tests need to be run with a different command.  Older versions
+# of the makefiles used the command
+# $(LIBTOOL) --mode=execute
+# in some directories, for instance.
+RUNTESTS = $(RUNSERIAL)
+
+# Libraries to link to while building
+LIBHDF5 = $(top_builddir)/src/libhdf5.la
+LIBH5TEST = $(top_builddir)/test/libh5test.la
+LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+# If only shared libraries have been installed, have h5cc build examples with
+# shared libraries instead of static libraries
+H5CC = $(bindir)/h5cc $(H5CCFLAGS)
+H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
+H5FC = $(bindir)/h5fc $(H5CCFLAGS)
+H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
+H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+
+# The trace script; this is used on source files from the C library to
+# insert tracing macros.
+TRACE = perl $(top_srcdir)/bin/trace
+
+# .chkexe files are used to mark tests that have run successfully.
+# .chklog files are output from those tests.
+# *.clog are from the MPE option.
+CHECK_CLEANFILES = *.chkexe *.chklog *.clog
+
+# Include src and tools/lib directories
+INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# Test programs and scripts
+TEST_SCRIPT = $(srcdir)/testh5copy.sh
+check_SCRIPTS = $(TEST_SCRIPT)
+SCRIPT_DEPEND = h5copy$(EXEEXT)
+
+# All programs depend on the hdf5 and h5tools libraries
+LDADD = $(LIBH5TOOLS) $(LIBHDF5)
+
+# Automake needs to be taught how to build lib, progs, and tests targets.
+# These will be filled in automatically for the most part (e.g.,
+# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and
+# EXTRA_TEST variables are supplied to allow the user to force targets to
+# be built at certain times. 
+LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES)                 \
+      $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB)
+
+PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS)   \
+        $(EXTRA_PROG)
+
+TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) 
+TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_)
+TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_)
+TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_)
+TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_)
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .c .lo .o .obj
+$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
+		&& exit 0; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign  tools/h5copy/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --foreign  tools/h5copy/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binPROGRAMS: $(bin_PROGRAMS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(mkdir_p) "$(DESTDIR)$(bindir)"
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  if test -f $$p \
+	     || test -f $$p1 \
+	  ; then \
+	    f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \
+	   echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	   $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \
+	  else :; fi; \
+	done
+
+uninstall-binPROGRAMS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+
+clean-binPROGRAMS:
+	@list='$(bin_PROGRAMS)'; for p in $$list; do \
+	  f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \
+	  echo " rm -f $$p $$f"; \
+	  rm -f $$p $$f ; \
+	done
+h5copy$(EXEEXT): $(h5copy_OBJECTS) $(h5copy_DEPENDENCIES) 
+	@rm -f h5copy$(EXEEXT)
+	$(LINK) $(h5copy_LDFLAGS) $(h5copy_OBJECTS) $(h5copy_LDADD) $(LIBS)
+
+mostlyclean-compile:
+	-rm -f *.$(OBJEXT)
+
+distclean-compile:
+	-rm -f *.tab.c
+
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5copy.Po@am__quote@
+
+.c.o:
+@am__fastdepCC_TRUE@	if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \
+@am__fastdepCC_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
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+.c.obj:
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+@am__fastdepCC_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
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+@am__fastdepCC_TRUE@	if $(LTCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \
+@am__fastdepCC_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Plo"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
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+@am__fastdepCC_FALSE@	$(LTCOMPILE) -c -o $@ $<
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+mostlyclean-libtool:
+	-rm -f *.lo
+
+clean-libtool:
+	-rm -rf .libs _libs
+
+distclean-libtool:
+	-rm -f libtool
+uninstall-info-am:
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+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	mkid -fID $$unique
+tags: TAGS
+
+TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
+	  test -n "$$unique" || unique=$$empty_fix; \
+	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	    $$tags $$unique; \
+	fi
+ctags: CTAGS
+CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '    { files[$$0] = 1; } \
+	       END { for (i in files) print i; }'`; \
+	test -z "$(CTAGS_ARGS)$$tags$$unique" \
+	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+	$(mkdir_p) $(distdir)/../../config
+	@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's|.|.|g'`; \
+	list='$(DISTFILES)'; for file in $$list; do \
+	  case $$file in \
+	    $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
+	    $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
+	  esac; \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
+	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
+	    dir="/$$dir"; \
+	    $(mkdir_p) "$(distdir)$$dir"; \
+	  else \
+	    dir=''; \
+	  fi; \
+	  if test -d $$d/$$file; then \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+	$(MAKE) $(AM_MAKEFLAGS) $(check_SCRIPTS)
+	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
+check: check-am
+all-am: Makefile $(PROGRAMS) all-local
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(mkdir_p) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-libtool distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-info: install-info-am
+
+install-man:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+	mostlyclean-libtool mostlyclean-local
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binPROGRAMS uninstall-info-am
+
+.PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \
+	clean clean-binPROGRAMS clean-generic clean-libtool ctags \
+	distclean distclean-compile distclean-generic \
+	distclean-libtool distclean-tags distdir dvi dvi-am html \
+	html-am info info-am install install-am install-binPROGRAMS \
+	install-data install-data-am install-exec install-exec-am \
+	install-info install-info-am install-man install-strip \
+	installcheck installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-compile \
+	mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \
+	pdf-am ps ps-am tags uninstall uninstall-am \
+	uninstall-binPROGRAMS uninstall-info-am
+
+
+# List all build rules defined by HDF5 Makefiles as "PHONY" targets here.
+# This tells the Makefiles that these targets are not files to be built but
+# commands that should be executed even if a file with the same name already
+# exists.
+.PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
+        build-tests check-clean check-install check-p check-s check-vfd \
+        install-doc lib progs tests uninstall-doc _exec_check-s _test
+
+# lib/progs/tests targets recurse into subdirectories. build-* targets
+# build files in this directory.
+build-lib: $(LIB)
+build-progs: $(LIB) $(PROGS)
+build-tests: $(LIB) $(PROGS) $(TESTS)
+
+# General rule for recursive building targets.
+# BUILT_SOURCES contain targets that need to be built before anything else
+# in the directory (e.g., for Fortran type detection)
+lib progs tests check-s check-p :: $(BUILT_SOURCES)
+	@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
+	@for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X && test $$d != .; then                           \
+	        (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;     \
+	    fi;                                                               \
+	done
+
+# General rule for recursive cleaning targets.  Like the rule above,
+# but doesn't require building BUILT_SOURCES.
+check-clean ::
+	@$(MAKE) $(AM_MAKEFLAGS) build-$@ || exit 1;
+	@for d in X $(SUBDIRS); do                                             \
+	    if test $$d != X && test $$d != .; then                           \
+	        (set -x; cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;     \
+	    fi;                                                               \
+	done
+
+# Tell Automake to build tests when the user types `make all' (this is
+# not its default behavior).  Also build EXTRA_LIB and EXTRA_PROG since
+# Automake won't build them automatically, either.
+all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS)
+
+# make install-doc doesn't do anything outside of doc directory, but
+# Makefiles should recognize it.
+# UPDATE: docs no longer reside in this build tree, so this target
+# is depreciated.
+install-doc uninstall-doc:
+	@echo "Nothing to be done."
+
+# clean up files generated by tests so they can be re-run.
+build-check-clean:
+	$(RM) $(CHECK_CLEANFILES)
+
+# run check-clean whenever mostlyclean is run
+mostlyclean-local: build-check-clean
+
+# check-install is just a synonym for installcheck
+check-install: installcheck
+
+# Run each test in order, passing $(TEST_FLAGS) to the program.
+# Since tests are done in a shell loop, "make -i" does apply inside it.
+# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop.
+# The timestamps give a rough idea how much time the tests use.
+#
+# Note that targets in TESTS (defined above) will be built when the user
+# types 'make tests' or 'make check', but only programs in TEST_PROG,
+# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed.
+check-TESTS: test
+
+test _test:
+	@$(MAKE) build-check-s
+	@$(MAKE) build-check-p
+
+# Actual execution of check-s.
+build-check-s: $(LIB) $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
+	   echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+	fi
+	@$(MAKE) $(AM_MAKEFLAGS) _exec_check-s
+	@if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then      \
+	    echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH)
+
+# The dummy.chkexe here prevents the target from being
+# empty if there are no tests in the current directory.
+# $${log} is the log file.
+# $${tname} is the name of test.
+$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_:
+	@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \
+	   tname=$(@:.chkexe_=)$(EXEEXT);\
+	   log=$(@:.chkexe_=.chklog); \
+	   echo "============================"; \
+	   if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \
+	      echo "No need to test $${tname} again."; \
+	   else \
+	      echo "============================" > $${log}; \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then \
+	         echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
+	         echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then \
+	         echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
+	         echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log};\
+	      else \
+	         echo "Testing $${tname} $(TEST_FLAGS)"; \
+	         echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+	      fi; \
+	      echo "============================" >> $${log}; \
+	      srcdir="$(srcdir)" \
+	         $(TIME) $(RUNTESTS) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \
+	         && touch $(@:.chkexe_=.chkexe) || \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
+	         (cat $${log} && false) || exit 1; \
+	      echo "" >> $${log}; \
+	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
+	      echo "============================" >> $${log}; \
+	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
+	      cat $${log}; \
+	   fi; \
+	   echo "============================"; \
+	fi
+
+# The dummysh.chkexe here prevents the target from being
+# empty if there are no tests in the current directory.
+# $${log} is the log file.
+# $${tname} is the name of test.
+$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_:
+	@if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \
+	   cmd=$(@:.chkexe_=);\
+	   tname=`basename $$cmd`;\
+	   chkname=`basename $(@:.chkexe_=.chkexe)`;\
+	   log=`basename $(@:.chkexe_=.chklog)`; \
+	   echo "============================"; \
+	   if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \
+	      echo "No need to test $${tname} again."; \
+	   else \
+	      echo "============================" > $${log}; \
+	      if test "X$(HDF_FORTRAN)" = "Xyes"; then \
+	         echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \
+	         echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+	      elif test "X$(HDF_CXX)" = "Xyes"; then \
+	         echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \
+	         echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+	      else \
+	         echo "Testing $${tname} $(TEST_FLAGS)"; \
+	         echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \
+	      fi; \
+	      echo "============================" >> $${log}; \
+	      RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)"           \
+	      srcdir="$(srcdir)" \
+	         $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \
+	         && touch $${chkname} || \
+	         (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
+	         (cat $${log} && false) || exit 1; \
+	      echo "" >> $${log}; \
+	      echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \
+	      echo "============================" >> $${log}; \
+	      echo "Finished testing $${tname} $(TEST_FLAGS)"; \
+	      cat $${log}; \
+	   fi; \
+	   echo "============================"; \
+	fi
+
+# Actual execution of check-p.
+build-check-p: $(LIB) $(PROGS) $(TESTS)
+	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
+	   echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \
+	fi
+	@if test -n "$(TEST_PROG_PARA)"; then                                \
+	    echo "**** Hint ****";                                            \
+	    echo "Parallel test files reside in the current directory"        \
+	         "by default.";                                               \
+	    echo "Set HDF5_PARAPREFIX to use another directory. E.g.,";       \
+	    echo "    HDF5_PARAPREFIX=/PFS/user/me";                          \
+	    echo "    export HDF5_PARAPREFIX";                                \
+	    echo "    make check";                                            \
+	    echo "**** end of Hint ****";                                     \
+	fi
+	@for test in $(TEST_PROG_PARA) dummy; do                             \
+	   if test $$test != dummy; then                                      \
+	      $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \
+	      RUNTESTS="$(RUNPARALLEL)" || exit 1; \
+	   fi;                                                                \
+	done
+	@for test in $(TEST_SCRIPT_PARA) dummy; do                           \
+	  if test $$test != dummy; then                                      \
+	    $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \
+	  fi;                                                                 \
+	done
+	@if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then      \
+	    echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\
+	fi
+
+# Run test with different Virtual File Driver
+check-vfd:
+	@for vfd in $(VFD_LIST) dummy; do                                     \
+	    if test $$vfd != dummy; then                                      \
+	        echo "============================";                          \
+	        echo "Testing Virtual File Driver $$vfd";                     \
+	        echo "============================";                          \
+	        HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check;              \
+	    fi;                                                               \
+	done
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c
new file mode 100644
index 0000000..604eb03
--- /dev/null
+++ b/tools/h5copy/h5copy.c
@@ -0,0 +1,355 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by the Board of Trustees of the University of Illinois.         *
+ * All rights reserved.                                                      *
+ *                                                                           *
+ * This file is part of HDF5.  The full HDF5 copyright notice, including     *
+ * terms governing use, modification, and redistribution, is contained in    *
+ * the files COPYING and Copyright.html.  COPYING can be found at the root   *
+ * of the source code distribution tree; Copyright.html can be found at the  *
+ * root level of an installed copy of the electronic HDF5 document set and   *
+ * is linked from the top-level documents page.  It can also be found at     *
+ * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have     *
+ * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#include "hdf5.h"
+#include "h5tools.h"
+#include "H5private.h"
+#include <string.h>
+#include <stdlib.h>
+
+const char *progname="h5copy";
+int   d_status;
+
+/*-------------------------------------------------------------------------
+ * Function: usage
+ *
+ * Purpose: Prints a usage message on stderr and then returns.
+ *
+ * Return: void
+ *
+ * Programmer:	Pedro Vicente Nunes, 7/8/2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+usage (void)
+{
+ fprintf(stderr, "\
+usage: h5copy [OPTIONS] [OBJECTS...]\n\
+   OBJECTS\n\
+      A pair of 2 HDF5 files (input and output). Each file name\n\
+      is optionally followed by a slash and an object\n\
+      name within the file (if no object is specified\n\
+      within the file then all objects are copied)\n\
+   OPTIONS\n\
+      -h               Print a usage message and exit\n\
+      -v               Print information about OBJECTS and OPTIONS\n\
+      -f               Flag type\n\n\
+      Flag type is one of the following strings:\n\n\
+      SHALLOW (Copy only immediate members for groups)\n\
+      SOFT (Expand soft links into new objects)\n\
+      EXT (Expand external links into new objects)\n\
+      REF (Copy objects that are pointed by references)\n\
+      ATTR (Copy object without copying attributes)\n\n\
+      These flag types correspond to the following API symbols\n\n\
+      H5G_COPY_SHALLOW_HIERARCHY_FLAG\n\
+      H5G_COPY_EXPAND_SOFT_LINK_FLAG\n\
+      H5G_COPY_EXPAND_EXT_LINK_FLAG\n\
+      H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG\n\
+      H5G_COPY_WITHOUT_ATTR_FLAG\n");
+}
+
+
+
+/*-------------------------------------------------------------------------
+ * Function:	parse_flag
+ *
+ * Purpose:	read the flag -f STRING
+ *
+ * STRING is one of the following (API symbol and description)
+ *
+ * SHALLOW  H5G_COPY_SHALLOW_HIERARCHY_FLAG:  Copy only immediate members for groups
+ * SOFT     H5G_COPY_EXPAND_SOFT_LINK_FLAG:  Expand soft links into new objects
+ * EXT      H5G_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects
+ * REF      H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references
+ * ATTR     H5G_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes 
+ *
+ * Return:	Success:    SUCCEED
+ *		       Failure:    FAIL
+ *
+ * Programmer:	Pedro Vicente Nunes, 7/8/2006
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+static int parse_flag(const char* str_flag, unsigned *flag)
+{
+ unsigned fla=0;
+
+ if (strcmp(str_flag,"SHALLOW")==0)
+ {
+  fla = H5G_COPY_SHALLOW_HIERARCHY_FLAG;
+ } 
+ else  if (strcmp(str_flag,"SOFT")==0)
+ {
+  fla = H5G_COPY_EXPAND_SOFT_LINK_FLAG;
+ }
+ else  if (strcmp(str_flag,"EXT")==0)
+ {
+  fla = H5G_COPY_EXPAND_EXT_LINK_FLAG;
+ }
+ else  if (strcmp(str_flag,"REF")==0)
+ {
+  fla = H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG;
+ }
+ else  if (strcmp(str_flag,"ATTR")==0)
+ {
+  fla = H5G_COPY_WITHOUT_ATTR_FLAG;
+ }
+ else
+ {
+  printf("Error in input flag\n");
+  return -1;
+ }
+
+ *flag = fla;
+
+ return 0;
+}
+
+
+
+
+/*-------------------------------------------------------------------------
+ * Function:	main
+ *
+ * Purpose:	main program
+ *
+ * Programmer:	Pedro Vicente Nunes
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int
+main (int argc, const char *argv[])
+{
+ hid_t        fid_src=-1;
+ hid_t        fid_dst=-1;
+ int          argno;
+ static char  root_name[] = "/";
+ char         *fname_src=NULL;
+ char         *fname_dst=NULL;
+ char         *oname_src=NULL;
+ char         *oname_dst=NULL;
+ char         *x;
+ unsigned     flag=0;
+ int          verbose=0;
+ hid_t        pid;	
+	char         str_flag[20];
+ 
+ /* switches come before non-switch arguments */
+ for (argno=1; argno<argc && '-'==argv[argno][0]; argno++) 
+ {
+  if (strcmp(argv[argno], "-h") == 0) 
+  {
+   usage();
+  }
+  else if (strcmp(argv[argno], "-v") == 0) 
+  {
+   verbose = 1;
+  }
+  else if (strcmp(argv[argno], "-f") == 0) 
+  {
+   /* parse flag */
+   if (parse_flag(argv[argno+1],&flag)<0)
+   {
+    usage();
+    exit(1);
+   }
+   strcpy(str_flag,argv[argno+1]);
+   
+   /* jump to next */
+   ++argno;
+  }
+ }
+
+
+ /* no more arguments remain */
+ if (argno>=argc) 
+ {
+  usage();
+  exit(1);
+ }
+
+/*-------------------------------------------------------------------------
+ * 
+ * each remaining argument is an hdf5 file name followed by an optional slash
+ * and object name.
+ *
+ * Example: test1.h5/bar/baz
+ *          \______/\______/
+ *            file     obj
+ *
+ * The dichotomy is determined by calling H5Fopen() repeatedly until it
+ * succeeds. The first call uses the entire name and each subsequent call
+ * chops off the last component. If we reach the beginning of the name
+ * then there must have been something wrong with the file (perhaps it
+ * doesn't exist). 
+ *
+ *-------------------------------------------------------------------------*/
+
+ fname_src = HDstrdup(argv[argno++]);
+
+ while (fname_src && *fname_src) 
+ {
+  fid_src = h5tools_fopen(fname_src, NULL, NULL, 0, argc, argv);
+  
+  if (fid_src>=0) 
+   break; /*success*/
+  
+  /* shorten the file name; lengthen the object name */
+  x = oname_src;
+  oname_src = strrchr(fname_src, '/');
+  if (x) 
+   *x = '/';
+  if (!oname_src) 
+   break;
+  *oname_src = '\0';
+ }
+ if (oname_src) 
+  oname_src++;
+ if (!oname_src || !*oname_src) 
+  oname_src = root_name;
+
+
+/*-------------------------------------------------------------------------
+ * last argument, same logic, but the file does not exist, so we attempt to
+ * create one instead
+ *-------------------------------------------------------------------------*/
+
+ fname_dst = HDstrdup(argv[argno]);
+
+ while (fname_dst && *fname_dst) 
+ {
+  H5E_BEGIN_TRY {
+   fid_dst = H5Fcreate(fname_dst, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+  } H5E_END_TRY;
+  
+  if (fid_dst>=0) 
+   break; /*success*/
+  
+  /* shorten the file name; lengthen the object name */
+  x = oname_dst;
+  oname_dst = strrchr(fname_dst, '/');
+  if (x) 
+   *x = '/';
+  if (!oname_dst) 
+   break;
+  *oname_dst = '\0';
+ }
+ if (oname_dst) 
+  oname_dst++;
+ if (!oname_dst || !*oname_dst) 
+  oname_dst = NULL;
+
+ 
+/*-------------------------------------------------------------------------
+ * check destination name
+ *-------------------------------------------------------------------------*/
+
+ if (oname_dst==NULL) 
+ {
+  printf("Destination object name missing\n");
+  usage();
+  goto error;
+ }
+
+ 
+/*-------------------------------------------------------------------------
+ * print some info
+ *-------------------------------------------------------------------------*/
+ 
+ if (verbose)
+ {
+  printf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n",
+   fname_src,
+   oname_src,
+   fname_dst,
+   oname_dst);
+  if (flag)
+   printf("Using %s flag\n", str_flag);
+ }
+
+ 
+/*-------------------------------------------------------------------------
+ * create a property list for copy
+ *-------------------------------------------------------------------------*/
+ 
+ /* create property to pass copy options */
+ if ( (pid = H5Pcreate(H5P_OBJECT_COPY)) < 0) 
+  goto error;
+ 
+ /* set options for object copy */
+ if (flag)
+ {
+  if ( H5Pset_copy_object(pid, flag) < 0) 
+   goto error;
+ }
+
+
+/*-------------------------------------------------------------------------
+ * do the copy
+ *-------------------------------------------------------------------------*/
+
+  if (H5Gcopy(fid_src,        /* Source file or group identifier */
+              oname_src,      /* Name of the source object to be copied */
+              fid_dst,        /* Destination file or group identifier  */
+              oname_dst,      /* Name of the destination object  */
+              pid,            /* Properties which apply to the copy   */
+              H5P_DEFAULT)<0) /* Properties which apply to the new hard link */              
+              goto error;
+
+  
+ 
+ /* close property */
+ if (H5Pclose(pid)<0)
+  goto error;
+
+ if (fid_src>0)
+  H5Fclose(fid_src);
+ if (fid_dst>0)
+  H5Fclose(fid_dst);
+
+ if (fname_src)
+  free(fname_src);
+ if (fname_dst)
+  free(fname_dst);
+ 
+
+ return 0;
+
+error:
+ printf("Error in copy...Exiting\n");
+ H5E_BEGIN_TRY {
+  H5Pclose(pid);
+  H5Fclose(fid_src);
+  H5Fclose(fid_dst);
+  } H5E_END_TRY;
+ if (fname_src)
+  free(fname_src);
+ if (fname_dst)
+  free(fname_dst);
+ 
+ 
+ return 1;
+}
+
diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh
new file mode 100644
index 0000000..c755503
--- /dev/null
+++ b/tools/h5copy/testh5copy.sh
@@ -0,0 +1,64 @@
+#! /bin/sh
+#
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu.
+#
+# Tests for the h5copy tool
+
+H5COPY=h5copy               # The tool name
+H5COPY_BIN=`pwd`/$H5COPY    # The path of the tool binary
+
+nerrors=0
+
+# The build (current) directory might be different than the source directory.
+if test -z "$srcdir"; then
+    srcdir=.
+fi
+test -d ../testfiles || mkdir ../testfiles
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Testing".
+TESTING() {
+    SPACES="                                                               "
+    echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
+}
+
+# Run a test and print PASS or *FAIL*. If h5copy can complete
+# with exit status 0, consider it pass. If a test fails then increment
+# the `nerrors' global variable.
+
+TOOLTEST() {
+    
+    TESTING $H5COPY $@
+
+ 
+}
+
+
+
+
+
+##############################################################################
+##############################################################################
+###			  T H E   T E S T S                                            ###
+##############################################################################
+##############################################################################
+
+
+#TOOLTEST -v test1.h5/array test1.out.h5/array
+
+
+#if test $nerrors -eq 0 ; then
+#	echo "All h5copy tests passed."
+#fi
+
+#exit $nerrors